apiVersion: batch/v1
kind: Job
metadata:
  name: nf-f3fda55c6df38cb86360395704810fe6-3a325
  namespace: nextflow
  labels: &id001 {nextflow.io/processName: NIPT_CALLING_NIPT_CALL_VARIANTS, nextflow.io/runName: nipt-horizon-5pct10pct-noasm-wgs-idtbed-6a26bf78,
    nextflow.io/sessionId: uuid-cc40e436-2174-49a8-81f3-72a1eec9ce85, pltf/run-name: nipt-horizon-5pct10pct-noasm-wgs-idtbed-6a26bf78,
    pltf/run-component: task, instanceNetworkBandwidth: '10000', nextflow.io/app: nextflow,
    nextflow.io/taskName: NIPT_CALLING_NIPT_CALL_VARIANTS_10pct-FF-HG00733_shard_0001,
    pltf/run-id: c73d7363, pltf/run-engine: nextflow, instanceLocalNvme: 'true', pltf/run-creator: tdouglas}
  ownerReferences:
  - {apiVersion: v1, kind: Pod, name: nipt-horizon-5pct10pct-noasm-wgs-idtbed-6a26bf78-c73d7363-775vx,
    uid: f8f7de5e-9bc5-4e9e-b441-3e696d6ccfbd, controller: true, blockOwnerDeletion: true}
spec:
  backoffLimit: 0
  template:
    metadata:
      name: nf-f3fda55c6df38cb86360395704810fe6-3a325
      namespace: nextflow
      labels: *id001
    spec:
      restartPolicy: Never
      containers:
      - name: nextflow
        image: 292967571998.dkr.ecr.us-west-2.amazonaws.com/community.wave.seqera.io/library/htslib_pysam_numpy_scipy:275cef53a6366c67
        args: [/bin/bash, -o, pipefail, -c, 'trap "{ ret=$?; /opt/s5cmd/bin/s5cmd
            --log error cp .command.log s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/fda55c6df38cb86360395704810fe6/.command.log||true;
            exit $ret; }" EXIT; /opt/s5cmd/bin/s5cmd --log error cat s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/fda55c6df38cb86360395704810fe6/.command.run
            | bash 2>&1 | tee .command.log']
        workingDir: /tmp
        imagePullPolicy: Always
        env:
        - {name: SSL_CERT_DIR, value: /opt/s5cmd/ssl/certs}
        - {name: SSL_CERT_FILE, value: /opt/s5cmd/ssl/ca-certificates.crt}
        resources:
          requests: {cpu: 16, memory: 16384Mi, ephemeral-storage: 2097152Mi}
          limits: {memory: 16384Mi, ephemeral-storage: 2097152Mi}
        volumeMounts:
        - {name: vol-457, mountPath: /app}
        - {name: vol-458, mountPath: /tmp}
        - {name: vol-459, mountPath: /mnt/secrets}
        - {name: vol-460, mountPath: /opt/s5cmd}
      nodeSelector: {karpenter.sh/capacity-type: spot, kubernetes.io/arch: amd64}
      serviceAccountName: sa-nextflow
      securityContext: {runAsUser: 1000}
      tolerations:
      - {key: workload, operator: Equal, value: nextflow-task, effect: NoSchedule}
      activeDeadlineSeconds: 115200
      volumes:
      - name: vol-457
        emptyDir: []
      - name: vol-458
        emptyDir: []
      - name: vol-459
        secret: {secretName: aws-secrets-manager}
      - name: vol-460
        hostPath: {path: /opt/s5cmd}
  ttlSecondsAfterFinished: 28800