.command.sh - Workdir - NIPT_CALLING:SPLIT_BED (IDT_Exomev2_hg38_gene_windows_100kb_flanks_filtered_x48)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/a781eb8be472d0b2c4ebacc229c28b/.command.sh
Size: 258 bytes
Task: NIPT_CALLING:SPLIT_BED (IDT_Exomev2_hg38_gene_windows_100kb_flanks_filtered_x48)
Attempt

Content

#!/bin/bash -euo pipefail
mkdir -p split
nipt_split_intervals.py \
    --bed IDT_Exomev2_hg38_gene_windows_100kb_flanks_filtered.bed \
    --fai Homo_sapiens_assembly38.fasta.fai \
    --outdir split \
    --manifest split_manifest.tsv \
    --n-shards 48 \