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Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume e4c571a4-59e5-459c-ba35-73964803ecbb -name nobles_exp018A_recal_n7_hrd_update_01
Error Report
Error executing process > 'NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2 (10)' Caused by: Process `NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2` input file name collision -- There are multiple input files for each of the following file names: dna_s1402.recalibrated.bam.bai, dna_s1402.recalibrated.bam Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/community.wave.seqera.io/library/sentieon:202308.03--b599c8ad694846bd Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- e4c571a4-59e5-459c-ba35-73964803ecbb
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Submitted By
- ubuntu (cpg_sarek)
- Resumed
- No
Cost and Runtime
- Status
- failed
- Cost
- $1.73
- Outputs
- 4 MB
- Started
- Feb 26, 2026 2:50 PM
- Completed
- Feb 26, 2026 2:58 PM
- Duration
- 7m 51s
- Post-workflow Transfer
- 2s
- Exit Status
- -
- Peak Tasks / CPU / Mem
- 207 / 483 / 897.0 GB