File Info

Filename
869_G7Y-T1-TDNA-1_A23FG3YLT4_1_vs_869_G7Y-N1-BDNA-1_A23FG3YLT4_1.segments.csv
Full Path
s3://natera-platform-sandbox/platform-users/chnobles/cgp_runs/cgp_dna_exp0021/20260113_LH00527_0046_A23FG3YLT4_tools_recal_facets__315a930f--20260304-023801/variant_calling/facets/869_G7Y-T1-TDNA-1_A23FG3YLT4_1_vs_869_G7Y-N1-BDNA-1_A23FG3YLT4_1/869_G7Y-T1-TDNA-1_A23FG3YLT4_1_vs_869_G7Y-N1-BDNA-1_A23FG3YLT4_1.segments.csv
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22.3 KB
Workflow Run
nobles_exp021_facets_update_02
Published
Mar 03, 2026 7:59 PM

Content

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chrom seg num.mark nhet cnlr.median mafR segclust cnlr.median.clust mafR.clust start end cf.em tcn.em lcn.em
1 1 1 13512 1724 -0.0519112188477648 -0.00197046146546463 22 -0.0456997207875309 -0.00169481201948421 13110 40231467 1 2 1
2 1 2 13 0 -1.01939857740256 0 4 -1.02081506109384 NA 40231701 40238674 0.3 0 0
3 1 3 8678 872 -0.0620213352786207 -0.00358275299205386 24 -0.0456997207875309 -0.00291793114321255 40239137 88962161 1 2 1
4 1 4 288 35 0.335076931865827 0.0156643429303066 41 0.345738185083521 0.00181874961114455 88964737 90018866 0.311700098351067 4 2
5 1 5 6923 574 -0.0244329851508923 -0.00127980144454288 22 -0.0456997207875309 -0.00169481201948421 90020794 147936730 1 2 1
6 1 6 15 0 -0.900927883924177 0 7 -0.896720230833976 NA 147938747 147986508 0.3 0 0
7 1 7 5060 384 -0.0508832681059593 0.0011877498824684 26 -0.0456997207875309 0.00153926701388854 147988342 158388187 1 2 1
8 1 8 312 61 0.35663158509896 0.00298131259116158 41 0.345738185083521 0.00181874961114455 158398519 159051970 0.311700098351067 4 2
9 1 9 2845 329 -0.0107665465874821 -0.00329604724944306 24 -0.0456997207875309 -0.00291793114321255 159052023 170958662 1 2 1
10 1 10 10 4 -0.698679197718927 -0.0412029888125705 11 -0.70039161051526 NA 170959530 170980021 0.3 0 0
11 1 11 11 2 0.304182906778858 -0.0233236407480628 40 0.28714176071678 NA 170983381 170995632 0.3 4 NA
12 1 12 21 4 -0.908743769332184 -0.0450636279205214 7 -0.896720230833976 NA 170996540 171064538 0.3 0 0
13 1 13 14660 1599 -0.0371414154389661 -0.000795240053622311 23 -0.0456997207875309 0.000255662537368711 171092591 247672098 1 2 1
14 1 14 273 69 0.326519865246546 -0.000158938830908372 41 0.345738185083521 0.00181874961114455 247672372 248682324 0.311700098351067 4 2
15 1 15 76 1 -0.0754556441586772 0.0555467486562515 21 -0.0893767119712466 NA 248722010 248936875 0.3 2 NA
16 2 16 2136 288 -0.0457922788547451 -0.00366844881361863 24 -0.0456997207875309 -0.00291793114321255 41366 20260389 1 2 1
17 2 17 18 1 1.00083178167614 -0.0628624261222051 49 0.99932790424254 NA 20263091 20297675 0.3 9 NA
18 2 18 12204 1307 -0.0554339571463111 -0.00450137797692713 22 -0.0456997207875309 -0.00169481201948421 20308012 91698690 1 2 1
19 2 19 11 4 0.853971825180147 -0.022300555605856 47 0.853971825180147 NA 91699816 91712052 0.3 8 NA
20 2 20 11131 1132 -0.0559109177405269 0.00233237986911097 23 -0.0456997207875309 0.000255662537368711 91714407 167243441 1 2 1
21 2 21 12 0 -1.10214450678387 0 3 -1.07250841020017 NA 167243742 167246603 0.3 0 0
22 2 22 2860 312 0.0463096232833456 -0.00185604717499563 30 0.0334961298126331 0.00027202867469786 167246913 178741407 1 2 1
23 2 23 31 4 -0.846422144124839 -0.0227001041805829 8 -0.846422144124839 NA 178741811 178756224 0.3 0 0
24 2 24 784 97 -0.0110614996338471 0.0111522745402368 27 -0.0456997207875309 0.00523621681954283 178756269 185744598 1 2 1
25 2 25 111 14 -0.791613704433896 -0.00694864808831521 9 -0.802695256549687 NA 185745367 185884164 0.3 0 0
26 2 26 4199 355 0.0215711060335415 0.00215086310206649 30 0.0334961298126331 0.00027202867469786 186015500 209700315 1 2 1
27 2 27 198 5 0.463609620072499 0.0341936458786567 43 0.459165338554684 NA 209700478 210016481 0.3 5 NA
28 2 28 281 24 -0.109718754525887 0.0032172727297395 18 -0.0893767119712466 0.000606218727264799 210016580 211630973 1 2 1
29 2 29 16 5 1.12283892484107 0.000900662117294616 51 1.12283892484107 NA 211657716 211702507 0.3 10 NA
30 2 30 6780 821 -0.0608082145845112 -0.00230838856620706 22 -0.0456997207875309 -0.00169481201948421 211704020 242122401 1 2 1
31 3 31 1990 286 -0.0582380695771527 0.00388305318037773 27 -0.0456997207875309 0.00523621681954283 44291 12314262 1 2 1
32 3 32 10 0 -1.01636578038933 0 4 -1.02081506109384 NA 12314771 12317093 0.3 0 0
33 3 33 13287 1234 -0.0339900320053736 -0.00107052334636028 22 -0.0456997207875309 -0.00169481201948421 12317335 77527634 1 2 1
34 3 34 18 3 0.822175602512281 -0.0574670290095677 46 0.80913342789819 NA 77546329 77574919 0.3 7 NA
35 3 35 10 0 -0.648874234675229 0 12 -0.648874234675229 NA 77577526 77595311 0.3 0 0
36 3 36 21 1 1.07478093126087 -0.120181189164835 50 1.07478093126087 NA 77596624 77645053 0.3 10 NA
37 3 37 30 1 -0.277225261381574 0.189348955075298 15 -0.27886938110449 NA 77646066 78607193 0.3 1 0
38 3 38 19 0 0.981526281019123 0 49 0.99932790424254 NA 78614410 78640074 0.3 9 NA
39 3 39 420 49 -0.0364853248376321 -0.0123155828966717 25 -0.0456997207875309 -0.00586905407895531 78646112 89400426 1 2 1
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41 3 41 19 1 0.931926170181351 -0.00726181624339508 48 0.924634285530748 NA 89429208 89479718 0.3 8 NA
42 3 42 415 40 -0.120999188844315 -0.00319677894199261 20 -0.0893767119712466 -0.00319677894199261 89480186 97945881 1 2 1
43 3 43 47 5 0.101481296048351 0.123151528970397 35 0.101481296048351 NA 97947345 98090226 0.3 3 NA
44 3 44 56 27 -0.940164450778852 -0.00694880401012208 5 -0.938169654068247 -0.00694880401012208 98132631 98328165 0.461308925480655 0 0
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46 3 46 11 1 -0.995346178490792 -0.00212499173303952 4 -1.02081506109384 NA 121487245 121489884 0.3 0 0
47 3 47 13203 1393 -0.0315754412277176 -0.00159869216502118 22 -0.0456997207875309 -0.00169481201948421 121490047 198169918 1 2 1
48 4 48 2813 373 -0.0856201897139711 -0.00128727811402598 18 -0.0893767119712466 0.000606218727264799 15464 9369222 1 2 1
49 4 49 10 3 -1.12867521056248 0.13954038058136 2 -1.16719240829588 NA 9383813 9386680 0.3 0 0
50 4 50 1702 208 -0.0800520753370833 -0.00580753830548077 18 -0.0893767119712466 0.000606218727264799 9387162 26428894 1 2 1
51 4 51 10 1 0.822349387047381 -0.0472051273107816 46 0.80913342789819 NA 26429932 26482399 0.3 7 NA
52 4 52 14249 1530 -0.0160832989873785 0.00217904956855887 23 -0.0456997207875309 0.000255662537368711 26483121 150553372 1 2 1
53 4 53 17 0 0.444857800700828 0 43 0.459165338554684 NA 150582996 150599249 0.3 5 NA
54 4 54 3952 367 0.0119509781688671 0.00302900731677564 31 0.0334961298126331 0.00578463109438859 150683575 190179679 1 2 1
55 5 55 1768 258 -0.0600323630596095 -0.00715394554912988 25 -0.0456997207875309 -0.00586905407895531 23530 13914084 1 2 1
56 5 56 5 3 -0.858285489320306 0.079059089488284 8 -0.846422144124839 NA 13914342 13916541 0.3 0 0
57 5 57 11594 1300 -0.0220356867435559 -0.00057083349993956 23 -0.0456997207875309 0.000255662537368711 13917002 119167752 1 2 1
58 5 58 11 1 -1.18984319128438 0.295192248642318 2 -1.16719240829588 NA 119167831 119175508 0.3 0 0
59 5 59 3828 294 -0.0358823911819188 -0.00176660599393441 24 -0.0456997207875309 -0.00291793114321255 119177396 140705897 1 2 1
60 5 60 615 61 0.280549743275213 0.00278971760294823 39 0.28714176071678 0.00148226289829583 140775241 141478294 0.259491583630438 4 2
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68 6 68 2202 455 -0.0529159440656893 0.000142003722728541 28 -0.0456997207875309 -0.000359442074516218 29604406 32388702 1 2 1
69 6 69 191 90 0.226482623398419 -0.000291213160744118 38 0.240731857007117 -0.00105476223208021 32393705 32841805 0.223349802428288 4 2
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72 6 72 13 1 -1.07113009028532 -0.0352002685443605 3 -1.07250841020017 NA 46690278 46693306 0.3 0 0
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79 6 79 15 0 -1.03569482176198 0 4 -1.02081506109384 NA 70524046 70528674 0.3 0 0
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81 6 81 12 1 0.356472201291699 0.00536095855767343 42 0.345738185083521 NA 87255810 87258583 0.3 4 NA
82 6 82 2640 268 -0.0353346540483628 -0.000657008094409328 22 -0.0456997207875309 -0.00169481201948421 87258847 110101399 1 2 1
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84 6 84 15 4 -1.00252097115739 0.0169473750452548 4 -1.02081506109384 NA 111372676 111376399 0.3 0 0
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192 rows