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Filename
869_PRH-T1-TDNA-1_A23FG3YLT4_1_vs_869_PRH-N1-BDNA-1_A23FG3YLT4_1.segments.csv
Full Path
s3://natera-platform-sandbox/platform-users/chnobles/cgp_runs/cgp_dna_exp0021/20260113_LH00527_0046_A23FG3YLT4_tools_recal_facets__315a930f--20260304-023801/variant_calling/facets/869_PRH-T1-TDNA-1_A23FG3YLT4_1_vs_869_PRH-N1-BDNA-1_A23FG3YLT4_1/869_PRH-T1-TDNA-1_A23FG3YLT4_1_vs_869_PRH-N1-BDNA-1_A23FG3YLT4_1.segments.csv
Size
8.9 KB
Workflow Run
nobles_exp021_facets_update_02
Published
Mar 03, 2026 7:59 PM

Content

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chrom seg num.mark nhet cnlr.median mafR segclust cnlr.median.clust mafR.clust start end cf.em tcn.em lcn.em
1 1 1 5864 856 -0.0794949263134928 0.000660326099713912 13 -0.0854675799262272 -0.000507058967939146 13116 18918724 1 2 1
2 1 2 41512 4220 -0.0102580776245773 0.000315752117994762 14 -0.0280127633418253 0.00190999762155412 18919584 248936863 1 2 1
3 2 3 13993 1457 -0.032054218058039 0.00245911211126961 14 -0.0280127633418253 0.00190999762155412 41404 97184018 1 2 1
4 2 4 11 1 0.213966716122699 -0.0141413743104643 21 0.211804025188904 NA 97185227 97189517 NA 2 NA
5 2 5 22556 2515 -0.0345441119677627 0.00360210953316771 14 -0.0280127633418253 0.00190999762155412 97190724 242122507 1 2 1
6 3 6 99 19 -0.187709360927156 -0.00739350445694652 8 -0.187709360927156 -0.00739350445694652 44356 1385520 0.301829805396763 1 0
7 3 7 7 3 -1.43928674574973 -0.126618838620139 1 -1.43928674574973 NA 1385941 1402710 0.525582266164884 0 0
8 3 8 1570 291 3.08538700835026e-05 0.00790224007463836 15 -0.0280127633418253 0.00546628891593749 1403394 12288811 1 2 1
9 3 9 467 113 -0.157179867902229 0.00441192814204666 11 -0.127756941182033 0.00441192814204666 12289132 12610380 1 2 1
10 3 10 11518 854 -0.0235652414848218 0.00545026681615603 15 -0.0280127633418253 0.00546628891593749 12611923 77644870 1 2 1
11 3 11 21 2 -0.456878520439011 0.0527591082721145 3 -0.432162710155281 NA 77646115 78600375 0.417283703067512 1 0
12 3 12 15441 1671 -0.0331185299353081 0.00322643468330636 14 -0.0280127633418253 0.00190999762155412 78606816 198170016 1 2 1
13 4 13 19983 2318 -0.0378256858560202 0.00229163521583191 14 -0.0280127633418253 0.00190999762155412 15705 190174464 1 2 1
14 5 14 14963 1667 -0.0342879540156347 0.00441183396311231 15 -0.0280127633418253 0.00546628891593749 23586 140497441 1 2 1
15 5 15 774 28 0.138072772555876 0.000366001737169734 19 0.138072772555876 0.000366001737169734 140504926 141478296 0.18045873551181 3 1
16 5 16 6428 751 -0.0167353680703051 0.000854516095767039 14 -0.0280127633418253 0.00190999762155412 141478639 181283503 1 2 1
17 6 17 2895 388 0.0487056721538774 0.0134051860750874 16 0.0318649671462485 0.00370128579295904 105984 27251752 1 2 1
18 6 18 15286 1799 -0.0260543184768909 0.00305909696402417 14 -0.0280127633418253 0.00190999762155412 27252280 127970325 1 2 1
19 6 19 6085 667 0.0363096189420555 0.00415885265528727 16 0.0318649671462485 0.00370128579295904 127972910 170700599 1 2 1
20 7 20 5319 786 -0.0537322168228365 0.00650950840988788 15 -0.0280127633418253 0.00546628891593749 19701 36389812 1 2 1
21 7 21 9 1 1.00542842334352 -0.0205593517627023 23 1.00542842334352 NA 36390106 36406614 0.525582266164884 6 NA
22 7 22 18777 2151 -0.0383566516813021 0.00225458124849524 14 -0.0280127633418253 0.00190999762155412 36407704 159328542 1 2 1
23 8 23 4187 683 -0.0101887087486286 -0.00251330685785655 14 -0.0280127633418253 0.00190999762155412 166176 30794149 1 2 1
24 8 24 825 96 -0.353691320198791 0.00726457809216827 4 -0.363473597756062 0.00348000735316427 30794298 33335203 0.220420117129642 0 0
25 8 25 840 24 -0.127787838728251 0.00218448754934876 10 -0.127756941182033 0.00362424431653174 33372533 38787985 1 2 1
26 8 26 9855 962 -0.0103674585403098 0.00707135232674551 15 -0.0280127633418253 0.00546628891593749 38788816 141151439 1 2 1
27 8 27 1609 164 -0.0940268363709594 -0.00606190120644853 13 -0.0854675799262272 -0.000507058967939146 141151789 145054422 1 2 1
28 9 28 36 9 -0.181663200556318 0.00172760681111921 9 -0.187709360927156 NA 13251 154652 NA 2 NA
29 9 29 17820 1971 -0.0281640429012327 0.0023348253226337 14 -0.0280127633418253 0.00190999762155412 154792 133376399 1 2 1
30 9 30 2435 406 -0.120461848828334 -0.00194876862779834 10 -0.127756941182033 0.00362424431653174 133379032 138233884 1 2 1
31 10 31 4671 544 0.604730696927278 0.448570289831837 22 0.604730696927278 0.448570289831837 47183 38719588 0.499296428071537 4 1
32 10 32 15172 1846 -0.0271933842952948 0.00221469088443306 14 -0.0280127633418253 0.00190999762155412 38730517 133654546 1 2 1
33 11 33 122 9 0.00951780446942557 0.0532410215986565 17 0.0318649671462485 NA 179401 294553 NA 2 NA
34 11 34 1455 223 -0.153076552554573 0.0132432889224106 10 -0.127756941182033 0.00362424431653174 294976 2955831 1 2 1
35 11 35 159 17 -0.0312552911935616 0.010719294089801 15 -0.0280127633418253 0.00546628891593749 2958267 3422247 1 2 1
36 11 36 1090 226 0.0913530196902362 -0.000156405183115638 18 0.0913530196902362 -0.000156405183115638 3422543 6921642 1 2 1
37 11 37 22800 2537 -0.0238280300234125 0.00153165623349518 14 -0.0280127633418253 0.00190999762155412 6922027 135020678 1 2 1
38 12 38 25479 2753 -0.0302750426170151 0.00228847121968516 14 -0.0280127633418253 0.00190999762155412 13248 133246944 1 2 1
39 13 39 9314 1186 -0.0234146550376713 0.00342659426414187 15 -0.0280127633418253 0.00546628891593749 18173353 114326392 1 2 1
40 14 40 13615 1486 -0.00210966747070927 0.00585041381450553 15 -0.0280127633418253 0.00546628891593749 16048800 106460957 1 2 1
41 15 41 14310 1547 -0.0371113077537731 0.00272736296088287 14 -0.0280127633418253 0.00190999762155412 17071488 87028809 1 2 1
42 15 42 856 179 -0.33040555357409 0.00295807508481086 5 -0.319361719002628 0.00217632994789809 87046272 88392168 0.197491249397645 0 0
43 15 43 2163 369 -0.0270147844614052 0.00427657599611784 14 -0.0280127633418253 0.00190999762155412 88459765 101976531 1 2 1
44 16 44 2124 237 -0.11384583772616 0.00387347027007303 10 -0.127756941182033 0.00362424431653174 14614 2716610 1 2 1
45 16 45 15230 1690 -0.0194409961681922 0.000625823580184174 14 -0.0280127633418253 0.00190999762155412 2720137 85806965 1 2 1
46 16 46 1400 328 -0.113571663572516 0.000721025974682771 10 -0.127756941182033 0.00362424431653174 85807161 90197286 1 2 1
47 17 47 12776 1650 -0.0401628155683023 0.00205133889620994 14 -0.0280127633418253 0.00190999762155412 116352 40651705 1 2 1
48 17 48 337 50 0.211682530395214 0.00571470811867052 20 0.211804025188904 0.00571470811867052 40653747 41348811 0.148983934626771 4 2
49 17 49 13326 1587 -0.0432778557637029 0.0030273945787356 14 -0.0280127633418253 0.00190999762155412 41349146 83240004 1 2 1
50 18 50 4888 509 -0.00320238187167338 -0.00301402255600225 14 -0.0280127633418253 0.00190999762155412 47436 47630070 1 2 1
51 18 51 146 27 -0.379731500770734 -0.00168638433030431 4 -0.363473597756062 0.00348000735316427 47630304 47879297 0.220420117129642 0 0
52 18 52 2753 336 0.016287972820717 -0.00422823845369363 16 0.0318649671462485 0.00370128579295904 47879525 80247399 1 2 1
53 19 53 6646 1031 -0.0830023260188076 -0.000660588729681127 13 -0.0854675799262272 -0.000507058967939146 110660 11667206 1 2 1
54 19 54 319 42 -0.431040726008615 -0.00211863131651 2 -0.432162710155281 -0.00211863131651 11682323 12643215 0.231439581617439 0 0
55 19 55 6199 866 -0.0591626035027112 0.00324425368364379 14 -0.0280127633418253 0.00190999762155412 12643501 36183751 1 2 1
56 19 56 345 46 -0.375155840428897 -0.00842543317113996 4 -0.363473597756062 0.00348000735316427 36183882 37742199 0.220420117129642 0 0
57 19 57 7835 926 -0.0434808886089089 5.39395225035081e-05 14 -0.0280127633418253 0.00190999762155412 37769943 52211547 1 2 1
58 19 58 478 94 -0.364887404720573 -0.000332713617079072 4 -0.363473597756062 0.00348000735316427 52211808 53773335 0.220420117129642 0 0
59 19 59 2583 446 -0.0501725839965856 -7.92967263786246e-05 14 -0.0280127633418253 0.00190999762155412 53775515 58599150 1 2 1
60 20 60 36 17 -0.316427444393722 -0.0150500682412636 7 -0.319361719002628 -0.0150500682412636 87815 278496 0.148470510829598 0 0
61 20 61 10034 1082 0.00250483504658285 0.00499277204469366 15 -0.0280127633418253 0.00546628891593749 279114 60258970 1 2 1
62 20 62 1336 252 -0.0978853628442944 -0.00770062423252448 13 -0.0854675799262272 -0.000507058967939146 60386429 64328010 1 2 1
63 21 63 558 148 -0.293628051505237 0.00927638645006335 6 -0.319361719002628 0.00927638645006335 5030208 14801602 0.165181512237393 0 0
64 21 64 3540 475 0.0205896554943467 0.00114910819794378 16 0.0318649671462485 0.00370128579295904 14933907 44127871 1 2 1
65 21 65 1111 234 -0.0664342504224022 0.00671965417391507 15 -0.0280127633418253 0.00546628891593749 44224638 46664580 1 2 1
66 22 66 2214 385 -0.0850675882787027 0.00324868961117014 13 -0.0854675799262272 -0.000507058967939146 10678752 22589295 1 2 1
67 22 67 339 98 -0.320367935334345 0.000505255463226965 5 -0.319361719002628 0.00217632994789809 22627658 23359865 0.197491249397645 0 0
68 22 68 7948 1057 -0.0366752174975787 0.000648375998369791 14 -0.0280127633418253 0.00190999762155412 23363129 50798928 1 2 1
69 23 69 280 0 -0.138371051861012 0 12 -0.127756941182033 NA 284256 2719872 NA 2 NA
70 23 70 7611 457 -0.0495542119300492 0.000541088313424993 14 -0.0280127633418253 0.00190999762155412 2720448 66616002 1 2 1
71 23 71 10302 655 -0.131483012859152 0.004909285367279 10 -0.127756941182033 0.00362424431653174 66616196 155680216 1 2 1
72 rows