File Info

Filename
FFPE_HD789_01_p1_gDNA_0005_A23H5VJLT4_1_vs_NA12878_c_0003_gDNA_0002_A237CFYLT3_1.segments.csv
Full Path
s3://natera-platform-sandbox/platform-users/chnobles/cgp_runs/cgp_dna_exp0024/tools_facets__dde85de3--20260304-153357/variant_calling/facets/FFPE_HD789_01_p1_gDNA_0005_A23H5VJLT4_1_vs_NA12878_c_0003_gDNA_0002_A237CFYLT3_1/FFPE_HD789_01_p1_gDNA_0005_A23H5VJLT4_1_vs_NA12878_c_0003_gDNA_0002_A237CFYLT3_1.segments.csv
Size
32.8 KB
Workflow Run
nobles_exp024_facets_update_02
Published
Mar 04, 2026 8:40 AM

Content

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chrom seg num.mark nhet cnlr.median mafR segclust cnlr.median.clust mafR.clust start end cf.em tcn.em lcn.em
1 1 1 637 45 -0.151511887488044 1.76110699352887 19 -0.166258204980835 2.43151388080331 925977 1642550 0.632546780699603 2 0
2 1 2 2711 253 -0.244611148800555 1.5822060761104 15 -0.225860177965647 1.63679355171048 1645217 12273153 1 2 1
3 1 3 216 5 -0.137111990804012 0.878753799966099 24 -0.113964317969947 NA 12275898 12894659 NA 2 NA
4 1 4 24 1 -0.802613748826324 4.41887889420361 3 -0.802613748826324 NA 12894975 13053703 0.632546780699603 1 0
5 1 5 4757 435 -0.187604074538373 1.43100341972001 18 -0.166258204980835 1.23675683074399 13061360 31691339 1 2 1
6 1 6 3670 252 -0.148698927246375 2.2152386180559 19 -0.166258204980835 2.43151388080331 31691667 45206458 0.632546780699603 2 0
7 1 7 1050 42 -0.164147823645787 0.667384011200193 18 -0.166258204980835 1.23675683074399 45325715 51748495 1 2 1
8 1 8 110 1 0.0619677704973364 2.92697773631152 34 0.0713940829289319 NA 51750306 52033863 NA 2 NA
9 1 9 8225 632 -0.0183636818376437 1.39615571958064 29 -0.00239439934259508 1.13900186433191 52041615 119894128 1 2 1
10 1 10 2015 151 0.103304457980443 1.63143240374708 35 0.112165339747619 1.29643582604821 119894397 152114111 0.632546780699603 3 1
11 1 11 127 45 0.539040624540338 1.88571541120506 51 0.545196205922169 1.49106864578989 152154871 152357261 0.380553002189665 5 0
12 1 12 16053 1400 0.074734642401242 1.08578517586504 33 0.0713940829289319 1.26288676516163 152357608 247448552 0.632546780699603 3 1
13 1 13 210 40 0.347158751702398 1.58386525902067 43 0.362563884649001 1.75199277239042 247451175 248522469 0.55160888115327 4 0
14 1 14 21 7 1.10238451768891 2.01323812154276 61 1.15209144167244 NA 248522724 248682346 0.634630004772382 6 NA
15 1 15 58 0 0.168228656527326 0 38 0.170896742501994 NA 248739666 248918449 0.442870633786998 3 NA
16 2 16 1091 104 -0.239692475190655 1.03944342425894 16 -0.225860177965647 1.16696785857654 41647 12723472 1 2 1
17 2 17 13 0 2.85629398194078 0 67 2.85629398194078 NA 12723671 14649273 0.634630004772382 24 NA
18 2 18 177 13 1.99850633379702 5.77527385135083 66 2.01018330928353 NA 15167035 15949778 0.634630004772382 12 NA
19 2 19 93 2 -0.155219063526822 0.191107745312216 21 -0.166258204980835 NA 16552889 17754046 NA 2 NA
20 2 20 2448 203 0.168176234872227 1.45048977088801 37 0.170896742501994 1.20893906153037 17759997 29451808 0.632546780699603 3 1
21 2 21 12 1 2.01567597295017 2.11941828781155 66 2.01018330928353 NA 29504362 29695032 0.634630004772382 13 NA
22 2 22 132 20 0.199412754133071 2.78091687499719 37 0.170896742501994 1.20893906153037 29715397 31194541 0.632546780699603 3 1
23 2 23 526 30 0.367242588888524 3.58038170767046 44 0.362563884649001 3.78117353602156 31197277 33599323 0.632546780699603 3 0
24 2 24 3447 271 -0.151743424150543 1.26225135273363 18 -0.166258204980835 1.23675683074399 36356347 66443067 1 2 1
25 2 25 29 2 2.03238836100538 3.70858747139241 66 2.01018330928353 NA 66464272 67410156 0.634630004772382 13 NA
26 2 26 130 20 -0.155765868645624 0.872165017794813 18 -0.166258204980835 1.23675683074399 68042936 68871299 1 2 1
27 2 27 49 2 1.73159106437452 1.92882355143706 65 1.7329353988822 NA 68871463 69172443 0.634630004772382 10 NA
28 2 28 2620 166 -0.185173218902496 1.42013565520211 18 -0.166258204980835 1.23675683074399 69181857 95405771 1 2 1
29 2 29 2877 186 -0.0932908025971855 1.64051380258709 22 -0.113964317969947 1.45509519156525 95405934 112831216 1 2 1
30 2 30 232 50 -0.155536987890168 0.578649923266837 18 -0.166258204980835 1.23675683074399 112831438 113460862 1 2 1
31 2 31 16 3 0.524399527826604 1.1263467756723 52 0.545196205922169 NA 113462478 113500494 0.432613322109715 5 NA
32 2 32 1577 125 -0.201251415755446 1.26257646560718 15 -0.225860177965647 1.63679355171048 113628632 134448872 1 2 1
33 2 33 327 0 0.110145400159532 0 36 0.112165339747619 NA 134456738 135920612 0.33576330025067 3 NA
34 2 34 4337 339 -0.146978483648382 1.16622938235913 18 -0.166258204980835 1.23675683074399 135922886 178494039 1 2 1
35 2 35 1611 90 -0.0403804019630464 1.61296383489248 25 -0.0608884421942111 1.47485949985911 178495657 189043338 1 2 1
36 2 36 4112 311 -0.180185962402196 1.07767782859819 18 -0.166258204980835 1.23675683074399 189045142 218633625 1 2 1
37 2 37 712 12 -0.106125065348916 15.5475395772697 24 -0.113964317969947 NA 218633829 219541232 NA 2 NA
38 2 38 1247 95 -0.243174360746907 1.61204604730883 15 -0.225860177965647 1.63679355171048 219541688 230400265 1 2 1
39 2 39 660 77 0.0248707812842848 1.7647258163001 28 -0.00239439934259508 1.63361974617986 230401009 233293352 1 2 1
40 2 40 607 75 -0.154140090848491 1.32387515252957 18 -0.166258204980835 1.23675683074399 233293446 237518668 1 2 1
41 2 41 1255 156 -0.328040632787452 1.62388191561256 12 -0.320215384158286 2.00406201693508 237518708 241873382 1 2 1
42 3 42 1336 145 -0.197289822596676 1.73020268982715 15 -0.225860177965647 1.63679355171048 319825 12190482 1 2 1
43 3 43 385 24 -0.0131049252939693 3.14255444675911 30 -0.00239439934259508 2.57341601052934 12190708 12434437 0.632546780699603 2 0
44 3 44 4945 359 -0.164321983361157 1.23855037441991 18 -0.166258204980835 1.23675683074399 12489866 48260955 1 2 1
45 3 45 2455 19 -0.104969878034656 3.42317130543141 24 -0.113964317969947 NA 48268045 52545272 0.632546780699603 2 0
46 3 46 1433 115 -0.205339908219666 0.832824506847009 16 -0.225860177965647 1.16696785857654 52545697 61562505 1 2 1
47 3 47 389 37 0.0129464003579169 2.67130511886357 30 -0.00239439934259508 2.57341601052934 61748996 66038378 0.632546780699603 2 0
48 3 48 732 83 -0.0616583809780584 0.786549293800127 26 -0.0608884421942111 0.68516727417778 66221057 77563251 1 2 1
49 3 49 12510 1036 0.0536322031832928 1.39406205923745 33 0.0713940829289319 1.26288676516163 77563424 198169947 0.632546780699603 3 1
50 4 50 2064 232 -0.209058151638828 1.48511460092152 16 -0.225860177965647 1.16696785857654 53352 8949805 1 2 1
51 4 51 25 2 0.538454050034449 8.85299630118003 52 0.545196205922169 NA 8950126 9269169 0.432613322109715 5 NA
52 4 52 2808 217 -0.177299459770156 1.27692912492168 18 -0.166258204980835 1.23675683074399 9444583 51843131 1 2 1
53 4 53 1307 142 -0.0492131519769344 2.77339871072093 25 -0.0608884421942111 1.47485949985911 51843464 69214120 1 2 1
54 4 54 16 1 0.793249780823227 5.36026882586689 55 0.782116144265116 NA 69214421 69294927 0.43324278867802 6 NA
55 4 55 2419 151 -0.0394024385164394 1.22746200705883 25 -0.0608884421942111 1.47485949985911 69480696 87613305 1 2 1
56 4 56 12 5 0.703136947034732 1.2764148884205 54 0.699245075414319 NA 87613879 87616585 0.48175393837183 6 NA
57 4 57 373 17 -0.00460002917534913 1.93592663563059 28 -0.00239439934259508 1.63361974617986 87656602 90400009 1 2 1
58 4 58 2742 204 -0.144088624866216 1.02954298552431 18 -0.166258204980835 1.23675683074399 90400241 123401779 1 2 1
59 4 59 105 7 0.181164333025364 0.713515386936476 38 0.170896742501994 NA 123402197 125491868 0.442870633786998 3 NA
60 4 60 259 20 -0.158288808620536 0.164757040575661 20 -0.166258204980835 0.164757040575661 127633100 128998036 0.231347395519539 2 0
61 4 61 3247 262 0.00335955615281697 1.09633579841847 29 -0.00239439934259508 1.13900186433191 128999727 183447542 1 2 1
62 4 62 737 108 -0.150353559914812 1.15939678936274 18 -0.166258204980835 1.23675683074399 183505234 190174686 1 2 1
63 5 63 239 51 -0.0271827715199097 0.874095427718806 29 -0.00239439934259508 1.13900186433191 92342 755130 1 2 1
64 5 64 341 49 0.377404967530654 1.85144144258985 43 0.362563884649001 1.75199277239042 755947 1882166 0.55160888115327 4 0
65 5 65 2325 203 0.168599716481785 1.0531213336801 37 0.170896742501994 1.20893906153037 1882563 38868933 0.632546780699603 3 1
66 5 66 226 18 0.497839638372394 1.41865506522497 50 0.500571361176962 1.41865506522497 38876255 40716531 0.340338613041047 5 0
67 5 67 721 61 0.166390459448933 1.07389069690687 37 0.170896742501994 1.20893906153037 40728369 53108504 0.632546780699603 3 1
68 5 68 5419 472 -0.00918852454021346 1.2432695357699 29 -0.00239439934259508 1.13900186433191 53108747 119129360 1 2 1
69 5 69 2960 200 0.14183756250769 1.81963285691591 37 0.170896742501994 1.20893906153037 119133218 140786424 0.632546780699603 3 1
70 5 70 245 1 0.422825625068571 65.917835010705 48 0.426594735676662 NA 140786469 141174294 0.632546780699603 3 NA
71 5 71 12 0 1.13566613986971 0 61 1.15209144167244 NA 141174643 141179883 0.634630004772382 6 NA
72 5 72 343 8 0.370920741151564 14.6004402192809 45 0.362563884649001 NA 141180199 141491293 0.632546780699603 3 NA
73 5 73 5315 494 0.115285075330536 1.26523733243819 35 0.112165339747619 1.29643582604821 141491652 181260899 0.632546780699603 3 1
74 6 74 2067 209 -0.11259087210625 1.48637053640486 22 -0.113964317969947 1.45509519156525 292599 25849392 1 2 1
75 6 75 2145 412 0.00363110499492236 2.68370239181982 30 -0.00239439934259508 2.57341601052934 25849551 31980766 0.632546780699603 2 0
76 6 76 16 1 1.53582761881075 -0.114007612839674 64 1.53582761881075 NA 31980938 31997750 0.634630004772382 9 NA
77 6 77 362 74 -0.0169833747534405 2.75042654628369 30 -0.00239439934259508 2.57341601052934 32026946 32530234 0.632546780699603 2 0
78 6 78 5 5 -0.694659672254773 0.819727150239453 5 -0.682837303418078 NA 32578683 32580405 0.632546780699603 1 0
79 6 79 12 9 0.620848414307825 3.92047316524314 53 0.620848414307825 NA 32580687 32632988 0.632546780699603 3 NA
80 6 80 381 134 0.0065764331820071 2.21375942507899 30 -0.00239439934259508 2.57341601052934 32637508 33251814 0.632546780699603 2 0
81 6 81 4321 341 -0.0604948252633821 0.853077387214004 25 -0.0608884421942111 1.47485949985911 33252047 54380529 1 2 1
82 6 82 646 30 0.140365963292305 1.27024416507186 37 0.170896742501994 1.20893906153037 54380685 68943985 0.632546780699603 3 1
83 6 83 7757 602 -0.0277105414754668 0.988905719715167 29 -0.00239439934259508 1.13900186433191 68956152 149970236 1 2 1
84 6 84 7 4 0.520739595030335 0.104458552239732 52 0.545196205922169 NA 150020124 150025396 0.432613322109715 5 NA
85 6 85 2636 250 -0.0731588328985729 1.80731906791292 25 -0.0608884421942111 1.47485949985911 150025577 170584673 1 2 1
86 7 86 1585 156 0.0775319378746807 1.09643238886491 33 0.0713940829289319 1.26288676516163 193265 7521954 0.632546780699603 3 1
87 7 87 1124 74 0.23768184219804 1.61718617876647 39 0.254668421055377 1.34982221783892 7522042 21510953 0.632546780699603 3 1
88 7 88 5371 489 0.119756370372303 1.00791807808442 35 0.112165339747619 1.29643582604821 21511190 81699013 0.632546780699603 3 1
89 7 89 313 35 0.544938813885888 1.01240277381067 51 0.545196205922169 1.49106864578989 81699165 85037070 0.380553002189665 5 0
90 7 90 421 40 0.404562172345214 4.30330553414391 47 0.426594735676662 3.09206601387266 85040625 89327311 0.632546780699603 3 0
91 7 91 2500 186 0.546244988594467 0.907287129582231 51 0.545196205922169 1.49106864578989 89327557 100892701 0.380553002189665 5 0
92 7 92 188 69 0.92725890177599 1.13468798457966 57 0.912631038763622 1.13468798457966 100892927 101043698 0.634630004772382 5 1
93 7 93 1705 133 0.553017121666217 2.00367184334678 51 0.545196205922169 1.49106864578989 101043761 112487086 0.380553002189665 5 0
94 7 94 135 10 0.781273359772609 3.54069276382798 55 0.782116144265116 NA 112489760 116500498 0.43324278867802 6 NA
95 7 95 299 14 1.15802115775499 2.23628641919482 61 1.15209144167244 NA 116506020 117861365 0.634630004772382 6 NA
96 7 96 25 3 0.891697943696269 1.86405946562021 58 0.912631038763622 NA 117873348 120275847 0.494050187402577 6 NA
97 7 97 3643 315 0.261536445248472 1.1733475385841 39 0.254668421055377 1.34982221783892 120732887 144184298 0.632546780699603 3 1
98 7 98 14 2 -0.304429786063717 0.916133257338831 13 -0.320215384158286 NA 144185466 144232791 NA 2 NA
99 7 99 2057 225 0.233164232844665 1.10408118689168 39 0.254668421055377 1.34982221783892 144258847 159144893 0.632546780699603 3 1
100 8 100 3573 433 -0.284148385975669 1.1732790545144 14 -0.279018938238929 1.28140338187542 166190 32606515 1 2 1
101 8 101 549 93 -0.160895480661972 4.00746681619654 19 -0.166258204980835 2.43151388080331 32606927 32747158 0.632546780699603 2 0
102 8 102 87 6 -0.218672439948755 0.588540453754682 17 -0.225860177965647 NA 32747488 32854705 NA 2 NA
103 8 103 999 82 -0.318736556462519 3.31104185077683 12 -0.320215384158286 2.00406201693508 32854952 40015288 1 2 1
104 8 104 572 29 -0.174964753632969 1.95935011590916 19 -0.166258204980835 2.43151388080331 40015534 47294078 0.632546780699603 2 0
105 8 105 1553 68 0.188015612219632 1.56443688260367 37 0.170896742501994 1.20893906153037 47394971 67745962 0.632546780699603 3 1
106 8 106 1186 122 0.352542441818644 1.98538633683421 43 0.362563884649001 1.75199277239042 67746176 87382757 0.55160888115327 4 0
107 8 107 1022 89 0.429707789723598 0.791450479000868 46 0.426594735676662 0.830701400108519 87872813 99115849 0.632546780699603 3 1
108 8 108 2305 171 0.533448513171191 1.25946226527339 51 0.545196205922169 1.49106864578989 99121155 125436273 0.380553002189665 5 0
109 8 109 52 6 1.74404568259955 2.22641763509034 65 1.7329353988822 NA 125436410 127746918 0.634630004772382 10 NA
110 8 110 443 44 0.532148196435137 1.95996724116863 51 0.545196205922169 1.49106864578989 129748583 133047816 0.380553002189665 5 0
111 8 111 747 110 0.433007983211021 0.729358422838389 46 0.426594735676662 0.830701400108519 133047960 142841335 0.632546780699603 3 1
112 8 112 936 102 0.567960712740239 1.50538576615633 51 0.545196205922169 1.49106864578989 142846502 144415825 0.380553002189665 5 0
113 8 113 321 39 0.504830243260988 0.0691890427595365 49 0.500571361176962 0.0691890427595365 144415944 145054141 0.529246435625175 4 2
114 9 114 2097 217 -0.326698222227601 1.82431912892774 12 -0.320215384158286 2.00406201693508 14889 21481795 1 2 1
115 9 115 137 11 -0.702582287833114 1.56030180338138 5 -0.682837303418078 NA 21797660 22009211 0.632546780699603 1 0
116 9 116 225 20 -0.312619931789896 1.24033355500129 12 -0.320215384158286 2.00406201693508 22009548 27565554 1 2 1
117 9 117 1280 95 0.0252058496640864 1.47784688959202 28 -0.00239439934259508 1.63361974617986 27565671 36036976 1 2 1
118 9 118 2348 181 -0.134623022443548 0.95994258606447 23 -0.113964317969947 0.959065966039464 36037120 84850788 1 2 1
119 9 119 3056 243 -0.019592549104522 1.41816623135351 29 -0.00239439934259508 1.13900186433191 84851037 107010864 1 2 1
120 9 120 2699 205 -0.16122117425417 1.32347031668786 18 -0.166258204980835 1.23675683074399 107011069 125233577 1 2 1
121 9 121 5048 428 -0.0697279577895807 1.35934065425392 25 -0.0608884421942111 1.47485949985911 125233906 138221146 1 2 1
122 10 122 789 104 -0.118267795839537 1.60552470006534 22 -0.113964317969947 1.45509519156525 47050 7616126 1 2 1
123 10 123 710 69 -0.24850164545283 2.67385793251011 15 -0.225860177965647 1.63679355171048 7617086 15109850 1 2 1
124 10 124 1224 103 -0.122038572964508 1.45203958087367 22 -0.113964317969947 1.45509519156525 15109908 26720462 1 2 1
125 10 125 1037 134 -0.0441884422286049 1.77312753252786 25 -0.0608884421942111 1.47485949985911 26723830 38016139 1 2 1
126 10 126 440 46 0.0223081689024644 0.822068100496501 29 -0.00239439934259508 1.13900186433191 38016758 45817171 1 2 1
127 10 127 6 3 1.03121846531171 7.28692308898736 60 1.02150683780411 NA 45826079 45827145 0.634630004772382 6 NA
128 10 128 79 8 0.0781939353583635 1.71034550021197 34 0.0713940829289319 NA 45827480 46381180 NA 2 NA
129 10 129 107 8 0.316801094924297 0.262815303190041 42 0.305012481607471 NA 46382647 47523541 0.322183312090724 4 NA
130 10 130 23 0 1.01069918282068 0 60 1.02150683780411 NA 47922379 48184901 0.634630004772382 6 NA
131 10 131 182 34 0.109937076618645 1.72499056140572 35 0.112165339747619 1.29643582604821 48185629 48914279 0.632546780699603 3 1
132 10 132 3419 297 -0.0546695580344026 1.56639239794946 25 -0.0608884421942111 1.47485949985911 48941834 79706254 1 2 1
133 10 133 13 1 1.12927955983485 12.5668593659414 61 1.15209144167244 NA 79706653 79841765 0.634630004772382 6 NA
134 10 134 13 2 -0.959307103570896 0.942079847350626 2 -0.959307103570896 NA 79842079 79850615 0.632546780699603 1 0
135 10 135 5197 476 -0.0639080423032123 1.32407059369426 25 -0.0608884421942111 1.47485949985911 79937956 112432527 1 2 1
136 10 136 2452 239 -0.133945148852008 1.00293540503822 23 -0.113964317969947 0.959065966039464 112433330 128123097 1 2 1
137 10 137 647 87 -0.332203944758167 0.994000863749749 12 -0.320215384158286 2.00406201693508 128125563 133531609 1 2 1
138 10 138 40 19 -0.171780430512154 2.01470649382613 19 -0.166258204980835 2.43151388080331 133531836 133626801 0.632546780699603 2 0
139 11 139 1777 233 -0.168898127458427 1.16903317039574 18 -0.166258204980835 1.23675683074399 193112 4138359 1 2 1
140 11 140 829 135 0.0222162964915202 0.806848902682472 29 -0.00239439934259508 1.13900186433191 4367476 6932457 1 2 1
141 11 141 3971 365 -0.154079268040621 1.47597398728783 18 -0.166258204980835 1.23675683074399 6932796 44938375 1 2 1
142 11 142 149 4 0.204634354723741 2.08320653144303 38 0.170896742501994 NA 45095873 45949426 0.442870633786998 3 NA
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273 rows