File Info
- Filename
- 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1.qc.txt
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0024/tools_recal_facets_tnseq_hrd__3585e3bf--20260226-133635/variant_calling/hrd/TiH/1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1/FACETS/1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1.qc.txt
- Size
- 1.5 KB
- Workflow Run
- nobles_exp024_recal_n7_hrd_update_01
- Published
- Feb 26, 2026 10:01 AM
Content
View in new tabsample cval dipLogR_flag n_alternative_dipLogR wgd fga n_dip_bal_segs frac_dip_bal_segs n_dip_imbal_segs frac_dip_imbal_segs n_amps n_homdels frac_homdels n_homdels_clonal frac_homdels_clonal n_cn_states n_segs n_cnlr_clusters n_lcn_na n_loh frac_loh n_segs_subclonal frac_segs_subclonal n_segs_below_dipLogR frac_below_dipLogR n_segs_balanced_odd_tcn frac_balanced_odd_tcn n_segs_imbalanced_diploid_cn frac_imbalanced_diploid_cn n_segs_lcn_greater_mcn frac_lcn_greater_mcn n_snps n_het_snps frac_het_snps n_snps_with_300x_in_tumor n_het_snps_with_300x_in_tumor n_het_snps_hom_in_tumor_1pct n_het_snps_hom_in_tumor_5pct frac_het_snps_hom_in_tumor_1pct frac_het_snps_hom_in_tumor_5pct mean_cnlr_residual sd_cnlr_residual n_segs_discordant_tcn frac_discordant_tcn n_segs_discordant_lcn frac_discordant_lcn n_segs_discordant_both frac_discordant_both n_segs_icn_cnlor_discordant frac_icn_cnlor_discordant mafr_median_all mafr_median_clonal mafr_n_gt_1 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 200 FALSE 0 TRUE 0.7 2 0.014 5 0.019 5 19 0.005 19 0.005 25 117 34 12 35 0.09 1 0.0013 25 0.0083 11 0.12 0 0 62 0.65 255159 15853 0.062 151510 10055 50 106 0.0032 0.0067 -0.014 0.75 51 0.61 1185140847 0.43 26 0.43 37 0.33 0.078 0.076 2 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 50 FALSE 0 TRUE 0.75 10 0.021 15 0.021 43 47 0.019 34 0.015 32 723 63 338 149 0.15 258 0.55 160 0.1 29 0.029 4 0.0053 105 0.27 255159 15853 0.062 151510 10055 50 106 0.0032 0.0067 -0.02 0.72 108 0.15 282386248 0.12 30 0.12 58 0.12 0.068 0.083 8