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1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1.qc.txt
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0024/tools_recal_facets_tnseq_hrd__3585e3bf--20260226-133635/variant_calling/hrd/TiH/1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1/FACETS/1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1.qc.txt
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Feb 26, 2026 10:01 AM
sample	cval	dipLogR_flag	n_alternative_dipLogR	wgd	fga	n_dip_bal_segs	frac_dip_bal_segs	n_dip_imbal_segs	frac_dip_imbal_segs	n_amps	n_homdels	frac_homdels	n_homdels_clonal	frac_homdels_clonal	n_cn_states	n_segs	n_cnlr_clusters	n_lcn_na	n_loh	frac_loh	n_segs_subclonal	frac_segs_subclonal	n_segs_below_dipLogR	frac_below_dipLogR	n_segs_balanced_odd_tcn	frac_balanced_odd_tcn	n_segs_imbalanced_diploid_cn	frac_imbalanced_diploid_cn	n_segs_lcn_greater_mcn	frac_lcn_greater_mcn	n_snps	n_het_snps	frac_het_snps	n_snps_with_300x_in_tumor	n_het_snps_with_300x_in_tumor	n_het_snps_hom_in_tumor_1pct	n_het_snps_hom_in_tumor_5pct	frac_het_snps_hom_in_tumor_1pct	frac_het_snps_hom_in_tumor_5pct	mean_cnlr_residual	sd_cnlr_residual	n_segs_discordant_tcn	frac_discordant_tcn	n_segs_discordant_lcn	frac_discordant_lcn	n_segs_discordant_both	frac_discordant_both	n_segs_icn_cnlor_discordant	frac_icn_cnlor_discordant	mafr_median_all	mafr_median_clonal	mafr_n_gt_1
1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1	200	FALSE	0	TRUE	0.7	2	0.014	5	0.019	5	19	0.005	19	0.005	25	117	34	12	35	0.09	1	0.0013	25	0.0083	11	0.12	0	0	62	0.65	255159	15853	0.062	151510	10055	50	106	0.0032	0.0067	-0.014	0.75	51	0.61	1185140847	0.43	26	0.43	37	0.33	0.078	0.076	2
1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1	50	FALSE	0	TRUE	0.75	10	0.021	15	0.021	43	47	0.019	34	0.015	32	723	63	338	149	0.15	258	0.55	160	0.1	29	0.029	4	0.0053	105	0.27	255159	15853	0.062	151510	10055	50	106	0.0032	0.0067	-0.02	0.72	108	0.15	282386248	0.12	30	0.12	58	0.12	0.068	0.083	8