sample run_type purity ploidy dipLogR facets_version cval snp_nbhd min_nhet ndepth mdepth genome seed flags input_file genome_doubled fraction_cna hypoploid fraction_loh lst ntai hrd_loh
1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 purity 0.21 4.3 -0.31 0.6.2 200 250 15 35 3000 hg38 100 mafR larger than expected if -0.0792881015741229 is diploid level; not consistent for 1 copy loss from diploid in segclust: 7, 8, 13, 14, 15, 17, 29, 30 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1.pileup.csv.gz TRUE 0.7 FALSE 0.054 17 22 4
1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 hisens 0.4 3.2 -0.31 0.6.2 50 250 15 35 3000 hg38 100 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1.pileup.csv.gz TRUE 0.75 FALSE 0 26 31 4