File Info
- Filename
- 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1.gene_level.txt
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0024/tools_recal_facets_tnseq_hrd__3585e3bf--20260226-133635/variant_calling/hrd/TiH/1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1/FACETS/1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1.gene_level.txt
- Size
- 4.2 MB
- Workflow Run
- nobles_exp024_recal_n7_hrd_update_01
- Published
- Feb 26, 2026 10:01 AM
Content
View in new tabsample gene chrom gene_start gene_end tsg seg median_cnlr_seg segclust seg_start seg_end cf.em tcn.em lcn.em cf tcn lcn seg_length mcn genes_on_seg gene_snps gene_het_snps spans_segs cn_state filter 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 A1BG 19 58345178 58353499 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 12 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 A1CF 10 50799409 50885675 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 A2M 12 9067664 9116229 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 37 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 A2ML1 12 8822472 8887001 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 38 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 A3GALT2 1 33306766 33321098 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 A4GALT 22 42692112 42721298 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 4 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 A4GNT 3 138123718 138132387 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 5 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AAAS 12 53307456 53324864 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AACS 12 125065379 125143333 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AADAC 3 151814037 151828488 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AADACL2 3 151733916 151761339 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 8 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AADACL3 1 12716115 12728759 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 6 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AADACL4 1 12644547 12667086 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AADAT 4 170060222 170091699 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AAGAB 15 67201033 67255195 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 11 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AAK1 2 69457997 69674349 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AAMDC 11 77821109 77918432 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AAMP 2 218264123 218270257 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AANAT 17 76453351 76470117 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AAR2 20 36236459 36270918 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AARD 8 116938199 116944487 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AARS 16 70252295 70289543 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AARS2 6 44299654 44313326 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AARSD1 17 42950526 42964498 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AASDH 4 56338287 56387508 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 21 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AASDHPPT 11 106075501 106098710 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AASS 7 122075647 122144280 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AATF 17 36948875 37056871 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AATK 17 81117295 81166077 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 23 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABAT 16 8674565 8784575 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 16 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCA1 9 104781002 104928237 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 52 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCA10 17 69147214 69244846 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 36 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCA12 2 214931542 215138428 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 57 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCA13 7 48171458 48647496 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 90 10 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCA2 9 137007227 137028922 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 53 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCA3 16 2275881 2340746 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 37 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCA4 1 93992835 94121132 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 52 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCA5 17 69244311 69327244 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 39 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCA6 17 69078702 69141888 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 39 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCA7 19 1040101 1065572 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 52 14 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCA8 17 68867292 68955392 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 39 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCA9 17 68974488 69061064 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 39 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCB1 7 87503633 87713323 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 42 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCB10 1 229516582 229558695 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCB11 2 168915498 169031324 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 31 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCB4 7 87401697 87480435 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 31 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCB5 7 20615207 20777038 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 31 4 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCB6 2 219209766 219219017 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 21 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCB7 23 75051554 75156732 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 18 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCB8 7 151028422 151047782 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 19 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCB9 12 122920951 122981649 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 34 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCC1 16 15949577 16143074 FALSE 520 0.439189613580741 103 15617487 16203579 0.397448435712946 5 NA 0.397448435712946 5 NA 586092 NA 7 35 4 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCC10 6 43427366 43450430 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 28 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCC11 16 48166910 48247568 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 34 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCC12 16 48081006 48156018 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 31 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCC2 10 99782640 99852594 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 33 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCC3 17 50634777 50692252 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 38 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCC4 13 95019829 95301475 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 32 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCC5 3 183919934 184018015 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 32 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCC6 16 16148928 16223522 FALSE 520 0.439189613580741 103 15617487 16203579 0.397448435712946 5 NA 0.397448435712946 5 NA 586092 NA 7 35 3 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCC8 11 17392498 17476879 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 40 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCC9 12 21797401 21942529 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 41 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCD1 23 153724868 153744762 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCD2 12 39550033 39619751 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCD3 1 94418455 94518666 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCD4 14 74285423 74303056 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 19 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCE1 4 145097932 145129179 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCF1 6 30571376 30597179 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 24 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCF2 7 151212490 151227230 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCF3 3 184186023 184194012 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 19 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCG1 21 42199689 42297244 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCG2 4 88090264 88231322 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 16 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCG4 11 119149012 119162653 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCG5 2 43812472 43838865 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 16 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABCG8 2 43831942 43882987 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 18 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD1 2 27123789 27130812 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD10 3 111979010 111993363 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD11 7 73736094 73738867 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD12 20 25294743 25390983 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD12B 14 50872160 50904970 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 13 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD13 13 108218379 108234255 FALSE 441 -0.133025597356164 67 102840913 109206723 0.31995059840763 3 NA 0.31995059840763 3 NA 6365810 NA 12 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD14A 3 51971426 51981199 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD14A-ACY1 3 51974706 51989183 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 17 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD14B 3 51968510 51983409 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD15 17 29560547 29567137 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD16A 6 31686949 31703444 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 20 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD16B 20 63861498 63862988 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD17A 19 1876810 1885547 FALSE 591 -0.292096165521122 44 1753671 2129102 0.213873728132233 2 0 0.213873728132233 2 0 375431 2 13 7 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD17B 9 71862452 71910931 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD17C 15 80679684 80755621 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD18 4 127965306 128039927 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD2 15 89087459 89202360 FALSE 499 -0.326925020976481 44 88857449 89702022 0.213873728132233 2 0 0.213873728132233 2 0 844573 2 13 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD3 18 21650897 21704805 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD4 14 22598237 22613215 FALSE 447 -0.170207348033168 62 21570031 22633768 0.235629703240478 3 NA 0.235629703240478 3 NA 1063737 NA 7 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD5 3 43690108 43734371 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD6 3 58237506 58295693 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABHD8 19 17292131 17310236 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 10 1 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABI1 10 26746593 26861087 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABI2 2 203328219 203447723 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABI3 17 49210227 49223225 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABI3BP 3 100749156 100993515 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 66 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABL1 9 130713946 130887675 FALSE 303 1.11463368181047 116 130713294 130887622 0.397448435712946 11 NA 0.397448435712946 11 NA 174328 NA 1 33 4 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABL2 1 179099327 179229684 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 52 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABLIM1 10 114431113 114685003 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABLIM2 4 7965310 8158832 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 23 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABLIM3 5 149141483 149260542 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABO 9 133250401 133275219 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 6 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABR 17 1003518 1229738 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 31 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABRA 8 106759483 106770245 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABRACL 6 139028682 139043302 FALSE 220 0.0543375783167098 82 138298662 142443515 0.298111653356898 4 NA 0.298111653356898 4 NA 4144853 NA 16 2 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABRAXAS1 4 83459517 83523348 TRUE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABRAXAS2 10 124801785 124836670 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 10 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABT1 6 26596952 26600744 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABTB1 3 127672935 127680920 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ABTB2 11 34150988 34358008 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC000120.2 7 92112159 92179511 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 22 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC000120.3 7 92131774 92245924 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 31 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC001226.2 13 76992078 77129589 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 56 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC002094.3 17 28364288 28368012 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC002310.4 16 30534227 30558279 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC002310.5 16 30525923 30534852 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC002985.1 19 18907013 18934397 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC002996.1 12 111753890 111791418 FALSE 421 -0.0176554379426518 77 111455010 112163629 0.252310779181821 4 NA 0.252310779181821 4 NA 708619 NA 11 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC003002.1 19 57363566 57398584 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC003002.2 19 57394183 57438457 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 20 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC003002.3 19 57389884 57419994 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC003005.1 19 57487718 57505381 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 12 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC003006.1 19 57682045 57753575 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 28 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC003688.1 17 7246829 7262089 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC004076.1 19 57437970 57477536 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 24 2 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC004080.3 7 27163535 27180013 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 10 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC004593.3 7 29122340 29514667 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 20 4 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC004687.2 17 58345206 58417595 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 45 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC004691.2 7 30852273 30923812 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 15 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC004754.1 16 249547 269943 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 16 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC004805.1 17 65538102 65641033 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC004832.3 22 30409255 30428990 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC004922.1 7 99325879 99394653 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC004997.1 22 30285238 30299482 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005020.2 7 99558695 99607810 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005041.1 2 74393836 74421662 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005154.5 7 30497077 30550761 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 5 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005258.1 19 2269525 2341172 FALSE 593 -0.414090744354779 39 2233974 2403179 NA 2 NA NA 2 NA 169205 NA 11 31 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005324.3 17 15571491 15651653 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 23 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005324.4 17 15699692 15744778 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 19 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005520.1 14 73851971 73932278 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 21 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005670.2 17 46923133 47049932 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005697.1 17 27798806 27893365 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005702.1 17 59940908 59973101 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 27 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005726.1 17 28455752 28614197 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 91 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005779.2 19 45179822 45202444 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 1 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005832.4 12 4604944 4662643 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 24 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005833.1 12 4649101 4774184 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 23 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005837.2 17 76732978 76738522 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC005943.1 19 1578339 1605445 FALSE 589 -0.44786516347233 39 1398963 1609436 NA 2 NA NA 2 NA 210473 NA 14 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC006030.1 2 74211604 74363377 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 34 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC006059.2 3 42705756 42804518 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 22 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC006064.6 12 6556886 6607367 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 64 5 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC006254.1 3 52813282 52835729 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC006486.1 19 42234583 42255132 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 15 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC006518.7 12 10881011 10884255 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC006538.2 19 2717769 2740048 FALSE 595 -0.450163878767581 39 2732975 3094339 NA 2 NA NA 2 NA 361364 NA 12 5 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC007040.2 2 70939318 70995336 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 31 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC007192.1 19 18153158 18178117 FALSE 634 1.19865967518225 118 18153185 18173594 0.397448435712946 11 NA 0.397448435712946 11 NA 20409 NA 3 36 4 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC007240.1 2 10122739 10199288 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC007326.4 22 18906238 18947732 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC007375.1 14 77098311 77225462 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 13 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC007731.5 22 20429241 20446620 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC007998.2 18 35443871 35497940 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008012.1 12 4273762 4405490 FALSE 378 0.86368839094413 113 4269828 4445792 0.397448435712946 8 NA 0.397448435712946 8 NA 175964 NA 5 50 6 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008073.3 2 24124366 24190436 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 14 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008397.2 19 18207961 18255419 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 18 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008403.1 19 48465837 48472431 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008481.3 19 11466240 11505698 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008537.1 19 40801297 40898282 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 23 8 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008575.1 5 112827213 112867582 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 44 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008581.2 5 77030902 77152155 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 18 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008676.3 5 157341596 157460100 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008687.1 19 49022953 49036895 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008687.8 19 49055793 49065076 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008695.1 5 131425891 131796983 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 60 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008750.8 19 51350373 51368099 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008758.1 19 12461559 12551474 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 18 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008758.4 19 12379189 12401274 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008758.5 19 12391949 12441082 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 14 6 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008758.6 19 12433103 12484816 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 9 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008763.2 19 7629796 7643048 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 20 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008763.3 19 7678501 7682854 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 6 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008764.1 19 16479067 16628204 FALSE 629 -0.412926938873791 39 16377140 16841876 NA 2 NA NA 2 NA 464736 NA 12 59 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008764.4 19 16577642 16660115 FALSE 629 -0.412926938873791 39 16377140 16841876 NA 2 NA NA 2 NA 464736 NA 12 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008770.1 19 12017888 12052967 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008770.2 19 11925075 11979290 FALSE 617 -0.416153402896496 39 11614810 11948366 NA 2 NA NA 2 NA 333556 NA 9 16 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008878.1 19 7507052 7519622 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008878.2 19 7533595 7540059 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008878.3 19 7382834 7472477 FALSE 607 0.372981718355934 101 7112582 7440096 0.397448435712946 5 NA 0.397448435712946 5 NA 327514 NA 4 24 4 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC008982.1 19 38817471 38840178 FALSE 646 -0.00229584309761491 77 38714572 38869416 0.252310779181821 4 NA 0.252310779181821 4 NA 154844 NA 9 10 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC009086.2 16 29663279 29695144 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC009119.2 16 83908132 83951445 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC009133.6 16 29812261 29820092 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC009163.2 16 75528532 75545428 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC009163.4 16 75412684 75464706 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC009336.2 2 176151085 176173097 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 10 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC009690.1 15 72284727 72375981 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 26 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC009690.3 15 72266746 72319946 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC009879.2 8 66430185 66445324 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC009879.3 8 66432486 66518524 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 20 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010132.3 7 42909273 42932174 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010197.2 12 21536203 21657798 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 24 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010255.3 5 122129622 122183949 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010319.2 19 17436611 17460804 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 7 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010323.1 19 8308283 8321379 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010325.1 19 50776141 50793142 FALSE 671 0.319009489173821 99 50630099 50948696 0.361681390833996 5 NA 0.361681390833996 5 NA 318597 NA 14 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010326.2 19 57876765 57916591 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010327.1 19 55154757 55160671 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010422.3 19 12643831 12648397 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010422.5 19 12664828 12669397 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 7 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010422.6 19 12525720 12580975 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 11 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010422.8 19 12668071 12681834 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 21 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010463.1 19 17267418 17282966 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 14 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010487.3 19 52880663 52962768 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 20 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010522.1 19 57819719 57858941 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010531.1 16 87302876 87334273 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010542.3 16 66469812 66517312 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010547.4 16 71447600 71489311 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 17 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010615.4 19 21405159 21491266 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 3 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010616.2 19 41956879 41994232 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 31 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010619.1 19 49462752 49486231 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC010646.1 19 17235940 17255448 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 9 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC011330.3 15 43614208 43632283 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 6 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC011448.1 19 19516227 19536076 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC011452.1 19 49909501 49958391 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC011455.2 19 38915404 38949855 FALSE 647 -0.439700824472697 39 38869641 39110047 NA 2 NA NA 2 NA 240406 NA 10 23 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC011462.1 19 41350853 41425001 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 32 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC011473.4 19 50996018 51009581 FALSE 672 0.353803789056783 101 50949075 51024637 0.397448435712946 5 NA 0.397448435712946 5 NA 75562 NA 8 12 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC011479.1 19 38289151 38304910 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC011498.4 19 4528427 4540067 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC011499.1 19 5784005 5785619 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC011511.1 19 10305427 10316009 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC011511.4 19 10315471 10320678 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC011530.1 19 45779437 45785973 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC011604.2 12 20815674 21090245 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 28 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC012184.2 16 70299194 70372582 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC012213.5 8 103398658 103501895 FALSE 273 0.0471800530858091 82 102651830 103432781 0.298111653356898 4 NA 0.298111653356898 4 NA 780951 NA 9 20 3 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC012254.2 18 47108188 47176345 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC012309.1 19 37093019 37210512 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 26 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC012476.1 15 40695129 40732158 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 21 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC012531.2 12 53985845 54034888 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC012651.1 15 42348103 42412317 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 30 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC013394.1 15 92883413 92949230 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC013489.1 15 88459501 88546585 FALSE 497 0.0345658149407989 77 88130833 88530744 0.252310779181821 4 NA 0.252310779181821 4 NA 399911 NA 5 22 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC013717.1 2 44168851 44320310 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 22 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC015688.4 17 27623364 27640777 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC015802.6 17 76563710 76570544 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 3 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC015813.2 17 57989038 58007246 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC017083.3 2 68131238 68261230 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 23 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC018362.3 15 42497395 42548786 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 13 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC018512.1 15 43772617 43799133 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 25 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC018523.2 11 14493783 14520344 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC018554.3 16 60358455 60359480 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC018709.1 4 186426546 186555328 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC018755.2 19 51612091 51646889 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 18 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC019117.2 7 17299295 17467234 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 15 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC020636.2 3 150882997 150941743 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC020907.6 19 35106510 35124297 FALSE 640 -0.147583171664558 62 34943608 35134626 0.235629703240478 3 NA 0.235629703240478 3 NA 191018 NA 8 8 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC020909.1 19 50415799 50428409 FALSE 669 0.813634959401384 112 50382408 50417278 0.397448435712946 8 NA 0.397448435712946 8 NA 34870 NA 3 12 1 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC020915.1 19 58278966 58315197 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC020915.5 19 58228914 58315183 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 23 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC020922.1 19 55352301 55359516 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC021097.2 7 151207837 151227166 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC021097.3 7 151207837 151210378 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 1 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC021660.3 3 98521133 98585498 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC022335.1 12 21047179 21176895 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 10 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC022384.1 3 10249372 10285796 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC022400.6 10 73796514 73811651 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 35 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC022414.1 5 77086732 77427124 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC022826.2 8 73688691 73878854 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC023055.1 12 55757275 55827546 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC023509.3 12 53506688 53625979 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC024592.3 19 5866171 5903787 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 11 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC025165.3 12 57773028 57787046 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 8 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC025263.2 12 69801669 69855363 FALSE 415 0.0296903115421813 74 69585546 71157651 0.246063395031215 4 2 0.246063395031215 4 2 1572105 2 11 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC025283.2 16 3382113 3397745 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC025283.3 16 3365099 3479550 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 30 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC026316.5 3 170418868 170860380 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC026398.1 5 131807143 131994278 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 32 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC026464.1 16 69335276 69351730 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 13 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC026464.3 16 69335091 69356306 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 14 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC026464.4 16 69299682 69322700 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC026464.6 16 69328644 69334871 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC026786.1 12 133130984 133202369 FALSE 428 -0.308400004626836 46 132869854 133234366 NA 2 NA NA 2 NA 364512 NA 10 15 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC026954.2 17 7312661 7319174 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 19 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC027644.4 7 66628958 66811189 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC027796.3 17 3585149 3636249 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 18 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC034102.2 12 56101331 56109289 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC036214.3 8 79918860 80080775 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC037459.1 8 22589274 22602084 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC040162.1 16 67929614 67936017 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC046185.1 17 63702845 63752097 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC048338.1 12 122207779 122266423 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC055811.2 17 17202649 17237185 FALSE 544 -0.432476680468626 39 16223200 17212252 NA 2 NA NA 2 NA 989052 NA 14 35 7 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC058822.1 4 53377839 54295272 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 97 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC067752.1 10 62520448 62672011 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC067968.1 19 44025354 44087318 FALSE 658 -0.851985286972629 23 43847684 44144686 0.307934776518021 0 0 0.307934776518021 0 0 297002 0 13 28 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC068234.1 17 47253897 47344292 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 21 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC068533.4 7 66087761 66152277 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC068547.1 2 151802651 151973949 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC068580.4 11 1734821 1763954 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC068631.2 3 186581995 186597103 FALSE 135 0.383017234579865 101 186047790 186677676 0.397448435712946 5 NA 0.397448435712946 5 NA 629886 NA 9 5 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC068775.1 12 10412312 10436001 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 12 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC068790.8 12 123973944 124088594 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC068831.7 15 90966190 91022566 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 38 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC068896.1 10 124617080 124791727 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC068946.1 2 219075329 219170827 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 20 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC068946.2 2 219209772 219222738 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 28 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC069257.3 3 196248230 196318222 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC069368.1 15 64841883 64930920 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC069444.2 3 119703076 119807570 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC069503.2 12 121888809 121921470 FALSE 423 -0.315985647593647 46 121839804 122003686 NA 2 NA NA 2 NA 163882 NA 4 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC073082.1 2 48632291 48755724 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 24 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC073111.3 7 150368790 150396915 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 10 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC073283.3 2 47065941 47176511 FALSE 59 -0.32871660107588 46 46484402 47170815 NA 2 NA NA 2 NA 686413 NA 11 17 1 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC073508.2 17 40627356 40665141 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 58 5 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC073610.2 12 48921963 48939663 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC073610.3 12 48903503 48957365 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC073612.1 12 71674204 71698968 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC073896.1 12 56285916 56316059 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC074143.1 16 67163385 67165815 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC078927.1 12 66123917 66169985 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC079447.1 2 99141485 99322741 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 33 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC079594.2 3 160227454 160449829 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 51 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC083800.1 3 119147375 119187807 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC084337.2 11 6481485 6508978 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 7 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC087289.3 17 75898645 75930129 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 35 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC087632.1 15 64181180 64381440 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC087721.2 15 41284013 41380743 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 17 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC090004.1 3 14135217 14148252 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 7 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC090227.1 18 49795793 49837623 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC090360.1 18 80034346 80097088 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC090517.4 15 56652488 56918571 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC090527.2 15 45587351 45676314 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC091057.6 15 30624548 30685606 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC091167.2 15 90249556 90272208 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC091167.6 15 90266317 90314499 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC091167.7 15 90234200 90265462 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC091551.1 18 50968019 51058144 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC091959.3 5 146203550 146339251 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC092017.3 1 211082872 211188533 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC092042.3 3 42809446 43055871 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 33 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC092073.1 19 34396315 34409364 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC092111.3 12 8138140 8175320 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC092143.1 16 89919165 89936092 FALSE 535 0.126990432456591 86 89733549 90075852 0.360033220093454 4 NA 0.360033220093454 4 NA 342303 NA 12 17 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC092329.3 19 23222755 23274221 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 4 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC092442.1 4 6064977 6070162 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 1 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC092587.1 2 99154998 99195298 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 16 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC092647.5 7 55887277 55955239 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC092718.3 16 81053587 81096296 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC092718.8 16 81022316 81096284 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC093155.3 1 86993009 87169204 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC093227.2 19 37689865 37719188 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC093423.3 1 89633140 89933250 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC093512.2 16 30053090 30070420 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC093525.1 16 2513965 2527955 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC093525.2 16 2496032 2520218 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC093668.1 7 102541501 102592444 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC093668.2 7 102483344 102543764 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC093668.3 7 102538417 102543849 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 1 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC093827.5 4 86886472 86936178 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC093899.2 2 169479480 169525922 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 22 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC096887.1 3 52969119 53099453 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 4 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC097104.1 12 56449700 56488170 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 28 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC097625.1 23 15561047 15675608 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 24 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC097634.4 3 70959226 71754229 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 57 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC097636.1 3 51798803 51830856 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC097637.1 3 52221081 52231190 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 18 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC098484.3 1 42767292 42794493 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC098582.1 4 88523810 88649847 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 1 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC098588.1 4 144210701 145098174 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC098650.1 3 28349178 29767537 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC098850.3 17 16690261 16804453 FALSE 544 -0.432476680468626 39 16223200 17212252 NA 2 NA NA 2 NA 989052 NA 14 27 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC099811.2 17 42119674 42154916 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC099850.2 17 59197566 59215226 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 16 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC100868.1 8 132024238 132085655 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 24 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC104109.3 5 134167170 134226071 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC104151.1 16 76553417 76819624 FALSE 530 0.0863261484312413 82 76522085 80684905 0.298111653356898 4 NA 0.298111653356898 4 NA 4162820 NA 12 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC104304.1 3 46581150 46617226 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC104389.4 11 5254392 5678434 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 98 14 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC104389.5 11 5248270 5254783 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 5 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC104452.1 3 49416777 49429314 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC104472.3 3 155763043 155854442 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 15 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC104532.1 19 5904841 5914707 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC104581.2 17 7925931 7930622 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC104662.2 4 25160663 25277306 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC105052.1 7 102582523 102642869 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC105052.3 7 102637049 102671641 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 4 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC106886.5 16 30704067 30745169 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 54 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC107871.1 15 68184032 68229718 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 15 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC107959.5 8 23084403 23115536 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC108488.2 2 3531984 3547957 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 1 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC108941.2 4 69810780 69847786 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC109583.3 3 46742092 46812558 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC110275.1 8 43018424 43077334 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC112128.1 3 113361901 113515151 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 41 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC112504.2 3 141738474 141807919 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC113348.2 5 178694605 178729335 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC113554.1 17 63484823 63521848 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 17 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC114490.2 1 34981533 35031741 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC114490.3 1 34974356 34985313 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC116366.3 5 132410832 132646079 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 94 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC117378.1 12 56714612 56741535 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC117457.1 3 178419123 178843300 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC118470.1 1 247711813 247723764 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 7 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC118549.1 1 77562416 77683419 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC118553.2 1 99970011 100083321 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC119674.2 1 56173433 56524495 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC120057.2 17 7240427 7244635 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC120114.4 16 29817239 29830627 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC124312.1 15 24955034 25000276 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC126283.2 4 109713916 109801999 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 20 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC127029.3 17 63917203 63931385 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC129492.3 17 8150816 8162975 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC131160.1 3 183815568 183884889 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC134669.1 17 31305213 31318831 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC134980.3 15 22015233 22095857 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC135050.2 16 31083439 31094956 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC135178.2 17 8368638 8383187 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC137834.1 12 57249609 57296484 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 19 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC138696.1 8 143247110 143276403 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC138811.2 16 18788063 18801519 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC138894.1 16 28456371 28492098 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC139491.7 5 176063748 176126959 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 16 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC139530.2 17 81703371 81720539 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 18 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC140504.1 16 15395754 15515348 FALSE 519 -0.0068915740419202 77 14482806 15617149 0.252310779181821 4 NA 0.252310779181821 4 NA 1134343 NA 15 8 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC142391.1 5 139442316 139462707 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC144573.1 8 37934340 37965953 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 13 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC187653.1 7 290170 294422 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 4 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC233992.2 8 144353228 144355609 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC235565.2 23 102360395 102471812 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC239799.1 1 146113652 146229000 FALSE 28 -2.04260818888899 6 146066363 146964433 0.397448435712946 0 0 0.397448435712946 0 0 898070 0 5 9 3 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC243547.3 1 145927258 145977811 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC243967.1 19 41708612 41761282 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 18 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC244197.3 23 149482543 149533935 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC244517.10 5 141223372 141245861 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 11 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC245033.1 15 82536788 82573194 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 13 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC245748.1 19 44329695 44401608 FALSE 659 -0.801689271107813 24 44148801 44524243 0.39968910724052 1 0 0.39968910724052 1 0 375442 1 11 15 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AC253536.7 22 23971378 23980469 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACAA1 3 38103129 38137242 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 31 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACAA2 18 49782167 49813960 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACACA 17 37084988 37406818 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 67 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACACB 12 109116595 109268226 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 56 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACAD10 12 111686056 111757107 FALSE 421 -0.0176554379426518 77 111455010 112163629 0.252310779181821 4 NA 0.252310779181821 4 NA 708619 NA 11 21 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACAD11 3 132558138 132660723 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 26 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACAD8 11 134253495 134265855 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACAD9 3 128879596 128916067 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACADL 2 210187939 210225491 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 11 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACADM 1 75724347 75787575 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACADS 12 120725735 120740008 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 11 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACADSB 10 123008979 123058311 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACADVL 17 7217125 7225273 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 19 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACAN 15 88803442 88875354 FALSE 498 -0.51213719589399 35 88530880 88857136 0.252021069663427 1 0 0.252021069663427 1 0 326256 1 5 40 5 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACAP1 17 7336529 7351478 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 22 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACAP2 3 195274736 195443078 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACAP3 1 1292376 1309609 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 26 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACAT1 11 108121516 108147776 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACAT2 6 159760328 159779055 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACBD3 1 226144679 226186730 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACBD4 17 45132600 45144181 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACBD5 10 27195214 27242130 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACBD6 1 180269653 180502954 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACBD7 10 15077523 15088776 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACCS 11 44065925 44084222 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACCSL 11 44047981 44059977 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACD 16 67657512 67660815 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACE 17 63477061 63498380 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 31 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACE2 23 15561033 15602148 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 18 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACER1 19 6306142 6333629 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACER2 9 19409059 19452020 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACER3 11 76860867 77026797 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACHE 7 100889994 100896974 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 10 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACIN1 14 23058564 23095614 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 29 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACKR1 1 159203307 159206500 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 6 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACKR2 3 42804752 42887974 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACKR3 2 236567787 236582358 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACKR4 3 132597237 132618967 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACLY 17 41866908 41930542 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 29 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACMSD 2 134838547 134902034 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACO1 9 32384603 32454769 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 20 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACO2 22 41469125 41528989 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOD1 13 76948497 76958642 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOT1 14 73537114 73543794 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 6 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOT11 1 54542257 54639192 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 28 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOT12 5 81330005 81394179 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOT13 6 24667035 24705065 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOT2 14 73567620 73575658 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 7 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOT4 14 73591706 73596496 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 6 2 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOT6 14 73610945 73619888 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 4 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOT7 1 6264269 6394391 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOT8 20 45841721 45857406 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOT9 23 23702253 23766475 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 16 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOX1 17 75941507 75979363 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 15 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOX2 3 58505136 58537319 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 16 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOX3 4 8366282 8440723 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 17 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACOXL 2 110732573 111118222 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACP1 2 264140 278283 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 6 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACP2 11 47239302 47248906 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACP4 19 50790415 50795224 FALSE 671 0.319009489173821 99 50630099 50948696 0.361681390833996 5 NA 0.361681390833996 5 NA 318597 NA 14 11 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACP5 19 11574660 11579008 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACP6 1 147629652 147670496 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACP7 19 39083913 39111493 FALSE 647 -0.439700824472697 39 38869641 39110047 NA 2 NA NA 2 NA 240406 NA 10 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACPP 3 132317367 132368298 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 11 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACR 22 50738196 50745334 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACRBP 12 6638075 6647460 FALSE 381 -0.0962006740122522 67 6638345 6823870 0.31995059840763 3 NA 0.31995059840763 3 NA 185525 NA 10 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACRV1 11 125671522 125681123 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSBG1 15 78167468 78245688 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 22 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSBG2 19 6135247 6193094 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSF2 17 50426158 50474845 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 23 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSF3 16 89088375 89164121 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSL1 4 184755595 184826818 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 21 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSL3 2 222860934 222944639 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSL4 23 109624244 109733403 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSL5 10 112374018 112428380 FALSE 336 0.281281646454176 97 110567687 113628982 0.39968910724052 4 NA 0.39968910724052 4 NA 3061295 NA 14 21 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSL6 5 131949973 132012243 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 23 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSM1 16 20623237 20698890 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSM2A 16 20451461 20487667 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 14 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSM2B 16 20536226 20576427 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSM3 16 20610243 20797581 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 34 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSM4 12 7304284 7328724 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSM5 16 20409534 20441336 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 15 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSM6 10 95194200 95228928 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 10 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSS1 20 25006230 25058980 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 18 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSS2 20 34872146 34927962 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACSS3 12 80936414 81261205 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTA1 1 229431245 229434098 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTA2 10 88935074 88991339 FALSE 331 0.160746647112512 87 88274961 89024998 0.206344716318008 6 3 0.206344716318008 6 3 750037 3 10 20 3 FALSE AMP (BALANCED) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTB 7 5527147 5563784 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTBL2 5 57480016 57482809 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTC1 15 34788095 34795726 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTG1 17 81509971 81523847 TRUE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 6 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTG2 2 73892314 73919865 FALSE 66 -0.131768028115121 67 73901291 73958187 0.31995059840763 3 NA 0.31995059840763 3 NA 56896 NA 2 8 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTL10 20 33666498 33668525 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTL6A 3 179562880 179588408 FALSE 128 0.146934569885818 86 179242975 181712000 0.360033220093454 4 NA 0.360033220093454 4 NA 2469025 NA 14 14 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTL6B 7 100643097 100656461 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTL7A 9 108862266 108863759 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTL7B 9 108854589 108856967 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTL8 1 17755313 17827063 FALSE 16 0.136831934058324 84 16759339 18631648 0.243587385410565 5 2 0.243587385410565 5 2 1872309 3 15 6 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTL9 19 8697397 8698822 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTN1 14 68874143 68979440 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 23 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTN2 1 236686454 236764631 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTN3 11 66546395 66563329 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTN4 19 38647649 38731583 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 26 1 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTR10 14 58200080 58235636 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 13 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTR1A 10 102461881 102502711 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 23 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTR1B 2 97655963 97664107 FALSE 76 -0.26669136290751 51 97549412 97702686 NA 2 NA NA 2 NA 153274 NA 4 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTR2 2 65227753 65271253 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTR3 2 113889960 113962596 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTR3B 7 152759749 152855378 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTR3C 7 150243916 150323725 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTR5 20 38748442 38772520 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 11 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTR6 12 100199122 100241865 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTR8 3 53867066 53882202 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTRT1 23 128050962 128052398 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTRT2 1 3021483 3022903 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACTRT3 3 169766921 169769895 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACVR1 2 157736444 157875862 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 23 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACVR1B 12 51951667 51997078 FALSE 406 0.935115292659676 114 51913120 52007182 0.397448435712946 9 NA 0.397448435712946 9 NA 94062 NA 3 28 1 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACVR1C 2 157526767 157629005 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACVR2A 2 147844517 147930826 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACVR2B 3 38453851 38493142 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACVRL1 12 51906908 51923361 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 11 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACY1 3 51983278 51989202 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACY3 11 67642555 67650659 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACYP1 14 75053221 75069483 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 3 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ACYP2 2 53970838 54305300 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 11 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AD000671.1 19 35745678 35754519 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AD000671.2 19 35739252 35745432 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 13 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADA 20 44619522 44652233 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADA2 22 17178790 17258235 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAD1 4 122378966 122429802 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAD2 16 84191138 84197168 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAL 15 43330657 43354555 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM10 15 58588807 58749978 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM11 17 44759031 44781846 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 23 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM12 10 126012381 126388455 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 25 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM15 1 155050566 155062775 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 26 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM17 2 9488486 9556732 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 20 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM18 8 39584489 39730064 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 21 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM19 5 157395534 157575775 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 35 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM2 8 39743735 39838289 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 20 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM20 14 70522358 70535015 FALSE 456 -0.528554564313879 34 70049041 70667652 0.312402751065481 1 0 0.312402751065481 1 0 618611 1 8 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM21 14 70452157 70459899 FALSE 456 -0.528554564313879 34 70049041 70667652 0.312402751065481 1 0 0.312402751065481 1 0 618611 1 8 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM22 7 87934143 88202889 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM23 2 206443539 206621130 FALSE 98 -0.534538327599125 34 206124310 206587285 0.312402751065481 1 0 0.312402751065481 1 0 462975 1 5 27 0 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM28 8 24294040 24359018 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM29 4 174829668 174978180 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM30 1 119893533 119896495 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM32 8 39106990 39284911 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 25 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM33 20 3667965 3682246 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 22 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM7 8 24440930 24526970 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM8 10 133262403 133276868 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 23 7 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAM9 8 38996869 39105144 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 22 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMDEC1 8 24384285 24406013 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS1 21 26835747 26845409 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS10 19 8580242 8610735 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 26 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS12 5 33523535 33892192 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 31 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS13 9 133414358 133459402 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 40 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS14 10 70672803 70762441 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 26 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS15 11 130448974 130476641 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS16 5 5140330 5320304 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 28 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS17 15 99971589 100342005 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 25 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS18 16 77247813 77435114 FALSE 530 0.0863261484312413 82 76522085 80684905 0.298111653356898 4 NA 0.298111653356898 4 NA 4162820 NA 12 26 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS19 5 129460265 129738683 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 27 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS2 5 179110851 179345430 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 25 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS20 12 43353866 43551921 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 41 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS3 4 72280969 72569386 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 25 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS4 1 161184308 161199056 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS5 21 26917912 26966513 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS6 5 65148736 65481920 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 25 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS7 15 78759203 78811431 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 32 9 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS8 11 130404925 130428993 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTS9 3 64515654 64688000 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 42 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTSL1 9 17906563 18910950 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 37 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTSL2 9 133532164 133575519 FALSE 305 0.210954204844519 94 133475068 133579261 0.39968910724052 4 NA 0.39968910724052 4 NA 104193 NA 4 20 4 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTSL3 15 83654086 84039842 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 36 5 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTSL4 1 150549369 150560937 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 25 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAMTSL5 19 1505018 1513604 FALSE 589 -0.44786516347233 39 1398963 1609436 NA 2 NA NA 2 NA 210473 NA 14 12 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAP1 7 897901 955407 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAP2 17 30906344 30959322 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAR 1 154582057 154628013 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADARB1 21 45073853 45226560 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADARB2 10 1177318 1737476 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 16 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAT1 16 75596981 75623300 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAT2 6 143422832 143450673 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADAT3 19 1905378 1913447 FALSE 591 -0.292096165521122 44 1753671 2129102 0.213873728132233 2 0 0.213873728132233 2 0 375431 2 13 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCK1 14 77800083 77935012 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 13 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCK2 7 140673153 140696261 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCK5 8 144373101 144393242 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCY1 7 45574140 45723116 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCY10 1 167809388 167914215 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 34 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCY2 5 7396208 7830081 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 26 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCY3 2 24819169 24919839 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 26 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCY4 14 24318349 24335093 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 26 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCY5 3 123282296 123449758 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 26 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCY6 12 48766194 48789037 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCY7 16 50246137 50318135 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCY8 8 130780301 131042426 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 23 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCY9 16 3953387 4116185 FALSE 514 0.622835549580881 107 3565001 3966951 0.397448435712946 7 NA 0.397448435712946 7 NA 401950 NA 6 22 0 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCYAP1 18 904943 912172 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADCYAP1R1 7 31052461 31111479 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 16 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADD1 4 2843857 2930076 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 18 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADD2 2 70607618 70768225 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADD3 10 109996368 110135565 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGB 6 146598965 146815462 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 37 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRA1 10 133070929 133131675 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRA2 8 37784191 37844896 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 39 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRA3 4 22345071 22516054 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRB1 8 142449430 142545009 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 36 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRB2 1 31727117 31764893 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 38 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRB3 6 68635367 69389511 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 35 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRD1 12 130953907 131141469 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 27 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRE1 19 6887566 6940459 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 21 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRE2 19 14732393 14778541 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 20 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRE3 19 14619117 14690027 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 16 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRE5 19 14380501 14408725 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 20 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRF1 6 46997703 47042363 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRF2 6 47656436 47697797 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRF3 2 26308173 26346817 FALSE 56 0.00177645496183448 77 25244133 26472685 0.252310779181821 4 NA 0.252310779181821 4 NA 1228552 NA 12 22 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRF4 6 47685864 47722021 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRF5 6 46852512 46954943 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 26 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRG1 16 57610652 57665580 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 17 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRG2 23 18989309 19122637 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 30 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRG3 16 57668187 57689378 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 14 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRG4 23 136300963 136416888 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 50 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRG5 16 57542421 57591681 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRG6 6 142301854 142446266 FALSE 220 0.0543375783167098 82 138298662 142443515 0.298111653356898 4 NA 0.298111653356898 4 NA 4144853 NA 16 32 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRG7 3 100609589 100695479 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRL1 19 14147743 14206187 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 32 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRL2 1 81306160 81992436 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 32 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRL3 4 61201258 62078335 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 33 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRL4 1 78889764 79006718 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADGRV1 5 90529344 91164437 FALSE 172 -0.27798107857045 51 90525268 90853547 NA 2 NA NA 2 NA 328279 NA 2 125 12 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADH1A 4 99276367 99291028 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADH1B 4 99304964 99352760 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 18 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADH1C 4 99336492 99353027 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 9 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADH4 4 99123657 99157792 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 11 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADH5 4 99070978 99088801 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADH6 4 99202638 99219537 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADH7 4 99412261 99435737 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADHFE1 8 66432486 66468907 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADI1 2 3497361 3519736 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADIG 20 38581195 38588463 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADIPOQ 3 186842690 186858463 FALSE 136 0.193577617007497 90 186677783 187370824 0.275334878251284 5 NA 0.275334878251284 5 NA 693041 NA 10 5 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADIPOR1 1 202940823 202958572 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADIPOR2 12 1688574 1788678 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADIRF 10 86968192 86983934 FALSE 329 -0.116680330790243 67 86927969 87862413 0.31995059840763 3 NA 0.31995059840763 3 NA 934444 NA 13 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADK 10 74151185 74709303 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADM 11 10304680 10307397 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADM2 22 50481556 50486440 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADM5 19 49688664 49690575 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADNP 20 50888916 50931421 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADNP2 18 80109031 80147523 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 15 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADO 10 62804857 62808483 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADORA1 1 203090654 203167405 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADORA2A 22 24417879 24442360 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADORA2B 17 15944917 15975746 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADORA3 1 111499429 111503760 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADPGK 15 72751369 72785846 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADPRH 3 119579268 119589945 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADPRHL1 13 113399610 113453524 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 26 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADPRHL2 1 36088875 36093932 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADPRM 17 10697594 10711233 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADRA1A 8 26748150 26867273 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADRA1B 5 159865080 159972544 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADRA1D 20 4220631 4249074 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADRA2A 10 111077163 111080907 FALSE 336 0.281281646454176 97 110567687 113628982 0.39968910724052 4 NA 0.39968910724052 4 NA 3061295 NA 14 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADRA2B 2 96112875 96116245 FALSE 72 -0.297431743288301 44 95106429 96195026 0.213873728132233 2 0 0.213873728132233 2 0 1088597 2 15 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADRA2C 4 3766348 3768526 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADRB1 10 114044056 114046908 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADRB2 5 148825245 148828687 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADRB3 8 37962991 37966965 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADRM1 20 62302093 62308862 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADSL 22 40346500 40390463 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADSS 1 244408494 244452134 FALSE 44 0.117466813329847 86 243659450 245702541 0.360033220093454 4 NA 0.360033220093454 4 NA 2043091 NA 11 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADSSL1 14 104724186 104747325 FALSE 470 -0.28238273283378 51 103746376 104759488 NA 2 NA NA 2 NA 1013112 NA 11 16 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ADTRP 6 11712054 11807046 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AEBP1 7 44104361 44114562 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 24 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AEBP2 12 19404045 19720801 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AEN 15 88621296 88632282 FALSE 498 -0.51213719589399 35 88530880 88857136 0.252021069663427 1 0 0.252021069663427 1 0 326256 1 5 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AES 19 3052910 3063107 FALSE 595 -0.450163878767581 39 2732975 3094339 NA 2 NA NA 2 NA 361364 NA 12 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AF241726.2 23 37349330 38687674 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 106 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AFAP1 4 7758714 7939926 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 21 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AFAP1L1 5 149271871 149341802 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AFAP1L2 10 114294824 114404756 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AFDN 6 167826922 167972023 FALSE 229 0.162833614043837 88 167136718 168061946 0.3914153250654 4 2 0.3914153250654 4 2 925228 2 9 40 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AFF1 4 86935002 87141054 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 27 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AFF2 23 148500619 149000663 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 30 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AFF3 2 99545419 100142739 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 29 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AFF4 5 132875379 132963634 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 25 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AFG1L 6 108294894 108526796 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 14 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AFG3L2 18 12328944 12377314 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AFM 4 73481683 73504001 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AFMID 17 78187317 78207701 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AFP 4 73431138 73456174 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 17 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AFTPH 2 64524305 64593005 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGA 4 177430770 177442503 FALSE 157 0.0251014068813815 77 176192989 182751835 0.252310779181821 4 NA 0.252310779181821 4 NA 6558846 NA 7 9 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGAP1 2 235494089 236131800 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 21 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGAP2 12 57723761 57742157 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGAP3 7 151085831 151144436 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 25 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGAP4 10 45825594 45853875 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 11 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGAP5 10 73674285 73698159 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 12 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGAP6 10 49982190 50010499 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 14 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGAP9 10 47501854 47523638 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGBL1 15 86079973 87029052 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 28 2 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGBL2 11 47659591 47715389 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 21 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGBL3 7 134986508 135147963 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 20 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGBL4 1 48532855 50023913 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 23 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGBL5 2 27042364 27070622 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGER 6 32180968 32184324 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 11 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGFG1 2 227472152 227561214 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGFG2 7 100539211 100568219 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGGF1 5 77029251 77065234 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGK 7 141551189 141655244 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGL 1 99850084 99924023 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 36 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGMAT 1 15572353 15585110 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGMO 7 15200318 15562015 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 13 0 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGO1 1 35869808 35930528 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGO2 8 140520156 140635619 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGO3 1 35930718 36072500 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGO4 1 35808172 35857890 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGPAT1 6 32168212 32178096 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGPAT2 9 136673143 136687423 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGPAT3 21 43865186 43986536 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGPAT4 6 161129979 161274061 FALSE 227 0.619362333398079 107 160991922 163578580 0.397448435712946 7 NA 0.397448435712946 7 NA 2586658 NA 5 8 1 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGPAT5 8 6708357 6759666 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 10 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGPS 2 177392644 177559299 FALSE 88 0.660617078694223 108 177216962 177392831 0.397448435712946 7 NA 0.397448435712946 7 NA 175869 NA 3 29 0 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGR2 7 16791811 16833433 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 7 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGR3 7 16859405 16881987 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 7 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGRN 1 1020123 1056118 FALSE 1 -0.106716554101356 67 69453 1051961 0.31995059840763 3 NA 0.31995059840763 3 NA 982508 NA 11 47 1 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGRP 16 67482571 67483813 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGT 1 230702523 230714297 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGTPBP1 9 85546539 85742029 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 29 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGTR1 3 148697784 148743008 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGTR2 23 116170722 116174972 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGTRAP 1 11736084 11754802 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGXT 2 240868479 240880502 FALSE 109 -0.204551948627658 52 240042747 240874079 0.261858812358373 3 1 0.261858812358373 3 1 831332 2 13 12 3 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AGXT2 5 34998101 35048135 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 14 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AHCTF1 1 246839098 246931967 FALSE 45 -0.259945689995748 51 245749557 247491500 NA 2 NA NA 2 NA 1741943 NA 13 45 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AHCY 20 34280268 34311802 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AHCYL1 1 109984686 110023741 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AHCYL2 7 129225023 129430211 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 20 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AHDC1 1 27534035 27604431 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AHI1 6 135283532 135497776 FALSE 218 -0.114845236609927 67 135285636 137194883 0.31995059840763 3 NA 0.31995059840763 3 NA 1909247 NA 10 30 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AHNAK 11 62433542 62556235 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 72 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AHNAK2 14 104937244 104978357 FALSE 473 -0.596284854283221 31 104894354 104991443 0.39968910724052 1 0 0.39968910724052 1 0 97089 1 4 70 15 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AHR 7 16916359 17346152 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 15 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AHRR 5 304176 438291 FALSE 160 0.207920496709617 94 224566 833800 0.39968910724052 4 NA 0.39968910724052 4 NA 609234 NA 9 19 5 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AHSA1 14 77457870 77469474 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 9 4 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AHSG 3 186612923 186621318 FALSE 135 0.383017234579865 101 186047790 186677676 0.397448435712946 5 NA 0.397448435712946 5 NA 629886 NA 9 8 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AHSP 16 31527864 31528803 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AICDA 12 8602166 8612871 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AIDA 1 222668013 222713210 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AIF1 6 31615184 31617021 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AIF1L 9 131096476 131123152 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AIFM1 23 130129362 130165887 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 18 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AIFM2 10 70098223 70132934 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AIFM3 22 20965108 20981360 FALSE 697 0.537845744331176 105 20887766 20998561 0.397448435712946 6 NA 0.397448435712946 6 NA 110795 NA 4 20 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AIG1 6 143060496 143340304 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 8 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AIM2 1 159062484 159147096 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AIMP1 4 106315544 106349226 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AIMP2 7 6009245 6023834 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AIP 11 67483041 67491103 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AIPL1 17 6393693 6435199 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AIRE 21 44285838 44298648 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 14 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AJAP1 1 4654732 4792534 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AJM1 9 136844415 136848801 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AJUBA 14 22971174 22982642 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AK1 9 127866480 127877743 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AK2 1 33007940 33080996 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AK3 9 4709559 4742043 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AK4 1 65147549 65232145 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AK5 1 77282051 77559969 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AK6 5 69350984 69370013 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AK7 14 96392111 96489427 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AK8 9 132725578 132878777 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AK9 6 109492856 109691217 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 46 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAIN1 18 5145285 5197503 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP1 17 57085092 57121349 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 16 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP10 17 19904302 19978343 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP11 13 42272153 42323267 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 29 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP12 6 151239999 151358557 FALSE 223 0.236892508535766 96 150395481 152208217 0.39968910724052 4 1 0.39968910724052 4 1 1812736 3 10 23 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP13 15 85380571 85749358 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 54 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP14 23 119895837 119920716 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP2 9 110048598 110172512 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 14 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP3 12 4615508 4649047 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP4 23 50190768 50201013 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 14 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP5 14 64465499 64474503 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 5 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP6 14 32329273 32837681 FALSE 449 -0.090252011740912 67 31387284 34807549 0.31995059840763 3 NA 0.31995059840763 3 NA 3420265 NA 14 34 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP7 6 131135666 131283535 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP8 19 15353385 15379798 FALSE 626 0.131420245867563 86 15354999 15728497 0.360033220093454 4 NA 0.360033220093454 4 NA 373498 NA 10 19 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP8L 19 15380048 15419141 FALSE 626 0.131420245867563 86 15354999 15728497 0.360033220093454 4 NA 0.360033220093454 4 NA 373498 NA 10 14 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKAP9 7 91940867 92110673 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 75 10 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKIP1 11 8911139 8920084 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKIRIN1 1 38991223 39006059 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKIRIN2 6 87675072 87702209 FALSE 201 -0.221189436484543 57 87265553 88929289 0.158317833115363 3 NA 0.158317833115363 3 NA 1663736 NA 12 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKNA 9 114334156 114394405 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 28 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKNAD1 1 108815898 108858228 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKR1A1 1 45550543 45570049 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKR1B1 7 134442350 134459284 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKR1B10 7 134527592 134541408 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKR1B15 7 134549136 134579875 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKR1C1 10 4963253 4983283 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 9 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKR1C2 10 4987400 5018031 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKR1C3 10 5035354 5107686 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 10 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKR1C4 10 5195462 5218949 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKR1C8P 10 5154140 5185187 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKR1D1 7 138002324 138117986 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKR1E2 10 4786629 4848062 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKR7A2 1 19303965 19312146 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKR7A3 1 19282558 19289250 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 8 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKT1 14 104769349 104795751 FALSE 471 0.787803514486211 112 104769452 104801597 0.397448435712946 8 NA 0.397448435712946 8 NA 32145 NA 2 32 4 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKT1S1 19 49869033 49878459 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKT2 19 40230317 40285536 FALSE 650 0.928247489954192 114 40230456 40285283 0.397448435712946 9 NA 0.397448435712946 9 NA 54827 NA 1 34 4 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKT3 1 243488233 243851079 FALSE 43 0.93431872679775 114 243344262 243658046 0.397448435712946 9 NA 0.397448435712946 9 NA 313784 NA 2 45 6 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AKTIP 16 53491040 53504411 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL020996.2 1 25811470 25823744 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 8 2 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL021546.1 12 120438198 120460006 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL021997.3 6 28267121 28281580 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL022238.4 22 40346529 40410054 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 34 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL022318.4 22 39014363 39033276 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL024498.2 6 10747794 10930423 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 47 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL031281.2 1 22025511 22101360 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL031315.1 6 169419969 169702047 FALSE 230 -0.0331467567986683 71 168062029 170285618 0.212208033369562 4 0 0.212208033369562 4 0 2223589 4 11 25 3 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL031708.1 16 1632259 1686715 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 25 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL031777.3 6 26195595 26199293 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL031847.2 1 6159430 6197757 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL033529.1 1 32465057 32600792 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL034430.1 20 10413520 10431922 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 1 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL035078.4 11 31812391 32104665 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL035425.2 23 108722070 108732687 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL035460.1 20 2814968 2818066 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL049557.1 1 111722064 111755824 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL049629.2 11 33698261 33722467 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL049634.2 20 1540144 1620009 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 15 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL049650.1 20 2467212 2508907 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL049697.1 6 87408012 87511634 FALSE 201 -0.221189436484543 57 87265553 88929289 0.158317833115363 3 NA 0.158317833115363 3 NA 1663736 NA 12 21 4 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL049779.1 14 67659820 67690367 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL049839.2 14 94592058 94624646 FALSE 463 -0.464555355125233 39 94463259 95086236 NA 2 NA NA 2 NA 622977 NA 8 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL049844.1 6 143807092 143844617 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL049844.3 6 143857318 143938471 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 14 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL080251.1 1 18849273 18921121 FALSE 17 -1.08917150076189 19 18634420 18857583 0.39968910724052 0 0 0.39968910724052 0 0 223163 0 3 32 6 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL096711.2 6 127438406 127519001 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 26 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL096870.1 14 24332310 24337382 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL109811.4 1 11012662 11030528 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 11 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL109827.1 20 35632340 35674544 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL110118.2 14 93184973 93218586 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL117339.5 10 38094368 38360098 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL117348.2 1 225886696 225924278 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL121594.1 14 35122549 35317474 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 18 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL121722.1 20 22560553 22584261 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL121753.1 20 35267885 35280043 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL121758.1 20 646626 675800 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL121845.2 20 63738270 63740398 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL121845.3 20 63708864 63739103 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL121900.2 20 18567453 18744216 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL132671.2 6 117318211 117573571 FALSE 211 0.437218059892028 102 116922097 117331289 0.397448435712946 5 2 0.397448435712946 5 2 409192 3 4 150 41 TRUE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL132780.3 14 22946270 22982258 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 21 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL133352.1 10 100505628 100529881 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL133353.2 10 99651595 99732112 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL133410.3 9 35812960 35828732 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL133500.1 23 72301691 72572843 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 17 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL135905.2 6 63572012 63583587 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL136295.1 14 24189157 24213473 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 21 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL136295.3 14 24120956 24131829 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL136295.4 14 24180395 24190416 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 29 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL136295.5 14 24151218 24167402 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 23 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL136373.1 1 46532166 46543969 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL136531.2 20 1317571 1393096 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL138752.2 9 37588413 38068687 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 67 5 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL139011.2 1 160216800 160285130 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL139142.2 1 173596060 173669837 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL139300.1 14 103562962 103685924 FALSE 467 -0.166720648541046 62 102922761 103677490 0.235629703240478 3 NA 0.235629703240478 3 NA 754729 NA 13 22 0 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL139353.1 14 31334312 31457441 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 25 1 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL157392.5 10 13610047 13655929 FALSE 315 0.228244116357697 94 12828838 14820149 0.39968910724052 4 NA 0.39968910724052 4 NA 1991311 NA 13 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL157935.2 9 127867850 127906022 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL159163.1 6 166858094 166956124 FALSE 228 -0.0936034159017556 66 165280135 167136462 0.330876988437597 3 0 0.330876988437597 3 0 1856327 3 12 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL160269.1 9 96235331 96352058 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL160272.2 9 117704157 117877478 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL162231.1 9 34664163 34666112 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL162231.3 9 34646645 34657113 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 14 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL162377.3 13 51763951 51845159 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 17 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL162417.1 9 133098121 133163914 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 31 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL163195.3 14 20582892 20609795 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL163636.2 14 20684587 20700576 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL353588.1 6 44273194 44378957 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 47 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL355102.2 14 96204844 96263929 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL355312.5 6 149817937 149896011 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 17 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL355315.1 10 97584374 97673910 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 25 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL355916.2 14 61529128 61657964 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 4 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL355987.1 9 136738167 136748453 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL355987.3 9 136791379 136800595 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL357673.1 1 54132686 54200073 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL358075.4 1 46043661 46176488 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 25 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL358113.1 9 69035750 69255187 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 34 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL358472.6 1 153975850 153986246 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL358472.7 1 153959151 153975887 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL359736.1 13 23979700 24321031 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 28 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL359922.1 9 21802636 22032986 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 97 6 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL360181.3 10 133390834 133420495 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL365205.1 6 41780349 41790141 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 10 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL365214.3 6 112236806 112350094 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL365232.1 6 73209746 73263196 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL365273.2 10 95860548 95924844 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL391650.1 1 26169516 26171831 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL445685.3 1 52020153 52033350 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL449266.1 1 108837660 108963484 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 36 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL451062.3 1 43650149 43931014 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 37 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL512428.1 6 24797373 24809798 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL512506.3 13 43883800 44028526 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL512785.2 1 162365407 162383531 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL513165.2 9 37512547 37592469 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 20 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL583836.1 10 94688154 94853073 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL589666.1 6 85557978 85615234 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL590132.1 1 210858125 211134146 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL590764.2 23 71103987 71111575 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 13 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL591806.3 1 160997957 161038962 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 14 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL592490.1 13 61409858 61427849 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 12 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL603832.3 1 112702614 112711433 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL645922.1 6 31927698 31952048 FALSE 192 0.00493836391948355 77 31761776 31933922 0.252310779181821 4 NA 0.252310779181821 4 NA 172146 NA 16 37 1 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL645941.2 6 32937364 32953122 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL662820.1 6 33321386 33329286 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL662884.4 6 32150495 32154373 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL662899.1 6 31686962 31714072 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 30 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL662899.2 6 31666102 31673546 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 10 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL669918.1 6 32813767 32838822 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 19 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL672043.1 1 46175486 46176478 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL672142.1 9 128941478 128957021 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL691442.1 1 155063748 155086807 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL713999.1 1 155169409 155187272 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL807752.6 9 137031241 137040436 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL807752.7 9 136977518 136985435 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL928654.3 14 105487199 105492267 FALSE 474 -0.136925231270881 62 104993000 105529597 0.235629703240478 3 NA 0.235629703240478 3 NA 536597 NA 15 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AL929554.1 9 137168854 137171984 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 8 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALAD 9 113386317 113401333 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 10 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALAS1 3 52198086 52214327 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALAS2 23 55009055 55031064 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 13 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALB 4 73397114 73421412 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALCAM 3 105366909 105576900 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH16A1 19 49453169 49471048 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH18A1 10 95605929 95656706 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH1A1 9 72900662 73080442 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH1A2 15 57953424 58497866 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 22 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH1A3 15 100877714 100916626 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH1B1 9 38392664 38398661 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH1L1 3 126103562 126197994 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 25 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH1L2 12 105019784 105084577 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 24 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH2 12 111766887 111817529 FALSE 421 -0.0176554379426518 77 111455010 112163629 0.252310779181821 4 NA 0.252310779181821 4 NA 708619 NA 11 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH3A1 17 19737984 19748943 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH3A2 17 19648136 19677598 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH3B1 11 68008578 68029282 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH3B2 11 67662162 67681200 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH4A1 1 18871430 18902781 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 15 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH5A1 6 24494852 24537207 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH6A1 14 74056850 74084493 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 16 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH7A1 5 126531200 126595418 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH8A1 6 134917390 134950122 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDH9A1 1 165662216 165698863 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 11 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDOA 16 30064164 30070457 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDOB 9 101420578 101449664 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALDOC 17 28573115 28577264 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG1 16 5033923 5087379 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG10 12 34022281 34029694 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG10B 12 38316578 38329728 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG11 13 52012398 52032171 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 17 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG12 22 49900229 49918458 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG13 23 111665811 111760649 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 30 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG14 1 94974407 95072945 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG1L 3 125929275 125937039 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG1L2 3 130081831 130113227 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 8 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG2 9 99216426 99221956 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG3 3 184242301 184249548 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG5 13 36949775 37000261 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG6 1 63367575 63438562 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG8 11 78100936 78139660 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALG9 11 111782195 111871581 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALK 2 29192774 29921566 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 85 8 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALKAL1 8 52534037 52565507 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALKAL2 2 279558 288851 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALKBH1 14 77672404 77708020 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALKBH2 12 109088188 109093631 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALKBH3 11 43880811 43920266 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALKBH4 7 102456238 102464876 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALKBH5 17 18183078 18209954 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALKBH6 19 36009120 36014239 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALKBH7 19 6372433 6375251 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALKBH8 11 107502726 107565746 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALLC 2 3658195 3702671 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALMS1 2 73385758 73610793 FALSE 65 -0.681372041727781 29 73385994 73862307 0.39968910724052 1 0 0.39968910724052 1 0 476313 1 6 62 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALOX12 17 6996065 7010736 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALOX12B 17 8072636 8087716 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 21 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALOX15 17 4630902 4642294 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 16 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALOX15B 17 8039017 8049134 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 15 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALOX5 10 45374176 45446119 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 15 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALOX5AP 13 30713478 30764426 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 6 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALOXE3 17 8095900 8119047 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 20 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALPG 2 232406843 232410714 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALPI 2 232456123 232460032 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALPK1 4 112285509 112442620 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 22 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALPK2 18 58481247 58628957 FALSE 581 -0.845030044952168 23 58349528 58670714 0.307934776518021 0 0 0.307934776518021 0 0 321186 0 2 33 5 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALPK3 15 84816680 84873482 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 30 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALPL 1 21509372 21578412 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALPP 2 232378534 232382889 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 12 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALS2 2 201700554 201781189 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 38 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALS2CL 3 46668997 46693704 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 26 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALS2CR12 2 201288271 201357398 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALX1 12 85280107 85301784 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALX3 1 110059994 110070700 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALX4 11 44260440 44310166 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ALYREF 17 81887844 81891586 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMACR 5 33986178 34008108 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 8 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMBN 4 70592256 70607288 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 14 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMBP 9 114060127 114078472 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMBRA1 11 46396414 46594125 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMD1 6 110874770 110895713 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMDHD1 12 95943293 95968716 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 9 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMDHD2 16 2520357 2531422 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMELX 23 11293413 11300761 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMER1 23 64185117 64205744 TRUE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 22 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMER2 13 25161684 25172288 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMER3 2 130755435 130768134 FALSE 84 -0.292186070013859 45 130656603 132790182 1 2 1 1 2 1 2133579 1 16 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMFR 16 56361452 56425538 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMH 19 2249309 2252073 FALSE 593 -0.414090744354779 39 2233974 2403179 NA 2 NA NA 2 NA 169205 NA 11 10 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMHR2 12 53423855 53431534 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMIGO1 1 109504175 109509738 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMIGO2 12 47075707 47079951 FALSE 400 0.134361824814035 86 46793047 47718156 0.360033220093454 4 NA 0.360033220093454 4 NA 925109 NA 5 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMIGO3 3 49716834 49719695 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMMECR1 23 110194186 110440233 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMMECR1L 2 127861630 127885922 FALSE 82 -0.261392512927958 50 127719285 130373216 1 2 1 1 2 1 2653931 1 15 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMN 14 102922656 102933596 FALSE 467 -0.166720648541046 62 102922761 103677490 0.235629703240478 3 NA 0.235629703240478 3 NA 754729 NA 13 12 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMN1 12 31671137 31729174 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMOT 23 112774503 112840815 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 18 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMOTL1 11 94706431 94876753 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 19 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMOTL2 3 134355874 134375479 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 18 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMPD1 1 114673090 114695618 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 17 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMPD2 1 109616104 109632051 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMPD3 11 10308313 10507579 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMPH 7 38383704 38631567 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 23 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMT 3 49416775 49422753 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMTN 4 70518540 70532742 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 9 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMY1A 1 103655290 103664554 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMY1C 1 103750406 103758690 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMY2A 1 103616811 103625780 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMY2B 1 103553815 103579534 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMZ1 7 2679522 2775500 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AMZ2 17 68247574 68257164 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANAPC1 2 111611639 111884690 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 42 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANAPC10 4 144831908 145098541 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANAPC11 17 81890790 81900991 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANAPC13 3 134477706 134486716 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 3 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANAPC15 11 72106378 72112780 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANAPC16 10 72216000 72235860 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANAPC2 9 137174784 137188549 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 17 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANAPC4 4 25377213 25418498 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 27 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANAPC5 12 121308245 121399896 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANAPC7 12 110372900 110403730 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 11 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANG 14 20684177 20698971 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANGEL1 14 76786178 76826246 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 13 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANGEL2 1 212992182 213015826 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANGPT1 8 107249482 107498055 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANGPT2 8 6499651 6563409 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 12 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANGPT4 20 869899 916317 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANGPTL1 1 178849705 178871052 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANGPTL2 9 127087332 127122883 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANGPTL3 1 62597487 62606159 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANGPTL4 19 8363289 8374373 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 8 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANGPTL5 11 101890674 101916522 FALSE 363 -0.209376653333357 57 101455078 102081180 0.158317833115363 3 NA 0.158317833115363 3 NA 626102 NA 4 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANGPTL6 19 10092338 10102796 FALSE 612 -0.2463765322708 51 9849131 10133617 NA 2 NA NA 2 NA 284486 NA 11 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANGPTL7 1 11189341 11195981 FALSE 10 -0.472587818930969 39 11046896 11690703 NA 2 NA NA 2 NA 643807 NA 11 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANGPTL8 19 11237450 11241943 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANHX 12 133218312 133236095 FALSE 428 -0.308400004626836 46 132869854 133234366 NA 2 NA NA 2 NA 364512 NA 10 9 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANK1 8 41653220 41896762 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 51 7 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANK2 4 112818109 113383740 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 82 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANK3 10 60026298 60733490 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 82 3 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKAR 2 189674290 189761193 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 33 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKDD1A 15 64911902 64958700 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKDD1B 5 75611459 75671846 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKEF1 20 9986126 10058303 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 13 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKFN1 17 55882301 56511659 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKFY1 17 4163907 4263995 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 26 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKH 5 14704800 14871785 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKHD1 5 140401814 140539856 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 48 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKHD1-EIF4EBP3 5 140401908 140549569 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 52 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKIB1 7 92246234 92401384 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKK1 11 113387791 113400418 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKLE1 19 17281645 17287646 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 13 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKLE2 12 132725503 132761888 FALSE 427 0.237104219097234 97 132687678 132861490 0.39968910724052 4 NA 0.39968910724052 4 NA 173812 NA 5 16 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKMY1 2 240479422 240569209 FALSE 109 -0.204551948627658 52 240042747 240874079 0.261858812358373 3 1 0.261858812358373 3 1 831332 2 13 25 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKMY2 7 16599776 16645817 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 11 2 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRA2 5 73552335 73565686 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD1 10 90912096 90921276 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD10 13 110878540 110915069 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD11 16 89267619 89490561 TRUE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 77 3 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD12 18 9136228 9285985 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 30 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD13A 12 109999186 110039763 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD13B 17 29589769 29614761 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD13C 1 70260588 70354734 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD13D 11 67288547 67302485 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD16 10 5861617 5889906 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD17 4 73073376 73258798 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 46 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD18A 9 38571358 38620660 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 21 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD18B 9 33524394 33573009 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 22 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD2 10 97572499 97583884 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD20A1 9 67859147 67902094 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 10 4 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD20A2 9 40223285 40266392 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 3 1 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD20A3 9 66106815 66153135 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 4 1 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD20A4 9 64369394 64413142 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 13 4 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD22 10 88822132 88851818 FALSE 331 0.160746647112512 87 88274961 89024998 0.206344716318008 6 3 0.206344716318008 6 3 750037 3 10 6 0 FALSE AMP (BALANCED) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD23 2 96824526 96857934 FALSE 74 -0.129279957310398 64 96646499 97245420 0.313405470508204 3 1 0.313405470508204 3 1 598921 2 10 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD24 19 4183354 4224814 FALSE 600 -0.234869927794019 51 4175145 4306008 NA 2 NA NA 2 NA 130863 NA 7 27 4 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD26 10 26991914 27100498 FALSE 317 0.703049949529262 111 27004461 27100366 0.397448435712946 7 NA 0.397448435712946 7 NA 95905 NA 1 47 3 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD27 19 32597007 32676597 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD28 3 15667236 15859771 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 32 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD29 18 23598926 23662885 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD30A 10 37125788 37384111 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 36 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD30B 18 14728272 14852738 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 41 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD30BL 2 132147591 132257969 FALSE 84 -0.292186070013859 45 130656603 132790182 1 2 1 1 2 1 2133579 1 16 7 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD31 5 75068275 75236878 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 38 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD33 12 51887960 51891664 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 9 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD33B 5 10564330 10657816 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD34A 1 145959442 145964582 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD34B 5 80556755 80570488 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 7 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD34C 15 79293285 79298235 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD35 1 145866560 145885866 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 20 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD36 2 97113496 97250199 FALSE 74 -0.129279957310398 64 96646499 97245420 0.313405470508204 3 1 0.313405470508204 3 1 598921 2 10 70 14 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD36B 2 97492663 97589965 FALSE 75 -3.85904602192717 1 97245670 97547765 0.397448435712946 0 0 0.397448435712946 0 0 302095 0 2 26 0 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD36C 2 95836919 95991831 FALSE 72 -0.297431743288301 44 95106429 96195026 0.213873728132233 2 0 0.213873728132233 2 0 1088597 2 15 77 19 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD37 4 185396021 185400628 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD39 2 96836611 96858095 FALSE 74 -0.129279957310398 64 96646499 97245420 0.313405470508204 3 1 0.313405470508204 3 1 598921 2 10 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD40 17 50693190 50707924 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD40CL 17 50761029 50767557 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD42 11 83193739 83260694 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD44 2 196967017 197311173 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 29 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD45 1 173609561 173669862 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD46 8 100509752 100559784 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD49 11 94493629 94499583 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD50 4 124664052 124712732 FALSE 155 -0.704237669359932 29 122979275 125487575 0.39968910724052 1 0 0.39968910724052 1 0 2508300 1 4 18 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD52 12 56237807 56258391 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD53 2 70978380 70985499 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD54 22 37830855 37849327 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD55 5 56099678 56233359 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD6 6 89433170 89633834 FALSE 202 -0.0287117028264841 72 88941203 89712641 0.211382613745547 4 NA 0.211382613745547 4 NA 771438 NA 11 18 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD60 20 58218495 58228653 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD61 7 6031376 6036386 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD62 18 12093853 12129749 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD63 15 40281444 40282586 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD65 1 1418420 1421769 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD66 6 46746917 46759506 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD7 7 118214669 118496171 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKRD9 14 102501760 102509799 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKS1A 6 34889265 35091413 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 28 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKS1B 12 98726457 99984654 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 38 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKS3 16 4696510 4734378 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 18 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKS4B 16 21233665 21253845 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKS6 9 98731329 98796965 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 21 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKUB1 3 149761100 149968385 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 21 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANKZF1 2 219229757 219236669 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 15 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANLN 7 36389806 36453791 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 27 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANO1 11 70078302 70189528 FALSE 356 0.582187674739794 105 69641403 70149798 0.397448435712946 6 NA 0.397448435712946 6 NA 508395 NA 6 30 0 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANO10 3 43354859 43691594 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 17 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANO2 12 5531869 5946232 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 31 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANO3 11 26309599 26663288 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 34 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANO4 12 100717526 101128641 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 26 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANO5 11 21799934 22283357 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANO6 12 45215987 45440404 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 26 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANO7 2 241188509 241225377 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 25 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANO8 19 17323223 17334829 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 22 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANO9 11 417933 442011 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 21 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANOS1 23 8528874 8732186 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 15 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANP32A 15 68778535 68820897 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANP32B 9 97983361 98015943 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 7 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANP32D 12 48472665 48473624 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANP32E 1 150218417 150236156 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANPEP 15 89784889 89815401 FALSE 500 -0.691279523244779 29 89703105 89804613 0.39968910724052 1 0 0.39968910724052 1 0 101508 1 4 22 3 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANTXR1 2 69013178 69249327 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANTXR2 4 79901149 80125454 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANTXRL 10 46286345 46330207 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 19 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANXA1 9 73151757 73170393 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 12 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANXA10 4 168092515 168187690 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANXA11 10 80150889 80205572 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANXA13 8 123680794 123737407 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 12 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANXA2 15 60347134 60402883 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 13 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANXA2R 5 43039081 43043170 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANXA3 4 78551519 78610451 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANXA4 2 69644425 69827100 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANXA5 4 121667955 121697113 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANXA6 5 151100712 151157882 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANXA7 10 73375101 73414076 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANXA8L1 10 46375627 46391784 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ANXA9 1 150982017 150995634 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AOAH 7 36512949 36724549 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 23 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AOC1 7 150824627 150861504 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 12 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AOC2 17 42844600 42850707 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AOC3 17 42851184 42858130 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AOX1 2 200585868 200677064 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 35 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP000275.2 21 32578822 32612281 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP000295.1 21 33229901 33297160 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP000311.1 21 33584687 33931607 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 64 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP000350.4 22 23862188 23895223 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP000646.1 11 121024125 121113108 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 14 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP000721.1 11 63974620 63988346 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP000781.2 11 57387365 57424059 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 17 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP000812.4 11 72105924 72109329 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP000812.5 11 72080777 72110782 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP000944.2 11 65261928 65326543 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP001267.5 11 118401602 118482737 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 50 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP001273.2 11 93741664 93812378 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 22 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP001458.2 11 62649694 62665178 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP001781.2 11 111786286 111879425 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP001931.1 11 57742163 57793243 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP002373.1 11 114400682 114443932 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP002495.1 11 71865509 71928654 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP002512.3 11 56459221 56473352 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 8 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP002748.4 11 66509079 66533613 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP002884.3 11 112086903 112193805 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 29 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP002990.1 11 62559603 62591531 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP003108.2 11 61429220 61485822 FALSE 351 -0.00270858795298945 77 61249834 61434618 0.252310779181821 4 NA 0.252310779181821 4 NA 184784 NA 10 23 3 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP003419.1 11 67351572 67373584 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP1AR 4 112231737 112270047 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP1B1 22 29327680 29423179 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 25 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP1G1 16 71729000 71809201 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 23 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP1G2 14 23559565 23568070 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 20 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP1M1 19 16197578 16245907 FALSE 627 -0.490607499224798 35 15728649 16234395 0.252021069663427 1 0 0.252021069663427 1 0 505746 1 13 12 0 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP1M2 19 10572671 10587315 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP1S1 7 101154400 101161596 FALSE 243 -0.216974721306157 57 101087510 101616208 0.158317833115363 3 NA 0.158317833115363 3 NA 528698 NA 13 5 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP1S2 23 15825806 15854931 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP1S3 2 223751686 223838027 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP2A1 19 49766968 49807113 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP2A2 11 924894 1012245 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 25 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP2B1 17 35578046 35726409 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 21 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP2M1 3 184174689 184184091 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP2S1 19 46838136 46850992 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 6 1 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP3B1 5 78000525 78294755 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 27 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP3B2 15 82659281 82709914 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 30 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP3D1 19 2100988 2164468 FALSE 591 -0.292096165521122 44 1753671 2129102 0.213873728132233 2 0 0.213873728132233 2 0 375431 2 13 37 0 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP3M1 10 74120255 74151063 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP3M2 8 42152946 42171673 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP3S1 5 115841481 115914081 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP3S2 15 89830599 89894638 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP4B1 1 113894748 113905201 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP4E1 15 50908672 51005900 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 25 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP4M1 7 100101549 100110345 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 20 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP4S1 14 31025106 31096450 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP5B1 11 65775893 65780802 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP5M1 14 57268909 57298742 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 10 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP5S1 20 3820524 3828837 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AP5Z1 7 4775615 4794395 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APAF1 12 98645141 98735433 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 28 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APBA1 9 69427530 69672306 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 19 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APBA2 15 28884483 29118315 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 19 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APBA3 19 3750819 3761699 FALSE 598 -0.201030278929954 57 3651966 3942109 0.158317833115363 3 NA 0.158317833115363 3 NA 290143 NA 9 12 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APBB1 11 6395124 6419414 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APBB1IP 10 26438203 26567803 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APBB2 4 40810027 41216714 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APBB3 5 140558268 140564781 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APC 5 112707498 112846239 TRUE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 72 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APC2 19 1446302 1473244 FALSE 589 -0.44786516347233 39 1398963 1609436 NA 2 NA NA 2 NA 210473 NA 14 33 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APCDD1 18 10454628 10489948 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APCDD1L 20 58459101 58515131 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APCS 1 159587825 159588865 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APEH 3 49674002 49683963 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 23 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APELA 4 164877004 164898965 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APEX1 14 20455191 20457772 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APEX2 23 55000357 55009057 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 9 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APH1A 1 150265399 150269580 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APH1B 15 63276018 63309126 FALSE 487 0.296385928010631 99 61991730 63677860 0.361681390833996 5 NA 0.361681390833996 5 NA 1686130 NA 13 6 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 API5 11 43311963 43344529 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APIP 11 34853094 34916499 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 7 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APLF 2 68467561 68655862 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 16 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APLN 23 129645259 129654937 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APLNR 11 57233577 57237314 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APLP1 19 35867899 35879791 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 17 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APLP2 11 130068147 130144811 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APMAP 20 24962925 24992979 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 10 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOA1 11 116835751 116837950 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOA2 1 161222292 161223631 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOA4 11 116820700 116823306 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOA5 11 116789367 116792420 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOB 2 21001429 21044073 FALSE 53 -0.728335592696396 27 20687014 21038086 0.255173832388045 0 0 0.255173832388045 0 0 351072 0 2 70 5 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOBEC1 12 7649400 7665903 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 6 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOBEC2 6 41053304 41064511 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOBEC3A 22 38952741 38992778 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOBEC3B 22 38982347 38992804 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOBEC3C 22 39014083 39020352 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOBEC3D 22 39021113 39033276 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOBEC3F 22 39040604 39053910 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOBEC3G 22 39077005 39087743 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOBEC3H 22 39097224 39104067 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 6 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOBEC4 1 183646404 183653316 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOBR 16 28494649 28498970 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOC1 19 44914247 44919349 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 3 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOC2 19 44945982 44949565 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 3 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOC3 11 116829706 116833072 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOC4 19 44942238 44945496 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 3 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOC4-APOC2 19 44942238 44949565 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 6 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOD 3 195568702 195584205 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOE 19 44905754 44909393 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOF 12 56360569 56362823 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOH 17 66212033 66256525 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOL1 22 36253010 36267530 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOL2 22 36226203 36239954 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOL3 22 36140330 36166177 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOL4 22 36189124 36204840 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 8 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOL5 22 35717872 35729483 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOL6 22 35648395 35668409 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOLD1 12 12725917 12829975 FALSE 388 1.43206652229553 122 12717429 12726029 0.397448435712946 14 NA 0.397448435712946 14 NA 8600 NA 2 18 2 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOM 6 31652416 31658210 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOO 23 23833353 23907934 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOOL 23 85003826 85093316 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APOPT1 14 103562962 103607523 FALSE 467 -0.166720648541046 62 102922761 103677490 0.235629703240478 3 NA 0.235629703240478 3 NA 754729 NA 13 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APP 21 25880550 26171128 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APPBP2 17 60443149 60526219 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APPL1 3 57227726 57278105 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APPL2 12 105173296 105236238 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 20 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APRT 16 88809339 88811944 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 APTX 9 32972606 33025168 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AQP1 7 30911694 30925516 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 7 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AQP10 1 154321090 154325325 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AQP11 11 77589391 77610355 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AQP12A 2 240691845 240698483 FALSE 109 -0.204551948627658 52 240042747 240874079 0.261858812358373 3 1 0.261858812358373 3 1 831332 2 13 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AQP12B 2 240676418 240682906 FALSE 109 -0.204551948627658 52 240042747 240874079 0.261858812358373 3 1 0.261858812358373 3 1 831332 2 13 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AQP2 12 49950741 49958881 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AQP3 9 33441154 33447633 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AQP4 18 26852038 26865818 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AQP5 12 49961870 49965681 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AQP6 12 49967194 49977139 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AQP7 9 33383179 33402682 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AQP8 16 25215731 25228940 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AQP9 15 58138169 58185911 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AQR 15 34851782 34969839 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 36 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AR 23 67544032 67730619 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 179 0 TRUE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARAF 23 47561100 47571920 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 23 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARAP1 11 72685069 72793599 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 45 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARAP2 4 35948221 36244509 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 37 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARAP3 5 141653401 141682221 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 35 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARC 8 142611044 142614472 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARCN1 11 118572390 118603033 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 11 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AREG 4 74445134 74455009 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AREL1 14 74653437 74713115 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 18 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARF1 1 228082660 228099212 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARF3 12 48935723 48957551 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARF4 3 57571363 57598220 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARF5 7 127588345 127591705 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARF6 14 49893092 49897054 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 2 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARFGAP1 20 63272785 63289793 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARFGAP2 11 47164299 47177125 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARFGAP3 22 42796502 42858106 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARFGEF1 8 67173511 67343677 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 48 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARFGEF2 20 48921890 49036693 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 39 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARFGEF3 6 138161921 138344663 FALSE 219 0.602641570411187 107 137197170 138296943 0.397448435712946 6 NA 0.397448435712946 6 NA 1099773 NA 6 47 1 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARFIP1 4 152779937 152918463 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARFIP2 11 6474683 6481479 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARFRP1 20 63698642 63708025 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARG1 6 131573144 131584332 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARG2 14 67619798 67651720 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 9 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARGFX 3 121570704 121586634 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARGLU1 13 106541673 106568164 FALSE 441 -0.133025597356164 67 102840913 109206723 0.31995059840763 3 NA 0.31995059840763 3 NA 6365810 NA 12 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP1 11 46677080 46700615 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP10 4 147732063 148072780 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP11A 15 32615144 32639949 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP11B 15 30624494 30638805 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP12 10 31805404 31928876 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP15 2 143091362 143768352 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP17 16 24919385 25015666 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP18 6 129576132 129710225 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP19 10 97222173 97292673 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 14 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP19-SLIT1 10 97153045 97292637 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 19 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP20 11 110577042 110713189 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP21 10 24583609 24723668 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 39 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP22 10 48446034 48656265 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 18 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP23 17 38419280 38512392 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 32 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP24 4 85475114 86002670 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 16 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP25 2 68679601 68826833 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP26 5 142770377 143229011 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP27 17 45393902 45434421 FALSE 562 -0.239849237512674 51 45395530 46066680 NA 2 NA NA 2 NA 671150 NA 8 20 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP28 18 6729718 6915716 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP29 1 94148988 94275068 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 28 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP30 1 161046946 161069970 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP31 3 119294373 119420714 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP32 11 128965060 129279324 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 36 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP33 19 35774532 35788822 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 26 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP35 19 46918676 47005077 TRUE 663 1.01214816723449 115 46850758 47005039 0.397448435712946 10 NA 0.397448435712946 10 NA 154281 NA 2 35 4 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP36 23 131058242 131089883 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP39 8 144529179 144605816 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 20 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP4 23 153907367 153934999 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 32 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP40 20 38601934 38651035 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP42 11 100687653 100993941 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 27 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP44 17 12789539 12991643 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 23 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP45 19 1065923 1086628 FALSE 587 0.217691882461168 93 1042394 1299919 0.39968910724052 4 1 0.39968910724052 4 1 257525 3 12 28 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP5 14 32076114 32159728 FALSE 449 -0.090252011740912 67 31387284 34807549 0.31995059840763 3 NA 0.31995059840763 3 NA 3420265 NA 14 21 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP6 23 11137543 11665701 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 25 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP8 22 44752558 44862788 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGAP9 12 57472255 57488814 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGDIA 17 81867721 81871406 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGDIB 12 14942017 14961728 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGDIG 16 268727 283010 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 21 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF1 19 41883161 41930150 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 28 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF10 8 1823976 1958641 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 32 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF10L 1 17539835 17697874 FALSE 16 0.136831934058324 84 16759339 18631648 0.243587385410565 5 2 0.243587385410565 5 2 1872309 3 15 34 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF11 1 156934840 157045370 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 44 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF12 11 120336914 120489936 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 44 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF15 17 8310241 8322516 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 17 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF16 1 3454426 3481113 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 17 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF17 11 73308289 73369388 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 37 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF18 19 7395113 7472477 FALSE 607 0.372981718355934 101 7112582 7440096 0.397448435712946 5 NA 0.397448435712946 5 NA 327514 NA 4 24 4 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF19 1 16197854 16212609 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 17 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF2 1 155946851 156007070 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 28 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF25 12 57610180 57619379 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF26 3 154121003 154257827 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 19 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF28 5 73626158 73941993 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 43 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF3 3 56727418 57079329 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF33 2 38889841 38975449 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 22 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF35 7 144186083 144195655 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 5 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF37 5 149551947 149634968 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF38 4 105552620 105708093 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 25 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF39 9 35658875 35675866 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF4 2 130836916 131047263 FALSE 84 -0.292186070013859 45 130656603 132790182 1 2 1 1 2 1 2133579 1 16 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF40 14 21070270 21090240 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 32 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF5 7 144355288 144380632 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 19 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF6 23 136665547 136782088 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 22 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF7 13 111114559 111305737 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 28 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARHGEF9 23 63634967 63809274 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 14 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARID1A 1 26693236 26782110 TRUE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 53 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARID1B 6 156776020 157210779 TRUE 224 -0.117433393604286 66 152211521 156776133 0.330876988437597 3 0 0.330876988437597 3 0 4564612 3 15 102 2 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARID2 12 45729665 45908040 TRUE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 53 2 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARID3A 19 925781 975934 TRUE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARID3B 15 74541177 74598131 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARID3C 9 34621379 34628107 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARID4A 14 58298385 58373887 TRUE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 29 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARID4B 1 235131634 235328219 TRUE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 41 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARID5A 2 96536743 96552638 FALSE 73 0.130965048807663 86 96195440 96642849 0.360033220093454 4 NA 0.360033220093454 4 NA 447409 NA 10 12 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARID5B 10 61901300 62096944 TRUE 324 0.504242099052201 104 60086767 62198353 0.397448435712946 6 NA 0.397448435712946 6 NA 2111586 NA 7 49 3 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARIH1 15 72474326 72602985 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 16 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARIH2 3 48918821 48986382 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 19 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARIH2OS 3 48917782 48919385 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL1 12 101393120 101407820 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 6 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL10 5 176365468 176401865 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 18 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL11 13 49628299 49633872 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL13A 23 100969708 100990829 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL13B 3 93980139 94055668 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL14 3 160677159 160678452 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL14EP 11 30323051 30338227 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL14EPL 5 116032324 116060118 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL15 5 53883945 54310582 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL16 17 81681174 81683924 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL17A 17 46516702 46579682 FALSE 563 -1.07261267965258 19 46067588 46694644 0.39968910724052 0 0 0.39968910724052 0 0 627056 0 6 15 2 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL17B 17 46274784 46361797 FALSE 563 -1.07261267965258 19 46067588 46694644 0.39968910724052 0 0 0.39968910724052 0 0 627056 0 6 11 2 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL2 11 65014113 65022184 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL2-SNX15 11 65014182 65040570 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL2BP 16 57245098 57253635 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL3 10 102673731 102714407 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL4A 7 12686856 12690934 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL4C 2 234493041 234497053 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL4D 17 43398959 43401137 FALSE 558 -0.437962745946443 39 43180803 43527818 NA 2 NA NA 2 NA 347015 NA 5 3 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL5A 2 151788984 151828492 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL5B 10 18659405 18681639 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL5C 17 39156894 39167484 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL6 3 97764521 97801242 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL6IP1 16 18791667 18801678 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL6IP4 12 122980060 122982913 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL6IP5 3 69084944 69106066 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL6IP6 2 152717893 152761253 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 6 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL8A 1 202133404 202144743 FALSE 37 0.422972367154532 103 202010393 202741677 0.397448435712946 5 NA 0.397448435712946 5 NA 731284 NA 9 7 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL8B 3 5122220 5180912 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARL9 4 56505209 56525481 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMC1 8 65602456 65634217 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMC10 7 103074881 103099764 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMC12 6 35737032 35749079 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMC2 6 108848416 108974472 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 19 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMC3 10 22928024 23038523 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMC4 10 27812164 27999048 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMC5 16 31458080 31467166 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMC6 19 19033575 19060311 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMC7 17 75109952 75130265 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMC8 3 138187248 138298389 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 24 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMC9 2 231198546 231374837 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 24 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMCX1 23 101550531 101554700 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMCX2 23 101655281 101659891 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMCX3 23 101622797 101627843 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMCX4 23 101418287 101533459 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 25 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMCX5 23 102599168 102604159 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMCX6 23 101615118 101618001 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMH1 1 44674692 44725591 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMH2 6 24797321 24798889 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMH3 10 101845599 102056193 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMH4 14 57999735 58298139 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 38 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMS2 10 122454653 122457352 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARMT1 6 151452258 151470101 FALSE 223 0.236892508535766 96 150395481 152208217 0.39968910724052 4 1 0.39968910724052 4 1 1812736 3 10 9 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARNT 1 150809705 150876768 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARNT2 15 80404350 80597937 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARNTL 11 13276652 13387266 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARNTL2 12 27332854 27425289 FALSE 395 1.05231732428215 116 26055418 27646129 0.397448435712946 10 NA 0.397448435712946 10 NA 1590711 NA 13 18 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARPC1A 7 99325910 99366262 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARPC1B 7 99374249 99394816 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARPC2 2 218217094 218254356 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARPC3 12 110434825 110450422 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARPC4 3 9792495 9807726 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARPC4-TTLL3 3 9793082 9835401 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 22 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARPC5 1 183620846 183635757 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARPC5L 9 124862130 124877733 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARPIN 15 89895006 89912956 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARPP19 15 52547045 52569883 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARPP21 3 35638945 35794496 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARR3 23 70268305 70281840 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 16 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARRB1 11 75264182 75351705 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARRB2 17 4710489 4721499 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 14 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARRDC1 9 137605654 137615360 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARRDC2 19 18001132 18014102 FALSE 633 -0.0653644831439953 67 17843737 18149705 0.31995059840763 3 NA 0.31995059840763 3 NA 305968 NA 8 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARRDC3 5 91368724 91383359 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARRDC4 15 97960698 97973838 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARRDC5 19 4890437 4902867 FALSE 602 -0.510436259887525 35 4818366 5153517 0.252021069663427 1 0 0.252021069663427 1 0 335151 1 5 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARSA 22 50622754 50628173 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARSB 5 78777209 78986087 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARSD 23 2903970 2929351 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 13 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARSE 23 2934632 2968310 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 14 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARSF 23 3041471 3112726 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 12 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARSG 17 68259182 68422731 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARSH 23 3006613 3033571 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 12 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARSI 5 150296343 150339307 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARSJ 4 113900284 113979727 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARSK 5 95555074 95605064 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ART1 11 3645128 3664416 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ART3 4 76011184 76112802 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 21 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ART4 12 14825569 14843533 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 6 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ART5 11 3638503 3642316 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 6 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARTN 1 43933320 43937241 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARV1 1 230978981 231000595 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARVCF 22 19969896 20016808 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 20 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ARX 23 25003694 25016420 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 9 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AS3MT 10 102869516 102901899 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASAH1 8 18055992 18084998 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASAH2 10 50182778 50248610 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASAH2B 10 50739318 50816495 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASAP1 8 130052104 130443660 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 33 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASAP2 2 9206765 9405683 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 29 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASAP3 1 23428563 23484568 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB1 2 238426742 238452250 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB10 7 151175698 151187832 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB11 23 15281697 15315656 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB12 23 64224196 64230631 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB13 10 5638867 5666595 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB14 3 57268347 57292682 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB15 7 123567010 123639481 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB16 17 44170447 44179083 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB17 1 75918873 75932431 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB18 2 236194872 236264409 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB2 14 93934153 93976791 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB3 2 53532672 53787610 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 15 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB4 7 95478444 95540232 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB5 4 176213673 176277571 FALSE 157 0.0251014068813815 77 176192989 182751835 0.252310779181821 4 NA 0.252310779181821 4 NA 6558846 NA 7 7 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB6 9 129634604 129642169 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 10 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB7 15 100602534 100651705 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB8 12 48147788 48181213 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASB9 23 15235288 15270467 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASCC1 10 72096032 72217134 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASCC2 22 29788608 29838304 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 19 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASCC3 6 100508194 100881372 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 47 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASCL1 12 102957686 102960516 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASCL2 11 2268495 2270952 FALSE 341 0.150532842564489 86 2129151 2776033 0.360033220093454 4 NA 0.360033220093454 4 NA 646882 NA 11 3 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASCL3 11 8937579 8938211 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 3 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASCL4 12 107774385 107776644 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASCL5 1 201113953 201127184 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASF1A 6 118894220 118909167 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASF1B 19 14119509 14136956 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASGR1 17 7173431 7179564 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASGR2 17 7101322 7115700 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 8 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASH1L 1 155335268 155562807 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 48 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASH2L 8 38105242 38144076 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 17 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASIC1 12 50057548 50083611 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASIC2 17 33013087 34174964 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASIC3 7 151048292 151052756 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASIC4 2 219514170 219538772 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 13 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASIC5 4 155829729 155866273 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASIP 20 34194569 34269344 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASL 7 66075798 66093558 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASNA1 19 12737139 12748323 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASNS 7 97852118 97872542 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASNSD1 2 189661385 189670831 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 12 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASPA 17 3472374 3503419 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASPDH 19 50511600 50514690 FALSE 670 -0.191579946531989 57 50417807 50629807 0.158317833115363 3 NA 0.158317833115363 3 NA 212000 NA 10 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASPG 14 104085679 104115581 FALSE 470 -0.28238273283378 51 103746376 104759488 NA 2 NA NA 2 NA 1013112 NA 11 17 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASPH 8 61500556 61714640 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 33 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASPHD1 16 29900375 29919864 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASPHD2 22 26429273 26445015 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASPM 1 197084128 197146694 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 56 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASPN 9 92456205 92482506 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASPRV1 2 69960089 69962265 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASPSCR1 17 81976807 82017406 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 19 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASRGL1 11 62337448 62393412 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASS1 9 130444929 130501274 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 15 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASTE1 3 131013875 131027649 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 11 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASTL 2 96123850 96138436 FALSE 72 -0.297431743288301 44 95106429 96195026 0.213873728132233 2 0 0.213873728132233 2 0 1088597 2 15 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASTN1 1 176857302 177164973 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 30 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASTN2 9 116425225 117415070 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 35 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASXL1 20 32358330 32439319 TRUE 689 0.316430543791893 99 32330098 32885548 0.361681390833996 5 NA 0.361681390833996 5 NA 555450 NA 9 46 5 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASXL2 2 25733753 25878516 TRUE 56 0.00177645496183448 77 25244133 26472685 0.252310779181821 4 NA 0.252310779181821 4 NA 1228552 NA 12 50 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASXL3 18 33578233 33751192 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 33 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ASZ1 7 117363222 117428123 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATAD1 10 87751512 87841343 FALSE 329 -0.116680330790243 67 86927969 87862413 0.31995059840763 3 NA 0.31995059840763 3 NA 934444 NA 13 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATAD2 8 123319850 123416350 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 30 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATAD2B 2 23748664 23927114 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 33 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATAD3A 1 1512151 1534687 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 18 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATAD3B 1 1471769 1497848 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 19 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATAD3C 1 1449689 1470158 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 13 3 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATAD5 17 30831970 30895869 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 33 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATAT1 6 30626842 30646823 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 15 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATCAY 19 3879864 3928079 FALSE 598 -0.201030278929954 57 3651966 3942109 0.158317833115363 3 NA 0.158317833115363 3 NA 290143 NA 9 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATE1 10 121740421 121928801 FALSE 338 0.566782833688636 105 120905357 121841237 0.397448435712946 6 NA 0.397448435712946 6 NA 935880 NA 3 15 0 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATF1 12 50763710 50821122 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATF2 2 175072250 175168382 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 13 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATF3 1 212565334 212620777 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATF4 22 39519695 39522685 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATF5 19 49928702 49933935 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATF6 1 161766294 161964070 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATF6B 6 32115264 32128253 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 19 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATF7 12 53507856 53626410 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATF7IP 12 14365632 14502935 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 25 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATF7IP2 16 10326434 10483638 FALSE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 14 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG10 5 81972025 82276857 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 8 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG101 12 52069246 52077494 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG12 5 115828200 115841858 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG13 11 46617527 46674818 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG14 14 55366392 55411858 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 11 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG16L1 2 233210051 233295674 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG16L2 11 72814308 72843674 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG2A 11 64894546 64917248 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 45 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG2B 14 96279202 96363870 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 46 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG3 3 112532509 112562046 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG4A 23 108091668 108154671 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG4B 2 241637213 241673857 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 13 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG4C 1 62784135 62865513 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG4D 19 10543895 10553418 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG5 6 106045423 106325791 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 40 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG7 3 11272309 11557665 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG9A 2 219219380 219229717 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 19 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATG9B 7 151012209 151024499 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 22 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATIC 2 215311817 215349773 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATL1 14 50532509 50633068 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 15 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATL2 2 38294880 38377285 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 18 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATL3 11 63624087 63671921 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATM 11 108222484 108369102 TRUE 366 0.600098570624829 107 108223106 108368901 0.397448435712946 6 NA 0.397448435712946 6 NA 145795 NA 2 130 13 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATMIN 16 81035847 81047358 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATN1 12 6924463 6942321 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 18 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATOH1 4 93828753 93830964 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATOH7 10 68230624 68232103 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATOH8 2 85751344 85788066 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATOX1 5 151742316 151772532 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP10A 15 25677273 25865172 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 29 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP10B 5 160563120 160852214 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 28 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP10D 4 47485288 47593486 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 30 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP11A 13 112690329 112887168 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 32 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP11B 3 182793500 182921635 FALSE 130 -0.00522135394688705 77 182793805 182938070 0.252310779181821 4 NA 0.252310779181821 4 NA 144265 NA 1 30 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP11C 23 139726346 139945276 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 34 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP12A 13 24680411 24712493 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 25 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP13A1 19 19645198 19663693 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP13A2 1 16985958 17011928 FALSE 16 0.136831934058324 84 16759339 18631648 0.243587385410565 5 2 0.243587385410565 5 2 1872309 3 15 33 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP13A3 3 194402672 194498364 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 31 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP13A4 3 193402077 193593111 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 30 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP13A5 3 193274790 193378843 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 30 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP1A1 1 116372668 116410261 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP1A2 1 160115759 160143591 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP1A3 19 41966582 41997497 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 25 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP1A4 1 160151570 160186977 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP1B1 1 169105697 169132722 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP1B2 17 7646627 7657768 FALSE 540 -0.560247871447121 34 7559238 7654707 0.312402751065481 1 0 0.312402751065481 1 0 95469 1 12 7 1 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP1B3 3 141876124 141926514 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP1B4 23 120362085 120383249 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP23 12 57906039 57959148 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP2A1 16 28878405 28904509 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP2A2 12 110280756 110351093 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 23 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP2A3 17 3923870 3964464 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 25 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP2B1 12 89588049 89709300 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 25 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP2B2 3 10324023 10708007 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 31 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP2B3 23 153517676 153582939 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 25 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP2B4 1 203626561 203744081 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 26 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP2C1 3 130850595 131016712 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 32 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP2C2 16 84368527 84464187 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 30 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP4A 19 35550043 35563658 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 24 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP4B 13 113648804 113658186 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5F1A 18 46080248 46104334 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 12 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5F1B 12 56638175 56646068 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5F1C 10 7788129 7807815 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5F1D 19 1241746 1244826 FALSE 587 0.217691882461168 93 1042394 1299919 0.39968910724052 4 1 0.39968910724052 4 1 257525 3 12 4 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5F1E 20 59025467 59032382 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5IF1 1 28236109 28246906 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5MC1 17 48892765 48895871 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5MC2 12 53632726 53677408 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5MC3 2 175176258 175184607 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5MD 10 103389041 103396492 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5ME 4 672436 674338 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5MF 7 99448475 99466331 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5MF-PTCD1 7 99419749 99466197 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5MG 11 118401154 118431496 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5MGL 22 42639803 42640601 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5MPL 14 103912288 103928269 FALSE 470 -0.28238273283378 51 103746376 104759488 NA 2 NA NA 2 NA 1013112 NA 11 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5PB 1 111448864 111462773 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5PD 17 75038863 75046985 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5PF 21 25716503 25735673 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5PO 21 33903453 33915980 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP5S 14 50312326 50335558 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 10 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6AP1 23 154428632 154436516 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6AP1L 5 82279462 82386977 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6AP2 23 40579372 40606848 FALSE 709 -0.360421027642709 43 40084126 41229701 1 1 0 1 1 0 1145575 1 6 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V0A1 17 42458844 42522611 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 22 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V0A2 12 123712318 123761755 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 20 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V0A4 7 138706294 138799560 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 21 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V0B 1 43974487 43978295 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V0C 16 2513870 2520218 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V0D1 16 67438014 67481237 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V0D2 8 85987323 86154228 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V0E1 5 172983757 173035445 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V0E2 7 149872968 149891204 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1A 3 113747019 113812056 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1B1 2 70935868 70965431 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1B2 8 20197367 20226819 TRUE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1C1 8 103021063 103073051 FALSE 273 0.0471800530858091 82 102651830 103432781 0.298111653356898 4 NA 0.298111653356898 4 NA 780951 NA 9 12 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1C2 2 10721100 10785110 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 15 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1D 14 67294371 67360265 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 20 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1E1 22 17592136 17628818 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1E2 2 46490750 46542557 FALSE 59 -0.32871660107588 46 46484402 47170815 NA 2 NA NA 2 NA 686413 NA 11 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1F 7 128862826 128865844 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1FNB 7 128866308 128872044 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1G1 9 114587746 114598373 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1G2 6 31544462 31548427 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1G2-DDX39B 6 31530219 31546608 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1G3 1 198523222 198540945 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP6V1H 8 53715557 53843558 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP7A 23 77910656 78050395 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 31 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP7B 13 51930436 52012125 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 28 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP8A1 4 42408373 42657105 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 38 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP8A2 13 25372071 26025851 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 37 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP8B1 18 57646426 57803315 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 30 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP8B2 1 154325553 154351307 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 31 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP8B3 19 1782075 1812276 FALSE 591 -0.292096165521122 44 1753671 2129102 0.213873728132233 2 0 0.213873728132233 2 0 375431 2 13 32 7 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP8B4 15 49858238 50182817 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 32 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP9A 20 51596514 51768634 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATP9B 18 79069285 79378287 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 31 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATPAF1 1 46632737 46673867 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 15 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATPAF2 17 17977409 18039209 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 21 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATR 3 142449235 142578826 TRUE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 61 7 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATRAID 2 27212027 27217178 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATRIP 3 48446710 48467645 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 22 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATRN 20 3471040 3651122 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 31 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATRNL1 10 115093365 115948992 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 32 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATRX 23 77504878 77786233 TRUE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 75 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATXN1 6 16299112 16761491 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 9 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATXN10 22 45671798 45845307 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATXN1L 16 71845991 71885268 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 16 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATXN2 12 111443485 111599676 TRUE 420 1.09743664526736 116 111406043 111453794 0.397448435712946 10 NA 0.397448435712946 10 NA 47751 NA 2 49 1 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATXN2L 16 28823035 28837237 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 26 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATXN3 14 92044496 92106625 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 11 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATXN3L 23 13318236 13320399 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATXN7 3 63864557 64003462 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 38 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATXN7L1 7 105605067 105876604 FALSE 247 -0.18197294596649 62 105388711 106112210 0.235629703240478 3 NA 0.235629703240478 3 NA 723499 NA 7 19 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATXN7L2 1 109483479 109492804 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATXN7L3 17 44191805 44200113 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ATXN7L3B 12 74537827 74545430 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AUH 9 91213815 91361913 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AUNIP 1 25831913 25859458 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AUP1 2 74526645 74529939 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AURKA 20 56369389 56392337 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AURKAIP1 1 1373730 1375495 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AURKB 17 8204733 8210600 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AURKC 19 57230802 57235548 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AUTS2 7 69598296 70793495 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 28 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AVEN 15 33866227 34039176 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AVIL 12 57797376 57818704 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 20 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AVL9 7 32495426 32588721 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 19 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AVP 20 3082556 3084724 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AVPI1 10 97677424 97687323 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AVPR1A 12 63142759 63150942 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AVPR1B 1 206109692 206117699 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AVPR2 23 153902531 153907166 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AWAT1 23 70234655 70240627 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 7 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AWAT2 23 70040542 70049938 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 7 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AXDND1 1 179365720 179554735 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 29 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AXIN1 16 287440 352673 TRUE 506 1.04582101787025 115 287678 352701 0.397448435712946 10 NA 0.397448435712946 10 NA 65023 NA 1 19 6 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AXIN2 17 65528563 65561647 TRUE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 27 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AXL 19 41219203 41261766 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 32 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AZGP1 7 99966720 99976157 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AZI2 3 28315003 28349127 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AZIN1 8 102826357 102893864 FALSE 273 0.0471800530858091 82 102651830 103432781 0.298111653356898 4 NA 0.298111653356898 4 NA 780951 NA 9 10 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AZIN2 1 33081104 33120530 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 AZU1 19 825097 832018 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 6 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B2M 15 44711487 44718877 TRUE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GALNT1 3 161083883 161105384 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GALNT2 1 235449923 235504481 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GALT1 2 167868948 167874041 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GALT2 1 193179045 193186654 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GALT4 6 33277132 33284832 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GALT5 21 39556442 39673137 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GALT6 1 1232226 1235041 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GAT1 11 134378504 134411918 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GAT2 6 70856679 70957038 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GAT3 11 62615296 62622175 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GLCT 13 31199936 31332276 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 15 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GNT2 2 62196113 62224731 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GNT3 19 17794828 17813082 FALSE 632 0.669211234199231 108 17784949 17843451 0.397448435712946 7 NA 0.397448435712946 7 NA 58502 NA 4 6 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GNT4 12 122203543 122208952 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GNT5 3 183253244 183298504 FALSE 132 0.047780091570414 82 183015581 183427934 0.298111653356898 4 NA 0.298111653356898 4 NA 412353 NA 4 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GNT6 11 77034398 77041973 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GNT7 2 231395543 231401164 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GNT8 19 41425359 41428730 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 5 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GNT9 16 67148105 67151214 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B3GNTL1 17 82942155 83051810 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 13 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B4GALNT1 12 57623410 57633355 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 32 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B4GALNT2 17 49132460 49176840 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 12 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B4GALNT3 12 460364 563509 FALSE 375 0.00440437382068143 77 66864 894588 0.252310779181821 4 NA 0.252310779181821 4 NA 827724 NA 8 24 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B4GALNT4 11 369796 382116 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 21 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B4GALT1 9 33104082 33167356 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B4GALT2 1 43978943 43991170 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B4GALT3 1 161171310 161177968 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B4GALT4 3 119211732 119241103 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 7 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B4GALT5 20 49632945 49713878 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B4GALT6 18 31622247 31685836 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B4GALT7 5 177600100 177610347 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 8 1 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B4GAT1 11 66345372 66347692 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B9D1 17 19337554 19378193 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 11 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 B9D2 19 41354421 41364173 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAALC 8 103140710 103230305 FALSE 273 0.0471800530858091 82 102651830 103432781 0.298111653356898 4 NA 0.298111653356898 4 NA 780951 NA 9 3 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAAT 9 101360417 101383519 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BABAM1 19 17267350 17281249 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 9 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BABAM2 2 27889941 28338901 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BACE1 11 117285207 117316259 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BACE2 21 41167801 41282518 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BACH1 21 29194071 29630751 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BACH2 6 89926529 90296908 TRUE 203 -0.328974867549418 46 89713302 90586867 NA 2 NA NA 2 NA 873565 NA 5 13 3 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAD 11 64269830 64284704 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAG1 9 33247820 33264720 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAG2 6 57172326 57189833 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAG3 10 119651370 119677819 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAG4 8 38176533 38213301 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAG5 14 103556544 103562831 FALSE 467 -0.166720648541046 62 102922761 103677490 0.235629703240478 3 NA 0.235629703240478 3 NA 754729 NA 13 7 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAG6 6 31639028 31652705 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 27 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAHCC1 17 81395475 81466332 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 43 8 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAHD1 15 40439721 40468242 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAIAP2 17 81035122 81117432 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 19 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAIAP2L1 7 98291651 98401068 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 16 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAIAP2L2 22 38084889 38110670 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAIAP3 16 1333601 1349441 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 30 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAK1 6 33572547 33580293 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAMBI 10 28677342 28682939 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BANF1 11 66002079 66004149 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BANF2 20 17693672 17735871 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 3 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BANK1 4 101411286 102074812 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 19 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BANP 16 87949244 88077318 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAP1 3 52401013 52410350 TRUE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 28 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BARD1 2 214725646 214809711 TRUE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 37 10 TRUE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BARHL1 9 132582185 132590266 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BARHL2 1 90711539 90717237 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BARX1 9 93951622 93955372 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BARX2 11 129375940 129452279 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BASP1 5 17065598 17276843 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BATF 14 75522425 75547015 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 4 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BATF2 11 64987943 64997045 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BATF3 1 212686418 212699985 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 3 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAX 19 48954815 48961798 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAZ1A 14 34752731 34875647 FALSE 449 -0.090252011740912 67 31387284 34807549 0.31995059840763 3 NA 0.31995059840763 3 NA 3420265 NA 14 31 1 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAZ1B 7 73440398 73522278 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAZ2A 12 56595596 56636816 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 37 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BAZ2B 2 159318979 159616692 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 46 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BBC3 19 47220822 47232766 TRUE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 9 2 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BBIP1 10 110898730 110919274 FALSE 336 0.281281646454176 97 110567687 113628982 0.39968910724052 4 NA 0.39968910724052 4 NA 3061295 NA 14 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BBOF1 14 74019353 74082863 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 27 2 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BBOX1 11 27040725 27127809 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BBS1 11 66510606 66533627 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BBS10 12 76344474 76348442 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BBS12 4 122732702 122744943 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BBS2 16 56466836 56520283 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 27 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BBS4 15 72686179 72738476 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 16 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BBS5 2 169479178 169506655 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BBS7 4 121824440 121870497 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 19 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BBS9 7 33129244 33606068 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 22 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BBX 3 107522936 107811324 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCAM 19 44809059 44821421 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCAN 1 156641390 156659532 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCAP29 7 107579977 107629170 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCAP31 23 153700492 153724746 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCAR1 16 75228187 75268053 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCAR3 1 93561786 93847150 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCAS1 20 53936777 54070594 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCAS2 1 114567557 114581639 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCAS3 17 60677453 61392838 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 28 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCAS4 20 50794894 50882676 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCAT1 12 24810022 24949459 FALSE 393 2.14911654701118 126 23740959 25194896 0.397448435712946 25 NA 0.397448435712946 25 NA 1453937 NA 4 12 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCAT2 19 48795062 48811029 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCCIP 10 125823546 125853695 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCDIN3D 12 49836039 49843129 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCHE 3 165772904 165837472 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCKDHA 19 41397460 41425005 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 11 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCKDHB 6 80106647 80346270 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCKDK 16 31106107 31112791 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL10 1 85265776 85276904 TRUE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL11A 2 60450520 60555154 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 13 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL11B 14 99169287 99271524 TRUE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL2 18 63123346 63320128 FALSE 584 1.2333686374574 119 62979421 63319866 0.397448435712946 12 NA 0.397448435712946 12 NA 340445 NA 2 44 4 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL2A1 15 79960889 79971446 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 4 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL2L1 20 31664452 31723989 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL2L10 15 52109263 52112775 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 4 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL2L11 2 111119378 111168447 TRUE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 29 4 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL2L12 19 49665142 49673916 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL2L13 22 17628855 17730855 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL2L14 12 12049844 12211084 FALSE 387 -0.113542447011735 67 12079487 12714097 0.31995059840763 3 NA 0.31995059840763 3 NA 634610 NA 7 32 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL2L15 1 113878168 113887547 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL2L2 14 23298790 23311759 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 20 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL2L2-PABPN1 14 23306835 23325369 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 24 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL3 19 44747705 44760044 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL6 3 187721377 187745727 FALSE 137 0.632133845014845 107 187371138 189902345 0.397448435712946 7 NA 0.397448435712946 7 NA 2531207 NA 7 20 1 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL6B 17 7023020 7030290 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL7A 12 122019422 122062044 FALSE 424 1.53516453564455 123 122019645 122061747 0.397448435712946 15 NA 0.397448435712946 15 NA 42102 NA 1 23 0 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL7B 7 73536356 73558002 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL7C 16 30833626 30894960 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL9 1 147541412 147626216 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCL9L 11 118893875 118925608 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 25 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCLAF1 6 136256627 136289851 FALSE 218 -0.114845236609927 67 135285636 137194883 0.31995059840763 3 NA 0.31995059840763 3 NA 1909247 NA 10 16 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCLAF3 23 19912860 19970298 FALSE 706 0.169663593513349 90 19670859 20156144 0.275334878251284 2 NA 0.275334878251284 2 NA 485285 NA 5 15 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCO1 16 81238448 81291142 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCO2 11 112175467 112224699 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCOR 23 40049815 40177329 TRUE 708 0.383222066698039 101 38804946 40077899 0.397448435712946 2 NA 0.397448435712946 2 NA 1272953 NA 2 50 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCORL1 23 129981107 130058083 TRUE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 45 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCR 22 23179704 23318037 FALSE 699 0.574625929111304 105 23180517 23274529 0.397448435712946 6 NA 0.397448435712946 6 NA 94012 NA 1 169 45 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BCS1L 2 218658764 218663443 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BDH1 3 197509783 197573323 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BDH2 4 103079435 103099883 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BDKRB1 14 96255824 96268967 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BDKRB2 14 96204679 96244166 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BDNF 11 27654893 27722058 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BDP1 5 71455615 71567820 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 52 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEAN1 16 66427297 66493529 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BECN1 17 42810134 42833350 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BECN2 1 241957767 241959062 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEGAIN 14 100537147 100587413 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEND2 23 18162931 18220883 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 18 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEND3 6 107065182 107115269 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEND4 4 42110938 42152878 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEND5 1 48727523 48776969 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEND6 6 56955126 57027342 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEND7 10 13438484 13528974 FALSE 315 0.228244116357697 94 12828838 14820149 0.39968910724052 4 NA 0.39968910724052 4 NA 1991311 NA 13 11 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEST1 11 61949821 61965515 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEST2 19 12751702 12758458 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEST3 12 69643360 69699476 FALSE 415 0.0296903115421813 74 69585546 71157651 0.246063395031215 4 2 0.246063395031215 4 2 1572105 2 11 14 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEST4 1 44783585 44787705 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BET1 7 93962762 94004382 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BET1L 11 167784 207428 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 13 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEX1 23 103062651 103064240 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEX2 23 103309346 103311046 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEX3 23 103376340 103378077 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEX4 23 103215092 103217246 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BEX5 23 102153708 102156057 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BFAR 16 14632815 14669236 FALSE 519 -0.0068915740419202 77 14482806 15617149 0.252310779181821 4 NA 0.252310779181821 4 NA 1134343 NA 15 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BFSP1 20 17493905 17569220 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 13 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BFSP2 3 133399995 133475222 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 8 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BGLAP 1 156241962 156243321 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BGN 23 153494939 153509554 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BHLHA15 7 98211427 98212979 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BHLHA9 17 1270559 1271460 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 3 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BHLHB9 23 102720688 102753540 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BHLHE22 8 64580367 64583628 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BHLHE23 20 63005927 63007035 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BHLHE40 3 4979116 4985323 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BHLHE41 12 26120026 26125127 FALSE 395 1.05231732428215 116 26055418 27646129 0.397448435712946 10 NA 0.397448435712946 10 NA 1590711 NA 13 9 1 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BHMG1 19 45733251 45764534 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 15 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BHMT 5 79111779 79132290 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BHMT2 5 79069717 79089466 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BICC1 10 58513140 58831437 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 21 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BICD1 12 32106835 32383633 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BICD2 9 92711363 92764812 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 15 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BICDL1 12 119989869 120094494 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BICDL2 16 3027682 3036926 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 10 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BICRA 19 47608196 47703277 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 25 5 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BICRAL 6 42746958 42868560 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BID 22 17734138 17774770 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BIK 22 43110748 43129712 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BIN1 2 127048027 127107355 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 22 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BIN2 12 51281038 51324668 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BIN3 8 22620418 22669148 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BIRC2 11 102347211 102378670 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BIRC3 11 102317450 102339403 FALSE 364 0.700986600265991 111 102083149 102336201 0.397448435712946 7 NA 0.397448435712946 7 NA 253052 NA 3 31 2 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BIRC5 17 78214186 78225636 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BIRC6 2 32357028 32618899 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 89 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BIRC7 20 63235883 63240507 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BIRC8 19 53289601 53291626 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 3 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BIVM 13 102799049 102841535 FALSE 440 -0.576133065842435 32 102637150 102839818 0.364170154096734 1 0 0.364170154096734 1 0 202668 1 8 12 0 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BIVM-ERCC5 13 102799110 102875994 FALSE 440 -0.576133065842435 32 102637150 102839818 0.364170154096734 1 0 0.364170154096734 1 0 202668 1 8 45 2 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLCAP 20 37492472 37527931 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLID 11 122115354 122116215 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLK 8 11486894 11564604 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 13 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLM 15 90717327 90816165 TRUE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 39 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLMH 17 30248195 30292056 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLNK 10 96191702 96271587 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLOC1S1 12 55716037 55720087 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLOC1S1-RDH5 12 55716036 55724703 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLOC1S2 10 100273280 100286712 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLOC1S3 19 45178745 45181801 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 3 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLOC1S4 4 6716055 6717671 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLOC1S5 6 8013567 8064414 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLOC1S5-TXNDC5 6 7881522 8064364 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 17 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLOC1S6 15 45587123 45615999 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLVRA 7 43758680 43807342 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 8 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLVRB 19 40447765 40465840 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BLZF1 1 169367970 169396540 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMF 15 40087890 40108892 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMI1 10 22321211 22331484 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMP1 8 22164736 22212326 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 24 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMP10 2 68865481 68871517 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMP15 23 50910784 50916607 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMP2 20 6767664 6780280 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 6 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMP2K 4 78776342 78916372 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMP3 4 81030965 81057531 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMP4 14 53949736 53958761 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 8 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMP5 6 55753645 55875564 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMP6 6 7726797 7881422 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMP7 20 57168748 57266629 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMP8A 1 39491646 39525935 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMP8B 1 39757182 39788861 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 15 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMPER 7 33904308 34156356 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 17 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMPR1A 10 86756601 86932838 TRUE 328 0.608722295057509 107 86716771 86927605 0.397448435712946 7 NA 0.397448435712946 7 NA 210834 NA 2 35 0 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMPR1B 4 94757968 95158448 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMPR2 2 202376936 202567751 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMS1 10 42782801 42834937 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 25 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMT2 7 112819147 112939916 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BMX 23 15464246 15556529 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 21 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BNC1 15 83255903 83284714 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 15 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BNC2 9 16409503 16870843 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BNIP1 5 173144442 173164387 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BNIP2 15 59659146 59689534 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BNIP3 10 131966455 131982013 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BNIP3L 8 26382898 26505636 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BNIPL 1 151036321 151047720 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BOC 3 113211003 113287459 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BOD1 5 173607514 173616660 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BOD1L1 4 13568738 13627723 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 51 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BOD1L2 18 57147062 57150300 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BOK 2 241551424 241574138 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BOLA1 1 149887890 149900798 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BOLA2 16 29443056 29454964 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BOLA2-SMG1P6 16 29443230 29454651 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BOLA3 2 74135398 74147994 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BOLL 2 197726879 197786762 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BOP1 8 144262102 144291370 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BORA 13 72727749 72756198 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 27 0 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BORCS5 12 12357079 12469694 FALSE 387 -0.113542447011735 67 12079487 12714097 0.31995059840763 3 NA 0.31995059840763 3 NA 634610 NA 7 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BORCS6 17 8188333 8190907 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BORCS7 10 102854223 102864961 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BORCS7-ASMT 10 102854272 102901899 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BORCS8 19 19176903 19192591 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BORCS8-MEF2B 19 19145567 19192158 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BPGM 7 134646808 134679813 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BPHL 6 3118374 3153578 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BPI 20 38304123 38337505 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BPIFA1 20 33235995 33243311 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BPIFA2 20 33161768 33181412 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BPIFA3 20 33217310 33227758 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BPIFB1 20 33273480 33309878 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BPIFB2 20 33007600 33023709 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BPIFB3 20 33055424 33073628 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BPIFB4 20 33079644 33111751 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BPIFB6 20 33031648 33044047 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 13 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BPIFC 22 32413847 32464484 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BPNT1 1 220057482 220090462 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BPTF 17 67825524 67984378 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 50 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRAF 7 140719327 140924928 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 137 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRAP 12 111642146 111685986 FALSE 421 -0.0176554379426518 77 111455010 112163629 0.252310779181821 4 NA 0.252310779181821 4 NA 708619 NA 11 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRAT1 7 2537877 2555727 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 19 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRCA1 17 43044295 43170245 TRUE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 120 25 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRCA2 13 32315474 32400266 TRUE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 85 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRCC3 23 155071420 155123074 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRD1 22 49773283 49827512 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRD2 6 32968660 32981505 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRD3 9 134030305 134068535 FALSE 306 -0.140346870455269 62 133636322 134157948 0.235629703240478 3 NA 0.235629703240478 3 NA 521626 NA 6 19 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRD3OS 9 134025439 134034666 FALSE 306 -0.140346870455269 62 133636322 134157948 0.235629703240478 3 NA 0.235629703240478 3 NA 521626 NA 6 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRD4 19 15235519 15332545 FALSE 625 0.847979048109342 113 15160025 15332467 0.397448435712946 8 NA 0.397448435712946 8 NA 172442 NA 3 54 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRD7 16 50313487 50368934 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRD8 5 138139766 138178986 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 33 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRD9 5 850291 892824 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRDT 1 91949371 92014426 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRF1 14 105209286 105315589 FALSE 474 -0.136925231270881 62 104993000 105529597 0.235629703240478 3 NA 0.235629703240478 3 NA 536597 NA 15 30 4 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRF2 8 37843268 37849904 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRI3 7 98252379 98310441 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRI3BP 12 124993700 125031231 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRICD5 16 2209253 2211950 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRINP1 9 119153458 119369467 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRINP2 1 177171497 177282422 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRINP3 1 190097662 190478404 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRIP1 17 61681266 61863521 TRUE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 50 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRIX1 5 34915376 34925996 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 11 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRK1 3 10115592 10127190 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRMS1 11 66337333 66345125 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRMS1L 14 35826318 35932325 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 10 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BROX 1 222712553 222735196 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRPF1 3 9731729 9748018 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 21 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRPF3 6 36196744 36232790 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 22 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRS3 23 136487887 136493780 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRSK1 19 55282072 55312533 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 20 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRSK2 11 1389899 1462689 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 26 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRWD1 21 39184176 39321559 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 51 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BRWD3 23 80670854 80809688 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 45 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BSCL2 11 62690275 62709845 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BSDC1 1 32365103 32394731 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BSG 19 571277 583493 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BSN 3 49554489 49671545 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 48 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BSND 1 54998193 55011784 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BSPH1 19 47968046 47992170 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 5 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BSPRY 9 113349541 113371233 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BST1 4 15702950 15738313 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 10 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BST2 19 17402939 17405648 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 5 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BSX 11 122977570 122981720 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTAF1 10 91923769 92030325 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 39 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTBD1 15 83016422 83067354 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 9 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTBD10 11 13388001 13463297 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTBD11 12 107318413 107659642 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 23 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTBD16 10 122271306 122338162 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTBD17 17 74356416 74361946 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTBD18 11 57743514 57751781 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTBD19 1 44808482 44815585 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTBD2 19 1985438 2034881 FALSE 591 -0.292096165521122 44 1753671 2129102 0.213873728132233 2 0 0.213873728132233 2 0 375431 2 13 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTBD3 20 11890723 11926609 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTBD6 14 105248490 105251093 FALSE 474 -0.136925231270881 62 104993000 105529597 0.235629703240478 3 NA 0.235629703240478 3 NA 536597 NA 15 7 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTBD7 14 93237550 93333092 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTBD8 1 92080305 92184725 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 28 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTBD9 6 38168451 38640148 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTC 4 74744759 74794686 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 5 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTD 3 15601341 15647640 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTF3 5 73498408 73505635 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTF3L4 1 52056125 52090716 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTG1 12 92140278 92145897 TRUE 418 1.69364628342591 124 91178339 92145727 0.397448435712946 17 NA 0.397448435712946 17 NA 967388 NA 2 18 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTG2 1 203305491 203309602 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTG3 21 17593653 17612947 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTG4 11 111467526 111512354 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTK 23 101349447 101390796 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 26 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTLA 3 112463968 112499561 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTN1A1 6 26501221 26510422 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 10 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTN2A1 6 26457904 26476621 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 14 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTN2A2 6 26383096 26394874 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTN3A1 6 26402237 26415216 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 14 6 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTN3A2 6 26365159 26378320 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 10 2 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTN3A3 6 26440472 26453415 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 12 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTNL2 6 32393963 32407128 FALSE 195 -0.605024030620843 30 32302561 32662190 0.37140042022976 1 0 0.37140042022976 1 0 359629 1 7 11 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTNL3 5 180988845 181006727 FALSE 183 -0.449406845966543 39 180792977 181260799 NA 2 NA NA 2 NA 467822 NA 11 11 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTNL8 5 180899077 180950906 FALSE 183 -0.449406845966543 39 180792977 181260799 NA 2 NA NA 2 NA 467822 NA 11 13 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTNL9 5 181040225 181061523 FALSE 183 -0.449406845966543 39 180792977 181260799 NA 2 NA NA 2 NA 467822 NA 11 15 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BTRC 10 101354033 101557321 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BUB1 2 110637698 110678114 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 27 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BUB1B 15 40161023 40221136 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 24 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BUB1B-PAK6 15 40217428 40276396 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 17 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BUB3 10 123154277 123170467 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BUD13 11 116748170 116772988 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BUD23 7 73683025 73705161 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 19 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BUD31 7 99408641 99419616 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BVES 6 105096822 105137174 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BX276092.9 23 71667542 71671524 FALSE 715 -0.659931446909816 29 71291831 71671196 0.39968910724052 0 NA 0.39968910724052 0 0 379365 0 7 9 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BYSL 6 41921188 41933046 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BZW1 2 200810594 200827338 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 BZW2 7 16646131 16706523 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 11 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf105 10 71711702 71737824 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf113 10 21125763 21146559 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf120 10 122697709 122699822 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 6 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf142 10 44292569 44294649 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf143 10 130020025 130110817 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf53 10 49679651 49710261 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf55 10 73909969 73922777 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 11 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf62 10 97589727 97590934 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf67 10 23201916 23344845 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf71 10 49299193 49327487 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 16 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf82 10 116663696 116670264 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf88 10 122930903 122954403 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf90 10 126424997 126670446 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 17 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf95 10 102449837 102451543 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C10orf99 10 84173738 84185294 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf1 11 111878935 111885975 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf16 11 8920076 8933006 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 8 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf21 11 2295645 2303049 FALSE 341 0.150532842564489 86 2129151 2776033 0.360033220093454 4 NA 0.360033220093454 4 NA 646882 NA 11 6 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf24 11 68261335 68272001 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf40 11 4571423 4577820 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf42 11 6205566 6211132 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf45 11 128899565 128906035 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 3 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf49 11 46936689 47164385 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf52 11 111918032 111926872 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf53 11 111245805 111286401 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf54 11 93741591 93764749 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf58 11 16613132 16756881 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf65 11 108308519 108467531 FALSE 366 0.600098570624829 107 108223106 108368901 0.397448435712946 6 NA 0.397448435712946 6 NA 145795 NA 2 53 5 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf68 11 65916808 65919117 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf71 11 114391443 114400511 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf74 11 36594493 36659290 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf80 11 66744451 66843328 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf86 11 66975277 66977004 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf87 11 109422120 109429114 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf88 11 111514785 111537031 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf91 11 33698261 33700801 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf94 11 45906513 45907282 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf95 11 63759892 63768775 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf96 11 43942505 43944338 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf97 11 94512432 94532123 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C11orf98 11 62662816 62665217 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf10 12 53299686 53307177 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf29 12 88033846 88050160 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf4 12 4487728 4538508 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf40 12 39626167 39908300 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf42 12 103237591 103496010 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf43 12 121000486 121016502 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf45 12 104986310 105074197 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 27 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf49 12 116710185 116738070 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf50 12 87980035 88034037 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf54 12 48482498 48496386 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 7 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf56 12 64264762 64391192 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 15 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf57 12 6942978 6946003 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf60 12 14803572 14906586 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 18 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf65 12 123232916 123257959 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf66 12 64186316 64222296 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf71 12 27081058 27082514 FALSE 395 1.05231732428215 116 26055418 27646129 0.397448435712946 10 NA 0.397448435712946 10 NA 1590711 NA 13 4 2 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf73 12 103950202 103965708 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 2 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf75 12 105235290 105396097 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C12orf76 12 110027028 110073686 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C13orf42 13 51082119 51200252 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 5 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C14orf119 14 23094765 23100462 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C14orf132 14 96039324 96093889 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C14orf177 14 98711613 98717766 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C14orf178 14 77760830 77769742 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 3 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C14orf180 14 104579684 104590515 FALSE 470 -0.28238273283378 51 103746376 104759488 NA 2 NA NA 2 NA 1013112 NA 11 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C14orf28 14 44897295 44907257 FALSE 451 -0.0664108785456086 67 44505506 45130739 0.31995059840763 3 NA 0.31995059840763 3 NA 625233 NA 6 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C14orf39 14 60396469 60515543 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 22 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C14orf93 14 22985908 23010166 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C15orf38-AP3S2 15 89834308 89912882 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C15orf39 15 75195643 75212169 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C15orf40 15 82988441 83011641 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 8 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C15orf41 15 36579611 36810248 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C15orf48 15 45430529 45448761 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C15orf53 15 38628005 39180499 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 3 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C15orf61 15 67521068 67530143 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C15orf62 15 40770080 40772449 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C15orf65 15 55408548 55418764 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf45 16 15434295 15625028 FALSE 519 -0.0068915740419202 77 14482806 15617149 0.252310779181821 4 NA 0.252310779181821 4 NA 1134343 NA 15 27 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf46 16 81053497 81077267 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf54 16 29742463 29746006 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf58 16 31489471 31509309 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf70 16 67109958 67148539 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf71 16 4734272 4749396 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 10 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf72 16 9091648 9121640 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf74 16 85690084 85751129 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf78 16 49373823 49399431 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf86 16 67666816 67668758 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf87 16 46796607 46831411 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf89 16 5044122 5066110 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf90 16 3493484 3495480 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf91 16 1419744 1420800 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf92 16 30023334 30027736 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf95 16 87083562 87317420 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C16orf96 16 4556490 4600714 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 23 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf100 17 6651718 6693202 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf107 17 4899418 4902932 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf113 17 42038232 42050614 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf47 17 58541587 58544368 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf49 17 7014495 7017525 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf50 17 35760897 35765079 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf51 17 21428381 21574517 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf53 17 44141906 44162476 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf58 17 67991101 67996431 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf64 17 60392429 60431421 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf67 17 56791913 56838773 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 5 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf75 17 32324565 32350023 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf78 17 37375986 37392708 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf80 17 73232233 73248947 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf97 17 410327 431062 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 6 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf98 17 38835088 38841455 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C17orf99 17 78146353 78166177 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C18orf21 18 35972083 35979286 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C18orf25 18 46173553 46266991 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C18orf32 18 49477250 49487252 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C18orf54 18 54357917 54385218 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C18orf63 18 74315813 74359187 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 16 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf12 19 29698886 29715789 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 4 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf18 19 57958437 57974534 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf24 19 1275438 1279249 FALSE 587 0.217691882461168 93 1042394 1299919 0.39968910724052 4 1 0.39968910724052 4 1 257525 3 12 4 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf25 19 1461143 1479556 FALSE 589 -0.44786516347233 39 1398963 1609436 NA 2 NA NA 2 NA 210473 NA 14 22 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf33 19 38304161 38305009 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf38 19 10836575 10869790 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf44 19 16496311 16521352 FALSE 629 -0.412926938873791 39 16377140 16841876 NA 2 NA NA 2 NA 464736 NA 12 18 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf47 19 40319536 40348527 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf48 19 50797704 50804929 FALSE 671 0.319009489173821 99 50630099 50948696 0.361681390833996 5 NA 0.361681390833996 5 NA 318597 NA 14 2 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf53 19 13774168 13778462 FALSE 621 -0.225919342368309 57 13135243 13799725 0.158317833115363 3 NA 0.158317833115363 3 NA 664482 NA 8 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf54 19 40740856 40751553 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf57 19 13882348 13906452 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 14 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf66 19 10086122 10093252 FALSE 612 -0.2463765322708 51 9849131 10133617 NA 2 NA NA 2 NA 284486 NA 11 10 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf67 19 14081619 14085875 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf70 19 5678421 5680896 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf71 19 3539154 3544030 FALSE 597 -0.316308503877712 46 3155904 3648696 NA 2 NA NA 2 NA 492792 NA 16 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf73 19 49118397 49119140 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 2 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf81 19 50649445 50659310 FALSE 671 0.319009489173821 99 50630099 50948696 0.361681390833996 5 NA 0.361681390833996 5 NA 318597 NA 14 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C19orf84 19 51388289 51390574 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 3 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1D 2 68041130 68110948 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1GALT1 7 7156934 7248651 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1GALT1C1 23 120625793 120630150 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1GALT1C1L 2 43675151 43676322 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 3 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QA 1 22636506 22639608 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QB 1 22652762 22661538 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QBP 17 5432777 5448830 FALSE 538 -0.524547519785345 34 5395000 5521780 0.312402751065481 1 0 0.312402751065481 1 0 126780 1 7 9 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QC 1 22643630 22648110 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QL1 17 44959693 44968071 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QL2 2 119156243 119158889 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QL3 10 16513743 16522005 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QL4 12 49332411 49337188 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QTNF1 17 79022814 79049788 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QTNF12 1 1242446 1246722 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 9 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QTNF2 5 160347751 160370641 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QTNF3 5 34019448 34043832 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QTNF3-AMACR 5 33987174 34124528 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 15 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QTNF4 11 47589664 47594659 FALSE 346 -0.207050878279221 57 47484529 47631121 0.158317833115363 3 NA 0.158317833115363 3 NA 146592 NA 7 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QTNF5 11 119338939 119340940 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QTNF6 22 37180167 37199385 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QTNF7 4 15339818 15446166 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QTNF8 16 1090005 1096244 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QTNF9 13 24307166 24322535 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1QTNF9B 13 23890525 23902655 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1R 12 7080199 7092607 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1RL 12 7089587 7109273 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 17 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1S 12 6988259 7071032 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf100 1 244352635 244389663 FALSE 44 0.117466813329847 86 243659450 245702541 0.360033220093454 4 NA 0.360033220093454 4 NA 2043091 NA 11 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf105 1 172420688 172468831 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 12 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf109 1 37681570 37692249 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf112 1 169662007 169854080 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 54 9 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf115 1 220689845 220699157 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf116 1 207018521 207032756 FALSE 39 -0.126177318869813 67 206934439 207582013 0.31995059840763 3 NA 0.31995059840763 3 NA 647574 NA 10 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf122 1 37806979 37809454 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf123 1 53214099 53220617 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf127 1 10946471 10982037 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 16 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf131 1 231223763 231241187 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf141 1 67092165 67231853 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf146 1 92217940 92245813 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf158 1 12746215 12763699 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf159 1 1081818 1116361 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 10 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf162 1 111473792 111478512 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf167 1 11761787 11789585 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 25 11 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf174 1 3889125 3900293 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf185 1 51102221 51148086 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf189 1 154199372 154206333 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf194 1 109105951 109113857 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf198 1 230837119 230869589 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf21 1 184387058 184629020 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf210 1 43281883 43285617 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf216 1 35713875 35719472 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf226 1 162366908 162386818 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf35 1 228100726 228105411 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf43 1 154206696 154220637 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf50 1 42767269 42779488 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf52 1 85249953 85259672 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf53 1 197902647 197907367 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf54 1 150268200 150280916 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf56 1 151047740 151051986 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf61 1 156404250 156430701 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf68 1 152719522 152720470 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf74 1 209779208 209784559 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf87 1 59987269 60073770 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C1orf94 1 34166883 34219131 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2 6 31897785 31945672 FALSE 192 0.00493836391948355 77 31761776 31933922 0.252310779181821 4 NA 0.252310779181821 4 NA 172146 NA 16 25 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C20orf141 20 2814987 2815833 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C20orf144 20 33662284 33665619 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C20orf173 20 35523186 35529652 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C20orf194 20 3249305 3407625 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 37 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C20orf202 20 1203454 1208274 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C20orf203 20 32631652 32673941 FALSE 689 0.316430543791893 99 32330098 32885548 0.361681390833996 5 NA 0.361681390833996 5 NA 555450 NA 9 3 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C20orf204 20 64034344 64039962 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C20orf27 20 3753508 3768387 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C20orf85 20 58150904 58161150 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C20orf96 20 270863 290778 FALSE 684 -0.601566453598946 32 87678 284118 0.364170154096734 1 0 0.364170154096734 1 0 196440 1 7 11 3 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C21orf58 21 46300181 46323875 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C21orf62 21 32793564 32813743 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C21orf91 21 17788967 17819386 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C22orf15 22 23763021 23765861 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C22orf23 22 37943050 37953669 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C22orf31 22 29058672 29061844 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C22orf39 22 19351368 19448232 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 34 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C22orf42 22 32149006 32159322 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C22orf46 22 41688939 41698136 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2CD2 21 41885112 41953890 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 16 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2CD2L 11 119102198 119118544 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2CD3 11 74012714 74171210 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 45 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2CD4A 15 62066977 62070917 FALSE 487 0.296385928010631 99 61991730 63677860 0.361681390833996 5 NA 0.361681390833996 5 NA 1686130 NA 13 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2CD4B 15 62163535 62165283 FALSE 487 0.296385928010631 99 61991730 63677860 0.361681390833996 5 NA 0.361681390833996 5 NA 1686130 NA 13 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2CD4C 19 405438 409170 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2CD4D 1 151837819 151840557 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2CD5 12 22448583 22544546 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 29 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2CD6 2 201487425 201619178 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 31 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf15 2 99141485 99151487 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf16 2 27537386 27582721 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 24 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf40 2 106063246 106078159 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 4 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf42 2 70149880 70248615 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf49 2 105337359 105349211 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf50 2 11133053 11146790 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf66 2 196805002 196810276 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 2 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf68 2 85606654 85612066 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf69 2 199911256 199955935 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf70 2 26562582 26579532 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf72 2 231037490 231049719 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf73 2 54330034 54383742 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf74 2 61145068 61164829 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf76 2 119302225 119366828 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf78 2 73784189 73817147 FALSE 65 -0.681372041727781 29 73385994 73862307 0.39968910724052 1 0 0.39968910724052 1 0 476313 1 6 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf80 2 208165343 208190073 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 8 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf81 2 74414176 74421591 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf83 2 227610090 227648606 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf88 2 189879609 190203484 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf91 2 41935368 41956806 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C2orf92 2 97664217 97703064 FALSE 76 -0.26669136290751 51 97549412 97702686 NA 2 NA NA 2 NA 153274 NA 4 8 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3 19 6677704 6730562 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 43 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3AR1 12 8058302 8066471 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf14 3 62318973 62336213 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf18 3 50558025 50571027 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf20 3 14675099 14773034 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf22 3 126526999 126558965 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf30 3 119146150 119160042 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 8 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf33 3 155762617 155806351 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 6 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf38 3 88149743 88168729 FALSE 121 -0.0206780540273211 77 75738958 89482041 0.252310779181821 4 NA 0.252310779181821 4 NA 13743083 NA 14 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf49 3 63819362 63848636 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf52 3 112086335 112131004 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf56 3 127193131 127198185 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf58 3 143971798 144048719 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf62 3 49268602 49277909 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf67 3 58717365 59050084 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf70 3 185078050 185153014 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf80 3 160225496 160228213 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf84 3 49177632 49191858 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C3orf85 3 109118252 109150514 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4A 6 31982024 32002681 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 10 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4B 6 32014795 32035418 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 9 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4BPA 1 207104262 207144972 FALSE 39 -0.126177318869813 67 206934439 207582013 0.31995059840763 3 NA 0.31995059840763 3 NA 647574 NA 10 11 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4BPB 1 207088842 207099993 FALSE 39 -0.126177318869813 67 206934439 207582013 0.31995059840763 3 NA 0.31995059840763 3 NA 647574 NA 10 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4orf17 4 99511004 99542303 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4orf19 4 37453941 37623495 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4orf3 4 119296419 119304445 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4orf33 4 129093317 129116640 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4orf36 4 86876205 86892422 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4orf45 4 158893134 159038760 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4orf46 4 158666679 158672255 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4orf47 4 185426249 185449826 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4orf48 4 2041993 2043970 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4orf50 4 5897373 6200555 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 28 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4orf51 4 145680115 145771032 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C4orf54 4 99636529 99654648 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 20 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5 9 120952335 121050276 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 41 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5AR1 19 47290023 47322066 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 6 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5AR2 19 47332147 47347327 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 4 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf15 5 133955502 133968787 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf22 5 31532266 31555058 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf24 5 134845680 134859737 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf30 5 103258702 103278660 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf34 5 43486701 43515145 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 15 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf38 5 2752131 2755397 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf46 5 147880726 147906538 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf47 5 173973779 174006140 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf49 5 7830378 7851490 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf51 5 41904188 41921636 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf52 5 157671553 157680143 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf58 5 170232447 170252575 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf60 5 179641544 179645046 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf63 5 127042558 127073492 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C5orf67 5 56511567 56606232 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6 5 41142234 41261438 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf10 6 32288526 32371912 FALSE 194 0.0130704912847526 77 32194911 32300724 0.252310779181821 4 NA 0.252310779181821 4 NA 105813 NA 3 30 12 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf106 6 34587288 34696859 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf118 6 165279664 165309607 FALSE 228 -0.0936034159017556 66 165280135 167136462 0.330876988437597 3 0 0.330876988437597 3 0 1856327 3 12 12 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf120 6 169702190 169704856 FALSE 230 -0.0331467567986683 71 168062029 170285618 0.212208033369562 4 0 0.212208033369562 4 0 2223589 4 11 4 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf132 6 42101118 42142619 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf136 6 30647039 30653210 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf141 6 49550646 49561907 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf15 6 31111223 31112559 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 5 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf163 6 87344849 87365463 FALSE 201 -0.221189436484543 57 87265553 88929289 0.158317833115363 3 NA 0.158317833115363 3 NA 1663736 NA 12 6 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf201 6 4079206 4130951 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 12 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf203 6 107028213 107051342 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf222 6 36315757 36336885 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 14 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf223 6 44000580 44005958 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf226 6 42890265 42890816 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf47 6 31658298 31660772 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf48 6 31834608 31839766 FALSE 192 0.00493836391948355 77 31761776 31933922 0.252310779181821 4 NA 0.252310779181821 4 NA 172146 NA 16 2 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf52 6 10671418 10694797 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf58 6 127519455 127591817 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf62 6 24704861 24720836 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C6orf89 6 36871870 36928964 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 9 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C7 5 40909252 40982939 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 18 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C7orf25 7 42908726 42912305 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C7orf26 7 6590017 6608726 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C7orf31 7 25134697 25180356 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 12 4 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C7orf33 7 148590565 148615860 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C7orf43 7 100154420 100158715 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C7orf50 7 996986 1138260 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 16 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C7orf55-LUC7L2 7 139341360 139422599 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C7orf57 7 48035511 48061304 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C7orf61 7 100456615 100464271 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C7orf77 7 124777292 124790810 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8A 1 56854806 56918221 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8B 1 56929210 56966140 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8G 9 136945185 136946975 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 6 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8orf33 8 145052378 145066685 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8orf34 8 68330722 68819022 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8orf37 8 95244919 95269201 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8orf44 8 66667615 66685564 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8orf48 8 13566843 13568287 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8orf58 8 22599601 22604150 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8orf59 8 85214076 85220421 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8orf74 8 10672637 10700593 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8orf76 8 123219957 123241398 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8orf82 8 144525733 144529132 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8orf86 8 38510834 38560939 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8orf88 8 90958637 90985257 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C8orf89 8 73241329 73259502 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9 5 39284262 39424868 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 31 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf116 9 135495181 135501734 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf129 9 93318199 93346414 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf131 9 35041095 35045991 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf135 9 69820793 69906232 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 7 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf152 9 110190048 110208189 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf153 9 86220265 86259657 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf16 9 128160260 128163928 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf24 9 34379019 34397832 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf3 9 94726701 95087218 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 19 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf40 9 74946581 74952886 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf43 9 113410054 113429684 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf50 9 129612225 129620776 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 8 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf57 9 72051376 72072721 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf64 9 83938311 83956986 FALSE 293 -0.328784635523128 44 81990823 84670815 0.213873728132233 2 0 0.213873728132233 2 0 2679992 2 12 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf66 9 212824 215893 FALSE 279 -0.548195418860268 34 14889 214478 0.312402751065481 1 0 0.312402751065481 1 0 199589 1 4 4 0 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf72 9 27546545 27573866 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf78 9 129827290 129835863 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 10 3 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf84 9 111686173 111795008 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 31 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf85 9 71911510 71986054 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 C9orf92 9 16203935 16410990 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA1 8 85327608 85379014 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA10 17 51630313 52160017 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA11 19 48637942 48646312 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA12 15 63321378 63382161 FALSE 487 0.296385928010631 99 61991730 63677860 0.361681390833996 5 NA 0.361681390833996 5 NA 1686130 NA 13 11 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA13 8 85220587 85284073 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA14 1 150257159 150265078 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA2 8 85463852 85481493 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA3 8 85373436 85449040 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA4 17 60149936 60170899 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 8 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA5A 16 87881546 87936580 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA5B 23 15688830 15788409 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA6 1 8945867 8975092 FALSE 7 0.18541391362799 90 8324498 9691530 0.275334878251284 5 NA 0.275334878251284 5 NA 1367032 NA 12 10 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA7 16 66844379 66854153 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA8 8 60187347 60281412 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CA9 9 35673856 35681159 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAAP1 9 26840685 26892804 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAB39 2 230712845 230821075 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAB39L 13 49308650 49444126 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CABCOCO1 10 61662961 61766766 FALSE 324 0.504242099052201 104 60086767 62198353 0.397448435712946 6 NA 0.397448435712946 6 NA 2111586 NA 7 6 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CABIN1 22 24011192 24178628 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 42 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CABLES1 18 23134564 23260467 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 14 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CABLES2 20 62388632 62407285 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 10 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CABP1 12 120640552 120667324 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CABP2 11 67518912 67524517 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CABP4 11 67452406 67460313 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CABP5 19 48029953 48044053 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 6 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CABP7 22 29720084 29731839 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 6 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CABS1 4 70334966 70337116 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CABYR 18 24138956 24161603 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 12 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACFD1 9 133459965 133470848 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACHD1 1 64470792 64693058 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 27 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNA1A 19 13206442 13633025 FALSE 621 -0.225919342368309 57 13135243 13799725 0.158317833115363 3 NA 0.158317833115363 3 NA 664482 NA 8 60 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNA1B 9 137877789 138124624 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 55 2 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNA1C 12 1970786 2697950 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 62 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNA1D 3 53328963 53813733 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 59 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNA1E 1 181317690 181808084 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 54 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNA1F 23 49205063 49233371 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 52 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNA1G 17 50561068 50627474 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 49 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNA1H 16 1153121 1221772 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 47 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNA1I 22 39570753 39689737 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 47 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNA1S 1 201039512 201112566 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 46 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNA2D1 7 81946444 82443798 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 40 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNA2D2 3 50362799 50504244 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 36 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNA2D3 3 54122547 55074557 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 44 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNA2D4 12 1791957 1918836 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 44 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNB1 17 39173456 39197703 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNB2 10 18140677 18543557 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNB3 12 48813794 48828941 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNB4 2 151832768 152099475 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNG1 17 67044590 67056797 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNG2 22 36563921 36703558 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNG3 16 24255553 24362801 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNG4 17 66964910 67033398 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNG5 17 66835117 66885486 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNG6 19 53992288 54012669 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNG7 19 53909335 53943941 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACNG8 19 53963040 53990215 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 7 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACTIN 19 3610641 3626815 FALSE 597 -0.316308503877712 46 3155904 3648696 NA 2 NA NA 2 NA 492792 NA 16 15 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACUL1 10 118674167 118755249 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CACYBP 1 174999163 175011715 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAD 2 27217390 27243943 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 48 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CADM1 11 115169218 115504957 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CADM2 3 84958981 86074429 FALSE 121 -0.0206780540273211 77 75738958 89482041 0.252310779181821 4 NA 0.252310779181821 4 NA 13743083 NA 14 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CADM3 1 159171609 159203313 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CADM4 19 43622368 43639839 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CADPS 3 62398346 62875389 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 33 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CADPS2 7 122318425 122886759 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 44 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAGE1 6 7326656 7389743 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 18 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALB1 8 90058608 90095475 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALB2 16 71358713 71390438 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 11 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALCA 11 14966668 14972354 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALCB 11 14904997 15082342 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALCOCO1 12 53708517 53727745 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALCOCO2 17 48830988 48866522 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 14 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALCR 7 93424487 93574730 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALCRL 2 187343129 187448460 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALD1 7 134744252 134970728 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 19 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALHM1 10 103453387 103458888 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALHM2 10 103446786 103452402 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALHM3 10 103472804 103479240 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALHM4 6 116529013 116558868 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALHM5 6 116511646 116524792 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALHM6 6 116461370 116463779 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 5 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALM1 14 90396502 90408261 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALM2 2 47160082 47176601 FALSE 59 -0.32871660107588 46 46484402 47170815 NA 2 NA NA 2 NA 686413 NA 11 7 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALM3 19 46601074 46610793 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALML3 10 5524009 5526771 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALML4 15 68190705 68206110 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 5 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALML5 10 5498697 5499555 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALML6 1 1914827 1917296 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALN1 7 71779491 72447151 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALR 19 12938578 12944489 FALSE 620 0.246971120530574 97 12876151 13116391 0.39968910724052 4 NA 0.39968910724052 4 NA 240240 NA 12 10 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALR3 19 16479057 16496192 FALSE 629 -0.412926938873791 39 16377140 16841876 NA 2 NA NA 2 NA 464736 NA 12 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALU 7 128739292 128771807 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CALY 10 133324072 133336935 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 5 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMK1 3 9757342 9769992 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 13 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMK1D 10 12349482 12835545 FALSE 314 0.0797787605968275 82 10796933 12825599 0.298111653356898 4 NA 0.298111653356898 4 NA 2028666 NA 10 11 1 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMK1G 1 209583717 209613938 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMK2A 5 150219491 150290291 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMK2B 7 44217150 44334577 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 24 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMK2D 4 113451032 113761927 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 25 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMK2G 10 73812501 73874591 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 24 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMK2N1 1 20482391 20486220 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMK2N2 3 184259213 184261463 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMK4 5 111223653 111494886 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMKK1 17 3860315 3894891 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMKK2 12 121237691 121298308 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMKMT 2 44361950 44772592 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 11 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMKV 3 49857988 49870222 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMLG 5 134738501 134752160 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMP 3 48223347 48225491 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMSAP1 9 135808487 135907228 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 28 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMSAP2 1 200739558 200860704 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMSAP3 19 7595902 7618304 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 26 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMTA1 1 6785324 7769706 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 38 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAMTA2 17 4967992 4987652 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 28 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAND1 12 67269281 67319951 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 23 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAND2 3 12796472 12871916 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 25 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CANT1 17 78991717 79009867 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 6 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CANX 5 179678628 179730925 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAP1 1 40040233 40072649 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAP2 6 17393216 17557792 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPG 2 85394748 85418432 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPN1 11 65180566 65212006 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPN10 2 240586716 240617705 FALSE 109 -0.204551948627658 52 240042747 240874079 0.261858812358373 3 1 0.261858812358373 3 1 831332 2 13 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPN11 6 44158811 44184402 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 23 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPN12 19 38730187 38769904 FALSE 646 -0.00229584309761491 77 38714572 38869416 0.252310779181821 4 NA 0.252310779181821 4 NA 154844 NA 9 20 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPN13 2 30722771 30820542 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 22 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPN14 2 31173056 31233858 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 22 6 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPN15 16 527717 554636 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 19 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPN2 1 223701593 223776018 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPN3 15 42359500 42412318 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 26 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPN5 11 77066941 77126155 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPN6 23 111245103 111270523 FALSE 718 0.40922507882028 103 110944546 111246763 0.397448435712946 2 NA 0.397448435712946 2 NA 302217 NA 2 14 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPN7 3 15206152 15252918 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPN8 1 223538007 223665734 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPN9 1 230747384 230802003 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 21 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPNS1 19 36139575 36150353 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 10 0 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPNS2 16 55566672 55567687 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPRIN1 11 34051683 34101156 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPRIN2 12 30709552 30754951 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 23 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPS 19 5911707 5915877 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPS2 12 75275979 75390928 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 27 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPSL 5 35904295 35938779 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 5 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPZA1 1 112619173 112671619 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPZA2 7 116811070 116922049 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPZA3 12 18738101 18739187 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 4 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAPZB 1 19338776 19485539 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARD10 22 37490362 37519542 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARD11 7 2906141 3043945 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 29 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARD14 17 80169992 80209331 FALSE 570 -0.251638265228374 50 80089734 80476396 1 2 1 1 2 1 386662 1 9 24 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARD16 11 105041326 105101431 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARD17 11 105092469 105101431 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARD18 11 105137721 105531697 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARD19 9 93096218 93113283 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARD6 5 40841184 40860175 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARD8 19 48180770 48255946 FALSE 665 0.584322352220344 105 48122950 48211862 0.397448435712946 6 NA 0.397448435712946 6 NA 88912 NA 3 24 3 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARD9 9 136361903 136373681 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 18 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARF 2 202912214 202987063 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARHSP1 16 8852942 8869012 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARM1 19 10871513 10923070 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARMIL1 6 25279078 25620530 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 38 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARMIL2 16 67644919 67657569 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 33 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARMIL3 14 24052000 24069728 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 39 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARNMT1 9 74981020 75028423 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARNS1 11 67414968 67425607 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARS 11 3000922 3057613 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 24 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARS2 13 110641412 110713603 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CARTPT 5 71719163 71721048 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASC1 12 25108420 25195162 FALSE 393 2.14911654701118 126 23740959 25194896 0.397448435712946 25 NA 0.397448435712946 25 NA 1453937 NA 4 18 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASC10 10 21492658 21497262 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASC3 17 40140318 40172183 FALSE 551 -0.178633749129299 62 39868328 40193677 0.235629703240478 3 NA 0.235629703240478 3 NA 325349 NA 13 16 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASC4 15 44288729 44415758 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASD1 7 94509219 94557019 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 21 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASK 23 41514934 41923645 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 37 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASKIN1 16 2177180 2196525 FALSE 510 0.594834269358152 105 2155798 2179262 0.397448435712946 6 NA 0.397448435712946 6 NA 23464 NA 2 31 0 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASKIN2 17 75500261 75515583 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 24 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASP1 11 105025443 105035250 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASP10 2 201182881 201229406 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASP14 19 15049384 15058293 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASP2 7 143288215 143307696 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASP3 4 184627696 184649509 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASP4 11 104942866 104969436 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASP5 11 104994235 105023168 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASP6 4 109688622 109703583 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASP7 10 113679162 113730907 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASP8 2 201233443 201287711 TRUE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 20 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASP8AP2 6 89829894 89874436 FALSE 203 -0.328974867549418 46 89713302 90586867 NA 2 NA NA 2 NA 873565 NA 5 29 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASP9 1 15490832 15526534 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASQ1 1 160190556 160201886 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASQ2 1 115700007 115768781 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASR 3 122183683 122291629 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASS4 20 56412112 56460387 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAST 5 96525267 96779595 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 34 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASTOR1 22 30285117 30289627 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASTOR3 7 100200653 100272232 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 26 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CASZ1 1 10636604 10796650 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 30 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAT 11 34438925 34472062 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CATIP 2 218356856 218368099 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CATSPER1 11 66016752 66026517 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 16 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CATSPER2 15 43628503 43668118 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 14 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CATSPER3 5 134967906 135011707 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CATSPER4 1 26190561 26202968 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CATSPERB 14 91580696 91780707 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CATSPERD 19 5720677 5778734 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 23 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CATSPERE 1 244454377 244641177 FALSE 44 0.117466813329847 86 243659450 245702541 0.360033220093454 4 NA 0.360033220093454 4 NA 2043091 NA 11 25 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CATSPERG 19 38335775 38370943 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 29 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CATSPERZ 11 64300391 64304770 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAV1 7 116524785 116561184 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAV2 7 116287380 116508541 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAV3 3 8733800 8841808 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 8 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAVIN1 17 42402452 42423517 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAVIN2 2 191834302 191847255 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAVIN3 11 6318946 6320647 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CAVIN4 9 100578079 100587906 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBARP 19 1228287 1238027 FALSE 587 0.217691882461168 93 1042394 1299919 0.39968910724052 4 1 0.39968910724052 4 1 257525 3 12 11 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBFA2T2 20 33490075 33650036 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBFA2T3 16 88874858 88977204 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 21 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBFB 16 67029116 67101058 TRUE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBL 11 119206276 119313926 TRUE 370 0.581044272705533 105 119206377 119308181 0.397448435712946 6 NA 0.397448435712946 6 NA 101804 NA 1 61 0 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBLB 3 105655461 105869552 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 23 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBLC 19 44777869 44800652 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBLL1 7 107743697 107761667 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBLL2 23 22272943 22274461 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBLN1 16 49277917 49281831 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBLN2 18 72536680 72638521 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBLN3 14 24426532 24430954 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBLN4 20 55997440 56005472 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBR1 21 36069941 36073166 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBR3 21 36134912 36146566 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBR4 4 168863770 169010275 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBS 21 43053191 43076943 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBWD1 9 121038 179147 FALSE 279 -0.548195418860268 34 14889 214478 0.312402751065481 1 0 0.312402751065481 1 0 199589 1 4 15 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBWD2 2 113437691 113496189 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 16 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBWD3 9 68232003 68300015 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 8 1 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBWD5 9 65668805 65734041 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBWD6 9 41131306 41199261 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 8 2 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBX1 17 48070052 48101521 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBX2 17 79778132 79787983 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBX3 7 26201162 26213356 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 5 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBX4 17 79833156 79839429 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 11 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBX5 12 54230940 54280133 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBX6 22 38861450 38872314 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBX7 22 39120167 39152674 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBX8 17 79792132 79801683 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBY1 22 38656636 38673854 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CBY3 5 179678583 179680974 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CC2D1A 19 13906201 13930879 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 25 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CC2D1B 1 52345723 52366193 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CC2D2A 4 15469865 15601557 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 39 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CC2D2B 10 95907603 96032684 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 35 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCAR1 10 68721012 68792377 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCAR2 8 22604632 22621514 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 20 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCBE1 18 59430939 59697662 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC102A 16 57512178 57536599 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC102B 18 68715209 69055189 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC103 17 44899142 44905390 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC105 19 15010744 15023269 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 10 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC106 19 55641062 55653161 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC107 9 35658290 35661511 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC110 4 185445182 185471759 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 16 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC112 5 115267188 115296831 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC113 16 58231157 58283836 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC114 19 48296457 48321894 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 14 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC115 2 130338241 130342349 FALSE 82 -0.261392512927958 50 127719285 130373216 1 2 1 1 2 1 2653931 1 15 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC116 22 21632716 21637327 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC117 22 28772674 28789301 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC12 3 46921726 46982010 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 8 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC120 23 49053572 49069857 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 14 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC121 2 27625639 27629012 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC122 13 43823909 43879727 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC124 19 17933016 17943991 FALSE 633 -0.0653644831439953 67 17843737 18149705 0.31995059840763 3 NA 0.31995059840763 3 NA 305968 NA 8 5 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC125 5 69280175 69332809 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC126 7 23597379 23644708 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 3 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC127 5 196871 218215 FALSE 159 -0.112173854210592 67 92307 223843 0.31995059840763 3 NA 0.31995059840763 3 NA 131536 NA 4 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC13 3 42708269 42773253 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 18 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC130 19 13731760 13763296 FALSE 621 -0.225919342368309 57 13135243 13799725 0.158317833115363 3 NA 0.158317833115363 3 NA 664482 NA 8 10 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC134 22 41800679 41826299 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC136 7 128790757 128822132 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC137 17 81666364 81673904 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC138 2 108786757 108885477 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 16 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC14 3 123897305 123961408 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 18 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC140 2 222298147 222305217 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC141 2 178829757 179050086 FALSE 92 -0.0754842242449962 67 178792141 178888518 0.31995059840763 3 NA 0.31995059840763 3 NA 96377 NA 2 27 4 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC142 2 74471986 74483408 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 18 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC144A 17 16689537 16777881 FALSE 544 -0.432476680468626 39 16223200 17212252 NA 2 NA NA 2 NA 989052 NA 14 25 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC144NL 17 20836447 20896140 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC146 7 77122434 77329533 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 38 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC148 2 158171081 158456753 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 15 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC149 4 24806117 24980204 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC15 11 124954121 125041489 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 19 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC150 2 196639554 196763490 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 29 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC151 19 11420604 11435782 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC152 5 42756801 42802360 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC153 11 119189638 119196769 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC154 16 1434383 1444556 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 18 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC155 19 49388218 49417994 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC157 22 30356635 30378658 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC158 4 76312997 76421868 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 26 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC159 19 11344684 11354944 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC160 23 134237047 134246207 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC163 1 45493866 45500079 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC166 8 143706694 143708109 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC167 6 37482920 37499922 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC168 13 102729369 102759070 FALSE 440 -0.576133065842435 32 102637150 102839818 0.364170154096734 1 0 0.364170154096734 1 0 202668 1 8 83 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC169 13 36222008 36297840 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 9 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC169-SOHLH2 13 36168794 36297842 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 21 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC17 1 45620044 45624057 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC170 6 151494030 151621193 FALSE 223 0.236892508535766 96 150395481 152208217 0.39968910724052 4 1 0.39968910724052 4 1 1812736 3 10 15 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC171 9 15553086 16061663 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC172 10 116324428 116380029 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC173 2 169645425 169694433 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 10 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC174 3 14651746 14672659 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC175 14 59504539 59576831 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 20 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC177 14 69569816 69574837 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 7 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC178 18 32937402 33441101 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 23 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC179 11 22846931 22860426 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC18 1 93179919 93278730 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 32 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC180 9 97307304 97378524 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 39 6 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC181 1 169394870 169460669 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC182 17 57744481 57745312 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 2 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC183 9 136796350 136807741 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 14 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC184 12 48183584 48185926 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC185 1 223393417 223395470 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC186 10 114120862 114174232 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC188 22 20148427 20151065 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 5 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC189 16 30757423 30762710 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC190 1 162824458 162868815 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC191 3 113964137 114056613 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC192 5 127703389 127941634 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 8 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC196 14 66411704 66498677 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 10 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC197 14 93987225 94008863 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC198 14 57469301 57493867 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 9 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC200 17 43216941 43305397 FALSE 558 -0.437962745946443 39 43180803 43527818 NA 2 NA NA 2 NA 347015 NA 5 2 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC22 23 49235467 49250526 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 17 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC24 1 43991359 43996528 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC25 8 27733311 27772653 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC27 1 3746460 3771645 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC28A 6 138773509 138793319 FALSE 220 0.0543375783167098 82 138298662 142443515 0.298111653356898 4 NA 0.298111653356898 4 NA 4144853 NA 16 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC28B 1 32200386 32205387 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC3 10 12896625 13099652 FALSE 315 0.228244116357697 94 12828838 14820149 0.39968910724052 4 NA 0.39968910724052 4 NA 1991311 NA 13 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC30 1 42463330 42654664 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC32 15 40528683 40565057 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC33 15 74202705 74336472 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 24 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC34 11 27330827 27363868 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC36 3 49198428 49258104 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC38 12 95867048 95942974 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 15 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC39 3 180602858 180870933 FALSE 128 0.146934569885818 86 179242975 181712000 0.360033220093454 4 NA 0.360033220093454 4 NA 2469025 NA 14 34 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC40 17 80036632 80100613 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 25 4 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC42 17 8729934 8745219 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC43 17 44673069 44689779 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC47 17 63745250 63776351 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC50 3 191329077 191398670 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 14 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC51 3 48432164 48440456 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC54 3 107377194 107378637 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC57 17 82101460 82212830 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 19 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC58 3 122359591 122383231 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC59 12 82223681 82358805 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC6 10 59788763 59906656 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC60 12 119334712 119541047 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC61 19 45995461 46021318 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 16 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC62 12 122774327 122827528 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC63 12 110846769 110907535 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC65 12 48904110 48931840 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC66 3 56557161 56621818 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 25 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC68 18 54901509 54959508 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC69 5 151181052 151224145 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC7 10 32446140 32882874 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 44 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC70 13 51861981 51866232 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC71 3 49162535 49166321 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC71L 7 106656765 106660996 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC73 11 32602246 32794658 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 24 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC74A 2 131527675 131533666 FALSE 84 -0.292186070013859 45 130656603 132790182 1 2 1 1 2 1 2133579 1 16 8 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC74B 2 130139287 130145134 FALSE 82 -0.261392512927958 50 127719285 130373216 1 2 1 1 2 1 2653931 1 15 8 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC77 12 389273 442645 FALSE 375 0.00440437382068143 77 66864 894588 0.252310779181821 4 NA 0.252310779181821 4 NA 827724 NA 8 11 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC78 16 722582 726954 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 12 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC8 19 46410329 46413662 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC80 3 112596794 112649530 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC81 11 86374736 86423109 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC82 11 96352769 96389956 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC83 11 85855101 85920021 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC84 11 118998142 119015791 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC85A 2 56184123 56386173 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 10 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC85B 11 65890112 65891635 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC85C 14 99500180 99604026 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC86 11 60842071 60851081 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC87 11 66590176 66593083 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC88A 2 55287842 55419895 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 38 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC88B 11 64340223 64357534 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 32 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC88C 14 91271323 91417844 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 40 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC89 11 85684866 85686277 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC9 19 47255980 47273701 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 13 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC90B 11 83259097 83286407 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC91 12 28133249 28581511 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC92 12 123918660 123972831 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC93 2 117915478 118014133 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 24 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC96 4 7040849 7042939 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC97 19 41310189 41324883 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCDC9B 15 40331452 40340967 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 12 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCER1 12 90905622 90955176 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCER2 19 38908980 38912158 FALSE 647 -0.439700824472697 39 38869641 39110047 NA 2 NA NA 2 NA 240406 NA 10 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCHCR1 6 31142439 31158238 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 19 9 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCIN 9 36169394 36171334 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 7 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCK 3 42257825 42266207 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCKAR 4 26481400 26490462 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCKBR 11 6259736 6272127 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL1 17 34360328 34363231 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL11 17 34285668 34288334 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL13 17 34356452 34358610 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL14 17 35983291 35987004 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL15 17 35996440 36002038 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL15-CCL14 17 35983656 36001621 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL16 17 35976493 35981496 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL17 16 57404767 57416062 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 3 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL18 17 36064280 36072032 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL19 9 34689567 34691277 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL2 17 34255218 34257203 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL20 2 227805739 227817564 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL21 9 34709005 34710124 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 3 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL22 16 57358772 57366190 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL23 17 36013056 36017968 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL24 7 75811665 75823356 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL25 19 8052767 8062650 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL26 7 75769533 75789896 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL27 9 34661880 34664048 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 3 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL28 5 43376645 43412391 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL3 17 36088256 36090169 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL3L1 17 36194869 36196758 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL4 17 36103590 36105621 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL4L2 17 36210924 36212878 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL5 17 35871491 35880793 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL7 17 34270221 34272242 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCL8 17 34319036 34321402 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCM2 7 44999475 45076469 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCM2L 20 32010450 32032180 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNA1 13 36431520 36442882 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNA2 4 121816444 121823933 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNB1 5 69167010 69178245 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 9 0 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNB1IP1 14 20311368 20333312 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNB2 15 59105078 59125045 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNB3 23 50202713 50351910 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 22 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNC 6 99542380 99568973 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCND1 11 69641087 69654474 FALSE 356 0.582187674739794 105 69641403 70149798 0.397448435712946 6 NA 0.397448435712946 6 NA 508395 NA 6 19 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCND2 12 4273772 4305350 FALSE 378 0.86368839094413 113 4269828 4445792 0.397448435712946 8 NA 0.397448435712946 8 NA 175964 NA 5 27 3 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCND3 6 41934933 42050357 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNDBP1 15 43185118 43197176 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNE1 19 29811898 29824308 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 14 2 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNE2 8 94879770 94896678 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNF 16 2429394 2458854 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNG1 5 163437569 163446151 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNG2 4 77157151 77433388 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNH 5 87318416 87413019 FALSE 171 0.215918464504023 94 84137275 90525167 0.39968910724052 4 NA 0.39968910724052 4 NA 6387892 NA 10 45 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNI 4 77047158 77076005 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNI2 5 132747445 132754403 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNJ 10 96043394 96060870 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNJL 5 160249106 160345396 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNK 14 99481169 99535044 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNL1 3 157146508 157160760 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 13 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNL2 1 1385711 1399328 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 15 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNO 5 55231152 55233680 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNQ 23 153587919 153600045 TRUE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNT1 12 48688458 48716998 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNT2 2 134918235 134959342 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNY 10 35247025 35572669 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCNYL1 2 207711540 207761839 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCP110 16 19523811 19553408 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 20 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCPG1 15 55340032 55408510 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCR1 3 46201709 46208396 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCR10 17 42678889 42683917 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCR2 3 46353734 46360928 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCR3 3 46163604 46266706 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCR4 3 32951574 32956349 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCR5 3 46370854 46376206 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCR6 6 167111807 167139696 FALSE 228 -0.0936034159017556 66 165280135 167136462 0.330876988437597 3 0 0.330876988437597 3 0 1856327 3 12 6 1 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCR7 17 40553769 40565472 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCR8 3 39329706 39333511 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCR9 3 45886504 45903177 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCRL2 3 46407163 46412997 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCS 11 66592821 66606019 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCSAP 1 229321005 229343294 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCSER1 4 90127535 91601913 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 17 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCSER2 10 84328558 84518521 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCT2 12 69585334 69601570 FALSE 415 0.0296903115421813 74 69585546 71157651 0.246063395031215 4 2 0.246063395031215 4 2 1572105 2 11 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCT3 1 156308968 156367873 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCT4 2 61868089 61888804 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCT5 5 10249921 10266412 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCT6A 7 56051630 56063989 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCT6B 17 34927859 34981078 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 19 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCT7 2 73233420 73253021 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCT8 21 29055805 29073797 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCT8L2 22 16590751 16592810 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCZ1 7 5898725 5926550 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 15 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CCZ1B 7 6794134 6826770 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD101 1 117001750 117036476 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD109 6 73695785 73828316 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 36 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD14 5 140631728 140633701 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD151 11 832843 839831 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD160 1 145719471 145739288 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD163 12 7470813 7503893 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 23 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD163L1 12 7346685 7479897 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 31 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD164 6 109366514 109382812 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD164L2 1 27379176 27383380 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD177 19 43353659 43363172 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 10 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD180 5 67179613 67196799 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD19 16 28931939 28939346 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD1A 1 158254137 158258269 FALSE 32 -0.643700144922936 29 158181711 158618068 0.39968910724052 1 0 0.39968910724052 1 0 436357 1 14 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD1B 1 158327951 158331531 FALSE 32 -0.643700144922936 29 158181711 158618068 0.39968910724052 1 0 0.39968910724052 1 0 436357 1 14 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD1C 1 158289786 158293630 FALSE 32 -0.643700144922936 29 158181711 158618068 0.39968910724052 1 0 0.39968910724052 1 0 436357 1 14 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD1D 1 158179947 158184896 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 9 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD1E 1 158353696 158357553 FALSE 32 -0.643700144922936 29 158181711 158618068 0.39968910724052 1 0 0.39968910724052 1 0 436357 1 14 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD2 1 116754385 116769228 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD200 3 112332347 112362812 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD200R1 3 112921209 112975122 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD200R1L 3 112815709 112846856 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD207 2 70830214 70835822 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD209 19 7739994 7747564 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD22 19 35319261 35347355 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 17 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD226 18 69831158 69961803 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD244 1 160830160 160862855 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD247 1 167430640 167518610 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD248 11 66314487 66317044 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD27 12 6444867 6451718 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD274 9 5450503 5470566 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 24 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD276 15 73683966 73714518 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 21 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD28 2 203706475 203738912 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD2AP 6 47477789 47627263 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD2BP2 16 30350766 30355361 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD300A 17 74466399 74484796 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD300C 17 74541108 74546143 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD300E 17 74609887 74623738 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD300LB 17 74521174 74531474 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 5 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD300LD 17 74579365 74592283 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD300LF 17 74694311 74712978 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD300LG 17 43847148 43863629 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD302 2 159768630 159798255 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD320 19 8302127 8308356 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD33 19 51225064 51243860 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 9 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD34 1 207880972 207911402 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD36 7 80369575 80679277 FALSE 236 0.496193817902199 104 78017165 81770105 0.397448435712946 6 NA 0.397448435712946 6 NA 3752940 NA 6 20 2 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD37 19 49335171 49343335 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD38 4 15778275 15853230 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD3D 11 118338954 118342744 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD3E 11 118304545 118316175 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD3EAP 19 45406209 45410766 FALSE 661 0.715350247494231 111 45349921 45423906 0.397448435712946 7 NA 0.397448435712946 7 NA 73985 NA 5 11 1 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD3G 11 118344344 118355161 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD4 12 6786858 6820808 FALSE 381 -0.0962006740122522 67 6638345 6823870 0.31995059840763 3 NA 0.31995059840763 3 NA 185525 NA 10 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD40 20 46118272 46129863 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD40LG 23 136648193 136660390 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD44 11 35138870 35232402 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD46 1 207752057 207795513 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD47 3 108043094 108091862 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD48 1 160678746 160711851 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD5 11 61102395 61127852 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 13 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD52 1 26317957 26320523 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD53 1 110871188 110899928 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD55 1 207321376 207386804 FALSE 39 -0.126177318869813 67 206934439 207582013 0.31995059840763 3 NA 0.31995059840763 3 NA 647574 NA 10 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD58 1 116514535 116571039 TRUE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD59 11 33703010 33736491 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD5L 1 157830914 157898256 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD6 11 60971680 61020377 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 16 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD63 12 55725323 55729707 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD68 17 7579467 7582113 FALSE 540 -0.560247871447121 34 7559238 7654707 0.312402751065481 1 0 0.312402751065481 1 0 95469 1 12 7 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD69 12 9752486 9760901 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD7 17 82314868 82317602 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD70 19 6583183 6604103 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD72 9 35609533 35646810 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD74 5 150401637 150412929 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD79A 19 41877120 41881372 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD79B 17 63928740 63932354 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD80 3 119524293 119559602 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD81 11 2376177 2397419 FALSE 341 0.150532842564489 86 2129151 2776033 0.360033220093454 4 NA 0.360033220093454 4 NA 646882 NA 11 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD82 11 44564427 44620363 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD83 6 14117256 14136918 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD84 1 160541095 160579516 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD86 3 122055366 122121139 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD8A 2 86784610 86808396 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 7 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD8B 2 86815339 86861924 FALSE 70 -0.71547500568643 29 86815737 88028585 0.39968910724052 1 0 0.39968910724052 1 0 1212848 1 6 9 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD8B2 2 106487364 106544297 FALSE 78 -0.410137368612735 39 106158011 108293668 NA 2 NA NA 2 NA 2135657 NA 8 7 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD9 12 6199715 6238271 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD93 20 23079349 23086340 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD96 3 111292719 111665750 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CD99L2 23 150766337 150898816 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDA 1 20588948 20618908 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDADC1 13 49247925 49293485 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 13 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDAN1 15 42723544 42737128 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 30 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC123 10 12195965 12250589 FALSE 314 0.0797787605968275 82 10796933 12825599 0.298111653356898 4 NA 0.298111653356898 4 NA 2028666 NA 10 13 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC14A 1 100345001 100520278 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC14B 9 96490241 96619830 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 16 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC14C 7 48919765 48927454 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 6 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC16 13 114234887 114272723 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC20 1 43358955 43363203 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC20B 5 55112995 55173175 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC23 5 138187648 138213343 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC25A 3 48157146 48188402 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC25B 20 3786772 3806121 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 18 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC25C 5 138285265 138338355 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC26 9 113255835 113275589 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC27 17 47117703 47189422 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 19 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC34 19 531712 542092 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC37 19 10391134 10420121 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC37L1 9 4679559 4708398 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC40 6 110180141 110254275 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 18 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC42 1 22052627 22092946 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC42BPA 1 226989865 227318474 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 40 3 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC42BPB 14 102932379 103057462 FALSE 467 -0.166720648541046 62 102922761 103677490 0.235629703240478 3 NA 0.235629703240478 3 NA 754729 NA 13 38 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC42BPG 11 64823387 64844569 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 39 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC42EP1 22 37560447 37569405 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC42EP2 11 65314818 65322429 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC42EP3 2 37641882 37738468 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC42EP4 17 73283624 73312175 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC42EP5 19 54465026 54473264 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC42SE1 1 151050971 151070325 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC42SE2 5 131245493 131398447 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC45 22 19479459 19520612 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 19 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC5L 6 44387525 44450426 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC6 17 40287633 40304657 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 22 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC7 1 91500893 91525764 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDC73 1 193121800 193254815 TRUE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 38 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDCA2 8 25458997 25507920 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDCA3 12 6844793 6852066 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 8 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDCA4 14 105009573 105021148 FALSE 474 -0.136925231270881 62 104993000 105529597 0.235629703240478 3 NA 0.235629703240478 3 NA 536597 NA 15 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDCA5 11 65066300 65084164 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDCA7 2 173354820 173368997 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 11 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDCA7L 7 21900900 21946084 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 13 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDCA8 1 37692418 37709719 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDCP1 3 45082278 45146422 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDCP2 1 54132968 54153770 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH1 16 68737225 68835548 TRUE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 35 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH10 5 24487100 24644978 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH11 16 64943753 65126112 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 18 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH12 5 21750673 22853622 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH13 16 82626803 83800640 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH15 16 89171767 89195492 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH16 16 66908122 66918984 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 18 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH17 8 94127171 94217303 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 17 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH18 5 19472951 20575873 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH19 18 66501083 66604138 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 16 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH2 18 27950966 28177446 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 21 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH20 18 61333582 61555773 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH22 20 46173733 46308498 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH23 10 71396934 71815947 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 92 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH24 14 23047062 23057538 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 17 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH26 20 59958427 60034011 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 20 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH3 16 68636189 68722616 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH4 20 61252426 61940617 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH5 16 66366622 66404786 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 16 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH6 5 31193750 31329146 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 15 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH7 18 65750252 65890341 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 16 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH8 16 61647242 62037035 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 17 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDH9 5 26880600 27121150 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 16 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDHR1 10 84194635 84219621 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDHR2 5 176542511 176595974 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 33 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDHR3 7 105876796 106033773 FALSE 247 -0.18197294596649 62 105388711 106112210 0.235629703240478 3 NA 0.235629703240478 3 NA 723499 NA 7 22 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDHR4 3 49790732 49799835 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 19 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDHR5 11 616565 626078 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 18 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDIP1 16 4510675 4538828 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDIPT 16 29858357 29863736 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK1 10 60778331 60794852 FALSE 324 0.504242099052201 104 60086767 62198353 0.397448435712946 6 NA 0.397448435712946 6 NA 2111586 NA 7 11 3 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK10 16 89680737 89696364 FALSE 534 -0.234744649087081 51 89587069 89729295 NA 2 NA NA 2 NA 142226 NA 8 12 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK11A 1 1702730 1724324 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 17 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK11B 1 1635227 1659012 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 17 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK12 17 39461511 39564907 TRUE 550 0.588438690170753 105 39461721 39864123 0.397448435712946 6 NA 0.397448435712946 6 NA 402402 NA 11 41 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK13 7 39949646 40099580 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK14 7 90466424 91210590 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK15 2 201790461 201895550 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK16 23 47217860 47229997 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 16 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK17 12 96278261 96400560 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 16 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK18 1 205504595 205532793 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK19 6 110609978 110815958 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK2 12 55966769 55972784 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK20 9 87966441 87974753 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK2AP1 12 123260971 123272334 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK2AP2 11 67506497 67508649 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK3 17 76000906 76005999 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK4 12 57747727 57756013 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK5 7 151053812 151058530 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK5R1 17 32486619 32491256 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK5R2 2 218959655 218962162 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK5RAP1 20 33358839 33401561 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK5RAP2 9 120388869 120580170 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 43 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK5RAP3 17 47967810 47981774 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 17 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK6 7 92604921 92836594 FALSE 238 0.922954019753601 114 92604908 92618098 0.397448435712946 9 NA 0.397448435712946 9 NA 13190 NA 1 59 0 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK7 5 69234795 69277430 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK8 13 26254104 26405238 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDK9 9 127785679 127790787 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 14 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKAL1 6 20534457 21232404 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKL1 14 50329404 50416461 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 10 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKL2 4 75578005 75630716 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKL3 5 134286350 134371047 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKL4 2 39175646 39229588 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKL5 23 18425583 18653629 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 27 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKN1A 6 36676460 36687339 TRUE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 16 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKN1B 12 12715058 12722371 TRUE 388 1.43206652229553 122 12717429 12726029 0.397448435712946 14 NA 0.397448435712946 14 NA 8600 NA 2 18 2 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKN1C 11 2883213 2885773 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 5 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKN2A 9 21967753 21995301 TRUE 286 0.499709039431433 104 21854732 22009699 0.397448435712946 6 NA 0.397448435712946 6 NA 154967 NA 4 20 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKN2AIP 4 183444591 183448198 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKN2AIPNL 5 134402087 134411898 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKN2B 9 22002903 22009363 TRUE 286 0.499709039431433 104 21854732 22009699 0.397448435712946 6 NA 0.397448435712946 6 NA 154967 NA 4 17 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKN2C 1 50960745 50974633 TRUE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKN2D 19 10566462 10569059 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDKN3 14 54396849 54420218 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 10 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDNF 10 14819250 14838575 FALSE 315 0.228244116357697 94 12828838 14820149 0.39968910724052 4 NA 0.39968910724052 4 NA 1991311 NA 13 5 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDO1 5 115804733 115816954 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDON 11 125955796 126063335 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 26 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDPF1 22 46244011 46250679 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDR1 23 140783578 140784366 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDR2 16 22345936 22437165 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDR2L 17 74987632 75005800 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDRT1 17 15565483 15619512 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 15 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDRT15 17 14235673 14236862 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 4 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDRT15L2 17 20579724 20580911 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDRT4 17 15436015 15503608 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDS1 4 84582979 84651338 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDS2 20 5126786 5197887 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDSN 6 31115090 31120446 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 7 5 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDT1 16 88803213 88809258 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDV3 3 133573730 133590261 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDX1 5 150166795 150184558 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDX2 13 27962137 27971139 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDX4 23 73447254 73455245 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDYL 6 4706159 4955551 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CDYL2 16 80597906 80804329 FALSE 530 0.0863261484312413 82 76522085 80684905 0.298111653356898 4 NA 0.298111653356898 4 NA 4162820 NA 12 10 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEACAM1 19 42507304 42561234 FALSE 656 -1.19927952331901 16 42433040 43267802 0.39968910724052 0 0 0.39968910724052 0 0 834762 0 13 13 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEACAM16 19 44699151 44710714 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEACAM18 19 51478622 51490952 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEACAM19 19 44662278 44684359 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEACAM20 19 44501677 44529788 FALSE 659 -0.801689271107813 24 44148801 44524243 0.39968910724052 1 0 0.39968910724052 1 0 375442 1 11 16 2 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEACAM21 19 41549518 41586844 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 8 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEACAM3 19 41796437 41811553 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 8 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEACAM4 19 41618971 41627074 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 8 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEACAM5 19 41708585 41729798 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 14 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEACAM6 19 41750977 41772208 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEACAM7 19 41673307 41706976 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEACAM8 19 42580241 42595055 FALSE 656 -1.19927952331901 16 42433040 43267802 0.39968910724052 0 0 0.39968910724052 0 0 834762 0 13 8 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEBPA 19 33299934 33302564 TRUE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 10 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEBPB 20 50190734 50192689 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEBPD 8 47736909 47739086 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEBPE 14 23117304 23119616 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEBPG 19 33373330 33382686 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEBPZ 2 37201612 37231713 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 21 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEBPZOS 2 37196488 37216193 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 12 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CECR2 22 17359949 17558149 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 27 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEL 9 133061978 133071861 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CELA1 12 51328443 51346679 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CELA2A 1 15456728 15472091 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CELA2B 1 15465909 15491400 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CELA3A 1 22001656 22012539 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CELA3B 1 21977021 21998642 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CELF1 11 47465933 47565569 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 13 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CELF2 10 10798397 11336675 FALSE 314 0.0797787605968275 82 10796933 12825599 0.298111653356898 4 NA 0.298111653356898 4 NA 2028666 NA 10 19 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CELF3 1 151702404 151716814 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CELF4 18 37243047 37566037 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CELF5 19 3224703 3297076 FALSE 597 -0.316308503877712 46 3155904 3648696 NA 2 NA NA 2 NA 492792 NA 16 13 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CELF6 15 72284727 72320129 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CELSR1 22 46360834 46537170 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 57 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CELSR2 1 109250019 109275750 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 52 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CELSR3 3 48636469 48662915 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 57 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEMIP 15 80779343 80951776 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEMIP2 9 71683366 71816690 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 26 6 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEMP1 16 2530035 2531417 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEND1 11 787104 790123 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPA 2 26764289 26801067 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPB 20 3783851 3786690 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPBD1 16 89969773 89972832 FALSE 535 0.126990432456591 86 89733549 90075852 0.360033220093454 4 NA 0.360033220093454 4 NA 342303 NA 12 3 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPC 4 67468748 67545606 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPE 4 103105806 103198409 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 60 8 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPF 1 214603195 214664588 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 46 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPH 5 69189548 69210357 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPI 23 101098218 101163681 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 21 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPJ 13 24882284 24922889 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 24 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPK 5 65517766 65563171 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPL 1 173799550 173824720 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPM 22 41938721 41947164 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 7 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPN 16 81006498 81033114 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPO 2 24793136 24822376 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 11 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPP 9 92325484 92620533 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 49 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPQ 6 49463378 49493107 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPS 1 10430443 10442809 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPS-CORT 1 10430102 10452153 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 8 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPT 16 67828157 67847811 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 17 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPU 4 184694618 184734133 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 14 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPV 17 16342534 16353656 FALSE 544 -0.432476680468626 39 16223200 17212252 NA 2 NA NA 2 NA 989052 NA 14 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPVL3 23 51617024 51618968 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 2 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPW 6 126340174 126348875 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 3 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CENPX 17 82018702 82024107 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 7 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP104 1 3812081 3857214 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 21 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP112 17 65635538 66192084 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP120 5 123344885 123423592 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 23 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP126 11 101915015 102001058 FALSE 363 -0.209376653333357 57 101455078 102081180 0.158317833115363 3 NA 0.158317833115363 3 NA 626102 NA 4 20 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP128 14 80476983 80959517 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 28 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP131 17 81189593 81222999 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 27 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP135 4 55948871 56033363 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP152 15 48712928 48811146 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 33 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP162 6 84124241 84227635 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP164 11 117314557 117413268 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 36 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP170 1 243124428 243255348 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 29 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP170B 14 104865280 104896770 FALSE 472 -0.319339290574403 46 104801767 104893804 NA 2 NA NA 2 NA 92037 NA 2 29 6 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP19 3 196706277 196712293 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP192 18 12991362 13125052 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 53 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP250 20 35455164 35519280 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 45 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP290 12 88049014 88142216 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 57 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP295 11 93661639 93730358 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 44 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP295NL 17 78870910 78903217 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 10 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP350 1 179954738 180114880 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 53 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP41 7 130393771 130442433 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 12 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP44 4 174283677 174333380 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP55 10 93496632 93529092 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP57 11 95789965 95832693 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP57L1 6 109095110 109163932 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 11 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP63 3 134485721 134575017 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 16 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP68 2 65056366 65087004 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP70 3 138494344 138594538 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 18 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP72 5 612272 667168 FALSE 160 0.207920496709617 94 224566 833800 0.39968910724052 4 NA 0.39968910724052 4 NA 609234 NA 9 16 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP76 18 12661833 12702777 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP78 9 78236062 78279690 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP83 12 94306449 94459988 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 15 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP85 1 26234200 26278808 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP85L 6 118460772 118710075 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 20 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP89 19 32875925 32971991 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 20 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP95 17 64506588 64542461 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEP97 3 101723925 101770562 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CEPT1 1 111139627 111185102 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CER1 9 14719724 14722717 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CERCAM 9 128411751 128437351 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CERK 22 46684411 46738261 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CERKL 2 181536676 181680665 FALSE 94 0.355754312996103 101 179443289 181538825 0.397448435712946 5 NA 0.397448435712946 5 NA 2095536 NA 5 29 4 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CERS1 19 18868545 18896727 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CERS2 1 150960583 150975004 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CERS3 15 100400395 100544995 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CERS4 19 8206736 8262421 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CERS5 12 50129306 50167533 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CERS6 2 168455862 168775137 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CES1 16 55802851 55833337 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CES2 16 66934444 66945096 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CES3 16 66961237 66975148 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CES4A 16 66988589 67009758 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CES5A 16 55846154 55956031 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CETN1 18 580357 582114 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CETN2 23 152826973 152830777 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CETN3 5 90392261 90409786 FALSE 171 0.215918464504023 94 84137275 90525167 0.39968910724052 4 NA 0.39968910724052 4 NA 6387892 NA 10 6 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CETP 16 56961850 56983845 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 17 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP100 3 126394939 126436556 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP126 1 161364731 161367874 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP157 9 127706989 127716002 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 18 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP161 15 81007033 81149175 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP20 16 58113588 58129450 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP206 6 87407983 87464465 FALSE 201 -0.221189436484543 57 87265553 88929289 0.158317833115363 3 NA 0.158317833115363 3 NA 1663736 NA 12 13 4 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP221 2 119544432 119662251 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 23 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP298 21 32592079 32612866 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP299 4 80335720 80963756 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP300 11 102047443 102084560 FALSE 363 -0.209376653333357 57 101455078 102081180 0.158317833115363 3 NA 0.158317833115363 3 NA 626102 NA 4 7 1 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP36 2 55519604 55545879 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP410 21 44328944 44339402 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP43 10 104129888 104232362 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 39 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP44 3 113286947 113441610 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 37 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP45 1 159872364 159900163 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 12 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP46 10 132808392 132942823 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 61 6 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP47 23 35919734 36385319 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 68 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP52 17 9576627 9643459 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP53 18 50227193 50266522 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP54 12 96489571 96875555 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 68 6 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP57 1 43172149 43254358 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 29 3 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP58 10 104353764 104455090 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP61 20 20052514 20360702 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 33 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP65 2 219002846 219041527 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 42 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP69 7 90245174 90311063 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 25 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP70 10 73253759 73358859 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 27 8 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP73 12 113149858 113159276 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP74 1 1921951 2003837 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 39 5 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP77 9 132410043 132573317 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP97 4 185159665 185209504 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 9 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP97D1 17 43780435 43787612 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFAP99 4 2418974 2462942 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 17 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFB 6 31945650 31952084 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 18 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFC1 2 130592168 130599575 FALSE 83 -2.75809702681023 3 130463255 130655062 0.397448435712946 0 0 0.397448435712946 0 0 191807 0 4 2 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFD 19 859643 863630 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFDP1 16 75293698 75433485 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFH 1 196651878 196747504 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 23 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFHR1 1 196819757 196832189 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFHR2 1 196943756 196959226 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFHR3 1 196774795 196795406 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFHR4 1 196888014 196918713 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFHR5 1 196977556 197009674 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFI 4 109740694 109802179 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 16 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFL1 11 65823022 65862026 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFL2 14 34706769 34714823 FALSE 449 -0.090252011740912 67 31387284 34807549 0.31995059840763 3 NA 0.31995059840763 3 NA 3420265 NA 14 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFLAR 2 201116104 201176687 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFP 23 47623172 47630305 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 11 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CFTR 7 117465784 117715971 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 35 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CGA 6 87085498 87095406 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CGAS 6 73413515 73452276 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CGB1 19 49035610 49036895 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CGB2 19 49031912 49033238 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CGB3 19 49022869 49024333 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 4 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CGB5 19 49043884 49045311 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 4 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CGB7 19 49054275 49058860 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 4 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CGB8 19 49047638 49049106 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 4 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CGGBP1 3 88051944 88149885 FALSE 121 -0.0206780540273211 77 75738958 89482041 0.252310779181821 4 NA 0.252310779181821 4 NA 13743083 NA 14 19 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CGN 1 151510510 151538692 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 24 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CGNL1 15 57375967 57550727 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CGREF1 2 27098889 27119115 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CGRRF1 14 54509812 54539309 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CH25H 10 89205629 89207314 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHAC1 15 40952962 40956519 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHAC2 2 53767792 53775196 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHAD 17 50464496 50468966 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHADL 22 41229510 41240934 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHAF1A 19 4402662 4445018 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 20 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHAF1B 21 36385378 36419015 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHAMP1 13 114314335 114337626 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHAT 10 49609095 49665104 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 25 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHCHD1 10 73782047 73783652 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHCHD10 22 23765834 23768443 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHCHD2 7 56101569 56106576 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHCHD3 7 132784868 133082088 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHCHD4 3 14112077 14124870 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHCHD5 2 112584240 112589275 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHCHD6 3 126704220 126960406 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHCHD7 8 56211686 56218798 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHD1 5 98853985 98928957 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 40 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHD1L 1 147242641 147295766 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 23 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHD2 15 92900189 93028005 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 61 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHD3 17 7884806 7912760 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 42 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHD4 12 6570082 6614524 FALSE 380 0.803724470352739 112 6567915 6621208 0.397448435712946 8 NA 0.397448435712946 8 NA 53293 NA 4 49 5 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHD5 1 6101793 6180123 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 46 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHD6 20 41402101 41618494 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 50 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHD7 8 60678778 60868028 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 51 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHD8 14 21385194 21456126 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 48 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHD9 16 53055033 53329150 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 55 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHDH 3 53812335 53846390 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHEK1 11 125625136 125676255 TRUE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 31 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHEK2 22 28687743 28742422 TRUE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 30 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHERP 19 16517889 16542530 FALSE 629 -0.412926938873791 39 16377140 16841876 NA 2 NA NA 2 NA 464736 NA 12 22 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHFR 12 132822187 132956304 FALSE 427 0.237104219097234 97 132687678 132861490 0.39968910724052 4 NA 0.39968910724052 4 NA 173812 NA 5 27 3 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHGA 14 92923080 92935293 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHGB 20 5911430 5925361 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 11 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHI3L1 1 203178931 203186749 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHI3L2 1 111200771 111243440 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHIA 1 111290862 111320566 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHIC1 23 73563200 73687102 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHIC2 4 54009789 54064690 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHID1 11 867860 915058 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHIT1 1 203212827 203273641 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHKA 11 68052859 68121444 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHKB 22 50578949 50601455 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHKB-CPT1B 22 50568869 50582965 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHL1 3 196596 409417 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 26 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHM 23 85861180 86047562 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 16 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHML 1 241628853 241640254 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHMP1A 16 89644431 89657845 FALSE 534 -0.234744649087081 51 89587069 89729295 NA 2 NA NA 2 NA 142226 NA 8 7 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHMP1B 18 11851396 11854449 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHMP2A 19 58551566 58555124 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHMP2B 3 87227271 87255548 FALSE 121 -0.0206780540273211 77 75738958 89482041 0.252310779181821 4 NA 0.252310779181821 4 NA 13743083 NA 14 7 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHMP3 2 86503431 86563479 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHMP4A 14 24209583 24213869 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHMP4B 20 33811304 33854366 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHMP4C 8 81732434 81759515 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHMP5 9 33264879 33282069 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHMP6 17 80991598 81009517 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHMP7 8 23243637 23262000 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHN1 2 174799363 175005369 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 15 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHN2 7 29146569 29514328 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 20 4 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHODL 21 17901263 18267373 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHORDC1 11 90201160 90223364 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 11 2 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHP1 15 41230839 41281890 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHP2 16 23754627 23758951 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHPF 2 219538947 219543787 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHPF2 7 151232489 151238827 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHPT1 12 101696947 101744140 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 17 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRAC1 8 140511298 140517137 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRD 3 184380073 184390736 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 24 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRDL1 23 110673856 110795819 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRDL2 11 74696429 74731385 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRFAM7A 15 30357766 30393849 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRM1 11 62908679 62921807 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRM2 7 136868669 137020255 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRM3 1 239386565 239915452 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRM4 11 46385098 46386608 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRM5 15 33968720 34067457 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNA1 2 174747592 174787935 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNA10 11 3665587 3671384 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNA2 8 27459761 27479883 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 9 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNA3 15 78593052 78621295 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNA4 20 63343223 63378401 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNA5 15 78565520 78595269 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNA6 8 42752620 42796392 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNA7 15 31923438 32173018 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNA9 4 40335329 40355217 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 8 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNB1 17 7445061 7457707 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNB2 1 154567781 154580026 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNB3 8 42697376 42737407 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNB4 15 78624119 78727754 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRND 2 232525993 232536667 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNE 17 4897774 4934438 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 22 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHRNG 2 232539727 232546403 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST1 11 45648877 45665622 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST10 2 100391860 100417656 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST11 12 104455295 104762014 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST12 7 2403560 2448483 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST13 3 126524283 126543291 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST14 15 40470998 40474571 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST15 10 124007666 124093607 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST2 3 143119331 143124014 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST3 10 71964365 72013564 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST4 16 71525233 71538746 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST5 16 75528535 75535247 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST6 16 75472052 75495445 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST7 23 46573784 46598408 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST8 19 33621955 33773509 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHST9 18 26906481 27185317 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHSY1 15 101175723 101251932 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHSY3 5 129904472 130186634 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHTF18 16 788046 800737 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 26 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHTF8 16 69118010 69132584 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHTOP 1 153633982 153646306 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHUK 10 100188298 100229619 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHURC1 14 64914361 64944591 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CHURC1-FNTB 14 64914485 65061803 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 31 1 TRUE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIAO1 2 96266132 96273349 FALSE 73 0.130965048807663 86 96195440 96642849 0.360033220093454 4 NA 0.360033220093454 4 NA 447409 NA 10 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIAO2A 15 64072559 64094018 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIAO2B 16 66932055 66934423 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIAO3 16 729753 741329 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIAPIN1 16 57428169 57447528 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIART 1 150282543 150287093 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIB1 15 90229975 90234047 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIB2 15 78104606 78131544 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIB3 19 16161368 16173525 FALSE 627 -0.490607499224798 35 15728649 16234395 0.252021069663427 1 0 0.252021069663427 1 0 505746 1 13 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIB4 2 26581202 26641368 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIC 19 42268537 42295797 TRUE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 45 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIDEA 18 12254319 12277595 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIDEB 14 24305096 24311430 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIDEC 3 9866711 9880254 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIITA 16 10866222 10943021 TRUE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 27 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CILP 15 65194758 65211488 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CILP2 19 19538248 19546659 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CINP 14 102341102 102362916 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIP2A 3 108549869 108589644 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIPC 14 77098097 77117287 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIR1 2 174348022 174395715 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIRBP 19 1259384 1274880 FALSE 587 0.217691882461168 93 1042394 1299919 0.39968910724052 4 1 0.39968910724052 4 1 257525 3 12 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CISD1 10 58269058 58289586 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CISD2 4 102868974 102892807 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CISD3 17 38730235 38735044 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CISH 3 50606490 50611831 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIT 12 119685790 119877291 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 48 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CITED1 23 72301638 72307187 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CITED2 6 139371807 139374620 FALSE 220 0.0543375783167098 82 138298662 142443515 0.298111653356898 4 NA 0.298111653356898 4 NA 4144853 NA 16 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CITED4 1 40861051 40862366 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CIZ1 9 128166064 128204383 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 22 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CKAP2 13 52455429 52476628 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CKAP2L 2 112736607 112764677 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CKAP4 12 106237877 106304279 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CKAP5 11 46743048 46846308 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 44 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CKB 14 103519659 103523111 FALSE 467 -0.166720648541046 62 102922761 103677490 0.235629703240478 3 NA 0.235629703240478 3 NA 754729 NA 13 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CKLF 16 66552563 66566251 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CKLF-CMTM1 16 66552587 66579135 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CKM 19 45306414 45322977 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 9 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CKMT1A 15 43692886 43699222 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CKMT1B 15 43593054 43604901 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 13 3 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CKMT2 5 81233285 81266397 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CKS1B 1 154974653 154979249 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CKS2 9 89311198 89316703 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLASP1 2 121337776 121649587 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 43 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLASP2 3 33496245 33718356 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 43 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLASRP 19 45039040 45070956 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 20 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLBA1 14 104985775 105010482 FALSE 473 -0.596284854283221 31 104894354 104991443 0.39968910724052 1 0 0.39968910724052 1 0 97089 1 4 6 1 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLC 19 39731250 39738028 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLCA1 1 86468368 86500289 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 21 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLCA2 1 86424086 86456558 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 19 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLCA4 1 86547078 86580754 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLCC1 1 108929508 108963457 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLCF1 11 67364168 67374177 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLCN1 7 143316126 143352083 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 26 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLCN2 3 184346185 184361651 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 22 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLCN3 4 169612633 169723673 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLCN4 23 10156945 10237660 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 16 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLCN5 23 49922615 50099235 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 18 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLCN6 1 11806096 11848079 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 27 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLCN7 16 1444934 1475580 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 26 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLCNKA 1 16018875 16034050 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 21 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLCNKB 1 16043736 16057308 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 21 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN1 3 190305701 190322475 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN10 13 95433604 95579759 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN11 3 170418865 170454733 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN12 7 90383721 90513402 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN14 21 36460621 36576569 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN15 7 101232092 101238820 FALSE 243 -0.216974721306157 57 101087510 101616208 0.158317833115363 3 NA 0.158317833115363 3 NA 528698 NA 13 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN16 3 190322541 190412143 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN17 21 30165564 30166756 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN18 3 137998735 138033655 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 8 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN19 1 42733093 42740254 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN2 23 106900164 106930861 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN20 6 155264013 155276548 FALSE 224 -0.117433393604286 66 152211521 156776133 0.330876988437597 3 0 0.330876988437597 3 0 4564612 3 15 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN22 4 183318194 183320774 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN23 8 8701938 8704106 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 4 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN24 4 183321764 183322426 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN25 11 113779747 113780500 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN3 7 73768997 73770270 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN34 23 9967358 9968352 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN4 7 73799542 73832693 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN5 22 19523024 19527545 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN6 16 3014712 3020071 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 3 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN7 17 7259903 7263983 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN8 21 30214006 30216073 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDN9 16 3012456 3014505 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 3 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDND1 3 98497912 98523066 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLDND2 19 51367098 51369003 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC10A 17 7074537 7080307 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 9 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC11A 19 50723329 50725718 FALSE 671 0.319009489173821 99 50630099 50948696 0.361681390833996 5 NA 0.361681390833996 5 NA 318597 NA 14 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC12A 12 9951316 9995694 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 10 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC12B 12 10010627 10018619 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 7 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC14A 14 38254103 38256369 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC16A 16 10944488 11182189 FALSE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 27 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC17A 19 14583084 14611157 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC18A 16 69950705 69964452 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC18B 16 74408270 74421953 FALSE 528 -0.523993511899561 34 73143840 74409864 0.312402751065481 1 0 0.312402751065481 1 0 1266024 1 4 13 5 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC18C 16 70173322 70187361 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC19A 16 19285739 19322145 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC1A 12 10069554 10111627 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC1B 12 9985642 10013424 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 8 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC2A 12 9898673 9932381 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC2B 12 9852984 9870136 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC2D 12 9664969 9699555 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC2L 7 139523856 139544984 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC3A 16 78022515 78066761 FALSE 530 0.0863261484312413 82 76522085 80684905 0.298111653356898 4 NA 0.298111653356898 4 NA 4162820 NA 12 5 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC3B 3 45001548 45036071 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC4A 12 8123632 8138607 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC4C 12 7729415 7751605 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC4D 12 8509475 8522366 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC4E 12 8533305 8540963 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC4F 2 70808643 70820600 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC4G 19 7728957 7733906 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC4M 19 7763149 7769605 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC5A 7 141927357 141947007 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC6A 12 8455926 8478330 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC7A 12 10116777 10130258 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLEC9A 12 10030677 10066027 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLECL1 12 9715860 9733299 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLGN 4 140388455 140427968 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLHC1 2 55174791 55232563 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 11 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLIC1 6 31730581 31739763 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLIC2 23 155276211 155334657 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLIC3 9 136994635 136996803 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLIC4 1 24745357 24844324 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLIC5 6 45880827 46080348 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLIC6 21 34669389 34718227 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLINT1 5 157785743 157859175 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLIP1 12 122271432 122422632 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 30 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLIP2 7 74289475 74405943 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLIP3 19 36014660 36033343 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLIP4 2 29097705 29189643 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 17 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLK1 2 200853009 200864744 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLK2 1 155262868 155278491 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLK3 15 74598500 74645414 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 19 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLK4 5 178602664 178630615 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLLU1OS 12 92420094 92428148 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 5 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLMN 14 95181940 95319906 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLMP 11 123069865 123195281 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLN3 16 28474111 28495575 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLN5 13 76990660 77019143 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLN6 15 68206992 68257211 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 8 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLN8 8 1755778 1801711 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLNK 4 10486395 10684865 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 18 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLNS1A 11 77514936 77637805 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLOCK 4 55427903 55547138 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 21 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLP1 11 57648992 57661868 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLPB 11 72285495 72434680 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLPP 19 6361452 6368910 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLPS 6 35794982 35797344 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLPSL1 6 35781017 35793675 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 4 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLPSL2 6 35776594 35779552 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLPTM1 19 44954585 44993341 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 17 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLPTM1L 5 1317744 1345099 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 16 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLPX 15 65148219 65185342 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLRN1 3 150926163 150972999 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLRN2 4 17515165 17527104 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLRN3 10 127877841 127892947 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLSPN 1 35720218 35769967 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 29 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLSTN1 1 9729026 9824526 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 20 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLSTN2 3 139935185 140577397 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 18 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLSTN3 12 7129698 7158945 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 21 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLTA 9 36190856 36304781 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 22 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLTB 5 176392455 176416569 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLTC 17 59619689 59696956 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 33 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLTCL1 22 19179473 19291716 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 35 8 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLTRN 23 15627318 15675012 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLU 8 27596917 27615031 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLUAP1 16 3500924 3539048 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 13 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLUH 17 2689386 2712663 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 26 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLUL1 18 596988 650334 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLVS1 8 61057158 61501645 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLVS2 6 122995971 123072927 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CLYBL 13 99606669 99897134 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMA1 14 24505353 24508265 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMAS 12 22046174 22065674 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMBL 5 10275875 10308026 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMC1 3 28241584 28325142 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMC2 16 80966448 81020270 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMC4 23 155061622 155071362 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMIP 16 81445170 81711762 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMKLR1 12 108288044 108339341 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMPK1 1 47333797 47378839 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMPK2 2 6840570 6866635 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMSS1 3 99817834 100181732 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMTM1 16 66566393 66579137 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMTM2 16 66579448 66588275 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMTM3 16 66603874 66613892 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMTM4 16 66614750 66696707 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMTM5 14 23376773 23379772 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMTM6 3 32481312 32503408 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMTM7 3 32391671 32483067 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMTM8 3 32238679 32370325 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMTR1 6 37433219 37482827 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMTR2 16 71281389 71289715 TRUE 525 -0.688230984841458 29 70832925 71285909 0.39968910724052 1 0 0.39968910724052 1 0 452984 1 2 10 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CMYA5 5 79689877 79800240 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 56 7 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNBD1 8 86866442 87615219 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNBD2 20 35954564 36030700 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNBP 3 129169484 129183922 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNDP1 18 74534440 74587212 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 13 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNDP2 18 74495816 74523454 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNEP1R1 16 50024410 50037088 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNFN 19 42387019 42390287 FALSE 655 -0.303862148002883 46 42297355 42428877 NA 2 NA NA 2 NA 131522 NA 7 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNGA1 4 47935977 48016672 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNGA2 23 151738451 151745304 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNGA3 2 98346155 98398601 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNGA4 11 6234765 6244429 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 10 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNGB1 16 57882340 57971116 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 36 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNGB3 8 86553977 86743675 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 23 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNIH1 14 54423560 54441431 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 5 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNIH2 11 66278190 66285301 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNIH3 1 224434660 224740549 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNIH4 1 224356850 224379459 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNKSR1 1 26177403 26189886 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNKSR2 23 21372801 21654695 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 26 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNKSR3 6 154387504 154510659 FALSE 224 -0.117433393604286 66 152211521 156776133 0.330876988437597 3 0 0.330876988437597 3 0 4564612 3 15 14 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNMD 13 52703264 52739812 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNN1 19 11538717 11550323 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNN2 19 1026581 1039068 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNN3 1 94896949 94927278 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNNM1 10 99329099 99394330 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNNM2 10 102918293 103090221 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNNM3 2 96816245 96833911 FALSE 74 -0.129279957310398 64 96646499 97245420 0.313405470508204 3 1 0.313405470508204 3 1 598921 2 10 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNNM4 2 96760902 96811891 FALSE 74 -0.129279957310398 64 96646499 97245420 0.313405470508204 3 1 0.313405470508204 3 1 598921 2 10 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNOT1 16 58519951 58629886 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 50 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNOT10 3 32685145 32773875 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNOT11 2 101252802 101270316 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNOT2 12 70242994 70354993 FALSE 415 0.0296903115421813 74 69585546 71157651 0.246063395031215 4 2 0.246063395031215 4 2 1572105 2 11 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNOT3 19 54137717 54155708 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 18 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNOT4 7 135361795 135510127 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 15 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNOT6 5 180494412 180578405 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNOT6L 4 77713387 77819615 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNOT7 8 17224964 17246878 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNOT8 5 154857553 154876793 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNOT9 2 218568580 218597080 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNP 17 41966741 41977731 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 10 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNPPD1 2 219171897 219178106 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 10 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNPY1 7 155474206 155555450 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNPY2 12 56309842 56316336 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNPY3 6 42929192 42939287 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNPY4 7 100119613 100125511 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNR1 6 88139864 88166359 FALSE 201 -0.221189436484543 57 87265553 88929289 0.158317833115363 3 NA 0.158317833115363 3 NA 1663736 NA 12 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNR2 1 23870526 23913362 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 5 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNRIP1 2 68284171 68320051 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNST 1 246566444 246668584 FALSE 45 -0.259945689995748 51 245749557 247491500 NA 2 NA NA 2 NA 1741943 NA 13 14 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTD1 17 42798792 42811587 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTD2 19 40222208 40226697 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTF 11 58622673 58625733 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTFR 9 34551432 34590140 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTLN 9 17134982 17503923 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTN1 12 40692442 41072418 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 26 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTN2 1 205042937 205078284 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 23 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTN3 3 74262568 74521140 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 23 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTN4 3 2098813 3057956 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 22 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTN5 11 99020953 100358885 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 24 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTN6 3 1092576 1404217 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 24 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTNAP1 17 42682613 42699814 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 29 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTNAP2 7 146116002 148420998 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 29 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTNAP3 9 39072767 39288315 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 20 5 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTNAP3B 9 41890314 42129510 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 16 6 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTNAP4 16 76277278 76559238 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 27 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTNAP5 2 124025287 124915287 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 27 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTRL 9 121074863 121177610 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 48 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CNTROB 17 7932101 7949918 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 20 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COA1 7 43608456 43729717 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COA3 17 42795147 42798704 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COA4 11 73872667 73876988 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COA5 2 98599310 98608515 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COA6 1 234373456 234384049 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COA7 1 52684451 52698366 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COASY 17 42561467 42566277 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COBL 7 51016212 51316818 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 27 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COBLL1 2 164653624 164843679 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 24 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COCH 14 30874514 30895065 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COG1 17 73192632 73208507 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COG2 1 230642489 230693982 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COG3 13 45464898 45536630 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COG4 16 70480568 70523565 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 19 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COG5 7 107201555 107564514 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 29 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COG6 13 39655627 39791665 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 20 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COG7 16 23388493 23453180 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COG8 16 69320140 69339667 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COIL 17 56938187 56961054 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL10A1 6 116118923 116158747 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 9 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL11A1 1 102876467 103108872 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 68 5 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL11A2 6 33162681 33192499 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 62 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL12A1 6 75084326 75206051 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 75 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL13A1 10 69801867 69964275 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 41 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL14A1 8 120059780 120372036 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 47 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL15A1 9 98943179 99070792 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 44 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL16A1 1 31652247 31704319 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 67 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL17A1 10 104031286 104085957 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 55 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL18A1 21 45405137 45513720 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 53 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL19A1 6 69866571 70209976 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 49 6 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL1A1 17 50183289 50201632 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 46 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL1A2 7 94394561 94431232 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 51 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL20A1 20 63293186 63334851 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 34 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL21A1 6 56056590 56394094 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 33 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL22A1 8 138588235 138914006 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 67 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL23A1 5 178237618 178590555 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 29 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL24A1 1 85729233 86156943 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 65 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL25A1 4 108808725 109302752 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 41 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL26A1 7 101362820 101559024 FALSE 243 -0.216974721306157 57 101087510 101616208 0.158317833115363 3 NA 0.158317833115363 3 NA 528698 NA 13 13 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL27A1 9 114155560 114312511 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 68 5 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL28A1 7 7356203 7535853 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 38 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL2A1 12 47972965 48004554 FALSE 402 1.053712508772 116 47973141 48045294 0.397448435712946 10 NA 0.397448435712946 10 NA 72153 NA 2 59 4 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL3A1 2 188974320 189012746 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 54 6 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL4A1 13 110148963 110307233 FALSE 442 1.04190250537948 115 109752780 110164876 0.397448435712946 10 NA 0.397448435712946 10 NA 412096 NA 2 53 6 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL4A2 13 110305812 110513209 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 56 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL4A3 2 227164565 227314792 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 52 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL4A3BP 5 75356345 75512138 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL4A4 2 227002711 227164453 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 49 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL4A5 23 108439844 108697545 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 50 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL4A6 23 108155607 108439497 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 50 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL5A1 9 134641774 134844843 FALSE 307 0.839250393178831 113 134326493 134730469 0.397448435712946 8 NA 0.397448435712946 8 NA 403976 NA 2 69 8 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL5A2 2 189031896 189225312 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 57 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL5A3 19 9959561 10010471 FALSE 612 -0.2463765322708 51 9849131 10133617 NA 2 NA NA 2 NA 284486 NA 11 61 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL6A1 21 45981737 46005050 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 34 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL6A2 21 46098097 46132849 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 33 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL6A3 2 237324003 237414375 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 64 7 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL6A5 3 130345516 130484844 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 62 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL6A6 3 130560334 130678155 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 51 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL7A1 3 48564073 48595267 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 92 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL8A1 3 99638475 99799226 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 10 0 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL8A2 1 36095236 36125220 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL9A1 6 70215061 70303083 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 38 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL9A2 1 40300487 40317813 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 27 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COL9A3 20 62816244 62841159 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 31 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COLCA2 11 111298555 111308735 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COLEC10 8 118995452 119106582 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COLEC11 2 3594832 3644644 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 10 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COLEC12 18 316740 500722 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COLGALT1 19 17555594 17583162 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 13 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COLGALT2 1 183929854 184037729 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COLQ 3 15450133 15521751 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 18 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COMMD1 2 61888724 62147247 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COMMD10 5 116084991 116412762 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COMMD2 3 149738470 149752499 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COMMD3 10 22315974 22320308 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COMMD3-BMI1 10 22316388 22329542 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COMMD4 15 75335891 75343224 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COMMD5 8 144841042 144853736 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 11 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COMMD6 13 75525219 75549439 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COMMD7 20 32702691 32743997 FALSE 689 0.316430543791893 99 32330098 32885548 0.361681390833996 5 NA 0.361681390833996 5 NA 555450 NA 9 8 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COMMD8 4 47450796 47463719 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COMMD9 11 36269284 36289449 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COMP 19 18782773 18791314 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COMT 22 19941607 19969975 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 6 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COMTD1 10 75233969 75236030 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COP1 1 175944831 176207493 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPA 1 160288686 160343400 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 34 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPB1 11 14443440 14500027 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPB2 3 139355600 139389732 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 24 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPE 19 18899514 18919397 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPG1 3 129249606 129277773 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPG2 7 130506238 130668748 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPRS 17 31851864 31859337 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPS2 15 49106068 49155661 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 13 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPS3 17 17246820 17281293 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 11 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPS4 4 83034447 83075818 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPS5 8 67043079 67083783 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPS6 7 100088954 100092200 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPS7A 12 6723741 6731875 FALSE 381 -0.0962006740122522 67 6638345 6823870 0.31995059840763 3 NA 0.31995059840763 3 NA 185525 NA 10 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPS7B 2 231781671 231809254 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPS8 2 237085312 237100466 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPS9 2 240126563 240136807 FALSE 109 -0.204551948627658 52 240042747 240874079 0.261858812358373 3 1 0.261858812358373 3 1 831332 2 13 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPZ1 12 54301202 54351849 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COPZ2 17 48026167 48038030 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COQ10A 12 56266858 56270966 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COQ10B 2 197453423 197475308 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COQ2 4 83261536 83284914 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COQ3 6 99369400 99394204 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COQ4 9 128322536 128334072 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COQ5 12 120503274 120534434 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COQ6 14 73949926 73963670 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 14 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COQ7 16 19067599 19080095 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COQ8A 1 226897536 226987545 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COQ8B 19 40691529 40718207 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 19 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COQ9 16 57447425 57461275 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CORIN 4 47593998 47838106 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 24 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CORO1A 16 30182827 30189076 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CORO1B 11 67435510 67443821 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CORO1C 12 108645109 108731596 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CORO2A 9 98120975 98192640 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CORO2B 15 68578969 68727806 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CORO6 17 29614756 29622907 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CORO7 16 4354542 4425705 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 36 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CORO7-PAM16 16 4340251 4420494 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 41 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CORT 1 10449719 10451902 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 2 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COTL1 16 84565594 84618077 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX10 17 14069496 14208677 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 9 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX11 17 54951902 54968785 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX14 12 50111979 50120457 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX15 10 99711844 99732100 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX16 14 70325081 70359731 FALSE 456 -0.528554564313879 34 70049041 70667652 0.312402751065481 1 0 0.312402751065481 1 0 618611 1 8 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX17 3 119654513 119677454 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX18 4 73052362 73069755 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 7 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX19 7 898778 975599 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 16 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX20 1 244835322 244845057 FALSE 44 0.117466813329847 86 243659450 245702541 0.360033220093454 4 NA 0.360033220093454 4 NA 2043091 NA 11 5 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX4I1 16 85798633 85807044 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX4I2 20 31637888 31645006 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX5A 15 74919791 74938168 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX5B 2 97646040 97648383 FALSE 76 -0.26669136290751 51 97549412 97702686 NA 2 NA NA 2 NA 153274 NA 4 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX6A1 12 120438090 120440742 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX6A2 16 31427731 31428428 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX6B1 19 35648223 35658861 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX6B2 19 55349306 55354814 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX6C 8 99873200 99894062 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX7A1 19 36150922 36152869 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX7A2 6 75237675 75250323 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX7A2L 2 42333546 42425088 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX7B 23 77899438 77907373 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX7B2 4 46734827 46909235 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX7C 5 86617904 86620962 FALSE 171 0.215918464504023 94 84137275 90525167 0.39968910724052 4 NA 0.39968910724052 4 NA 6387892 NA 10 2 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX8A 11 63974607 63976543 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 COX8C 14 93347191 93348356 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CP 3 149162410 149222055 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 29 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPA1 7 130380339 130388114 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPA2 7 130266827 130289798 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 12 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPA3 3 148865256 148897196 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 12 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPA4 7 130293134 130324180 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPA5 7 130344816 130368730 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPA6 8 67422038 67746385 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPAMD8 19 16892947 17026815 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 47 7 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPB1 3 148791102 148860187 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 11 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPB2 13 46053195 46105033 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPD 17 30378905 30469989 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPE 4 165361194 165498320 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPEB1 15 82543201 82648861 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 13 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPEB2 4 15002674 15070153 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 19 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPEB3 10 92046692 92291087 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPEB4 5 173888280 173961976 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 15 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPED1 7 120988677 121297444 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 23 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPHXL 16 75714224 75726442 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPLANE1 5 37106228 37249428 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 65 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPLANE2 1 16231700 16237162 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPLX1 4 784957 826198 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 4 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPLX2 5 175796310 175884020 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPLX3 15 74826547 74831802 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPLX4 18 59275156 59318649 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPM 12 68842197 68971570 FALSE 412 1.22230241004154 119 68808384 68845378 0.397448435712946 12 NA 0.397448435712946 12 NA 36994 NA 2 21 0 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPN1 10 100042193 100081877 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPN2 3 194339765 194351328 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPNE1 20 35626031 35664956 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 25 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPNE2 16 57092537 57148367 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 17 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPNE3 8 86514427 86561498 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPNE4 3 131533555 132285410 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 17 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPNE5 6 36740775 36840002 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 24 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPNE6 14 24070837 24078100 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 17 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPNE7 16 89575768 89597246 FALSE 533 -0.192592276429899 57 89508498 89586624 0.158317833115363 3 NA 0.158317833115363 3 NA 78126 NA 3 19 1 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPNE8 12 38646822 38907430 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPNE9 3 9703807 9729908 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 21 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPO 2 206939554 206969474 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 9 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPOX 3 98579446 98593723 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPPED1 16 12659799 12804017 FALSE 518 0.520580734359524 105 11965400 14446991 0.397448435712946 6 NA 0.397448435712946 6 NA 2481591 NA 8 5 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPQ 8 96645227 97149654 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPS1 2 210477682 210679107 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 39 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPSF1 8 144393229 144409349 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 31 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPSF2 14 92121937 92172145 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPSF3 2 9423568 9473101 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 19 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPSF4 7 99438922 99457371 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPSF4L 17 73248449 73262352 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPSF6 12 69239537 69274358 FALSE 413 -0.0193215587818043 77 68856685 69390241 0.252310779181821 4 NA 0.252310779181821 4 NA 533556 NA 4 13 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPSF7 11 61402641 61430031 FALSE 351 -0.00270858795298945 77 61249834 61434618 0.252310779181821 4 NA 0.252310779181821 4 NA 184784 NA 10 12 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPT1A 11 68754620 68844410 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPT1B 22 50568861 50578465 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPT1C 19 49690898 49713731 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPT2 1 53196429 53214197 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPTP 1 1324756 1328897 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPVL 7 28995231 29195451 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 15 5 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPXCR1 23 88747225 88754785 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPXM1 20 2794069 2800637 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPXM2 10 123706207 123940267 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 18 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CPZ 4 8592660 8619759 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 15 6 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CR1 1 207496147 207641765 FALSE 39 -0.126177318869813 67 206934439 207582013 0.31995059840763 3 NA 0.31995059840763 3 NA 647574 NA 10 37 6 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CR1L 1 207645113 207738416 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CR2 1 207454230 207489895 FALSE 39 -0.126177318869813 67 206934439 207582013 0.31995059840763 3 NA 0.31995059840763 3 NA 647574 NA 10 23 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRABP1 15 78340324 78348230 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRABP2 1 156699606 156705816 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRACR2A 12 3606633 3764819 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRACR2B 11 826144 831991 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRADD 12 93677375 93894840 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRAMP1 16 1612325 1677908 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 27 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRAT 9 129094810 129111189 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 18 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRB1 1 197268204 197478455 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRB2 9 123356170 123380324 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 24 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRB3 19 6463777 6467221 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRBN 3 3144628 3179727 TRUE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 16 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRCP 7 66114604 66154568 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRCT1 1 152514502 152516010 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CREB1 2 207529737 207603431 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CREB3 9 35732335 35737004 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CREB3L1 11 46277661 46321422 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CREB3L2 7 137874979 138002067 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CREB3L3 19 4153601 4173054 FALSE 599 0.276554850290338 97 3959289 4175087 0.39968910724052 4 NA 0.39968910724052 4 NA 215798 NA 7 12 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CREB3L4 1 153967534 153974363 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CREB5 7 28299321 28825894 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 14 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CREBBP 16 3725054 3880726 TRUE 514 0.622835549580881 107 3565001 3966951 0.397448435712946 7 NA 0.397448435712946 7 NA 401950 NA 6 69 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CREBL2 12 12611827 12645108 FALSE 387 -0.113542447011735 67 12079487 12714097 0.31995059840763 3 NA 0.31995059840763 3 NA 634610 NA 7 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CREBRF 5 173056352 173139284 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CREBZF 11 85659708 85682908 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CREG1 1 167529117 167553805 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CREG2 2 101345551 101387595 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRELD1 3 9933822 9945413 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRELD2 22 49918167 49927540 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CREM 10 35126791 35212958 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRH 8 66176382 66178725 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRHBP 5 76952713 76981158 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRHR1 17 45784280 45835828 FALSE 562 -0.239849237512674 51 45395530 46066680 NA 2 NA NA 2 NA 671150 NA 8 14 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRHR2 7 30651943 30700129 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 16 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRIM1 2 36355926 36551135 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 20 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRIP1 14 105486317 105488947 FALSE 474 -0.136925231270881 62 104993000 105529597 0.235629703240478 3 NA 0.235629703240478 3 NA 536597 NA 15 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRIP2 14 105472962 105480170 FALSE 474 -0.136925231270881 62 104993000 105529597 0.235629703240478 3 NA 0.235629703240478 3 NA 536597 NA 15 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRIP3 6 43299710 43308797 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRIPT 2 46616416 46625742 FALSE 59 -0.32871660107588 46 46484402 47170815 NA 2 NA NA 2 NA 686413 NA 11 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRISP1 6 49834257 49877096 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRISP2 6 49692358 49713590 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRISP3 6 49727384 49744437 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRISPLD1 8 74984515 75034558 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRISPLD2 16 84819984 84920768 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRK 17 1420689 1463162 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRKL 22 20917426 20953749 FALSE 697 0.537845744331176 105 20887766 20998561 0.397448435712946 6 NA 0.397448435712946 6 NA 110795 NA 4 20 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRLF1 19 18572220 18607741 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRLF3 17 30769388 30824776 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRLS1 20 6006090 6040053 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRMP1 4 5748084 5893058 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 35 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRNKL1 20 20034368 20056046 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 19 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRNN 1 152409243 152414263 FALSE 30 -1.0065224812273 20 152085351 152410539 0.381347761373373 0 0 0.381347761373373 0 0 325188 0 7 7 0 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CROCC 1 16740273 16972979 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 59 14 TRUE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CROCC2 2 240906330 240993311 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 38 5 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CROT 7 87345681 87399795 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRP 1 159712289 159714589 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRTAC1 10 97865000 98030828 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRTAM 11 122838500 122872639 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 10 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRTAP 3 33113979 33147773 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRTC1 19 18683677 18782333 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRTC2 1 153947669 153958625 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRTC3 15 90529925 90645345 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRX 19 47819779 47843330 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 5 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRY1 12 106991364 107093829 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRY2 11 45847118 45883248 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYAA 21 43169008 43172805 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYAB 11 111908565 111923722 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYBA1 17 29246863 29254494 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYBA2 2 218990189 218993421 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYBA4 22 26621964 26630672 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYBB1 22 26599278 26618088 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYBB2 22 25219522 25231869 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYBB3 22 25199850 25207363 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYBG1 6 106360808 106571978 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 31 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYBG2 1 26321698 26360080 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 29 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYBG3 3 97822040 97944963 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 46 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYGA 2 208160740 208163576 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYGB 2 208142573 208146168 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYGC 2 208128137 208129830 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 4 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYGD 2 208121607 208124501 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 4 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYGN 7 151428835 151440813 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYGS 3 186538441 186546702 FALSE 135 0.383017234579865 101 186047790 186677676 0.397448435712946 5 NA 0.397448435712946 5 NA 629886 NA 9 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYL1 13 20403666 20525873 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYM 16 21238874 21303083 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYZ 1 74705482 74733408 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 8 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CRYZL1 21 33589341 33643926 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CS 12 56271699 56300392 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSAD 12 53157663 53180909 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSAG1 23 152727484 152733735 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSAG3 23 152753921 152760222 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSDC2 22 41560763 41577741 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSDE1 1 114716913 114758676 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSE1L 20 49046246 49096960 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSF1 1 109910242 109930992 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSF1R 5 150053291 150113372 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 30 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSF2 5 132073790 132076170 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSF2RB 22 36913628 36940449 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSF3 17 40015361 40017813 FALSE 551 -0.178633749129299 62 39868328 40193677 0.235629703240478 3 NA 0.235629703240478 3 NA 325349 NA 13 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSF3R 1 36466043 36483278 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSGALNACT1 8 19404161 19758029 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSGALNACT2 10 43138486 43185308 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSH1 17 63894909 63896661 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSH2 17 63872012 63873766 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSHL1 17 63909597 63918838 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSK 15 74782057 74803198 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSKMT 11 62665309 62668496 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSMD1 8 2935353 4994972 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 75 10 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSMD2 1 33513999 34165842 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 85 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSMD3 8 112222928 113437099 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 87 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSN1S1 4 69931081 69946574 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSN2 4 69955256 69961007 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSN3 4 70242588 70251428 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSNK1A1 5 149492197 149551552 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 29 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSNK1A1L 13 37103259 37105664 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSNK1D 17 82239023 82273731 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSNK1E 22 38290691 38318084 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSNK1G1 15 64165517 64356259 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSNK1G2 19 1941149 1981338 FALSE 591 -0.292096165521122 44 1753671 2129102 0.213873728132233 2 0 0.213873728132233 2 0 375431 2 13 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSNK1G3 5 123512099 123617045 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSNK2A1 20 472498 543835 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSNK2A2 16 58157907 58197920 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSNK2A3 11 11351942 11353357 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSNK2B 6 31665236 31670343 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 6 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSPG4 15 75674322 75712848 FALSE 492 -0.226543951235523 57 75468765 76202218 0.158317833115363 3 NA 0.158317833115363 3 NA 733453 NA 10 32 5 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSPG5 3 47562239 47580792 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSPP1 8 67062426 67196263 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 31 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSRNP1 3 39141855 39154562 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSRNP2 12 51061205 51083664 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSRNP3 2 165469647 165689407 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSRP1 1 201483530 201509456 FALSE 36 -0.0702600326825716 67 201211017 202010242 0.31995059840763 3 NA 0.31995059840763 3 NA 799225 NA 14 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSRP2 12 76858715 76879060 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSRP3 11 19182037 19210571 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CST1 20 23747553 23751268 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CST11 20 23450403 23452857 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CST2 20 23823769 23826731 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CST3 20 23626706 23638473 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CST4 20 23685640 23689040 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CST5 20 23875935 23879750 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CST6 11 66011841 66013505 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CST7 20 24949230 24959928 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CST8 20 23491101 23496018 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CST9 20 23602410 23605876 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CST9L 20 23564732 23568749 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSTA 3 122325244 122341972 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSTB 21 43772511 43776445 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSTF1 20 56392371 56406369 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSTF2 23 100820359 100840932 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 15 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSTF2T 10 51695487 51699591 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSTF3 11 33077188 33162371 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CSTL1 20 23439685 23444930 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CT45A1 23 135713453 135723539 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CT47B1 23 120872603 120875929 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CT55 23 135156536 135171398 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CT62 15 71110244 71115500 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CT83 23 116461682 116463003 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTAG2 23 154651972 154653579 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTAGE1 18 22413601 22417915 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 9 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTAGE15 7 143571801 143574387 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 3 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTAGE4 7 144183466 144186053 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 3 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTAGE6 7 143755089 143757696 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTAGE8 7 144266701 144269288 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 3 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTAGE9 6 131708684 131711017 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTBP1 4 1211448 1249953 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTBP2 10 124984317 125161170 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 18 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTBS 1 84549606 84574480 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 9 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTC1 17 8224821 8248095 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 24 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTCF 16 67562407 67639185 TRUE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 23 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTCFL 20 57495966 57525652 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTDNEP1 17 7243591 7252491 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTDP1 18 79679801 79756623 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTDSP1 2 218398256 218405941 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTDSP2 12 57819927 57846739 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTDSPL 3 37861960 37984469 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTDSPL2 15 44427234 44529038 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 12 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTF1 16 30896607 30903560 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTGF 6 131948176 131951373 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTH 1 70411218 70439851 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTHRC1 8 103371515 103382997 FALSE 273 0.0471800530858091 82 102651830 103432781 0.298111653356898 4 NA 0.298111653356898 4 NA 780951 NA 9 6 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTIF 18 48539046 48863217 FALSE 579 -0.642717970948701 29 48041090 48761410 0.39968910724052 1 0 0.39968910724052 1 0 720320 1 2 14 1 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTLA4 2 203867771 203873965 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTNNA1 5 138610967 138935034 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 35 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTNNA2 2 79185231 80648861 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 29 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTNNA3 10 65912518 67696169 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 29 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTNNAL1 9 108942569 109013529 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 19 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTNNB1 3 41194741 41260096 FALSE 117 0.540932046993509 105 41194895 41246976 0.397448435712946 6 NA 0.397448435712946 6 NA 52081 NA 2 37 0 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTNNBIP1 1 9848276 9910336 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 3 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTNNBL1 20 37693955 37872129 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTNND1 11 57753243 57819546 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 23 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTNND2 5 10971840 11904043 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 26 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTNS 17 3636468 3661542 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTPS1 1 40979335 41012565 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTPS2 23 16588003 16712936 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 19 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTR9 11 10750987 10801625 TRUE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 34 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTRB1 16 75219000 75226338 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTRB2 16 75204096 75207185 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTRC 1 15438439 15449242 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTRL 16 67927640 67932414 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSA 20 45890144 45898820 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSB 8 11842524 11869448 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSC 11 88293592 88337787 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSD 11 1752752 1764573 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSE 1 206009264 206023909 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSF 11 66563463 66568841 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSG 14 24573522 24576260 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 6 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSH 15 78921058 78949574 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSK 1 150796208 150808323 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSL 9 87725519 87731393 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSO 4 155924118 155953917 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSS 1 150730196 150765957 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSV 9 97029679 97039643 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSW 11 65879809 65883741 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTSZ 20 58995185 59007247 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTTN 11 70398404 70436584 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTTNBP2 7 117710651 117874139 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 32 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTTNBP2NL 1 112396181 112463456 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTU1 19 51097606 51108370 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTU2 16 88706463 88715386 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTXN1 19 7924485 7926166 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTXN2 15 48178122 48203756 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTXN3 5 127649044 127658630 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CTXND1 15 80195484 80252213 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 1 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUBN 10 16823966 17129817 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 69 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUEDC1 17 57861243 57955323 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUEDC2 10 102423245 102432661 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUL1 7 148697914 148801036 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 21 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUL2 10 35008551 35090642 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUL3 2 224470150 224585397 FALSE 103 0.153439494900873 86 223878656 225408986 0.360033220093454 4 NA 0.360033220093454 4 NA 1530330 NA 8 38 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUL4A 13 113208193 113267108 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUL4B 23 120524609 120575794 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 24 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUL5 11 108008733 108107776 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 19 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUL7 6 43037617 43053945 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUL9 6 43182175 43224587 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 48 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUTA 6 33416442 33418317 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUTC 10 99702558 99756134 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUX1 7 101815904 102283958 TRUE 244 0.0976303183873096 82 101622071 102111780 0.298111653356898 4 NA 0.298111653356898 4 NA 489709 NA 2 80 12 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUX2 12 111034024 111350554 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 31 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CUZD1 10 122832149 122850793 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 14 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CWC15 11 94962622 94973612 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CWC22 2 179944876 180007113 FALSE 94 0.355754312996103 101 179443289 181538825 0.397448435712946 5 NA 0.397448435712946 5 NA 2095536 NA 5 22 3 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CWC25 17 38800434 38825481 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CWC27 5 64768930 65018763 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 16 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CWF19L1 10 100232298 100267680 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CWF19L2 11 107326345 107457844 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CWH43 4 48986247 49062081 FALSE 145 -0.255465332866297 51 48565705 52745352 NA 2 NA NA 2 NA 4179647 NA 10 17 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CX3CL1 16 57372458 57385048 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CX3CR1 3 39263494 39281735 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXADR 21 17512382 17593579 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCL1 4 73869393 73871242 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCL10 4 76021117 76023497 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCL11 4 76033682 76041415 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 4 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCL12 10 44370165 44386493 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCL13 4 77511753 77611834 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCL14 5 135570679 135579279 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCL16 17 4733526 4739922 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 6 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCL17 19 42428288 42443048 FALSE 655 -0.303862148002883 46 42297355 42428877 NA 2 NA NA 2 NA 131522 NA 7 4 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCL2 4 74097035 74099293 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCL3 4 74036589 74038807 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCL5 4 73995642 73998779 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCL6 4 73836497 73849064 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCL8 4 73740506 73743716 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCL9 4 76001275 76007488 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCR1 2 218162845 218166995 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCR2 2 218125289 218137253 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCR3 23 71615916 71618517 FALSE 715 -0.659931446909816 29 71291831 71671196 0.39968910724052 0 NA 0.39968910724052 0 0 379365 0 7 6 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCR4 2 136114349 136118165 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 13 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCR5 11 118883766 118897799 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXCR6 3 45940933 45948353 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXXC1 18 50282343 50288304 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXXC4 4 104468312 104494901 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXXC5 5 139647299 139683882 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXorf21 23 30558824 30577844 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXorf36 23 45148374 45200901 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 10 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXorf38 23 40626921 40647554 FALSE 709 -0.360421027642709 43 40084126 41229701 1 1 0 1 1 0 1145575 1 6 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXorf40A 23 149540355 149550510 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXorf40B 23 149929527 149938811 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXorf56 23 119538149 119565408 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXorf57 23 106611930 106679442 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXorf58 23 23907801 23939509 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXorf65 23 71103889 71106788 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 6 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXorf66 23 139955725 139965520 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CXorf67 23 51406915 51408843 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYB561 17 63432304 63446378 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYB561A3 11 61348745 61362299 FALSE 351 -0.00270858795298945 77 61249834 61434618 0.252310779181821 4 NA 0.252310779181821 4 NA 184784 NA 10 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYB561D1 1 109494052 109502932 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYB561D2 3 50350695 50358460 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYB5A 18 74250847 74292016 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYB5B 16 69424525 69466266 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYB5D1 17 7857746 7862282 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYB5D2 17 4143168 4187310 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 20 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYB5R1 1 202961869 202967280 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYB5R2 11 7665100 7677222 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYB5R3 22 42617840 42649568 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYB5R4 6 83859643 83967424 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYB5RL 1 54169651 54200036 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYBA 16 88643283 88651152 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYBB 23 37780011 37813461 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 13 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYBC1 17 82442589 82450829 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYBRD1 2 171522247 171558133 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 6 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYC1 8 144095027 144097525 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYCS 7 25120091 25125361 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 2 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYFIP1 15 22867052 22981063 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 34 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYFIP2 5 157266079 157395595 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 35 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYGB 17 76527356 76551175 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYHR1 8 144449582 144465677 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYLC1 23 83861126 83886699 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYLC2 9 102995311 103018488 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 7 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYLD 16 50742050 50801935 TRUE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP11A1 15 74337759 74367740 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP11B1 8 142872356 142879846 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 10 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP11B2 8 142910559 142917843 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 10 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP17A1 10 102830531 102837533 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP19A1 15 51208057 51338610 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 28 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP1A1 15 74719542 74725610 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP1A2 15 74748844 74756202 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP1B1 2 38066973 38109902 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 9 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP20A1 2 203238940 203305611 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP21A2 6 32038265 32041670 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 10 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP24A1 20 54153449 54173973 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP26A1 10 93073475 93077890 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP26B1 2 72129238 72148038 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP26C1 10 93060808 93069536 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP27A1 2 218781749 218815293 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP27B1 12 57762334 57768986 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP27C1 2 127184120 127220078 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2A13 19 41088472 41096195 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2A6 19 40843538 40850447 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2A7 19 40875439 40882752 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 9 7 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2B6 19 40991250 41018398 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2C18 10 94683621 94736190 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2C19 10 94762681 94853205 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2C8 10 95036772 95069497 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2C9 10 94938658 94989391 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2D6 22 42126499 42130906 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2E1 10 133520406 133561220 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 21 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2F1 19 41114432 41128366 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2J2 1 59893308 59926790 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2R1 11 14877440 14892252 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2S1 19 41193049 41207539 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 11 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2U1 4 107931369 107953457 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP2W1 7 983199 989640 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 11 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP39A1 6 46549580 46652830 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP3A4 7 99756960 99784265 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP3A43 7 99828013 99866102 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP3A5 7 99648194 99680026 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 16 0 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP3A7 7 99684957 99735196 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP3A7-CYP3A51P 7 99685226 99735093 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP46A1 14 99684304 99727301 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP4A11 1 46929177 46941484 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP4A22 1 47137435 47149741 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP4B1 1 46757838 46819413 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP4F11 19 15912367 15934867 FALSE 627 -0.490607499224798 35 15728649 16234395 0.252021069663427 1 0 0.252021069663427 1 0 505746 1 13 14 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP4F12 19 15672757 15697174 FALSE 626 0.131420245867563 86 15354999 15728497 0.360033220093454 4 NA 0.360033220093454 4 NA 373498 NA 10 13 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP4F2 19 15878023 15898120 FALSE 627 -0.490607499224798 35 15728649 16234395 0.252021069663427 1 0 0.252021069663427 1 0 505746 1 13 14 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP4F22 19 15508493 15552317 FALSE 626 0.131420245867563 86 15354999 15728497 0.360033220093454 4 NA 0.360033220093454 4 NA 373498 NA 10 14 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP4F3 19 15640897 15662825 FALSE 626 0.131420245867563 86 15354999 15728497 0.360033220093454 4 NA 0.360033220093454 4 NA 373498 NA 10 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP4F8 19 15615218 15630638 FALSE 626 0.131420245867563 86 15354999 15728497 0.360033220093454 4 NA 0.360033220093454 4 NA 373498 NA 10 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP4V2 4 186191520 186213456 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 11 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP4X1 1 47023568 47050751 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP4Z1 1 47067488 47118319 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP51A1 7 92112151 92134803 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP7A1 8 58490178 58500236 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP7B1 8 64587763 64798761 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYP8B1 3 42856005 42876165 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYR61 1 85580761 85583962 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYREN 7 135092363 135170795 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYS1 2 10056780 10080944 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYSLTR1 23 78271464 78327691 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYSLTR2 13 48653711 48711226 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYSRT1 9 137224635 137226311 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYSTM1 5 140174642 140282052 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYTH1 17 78674048 78782297 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 14 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYTH2 19 48469032 48482314 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYTH3 7 6161776 6272644 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYTH4 22 37282027 37315345 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 13 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYTIP 2 157414619 157488961 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYTL1 4 5014586 5019472 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 4 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 CYYR1 21 26466209 26573284 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 D2HGDH 2 241734579 241768816 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 12 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAAM1 14 59188646 59371405 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 27 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAAM2 6 39792298 39904877 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 27 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAB1 1 56994778 58546734 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 25 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAB2 5 39371675 39462300 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAB2IP 9 121567057 121785530 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 22 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DACH1 13 71437966 71867192 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DACH2 23 86148458 86832604 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DACT1 14 58633967 58648321 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 12 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DACT2 6 168292830 168319754 FALSE 230 -0.0331467567986683 71 168062029 170285618 0.212208033369562 4 0 0.212208033369562 4 0 2223589 4 11 13 2 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DACT3 19 46647612 46661138 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAD1 14 22564905 22589269 FALSE 447 -0.170207348033168 62 21570031 22633768 0.235629703240478 3 NA 0.235629703240478 3 NA 1063737 NA 7 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAG1 3 49468703 49535618 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAGLA 11 61680433 61747001 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 24 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAGLB 7 6409126 6484190 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DALRD3 3 49015488 49022293 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAND5 19 12965159 12974762 FALSE 620 0.246971120530574 97 12876151 13116391 0.39968910724052 4 NA 0.39968910724052 4 NA 240240 NA 12 3 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAO 12 108858932 108901043 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAOA 13 105465867 105491034 FALSE 441 -0.133025597356164 67 102840913 109206723 0.31995059840763 3 NA 0.31995059840763 3 NA 6365810 NA 12 5 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAP 5 10679230 10761272 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAP3 1 155687960 155739010 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAPK1 9 87497228 87708633 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 29 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAPK2 15 63907036 64072033 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAPK3 19 3958453 3971123 FALSE 599 0.276554850290338 97 3959289 4175087 0.39968910724052 4 NA 0.39968910724052 4 NA 215798 NA 7 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAPL1 2 158795317 158862781 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAPP1 4 99816833 99870154 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DARS 2 135906677 135986100 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DARS2 1 173824568 173858808 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAW1 2 227871054 227924344 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAXX 6 33318558 33323016 TRUE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAZAP1 19 1407569 1435687 FALSE 589 -0.44786516347233 39 1398963 1609436 NA 2 NA NA 2 NA 210473 NA 14 12 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAZAP2 12 51238292 51271362 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DAZL 3 16586792 16670306 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DBF4 7 87876216 87909541 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DBF4B 17 44708608 44752264 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 17 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DBH 9 133635348 133659344 FALSE 306 -0.140346870455269 62 133636322 134157948 0.235629703240478 3 NA 0.235629703240478 3 NA 521626 NA 6 16 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DBI 2 119366921 119372560 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 7 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DBN1 5 177456608 177474401 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 17 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DBNDD1 16 90004865 90020128 FALSE 535 0.126990432456591 86 89733549 90075852 0.360033220093454 4 NA 0.360033220093454 4 NA 342303 NA 12 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DBNDD2 20 45406057 45410610 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DBNL 7 44044640 44069456 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DBP 19 48630030 48637438 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DBR1 3 138161012 138174949 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 11 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DBT 1 100186919 100249834 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DBX1 11 20156155 20160613 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DBX2 12 45014672 45051099 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF1 3 51395867 51500002 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 28 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF10 9 37800502 37867666 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF11 14 24114195 24125242 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 15 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF12 9 34086387 34127399 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF12L1 23 126549383 126552851 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF12L2 23 126163499 126166097 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF13 8 103414714 103443453 FALSE 273 0.0471800530858091 82 102651830 103432781 0.298111653356898 4 NA 0.298111653356898 4 NA 780951 NA 9 13 3 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF15 19 13952492 13961449 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 14 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF16 4 17800655 17810758 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF17 2 171434217 171485052 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 14 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF4 14 72926332 72959703 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 13 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF4L1 4 41981696 41986467 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF4L2 8 87870743 87874068 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF5 14 69050881 69153150 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 17 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF6 1 167935783 168075843 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 24 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF7 17 63550461 63594266 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF8 1 160215715 160262531 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF8L1 23 27977993 27981449 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAF8L2 23 27590382 27748821 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCAKD 17 45023340 45061109 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCANP1 5 135444214 135447348 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCBLD1 6 117453817 117569858 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 17 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCBLD2 3 98795941 98901689 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 19 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCC 18 52340172 53535903 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 31 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCD 12 54644591 54648493 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCDC1 11 30830369 31369810 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 37 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCDC2 6 24171756 24358052 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 13 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCDC2B 1 32209094 32216196 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCDC2C 2 3703592 3847411 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 12 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCHS1 11 6621323 6655854 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 47 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCHS2 4 154231742 154495570 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 58 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCK 4 70992538 71030914 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCLK1 13 35768652 36131306 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 21 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCLK2 4 150078274 150257457 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCLK3 3 36712422 36764349 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCLRE1A 10 113834725 113854383 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCLRE1B 1 113905141 113914086 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCLRE1C 10 14897359 14954432 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCN 12 91140484 91183123 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 8 0 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCP1A 3 53283428 53347610 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCP1B 12 1946054 2004535 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCP2 5 112976702 113020970 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCPS 11 126303752 126345754 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCST1 1 155033824 155050930 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCST2 1 155018520 155033781 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCSTAMP 8 104339087 104356689 FALSE 274 -0.276254726456932 51 103435783 105801444 NA 2 NA NA 2 NA 2365661 NA 7 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCT 13 94436808 94479682 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCTD 4 182890060 182917936 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCTN1 2 74361154 74392087 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 33 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCTN2 12 57530102 57547331 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCTN3 9 34613545 34620523 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCTN4 5 150708440 150759109 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCTN5 16 23641392 23677455 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCTN6 8 30156297 30183640 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCTPP1 16 30423619 30430075 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCUN1D1 3 182938074 182985953 FALSE 131 1.08926468364454 116 182938640 182985861 0.397448435712946 10 NA 0.397448435712946 10 NA 47221 NA 1 35 4 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCUN1D2 13 113455819 113490952 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCUN1D3 16 20854925 20900384 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCUN1D4 4 51843000 51916837 FALSE 145 -0.255465332866297 51 48565705 52745352 NA 2 NA NA 2 NA 4179647 NA 10 12 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCUN1D5 11 103062076 103092215 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCX 23 111293779 111412429 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DCXR 17 82035136 82037732 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 7 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDA1 19 17309518 17323301 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 5 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDAH1 1 85318481 85578363 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDAH2 6 31727038 31730617 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDB1 11 61299451 61342596 FALSE 351 -0.00270858795298945 77 61249834 61434618 0.252310779181821 4 NA 0.252310779181821 4 NA 184784 NA 10 34 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDB2 11 47214465 47239240 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDC 7 50458436 50565457 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDHD1 14 53036745 53153282 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 19 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDHD2 8 38225218 38275558 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 45 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDI1 11 104036580 104039188 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDI2 1 15617500 15669044 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDIAS 11 82899975 82958277 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDIT3 12 57516588 57521737 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDIT4 10 72273920 72276036 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDIT4L 4 100185870 100190782 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDN 12 48995149 48999309 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDO 6 110391771 110415562 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDOST 1 20651767 20661544 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDR1 6 30876421 30900156 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 20 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDR2 1 162631373 162787400 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 60 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDRGK1 20 3190350 3204685 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDT 22 23971365 23979828 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDTL 22 23966901 23972532 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX1 2 15591178 15631111 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 25 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX10 11 108665025 108940930 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX11 12 31073845 31104791 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 27 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX17 22 38483440 38507660 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX18 2 117814650 117832379 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 15 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX19A 16 70346829 70373383 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX19B 16 70289663 70335283 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX20 1 111755245 111768016 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX21 10 68956128 68985073 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX23 12 48829764 48852842 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX24 14 94048291 94081245 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX25 11 125903348 125943702 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX27 20 49219295 49244077 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX28 16 68021274 68023442 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX31 9 132592997 132670401 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 26 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX39A 19 14408819 14419383 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 9 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX39B 6 31530219 31542448 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX3X 23 41333284 41364472 TRUE 710 0.249161924262309 97 41230515 41350205 0.39968910724052 2 NA 0.39968910724052 2 NA 119690 NA 2 38 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX4 5 55738017 55817157 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX41 5 177511577 177517469 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 18 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX42 17 63773603 63819317 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX43 6 73394748 73417569 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX46 5 134758771 134855133 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX47 12 12813316 12829981 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX49 19 18919675 18928633 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX5 17 64499616 64508199 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX50 10 68901278 68946847 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX51 12 132136594 132144335 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX52 17 37609739 37643464 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX53 23 22999961 23003589 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX54 12 113157174 113185479 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX55 12 123602077 123620941 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 15 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX56 7 44565417 44575051 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX58 9 32455705 32526324 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 20 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX59 1 200623896 200669969 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX6 11 118747766 118791149 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX60 4 168216293 168318807 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 39 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DDX60L 4 168356735 168537786 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 44 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEAF1 11 644233 706715 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 20 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEC1 9 114850968 115402644 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 53 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DECR1 8 90001405 90052092 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DECR2 16 401826 412487 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEDD 1 161120974 161132688 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEDD2 19 42198598 42220140 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEF6 6 35297852 35321771 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEF8 16 89947925 89968060 FALSE 535 0.126990432456591 86 89733549 90075852 0.360033220093454 4 NA 0.360033220093454 4 NA 342303 NA 12 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFA3 8 7015869 7018301 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFA4 8 6935822 6938338 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFA5 8 7055304 7056734 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFA6 8 6924693 6926076 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB1 8 6870575 6878022 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 2 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB104A 8 7836471 7841242 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 2 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB105A 8 7821966 7823889 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB106A 8 7825172 7829053 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 1 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB106B 8 7482504 7486400 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 1 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB107A 8 7811720 7815716 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 1 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB107B 8 7495846 7509311 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 1 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB108B 11 71833200 71837710 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB110 6 50009138 50021981 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB112 6 50043575 50048651 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB113 6 49968677 49969625 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB114 6 49960249 49964105 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB115 20 31257664 31259632 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB116 20 31303212 31308585 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB118 20 31368618 31373923 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB119 20 31377164 31390603 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB121 20 31404845 31412838 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB123 20 31440519 31450257 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB124 20 31465506 31476757 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB125 20 87250 97094 FALSE 684 -0.601566453598946 32 87678 284118 0.364170154096734 1 0 0.364170154096734 1 0 196440 1 7 3 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB126 20 142369 145751 FALSE 684 -0.601566453598946 32 87678 284118 0.364170154096734 1 0 0.364170154096734 1 0 196440 1 7 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB127 20 157470 159163 FALSE 684 -0.601566453598946 32 87678 284118 0.364170154096734 1 0 0.364170154096734 1 0 196440 1 7 3 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB128 20 187853 189681 FALSE 684 -0.601566453598946 32 87678 284118 0.364170154096734 1 0 0.364170154096734 1 0 196440 1 7 3 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB129 20 227258 229886 FALSE 684 -0.601566453598946 32 87678 284118 0.364170154096734 1 0 0.364170154096734 1 0 196440 1 7 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB131A 4 9444534 9450514 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB131B 11 71878453 71884561 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB132 20 257736 261096 FALSE 684 -0.601566453598946 32 87678 284118 0.364170154096734 1 0 0.364170154096734 1 0 196440 1 7 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB133 6 49946021 49950265 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB134 8 11993174 11996312 FALSE 259 -1.47337286372647 13 11974570 12191811 0.39968910724052 0 0 0.39968910724052 0 0 217241 0 8 2 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB135 8 11982321 11984590 FALSE 259 -1.47337286372647 13 11974570 12191811 0.39968910724052 0 0 0.39968910724052 0 0 217241 0 8 2 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB136 8 11973937 11974599 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 2 0 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB4A 8 7894629 7896711 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 1 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEFB4B 8 7414860 7416863 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 2 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEGS1 1 224175756 224193441 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEGS2 14 100143957 100160163 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEK 6 18223868 18264823 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 10 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DELE1 5 141923808 141942047 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENND1A 9 123379654 123930152 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 31 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENND1B 1 197504748 197775696 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 26 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENND1C 19 6467207 6482557 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 22 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENND2A 7 140518420 140673993 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 25 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENND2C 1 114582848 114670422 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENND2D 1 111187174 111204535 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENND3 8 141117278 141195808 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 28 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENND4A 15 65658046 65792293 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 39 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENND4B 1 153929501 153946696 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 33 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENND4C 9 19230435 19373545 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 38 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENND5A 11 9138825 9265390 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENND5B 12 31382223 31591097 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 27 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENND6A 3 57625457 57693089 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENND6B 22 50309030 50327060 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DENR 12 122752774 122771064 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEPDC1 1 68474152 68497221 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEPDC1B 5 60596912 60700190 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEPDC4 12 100203669 100267079 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 21 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEPDC5 22 31753867 31908033 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 45 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEPDC7 11 33015864 33033582 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEPP1 10 44970981 44978810 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEPTOR 8 119873717 120050913 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DERA 12 15911172 16037282 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DERL1 8 123013164 123042423 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DERL2 17 5471251 5486811 FALSE 538 -0.524547519785345 34 5395000 5521780 0.312402751065481 1 0 0.312402751065481 1 0 126780 1 7 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DERL3 22 23834503 23839128 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DES 2 219418377 219426739 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DESI1 22 41598028 41621096 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DESI2 1 244652935 244709033 FALSE 44 0.117466813329847 86 243659450 245702541 0.360033220093454 4 NA 0.360033220093454 4 NA 2043091 NA 11 5 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DET1 15 88494440 88546675 FALSE 497 0.0345658149407989 77 88130833 88530744 0.252310779181821 4 NA 0.252310779181821 4 NA 399911 NA 5 9 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEUP1 11 93329971 93438487 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 14 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DEXI 16 10928891 10942460 FALSE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 2 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DFFA 1 10456522 10472526 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 6 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DFFB 1 3857267 3885429 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 8 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGAT1 8 144314584 144326910 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGAT2 11 75759512 75801535 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGAT2L6 23 70177483 70205545 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 8 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGCR2 22 19036282 19122454 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 14 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGCR6 22 18906028 18914238 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGCR6L 22 20314276 20320080 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGCR8 22 20080232 20111877 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 16 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGKA 12 55927319 55954027 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGKB 7 14145049 14974777 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 26 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGKD 2 233354507 233472104 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 31 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGKE 17 56834099 56869567 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGKG 3 186105668 186362237 FALSE 135 0.383017234579865 101 186047790 186677676 0.397448435712946 5 NA 0.397448435712946 5 NA 629886 NA 9 27 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGKH 13 42040036 42256578 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 32 0 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGKI 7 137381037 137847092 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 36 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGKK 23 50365409 50470738 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 31 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGKQ 4 958887 986895 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 25 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGKZ 11 46332905 46380554 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 36 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGLUCY 14 91060333 91225632 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DGUOK 2 73926826 73958961 FALSE 66 -0.131768028115121 67 73901291 73958187 0.31995059840763 3 NA 0.31995059840763 3 NA 56896 NA 2 8 1 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHCR24 1 54849627 54887271 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHCR7 11 71428193 71452868 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHDDS 1 26432282 26471294 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHDH 19 48933682 48944969 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHFR 5 80626228 80654983 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 10 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHFR2 3 94047836 94063389 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHH 12 49086656 49094819 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHODH 16 72008588 72027664 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 12 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHPS 19 12675717 12681902 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHRS1 14 24290598 24299833 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 8 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHRS11 17 36591798 36600806 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHRS12 13 51767993 51804157 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHRS13 17 28897781 28903071 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHRS2 14 23630115 23645639 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHRS3 1 12567910 12617731 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHRS4 14 23953586 23969279 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 7 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHRS4L2 14 23969874 24006408 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 7 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHRS7 14 60144120 60169856 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHRS7B 17 21123364 21193265 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHRS7C 17 9771434 9791297 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHRS9 2 169064789 169096167 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHTKD1 10 12068972 12123225 FALSE 314 0.0797787605968275 82 10796933 12825599 0.298111653356898 4 NA 0.298111653356898 4 NA 2028666 NA 10 20 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX15 4 24517441 24584550 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX16 6 30653119 30673037 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 22 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX29 5 55256245 55307722 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 30 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX30 3 47802909 47850195 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 26 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX32 10 125836337 125896436 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 16 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX33 17 5440912 5469060 FALSE 538 -0.524547519785345 34 5395000 5521780 0.312402751065481 1 0 0.312402751065481 1 0 126780 1 7 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX34 19 47349281 47382704 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 22 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX35 20 38962299 39039723 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX36 3 154272546 154324497 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 27 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX37 12 124946825 124989122 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 29 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX38 16 72093562 72112912 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 28 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX40 17 59565525 59608345 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 17 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX57 2 38797729 38875934 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 27 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX58 17 42101404 42112733 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 14 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX8 17 43483865 43610338 FALSE 558 -0.437962745946443 39 43180803 43527818 NA 2 NA NA 2 NA 347015 NA 5 81 7 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DHX9 1 182839369 182887751 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIABLO 12 122207662 122227534 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIAPH1 5 141515016 141619055 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 31 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIAPH2 23 96684663 97604997 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 34 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIAPH3 13 59665583 60163987 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 31 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DICER1 14 95086228 95158010 TRUE 463 -0.464555355125233 39 94463259 95086236 NA 2 NA NA 2 NA 622977 NA 8 72 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIDO1 20 62877738 62937952 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 33 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIMT1 5 62387254 62403939 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIO1 1 53891239 53911086 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIO2 14 80197527 80387757 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIO3 14 101561351 101563452 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIP2A 21 46458899 46569852 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 40 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIP2B 12 50504985 50748667 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 43 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIP2C 10 274190 689668 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 47 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIRAS1 19 2714567 2721418 FALSE 594 0.361599717529754 101 2405415 2717768 0.397448435712946 5 NA 0.397448435712946 5 NA 312353 NA 6 3 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIRAS2 9 90609832 90643105 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIRAS3 1 68045896 68051631 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIRC1 2 188733738 188790104 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIRC2 3 122794795 122881139 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIS3 13 72752169 72782096 TRUE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 47 2 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIS3L 15 66293217 66333898 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIS3L2 2 231961245 232344350 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DISC1 1 231626815 232041272 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DISP1 1 222872271 223005995 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DISP2 15 40358235 40378639 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 21 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DISP3 1 11479166 11537584 FALSE 10 -0.472587818930969 39 11046896 11690703 NA 2 NA NA 2 NA 643807 NA 11 28 7 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DIXDC1 11 111927144 112022584 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DKC1 23 154762742 154777689 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 15 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DKK1 10 52314296 52318042 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DKK2 4 106921802 107283806 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DKK3 11 11963106 12009769 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DKK4 8 42374068 42377232 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DKKL1 19 49361783 49375116 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 6 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLAT 11 112024814 112064390 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLC1 8 13083361 13604610 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 34 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLD 7 107890970 107931730 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 20 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLEC1 3 38039205 38124025 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 42 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLEU7 13 50711008 50843939 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 4 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLG1 3 197042560 197299300 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 28 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLG2 11 83455012 85627922 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 33 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLG3 23 70444861 70505490 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 24 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLG4 17 7187169 7219841 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 23 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLG5 10 77790791 77926526 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 39 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLGAP1 18 3496032 4455335 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLGAP2 8 737596 1708474 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 22 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLGAP3 1 34865436 34929585 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLGAP4 20 36306336 36528637 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLGAP5 14 55148112 55191678 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 20 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLK1 14 100725705 100738224 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLK2 6 43450352 43456632 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLL1 6 170282206 170306565 FALSE 230 -0.0331467567986683 71 168062029 170285618 0.212208033369562 4 0 0.212208033369562 4 0 2223589 4 11 17 2 TRUE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLL3 19 39498895 39508481 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLL4 15 40929333 40939073 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLST 14 74881891 74903745 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 15 4 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLX1 2 172084740 172089677 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLX2 2 172099439 172102900 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLX3 17 49990005 49995224 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLX4 17 49968970 49974959 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLX5 7 97020392 97024950 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DLX6 7 97005548 97011039 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMAC1 9 7796490 7888380 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMAC2 19 41431318 41440717 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 7 3 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMAP1 1 44213455 44220681 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMBT1 10 122560665 122643736 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 54 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMBX1 1 46506996 46514226 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMC1 22 38518949 38570286 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMD 23 31097677 33339441 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 93 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMGDH 5 78997606 79236038 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMKN 19 35497220 35513658 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 23 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMP1 4 87650307 87664361 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMPK 19 45769717 45782552 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMRT1 9 841690 969090 FALSE 281 -0.150462187040168 62 711236 2838509 0.235629703240478 3 NA 0.235629703240478 3 NA 2127273 NA 8 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMRT2 9 1049858 1057552 FALSE 281 -0.150462187040168 62 711236 2838509 0.235629703240478 3 NA 0.235629703240478 3 NA 2127273 NA 8 10 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMRT3 9 976964 991731 FALSE 281 -0.150462187040168 62 711236 2838509 0.235629703240478 3 NA 0.235629703240478 3 NA 2127273 NA 8 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMRTA1 9 22446841 22455740 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMRTA2 1 50417550 50423500 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMRTB1 1 53459399 53467488 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMRTC1 23 72872025 72943814 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 2 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMRTC1B 23 72777009 72848802 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 1 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMRTC2 19 41844743 41852333 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 8 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMTF1 7 87152361 87196337 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMTN 8 22048995 22082527 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 15 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMWD 19 45782947 45792802 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMXL1 5 119037772 119249138 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 66 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DMXL2 15 51447711 51622833 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 58 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNA2 10 68414064 68472121 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 21 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAAF1 16 84145287 84178767 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAAF2 14 49625174 49635230 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 10 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAAF3 19 55158661 55166722 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAAF4 15 55410525 55508234 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAAF5 7 726701 786475 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 15 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAH1 3 52316319 52400491 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 89 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAH10 12 123762188 123936206 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 86 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAH11 7 21543215 21901839 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 99 6 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAH12 3 57293699 57544344 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 63 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAH14 1 224896262 225399292 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 97 9 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAH17 17 78423697 78577394 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 91 12 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAH2 17 7717354 7833744 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 93 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAH3 16 20933111 21159441 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 77 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAH5 5 13690331 13944543 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 90 10 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAH6 2 84516455 84819589 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 83 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAH7 2 195737703 196068812 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 79 10 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAH8 6 38715341 39030529 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 104 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAH9 17 11598431 11969748 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 88 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAI1 9 34457414 34520989 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 22 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAI2 17 74274247 74314884 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 13 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJA1 9 33025211 33039907 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJA2 16 46955362 46973788 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJA3 16 4425805 4456775 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJA4 15 78264086 78282196 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJB1 19 14514770 14529770 FALSE 623 1.40086508861985 122 14514851 14560233 0.397448435712946 13 NA 0.397448435712946 13 NA 45382 NA 2 20 1 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJB11 3 186567403 186585800 FALSE 135 0.383017234579865 101 186047790 186677676 0.397448435712946 5 NA 0.397448435712946 5 NA 629886 NA 9 11 4 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJB12 10 72332830 72355230 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJB13 11 73950319 73970366 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJB14 4 99896248 99946726 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJB2 2 219279267 219286900 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJB4 1 77979175 78017964 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJB5 9 34989641 34998900 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJB6 7 157335381 157417439 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJB7 22 40859549 40862126 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJB8 3 128462439 128467248 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJB9 7 108569568 108574850 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC1 10 21756537 22003769 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC10 2 182716041 182794464 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 22 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC11 1 6634168 6701924 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC12 10 67796665 67838166 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC13 3 132417526 132539032 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 56 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC14 12 55820960 55830824 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC15 13 43023203 43114224 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC16 1 15526813 15592379 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 24 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC17 15 40765155 40807478 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC18 5 139408588 139444491 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC19 3 180983709 180989774 FALSE 128 0.146934569885818 86 179242975 181712000 0.360033220093454 4 NA 0.360033220093454 4 NA 2469025 NA 14 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC2 7 103312474 103344873 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC21 5 34929559 34958964 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 14 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC22 12 49346917 49357546 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC24 11 31369840 31431849 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC25 9 111631352 111654351 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 6 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC25-GNG10 9 111631386 111670229 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC27 2 24943636 24972094 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC28 21 33485530 33491720 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC3 13 95677139 95794989 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC30 7 73680969 73683453 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC4 11 64230278 64234286 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC5 20 63895182 63936031 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC5B 8 66021560 66100526 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC5G 2 27275421 27281499 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC6 1 65248219 65415869 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 22 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC7 17 41976433 42021376 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 14 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC8 1 28199456 28233025 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAJC9 10 73183362 73248862 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 16 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAL1 14 73644875 73703732 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 8 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNAL4 22 38778508 38794198 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNALI1 1 37556919 37566857 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNASE1 16 3611728 3680143 FALSE 514 0.622835549580881 107 3565001 3966951 0.397448435712946 7 NA 0.397448435712946 7 NA 401950 NA 6 23 2 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNASE1L1 23 154401238 154412112 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNASE1L2 16 2235816 2238711 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNASE1L3 3 58192257 58214697 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNASE2 19 12875211 12881468 FALSE 620 0.246971120530574 97 12876151 13116391 0.39968910724052 4 NA 0.39968910724052 4 NA 240240 NA 12 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNASE2B 1 84398532 84415018 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DND1 5 140670794 140673586 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNER 2 229357629 229714558 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNHD1 11 6497260 6593758 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 71 12 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNLZ 9 136359480 136363789 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 5 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNM1 9 128191655 128255248 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 28 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNM1L 12 32679200 32745650 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNM2 19 10718079 10833488 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 27 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNM3 1 171841498 172418466 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNMBP 10 99875577 100009919 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 32 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNMT1 19 10133345 10231286 FALSE 612 -0.2463765322708 51 9849131 10133617 NA 2 NA NA 2 NA 284486 NA 11 60 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNMT3A 2 25227855 25342590 TRUE 55 0.833702415306687 113 25164718 25241541 0.397448435712946 8 NA 0.397448435712946 8 NA 76823 NA 2 62 6 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNMT3B 20 32762385 32809356 TRUE 689 0.316430543791893 99 32330098 32885548 0.361681390833996 5 NA 0.361681390833996 5 NA 555450 NA 9 34 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNMT3L 21 44246339 44262216 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNPEP 2 219373527 219400022 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNPH1 6 43225629 43229484 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNTT 10 96304396 96338564 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNTTIP1 20 45791937 45811427 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DNTTIP2 1 93866283 93879918 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 13 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOC2A 16 30005509 30023270 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOC2B 17 142789 181636 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOCK1 10 126905409 127452517 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 59 9 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOCK10 2 224765090 225042445 FALSE 103 0.153439494900873 86 223878656 225408986 0.360033220093454 4 NA 0.360033220093454 4 NA 1530330 NA 8 56 6 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOCK11 23 118495898 118686163 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 55 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOCK2 5 169637247 170083382 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 59 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOCK3 3 50675241 51384198 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 53 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOCK4 7 111726110 112206411 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 55 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOCK5 8 25184723 25418082 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 52 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOCK6 19 11199295 11262481 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 56 10 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOCK7 1 62454298 62688368 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 60 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOCK8 9 214854 465259 FALSE 280 0.0485868805897004 82 214810 710818 0.298111653356898 4 NA 0.298111653356898 4 NA 496008 NA 3 50 10 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOCK9 13 98793429 99086625 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 58 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOHH 19 3490822 3500940 FALSE 597 -0.316308503877712 46 3155904 3648696 NA 2 NA NA 2 NA 492792 NA 16 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOK1 2 74549026 74557554 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 14 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOK2 8 21908873 21913860 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOK3 5 177501907 177511274 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOK4 16 57471922 57487327 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOK5 20 54475597 54651171 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOK6 18 69401055 69849087 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOK7 4 3463311 3501473 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 13 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOLK 9 128945530 128947619 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOLPP1 9 129081100 129090438 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DONSON 21 33559542 33588708 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOP1A 6 83067666 83171350 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 53 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOP1B 21 36156782 36294274 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 46 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DOT1L 19 2164149 2232578 FALSE 592 0.687323255861917 111 2129361 2232529 0.397448435712946 7 NA 0.397448435712946 7 NA 103168 NA 3 51 1 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPAGT1 11 119096503 119108331 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 11 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPCD 10 101570560 101609668 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPEP1 16 89613308 89638456 FALSE 534 -0.234744649087081 51 89587069 89729295 NA 2 NA NA 2 NA 142226 NA 8 10 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPEP2 16 67987394 68000586 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPEP2NB 16 68013436 68015911 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPEP3 16 67975663 67980829 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPF1 19 38211006 38229714 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 12 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPF2 11 65333754 65353249 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPF3 14 72619296 72894116 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 13 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPH1 17 2030110 2043430 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPH2 1 43970000 43973369 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPH3 3 16257978 16264972 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPH5 1 100989623 101026088 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPH6 15 35217345 35546193 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPH7 9 137554904 137578935 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPM1 20 50934867 50958555 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPM2 9 127935099 127938484 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPM3 1 155139891 155140595 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPP10 2 114442299 115845752 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 32 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPP3 11 66480013 66509657 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPP4 2 161992241 162074542 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 26 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPP6 7 153887097 154894285 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 31 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPP7 9 137110542 137115177 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPP8 15 65442463 65517704 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPP9 19 4675224 4724673 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 23 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPPA2 3 109293788 109316517 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPPA3 12 7711454 7717559 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPPA4 3 109326141 109337572 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPPA5 6 73353062 73354295 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPRX 19 53632056 53637009 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPT 1 168695459 168729264 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPY19L1 7 34928876 35038271 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 22 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPY19L2 12 63558913 63668939 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPY19L3 19 32405543 32485895 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 18 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPY19L4 8 94719703 94793836 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPY30 2 31867809 32039812 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPYD 1 97077743 97995000 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 33 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPYS 8 104330324 104467053 FALSE 274 -0.276254726456932 51 103435783 105801444 NA 2 NA NA 2 NA 2365661 NA 7 18 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPYSL2 8 26514022 26658178 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPYSL3 5 147390811 147510056 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPYSL4 10 132186900 132205776 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 16 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DPYSL5 2 26847747 26950351 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DQX1 2 74518131 74526336 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DR1 1 93345888 93369498 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRAM1 12 101877351 102012130 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 7 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRAM2 1 111117333 111140216 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRAP1 11 65919257 65921561 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRAXIN 1 11691729 11725857 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 8 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRC1 2 26401916 26456711 FALSE 56 0.00177645496183448 77 25244133 26472685 0.252310779181821 4 NA 0.252310779181821 4 NA 1228552 NA 12 17 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRC3 17 17972813 18016889 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRC7 16 57694793 57731805 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 17 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRD1 5 175440039 175444208 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRD2 11 113409615 113475691 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRD3 3 114128652 114199407 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRD4 11 637293 640706 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 7 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRD5 4 9781680 9784009 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRG1 22 31399523 31530634 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 31 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRG2 17 18087886 18107971 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRGX 10 49364181 49396016 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRICH1 22 23608452 23632321 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DROSHA 5 31400497 31532196 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 36 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DRP2 23 101219769 101264497 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 25 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSC1 18 31129236 31162856 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 19 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSC2 18 31058840 31102522 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSC3 18 30990008 31042815 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 21 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSCAM 21 40010999 40847139 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 44 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSCAML1 11 117427773 117817525 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 45 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSCC1 8 119833976 119856010 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSE 6 116254173 116444860 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 20 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSEL 18 67506582 67516980 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 15 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSG1 18 31318089 31357029 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 21 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSG2 18 31498043 31549008 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 21 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSG3 18 31447795 31478702 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 21 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSG4 18 31376777 31414912 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 22 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSN1 20 36751791 36773818 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSP 6 7541575 7586717 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 44 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSPP 4 87608553 87616910 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 13 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DST 6 56457987 56954628 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 136 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSTN 20 17569863 17609919 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DSTYK 1 205142505 205211566 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTD1 20 18587893 18766644 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTD2 14 31446036 31457510 FALSE 449 -0.090252011740912 67 31387284 34807549 0.31995059840763 3 NA 0.31995059840763 3 NA 3420265 NA 14 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTHD1 4 36281622 36345756 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTL 1 212035553 212107400 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTNA 18 34493290 34891844 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 26 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTNB 2 25377198 25673647 FALSE 56 0.00177645496183448 77 25244133 26472685 0.252310779181821 4 NA 0.252310779181821 4 NA 1228552 NA 12 26 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTNBP1 6 15522801 15663058 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 11 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTWD1 15 49620980 49656232 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTWD2 5 118837322 118988545 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTX1 12 113056709 113098028 TRUE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTX2 7 76461676 76505995 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 14 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTX3 12 57604622 57609804 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTX3L 3 122564238 122575203 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTX4 11 59171430 59208587 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 13 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DTYMK 2 241675742 241686991 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 6 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUOX1 15 45129933 45165576 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 37 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUOX2 15 45092650 45114344 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 35 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUOXA1 15 45117367 45129938 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUOXA2 15 45114321 45118421 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUPD1 10 75037836 75058514 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUS1L 17 82057506 82065887 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUS2 16 67987746 68079320 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 35 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUS3L 19 5784832 5791238 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 15 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUS4L 7 107563484 107578464 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP1 5 172768090 172771195 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP10 1 221701424 221742176 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP11 2 73762184 73780157 FALSE 65 -0.681372041727781 29 73385994 73862307 0.39968910724052 1 0 0.39968910724052 1 0 476313 1 6 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP12 1 161749758 161757238 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP13 10 75094432 75109221 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP14 17 37489831 37513501 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP15 20 31847637 31870747 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 13 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP16 12 12474210 12562383 FALSE 387 -0.113542447011735 67 12079487 12714097 0.31995059840763 3 NA 0.31995059840763 3 NA 634610 NA 7 10 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP18 22 30652051 30667890 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP19 2 183078559 183100005 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP2 2 96143166 96145440 FALSE 72 -0.297431743288301 44 95106429 96195026 0.213873728132233 2 0 0.213873728132233 2 0 1088597 2 15 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP21 23 44844004 44844888 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP22 6 291630 351355 TRUE 184 0.625593972162631 107 292576 486727 0.397448435712946 7 NA 0.397448435712946 7 NA 194151 NA 3 8 2 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP23 1 159780932 159782543 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP26 8 33591332 33600106 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP27 1 167094045 167129165 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP28 2 240560054 240564014 FALSE 109 -0.204551948627658 52 240042747 240874079 0.261858812358373 3 1 0.261858812358373 3 1 831332 2 13 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP3 17 43766121 43778988 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP4 8 29333064 29350668 TRUE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP5 10 110497838 110511544 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP6 12 89347232 89353271 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 6 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP7 3 52048919 52056550 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP8 11 1554044 1571920 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUSP9 23 153642492 153651326 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUT 15 48331011 48343373 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUXA 19 57154021 57167443 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DUXB 16 75693929 75701459 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DVL1 1 1335276 1349350 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 15 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DVL2 17 7225341 7234545 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DVL3 3 184155311 184173614 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DWORF 3 155290229 155293775 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 2 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DXO 6 31969810 31972292 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYDC1 10 80336105 80356755 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYDC2 10 80344745 80368073 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYM 18 49041474 49461347 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYNAP 18 54587757 54599493 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYNC1H1 14 101964510 102056443 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 88 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYNC1I1 7 95772506 96110322 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYNC1I2 2 171687409 171748420 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYNC1LI1 3 32525971 32570874 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYNC1LI2 16 66720893 66751798 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYNC2H1 11 103109410 103479863 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 96 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYNC2LI1 2 43774039 43810010 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 14 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYNLL1 12 120469850 120498493 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYNLL2 17 58083415 58095536 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYNLRB1 20 34516409 34540958 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYNLRB2 16 80540734 80550760 FALSE 530 0.0863261484312413 82 76522085 80684905 0.298111653356898 4 NA 0.298111653356898 4 NA 4162820 NA 12 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYNLT1 6 158636474 158644739 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYNLT3 23 37836757 37847637 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYRK1A 21 37365573 37526358 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYRK1B 19 39825350 39834201 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 13 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYRK2 12 67648338 67665406 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYRK3 1 206635536 206684419 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYRK4 12 4562204 4615302 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYSF 2 71453722 71686768 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 59 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DYTN 2 206651621 206718396 FALSE 99 0.0214721821478593 77 206588151 206755055 0.252310779181821 4 NA 0.252310779181821 4 NA 166904 NA 4 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DZANK1 20 18383367 18467281 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 21 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DZIP1 13 95578202 95644703 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 21 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DZIP1L 3 138061990 138115818 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 17 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 DZIP3 3 108589682 108694846 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 33 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 E2F1 20 33675683 33686404 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 E2F2 1 23506430 23531220 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 E2F3 6 20401906 20493715 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 24 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 E2F4 16 67192169 67198918 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 E2F5 8 85177225 85217158 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 E2F6 2 11444375 11466177 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 E2F7 12 77021247 77065580 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 E2F8 11 19224063 19241620 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 E4F1 16 2223566 2235742 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EAF1 3 15427355 15450635 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EAF2 3 121835183 121886526 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EAPP 14 34515929 34539711 FALSE 449 -0.090252011740912 67 31387284 34807549 0.31995059840763 3 NA 0.31995059840763 3 NA 3420265 NA 14 7 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EARS2 16 23522014 23557731 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 12 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EBAG9 8 109539711 109565996 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EBF1 5 158695916 159099761 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EBF2 8 25841730 26045397 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EBF3 10 129835283 129963841 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 17 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EBF4 20 2692878 2760108 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 16 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EBI3 19 4229498 4237531 FALSE 600 -0.234869927794019 51 4175145 4306008 NA 2 NA NA 2 NA 130863 NA 7 6 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EBLN1 10 22208814 22210021 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EBLN2 3 73061659 73063337 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EBNA1BP2 1 43164175 43270936 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 37 5 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EBP 23 48521158 48528716 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EBPL 13 49660723 49691475 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECD 10 73130155 73169055 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 15 7 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECE1 1 21217247 21345572 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECE2 3 184276011 184293031 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 21 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECEL1 2 232479827 232487828 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECH1 19 38815422 38832005 FALSE 646 -0.00229584309761491 77 38714572 38869416 0.252310779181821 4 NA 0.252310779181821 4 NA 154844 NA 9 10 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECHDC1 6 127288710 127343609 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECHDC2 1 52895910 52927212 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECHDC3 10 11742366 11764070 FALSE 314 0.0797787605968275 82 10796933 12825599 0.298111653356898 4 NA 0.298111653356898 4 NA 2028666 NA 10 6 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECHS1 10 133362480 133373689 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 8 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECI1 16 2239395 2252300 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECI2 6 4115689 4135597 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECM1 1 150508062 150513789 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECM2 9 92493554 92536655 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 15 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECPAS 9 111360692 111484745 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 52 7 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECSCR 5 139448556 139462743 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECSIT 19 11505916 11529174 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECT2 3 172750682 172821474 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 26 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ECT2L 6 138795926 138904070 TRUE 220 0.0543375783167098 82 138298662 142443515 0.298111653356898 4 NA 0.298111653356898 4 NA 4144853 NA 16 21 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDA 23 69616067 70039469 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 11 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDA2R 23 66595637 66639298 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDAR 2 108894471 108989372 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 12 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDARADD 1 236348257 236502915 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDC3 15 74630558 74696292 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDC4 16 67873023 67884503 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 27 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDDM13 19 56272769 56310450 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 15 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDDM3A 14 20745892 20748380 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDDM3B 14 20768427 20770948 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDEM1 3 5187646 5219957 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDEM2 20 35115357 35147364 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDEM3 1 184690231 184754913 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDF1 9 136862119 136866286 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDIL3 5 83940554 84384793 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 11 0 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDN1 6 12290363 12297194 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDN2 1 41478775 41484673 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDN3 20 59300427 59325992 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDNRA 4 147480917 147544954 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDNRB 13 77895481 77975529 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EDRF1 10 125719515 125764143 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 26 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEA1 12 92770637 92929331 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 32 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EED 11 86244544 86278813 TRUE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF1A1 6 73515750 73523797 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF1A2 20 63488012 63499322 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF1AKMT1 13 20728731 20773958 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF1AKMT2 10 124748149 124791870 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF1AKMT3 12 57771492 57782541 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF1AKMT4 3 184249650 184259585 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF1AKMT4-ECE2 3 184249695 184293031 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 30 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF1B2 2 206159585 206162928 FALSE 98 -0.534538327599125 34 206124310 206587285 0.312402751065481 1 0 0.312402751065481 1 0 462975 1 5 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF1D 8 143579697 143599541 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 18 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF1E1 6 8073360 8102578 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF1E1-BLOC1S5 6 8015726 8102530 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF1G 11 62559601 62574086 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF2 19 3976056 3985469 FALSE 599 0.276554850290338 97 3959289 4175087 0.39968910724052 4 NA 0.39968910724052 4 NA 215798 NA 7 20 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF2K 16 22206282 22288732 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEF2KMT 16 5084304 5097808 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEFSEC 3 128153454 128408646 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EEPD1 7 36153149 36301543 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFCAB1 8 48710789 48735311 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFCAB10 7 105565120 105600875 FALSE 247 -0.18197294596649 62 105388711 106112210 0.235629703240478 3 NA 0.235629703240478 3 NA 723499 NA 7 7 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFCAB11 14 89794669 89954777 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFCAB12 3 129401321 129428651 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFCAB13 17 47323290 47441312 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 25 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFCAB14 1 46675159 46719064 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFCAB2 1 244969705 245127164 FALSE 44 0.117466813329847 86 243659450 245702541 0.360033220093454 4 NA 0.360033220093454 4 NA 2043091 NA 11 8 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFCAB3 17 62343941 62416479 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFCAB5 17 29929200 30108452 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFCAB6 22 43528744 43812337 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 34 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFCAB7 1 63523372 63572693 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFCAB8 20 32858923 32961609 FALSE 689 0.316430543791893 99 32330098 32885548 0.361681390833996 5 NA 0.361681390833996 5 NA 555450 NA 9 28 5 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFCAB9 5 172194172 172203452 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 4 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFCC1 3 129001629 129040742 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFEMP1 2 55865967 55924139 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFEMP2 11 65866441 65873592 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFHB 3 19879472 19947025 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 16 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFHC1 6 52362123 52529886 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 28 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFHC2 23 44147882 44343672 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 18 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFHD1 2 232606057 232682781 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 6 3 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFHD2 1 15409895 15430343 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFL1 15 82130230 82262763 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 23 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFNA1 1 155127460 155134857 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFNA2 19 1286154 1300237 FALSE 587 0.217691882461168 93 1042394 1299919 0.39968910724052 4 1 0.39968910724052 4 1 257525 3 12 5 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFNA3 1 155078872 155087538 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFNA4 1 155063731 155069553 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFNA5 5 107376889 107670895 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFNB1 23 68828997 68842147 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 7 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFNB2 13 106489731 106535662 FALSE 441 -0.133025597356164 67 102840913 109206723 0.31995059840763 3 NA 0.31995059840763 3 NA 6365810 NA 12 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFNB3 17 7705202 7711378 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFR3A 8 131904088 132013642 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFR3B 2 25042130 25159137 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 23 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFS 14 23356402 23365752 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 10 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EFTUD2 17 44849943 44899662 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 29 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EGF 4 109912884 110012266 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 26 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EGFL6 23 13569605 13633575 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 13 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EGFL7 9 136658856 136672678 FALSE 309 0.283549133746879 97 136494639 136672669 0.39968910724052 4 NA 0.39968910724052 4 NA 178030 NA 2 18 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EGFL8 6 32164583 32168281 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EGFLAM 5 38258409 38465021 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 25 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EGFR 7 55019021 55211628 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 173 34 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EGLN1 1 231363751 231425044 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EGLN2 19 40798996 40808433 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EGLN3 14 33924231 34462774 FALSE 449 -0.090252011740912 67 31387284 34807549 0.31995059840763 3 NA 0.31995059840763 3 NA 3420265 NA 14 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EGR1 5 138465490 138469315 TRUE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EGR2 10 62811996 62919900 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EGR3 8 22687659 22693302 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EGR4 2 73290929 73293705 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EHBP1 2 62673851 63046487 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 28 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EHBP1L1 11 65576038 65592650 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 28 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EHD1 11 64851642 64888296 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EHD2 19 47713343 47743134 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 9 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EHD3 2 31234337 31269447 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EHD4 15 41895939 41972578 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EHF 11 34621093 34661057 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EHHADH 3 185190624 185281990 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EHMT1 9 137618963 137870016 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 32 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EHMT2 6 31879759 31897687 FALSE 192 0.00493836391948355 77 31761776 31933922 0.252310779181821 4 NA 0.252310779181821 4 NA 172146 NA 16 29 5 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EI24 11 125569216 125584687 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EID1 15 48877886 48880183 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EID2 19 39538705 39540333 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 3 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EID2B 19 39530990 39532854 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EID3 12 104303739 104305205 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF1 17 41688885 41692668 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF1AD 11 65996545 66002176 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF1AX 23 20124518 20141844 FALSE 706 0.169663593513349 90 19670859 20156144 0.275334878251284 2 NA 0.275334878251284 2 NA 485285 NA 5 19 3 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF1B 3 40309684 40312424 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2A 3 150546678 150584242 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 16 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2AK1 7 6022244 6059230 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 24 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2AK2 2 37099210 37157065 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2AK3 2 88556741 88627576 FALSE 71 0.0815929456248537 82 88067910 95104630 0.298111653356898 4 NA 0.298111653356898 4 NA 7036720 NA 11 21 4 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2AK4 15 39934146 40035591 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 43 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2B1 12 123620406 123633766 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2B2 14 75002911 75012366 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 8 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2B3 1 44850522 44986722 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 11 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2B4 2 27364352 27370486 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2B5 3 184135038 184146112 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2D 1 206571292 206612463 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2S1 14 67359997 67386516 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2S2 20 34088298 34112332 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2S3 23 24054716 24077971 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 12 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF2S3B 12 10505602 10523135 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 7 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF3A 10 119033670 119080823 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF3B 7 2354086 2380745 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 19 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF3C 16 28688558 28735730 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF3D 22 36510850 36529436 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 15 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF3E 8 108201216 108435333 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF3F 11 7970251 8001862 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF3G 19 10115017 10119918 FALSE 612 -0.2463765322708 51 9849131 10133617 NA 2 NA NA 2 NA 284486 NA 11 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF3H 8 116642130 116766925 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF3I 1 32221928 32231604 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF3J 15 44537057 44563029 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF3K 19 38619082 38636955 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF3L 22 37848868 37889407 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF3M 11 32583798 32606262 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4A1 17 7572706 7579005 FALSE 540 -0.560247871447121 34 7559238 7654707 0.312402751065481 1 0 0.312402751065481 1 0 95469 1 12 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4A2 3 186783205 186789900 FALSE 136 0.193577617007497 90 186677783 187370824 0.275334878251284 5 NA 0.275334878251284 5 NA 693041 NA 10 15 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4A3 17 80135214 80147183 FALSE 570 -0.251638265228374 50 80089734 80476396 1 2 1 1 2 1 386662 1 9 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4B 12 53006158 53042209 FALSE 408 0.483867645866869 104 52675230 53105164 0.397448435712946 6 NA 0.397448435712946 6 NA 429934 NA 14 15 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4E 4 98871684 98930637 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4E1B 5 176630618 176646641 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4E2 2 232550052 232583644 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4E3 3 71675416 71754773 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4EBP1 8 38030341 38060365 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4EBP2 10 70404379 70428618 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4EBP3 5 140547666 140549578 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4ENIF1 22 31436977 31496108 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4G1 3 184314495 184335358 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 36 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4G2 11 10797050 10809110 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4G3 1 20806292 21176888 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 36 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF4H 7 74174245 74197101 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF5 14 103333544 103345025 FALSE 467 -0.166720648541046 62 102922761 103677490 0.235629703240478 3 NA 0.235629703240478 3 NA 754729 NA 13 10 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF5A 17 7306999 7312463 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF5A2 3 170888415 170908693 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF5AL1 10 79512601 79516440 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF5B 2 99337353 99401326 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 28 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIF6 20 35278911 35284985 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EIPR1 2 3188925 3377882 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELAC1 18 50967991 50988121 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELAC2 17 12992391 13018187 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 26 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELANE 19 851014 856247 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELAVL1 19 7958579 8005659 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELAVL2 9 23690104 23826337 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELAVL3 19 11451326 11481046 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELAVL4 1 50048014 50203786 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELF1 13 40932028 41061440 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELF2 4 139028112 139177218 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELF3 1 202007945 202017188 TRUE 36 -0.0702600326825716 67 201211017 202010242 0.31995059840763 3 NA 0.31995059840763 3 NA 799225 NA 14 28 7 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELF4 23 130064874 130110716 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELF5 11 34478793 34513805 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELFN1 7 1688119 1747954 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELFN2 22 37367960 37427470 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 10 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELK1 23 47635521 47650604 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELK3 12 96194382 96269835 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELK4 1 205597556 205631962 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELL 19 18442663 18522127 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELL2 5 95885098 95962071 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELL3 15 43772600 43777543 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 11 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELMO1 7 36854361 37449249 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELMO2 20 46366049 46432985 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELMO3 16 67199111 67204029 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 18 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELMOD1 11 107591091 107666779 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELMOD2 4 140524158 140553770 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELMOD3 2 85354394 85391752 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 14 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELMSAN1 14 73715122 73790285 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 18 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELN 7 74027789 74069907 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 34 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELOA 1 23743155 23762059 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELOA2 18 47032572 47035621 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELOA3C 18 46968695 46969912 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 1 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELOA3D 18 46962768 46964408 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELOB 16 2771414 2777297 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELOC 8 73939169 73972287 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELOF1 19 11551147 11559236 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELOVL1 1 43363397 43368074 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELOVL2 6 10980759 11044314 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELOVL3 10 102226328 102229589 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELOVL4 6 79914812 79947580 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELOVL5 6 53267398 53349179 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELOVL6 4 110045846 110199199 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELOVL7 5 60751791 60844389 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELP1 9 108867517 108934116 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 36 8 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELP2 18 36129444 36180556 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 23 5 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELP3 8 28089673 28191156 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 15 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELP4 11 31509700 31790328 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELP5 17 7251416 7259940 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELP6 3 47495640 47513761 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ELSPBP1 19 47994651 48025153 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 5 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMB 5 50396192 50443248 FALSE 166 0.271579430422026 97 44304029 50797082 0.39968910724052 4 NA 0.39968910724052 4 NA 6493053 NA 5 10 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMC1 1 19215664 19251552 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 24 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMC10 19 50476400 50490870 FALSE 670 -0.191579946531989 57 50417807 50629807 0.158317833115363 3 NA 0.158317833115363 3 NA 212000 NA 10 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMC2 8 108443601 108486918 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMC3 3 9962537 10011116 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMC4 15 34224999 34230156 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMC6 17 3668815 3669668 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMC7 15 34084017 34101948 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMC8 16 85771758 85799608 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMC9 14 24138959 24141588 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMCN 4 100395341 100880126 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMD 23 154379197 154381523 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EME1 17 50373220 50381483 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EME2 16 1773207 1781708 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMG1 12 6970893 6997428 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 17 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMID1 22 29205851 29259597 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMILIN1 2 27078567 27086408 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMILIN2 18 2847030 2915993 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMILIN3 20 41359966 41366827 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EML1 14 99737693 99942060 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EML2 19 45606994 45645629 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 24 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EML3 11 62602218 62612765 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EML4 2 42169350 42332548 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 34 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EML5 14 88612431 88792752 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 46 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EML6 2 54723499 54972025 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 43 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMP1 12 13196716 13219939 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMP2 16 10528422 10580698 FALSE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMP3 19 48321509 48330553 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMSY 11 76444923 76553025 FALSE 358 1.0596527480993 116 76445049 76552519 0.397448435712946 10 NA 0.397448435712946 10 NA 107470 NA 1 40 5 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMX1 2 72916260 72936071 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EMX2 10 117542444 117549546 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EN1 2 118842171 118847678 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EN2 7 155458129 155464831 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENAH 1 225486835 225653142 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENAM 4 70628744 70686816 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENC1 5 74627406 74641424 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENDOD1 11 95089810 95132645 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENDOG 9 128818474 128822677 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENDOU 12 47709734 47725567 FALSE 400 0.134361824814035 86 46793047 47718156 0.360033220093454 4 NA 0.360033220093454 4 NA 925109 NA 5 11 1 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENDOV 17 80415165 80438086 FALSE 570 -0.251638265228374 50 80089734 80476396 1 2 1 1 2 1 386662 1 9 12 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENG 9 127815012 127854756 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 18 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENGASE 17 79074939 79088599 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENHO 9 34521040 34523041 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENKD1 16 67662945 67667265 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENKUR 10 24981979 25062279 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENO1 1 8861000 8879250 FALSE 7 0.18541391362799 90 8324498 9691530 0.275334878251284 5 NA 0.275334878251284 5 NA 1367032 NA 12 13 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENO2 12 6913745 6923698 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 12 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENO3 17 4948092 4957131 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENO4 10 116849512 116911788 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENOPH1 4 82430562 82461091 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENOSF1 18 670324 712676 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENOX1 13 43213518 43786908 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENOX2 23 130623369 130903317 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENPEP 4 110365733 110565285 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 22 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENPP1 6 131808016 131895155 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENPP2 8 119557086 119673453 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 28 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENPP3 6 131628442 131747418 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 38 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENPP4 6 46129993 46146699 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENPP5 6 46159187 46170971 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENPP6 4 184088706 184221230 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 8 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENPP7 17 79730919 79742222 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENSA 1 150600851 150629612 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENTHD1 22 39743044 39893864 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENTPD1 10 95711779 95869695 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 14 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENTPD2 9 137048098 137054045 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENTPD3 3 40387156 40428744 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENTPD4 8 23385783 23457695 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENTPD5 14 73958010 74019399 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 21 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENTPD6 20 25195693 25226729 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 17 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENTPD7 10 99659506 99706240 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENTPD8 9 137434364 137441816 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENTR1 9 136401922 136410609 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 11 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ENY2 8 109334324 109345953 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EOGT 3 68975214 69013961 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EOMES 3 27715949 27722711 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EP300 22 41091786 41180079 TRUE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 56 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EP400 12 131949920 132081102 TRUE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 62 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPAS1 2 46293667 46386703 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 33 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPB41 1 28887091 29120046 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPB41L1 20 36091504 36232799 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPB41L2 6 130839347 131063322 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPB41L3 18 5392381 5630700 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 27 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPB41L4A 5 112142441 112419316 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 25 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPB41L4B 9 109171975 109320964 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 29 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPB41L5 2 120013005 120179119 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 25 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPB42 15 43197227 43221125 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 16 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPC1 10 32267751 32378798 FALSE 319 0.658937471729808 108 32009218 32269099 0.397448435712946 7 NA 0.397448435712946 7 NA 259881 NA 2 18 2 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPC2 2 148644440 148787568 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPCAM 2 47345158 47387601 TRUE 60 0.225756499120382 94 47172414 47375225 0.39968910724052 4 NA 0.39968910724052 4 NA 202811 NA 3 18 2 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPDR1 7 37683843 37951941 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 31 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPG5 18 45847609 45967339 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 49 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPGN 4 74308473 74315307 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHA1 7 143390289 143408892 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 23 0 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHA10 1 37713880 37765133 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 23 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHA2 1 16124337 16156087 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 24 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHA3 3 89107524 89482134 TRUE 121 -0.0206780540273211 77 75738958 89482041 0.252310779181821 4 NA 0.252310779181821 4 NA 13743083 NA 14 33 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHA4 2 221418027 221574202 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 20 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHA5 4 65319563 65670495 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 47 7 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHA6 3 96814581 97752460 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 27 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHA7 6 93240020 93419547 TRUE 204 0.670526654369472 108 93240185 93419565 0.397448435712946 7 NA 0.397448435712946 7 NA 179380 NA 1 42 6 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHA8 1 22563564 22603594 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 19 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHB1 3 134597801 135260467 TRUE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 51 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHB2 1 22710839 22921500 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 21 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHB3 3 184561784 184582409 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 20 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHB4 7 100802565 100827521 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 21 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHB6 7 142855061 142871094 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 21 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHX1 1 225810092 225845563 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHX2 8 27490779 27545564 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 19 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHX3 19 15226919 15233435 FALSE 625 0.847979048109342 113 15160025 15332467 0.397448435712946 8 NA 0.397448435712946 8 NA 172442 NA 3 8 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPHX4 1 92029982 92063536 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPM2A 6 145382535 145736023 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPM2AIP1 3 36985043 36993168 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPN1 19 55675226 55709858 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 16 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPN2 17 19215615 19336715 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPN3 17 50532543 50543750 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPO 7 100720800 100723700 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPOP 17 38671703 38675421 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPOR 19 11377205 11384342 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPPIN 20 45540626 45547752 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPPIN-WFDC6 20 45536986 45547426 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPPK1 8 143857324 143878464 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 28 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPRS 1 219968601 220046658 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 35 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPS15 1 51354263 51519328 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 26 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPS15L1 19 16355239 16472085 FALSE 628 1.43190951484671 122 16234465 16361891 0.397448435712946 14 NA 0.397448435712946 14 NA 127426 NA 3 24 0 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPS8 12 15620158 15882329 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPS8L1 19 55072020 55087923 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 21 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPS8L2 11 694438 727727 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 29 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPS8L3 1 109750080 109764027 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPSTI1 13 42886388 42992271 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPX 17 58192737 58205174 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 16 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EPYC 12 90963679 91005026 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EQTN 9 27284659 27297139 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERAL1 17 28854938 28861067 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERAP1 5 96760810 96808100 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 28 11 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERAP2 5 96875939 96919716 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 20 7 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERAS 23 48826513 48830138 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERBB2 17 39687914 39730426 FALSE 550 0.588438690170753 105 39461721 39864123 0.397448435712946 6 NA 0.397448435712946 6 NA 402402 NA 11 49 5 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERBB3 12 56076799 56103505 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 46 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERBB4 2 211375717 212538841 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 59 11 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERBIN 5 65926475 66082549 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 31 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERC1 12 990509 1495933 FALSE 376 0.607695826332189 107 896308 1028045 0.397448435712946 6 NA 0.397448435712946 6 NA 131737 NA 3 22 1 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERC2 3 55508308 56468363 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERCC1 19 45407333 45478828 FALSE 661 0.715350247494231 111 45349921 45423906 0.397448435712946 7 NA 0.397448435712946 7 NA 73985 NA 5 28 3 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERCC2 19 45349837 45370918 TRUE 661 0.715350247494231 111 45349921 45423906 0.397448435712946 7 NA 0.397448435712946 7 NA 73985 NA 5 34 7 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERCC3 2 127257290 127294176 TRUE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 25 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERCC4 16 13920157 13952345 TRUE 518 0.520580734359524 105 11965400 14446991 0.397448435712946 6 NA 0.397448435712946 6 NA 2481591 NA 8 47 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERCC5 13 102807146 102876001 TRUE 440 -0.576133065842435 32 102637150 102839818 0.364170154096734 1 0 0.364170154096734 1 0 202668 1 8 45 2 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERCC6 10 49455368 49539538 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 36 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERCC6L 23 72204657 72239047 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 15 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERCC6L2 9 95875701 96014571 FALSE 298 0.609408307265446 107 95443161 95876006 0.397448435712946 7 NA 0.397448435712946 7 NA 432845 NA 2 27 1 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERCC8 5 60873831 60945073 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EREG 4 74365143 74388751 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERF 19 42247572 42255157 TRUE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERFE 2 238158982 238168900 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 8 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERG 21 38380027 38661780 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 30 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERG28 14 75649791 75661189 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 4 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERGIC1 5 172834275 172952685 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERGIC2 12 29337352 29381189 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 13 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERGIC3 20 35542021 35557634 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERH 14 69380123 69398627 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 4 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERI1 8 9002147 9116746 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERI2 16 20780193 20900349 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 50 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERI3 1 44221070 44355260 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERICH1 8 614746 738106 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERICH2 2 170783786 170798971 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERICH3 1 74568111 74673738 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 25 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERICH4 19 41443158 41444765 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 2 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERICH5 8 98064311 98093610 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERICH6 3 150659885 150703971 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 16 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERICH6B 13 45534522 45615739 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERLEC1 2 53787044 53818819 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 14 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERLIN1 10 100150094 100188334 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERLIN2 8 37736601 37759101 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERMAP 1 42817088 42844993 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERMARD 6 169751622 169781584 FALSE 230 -0.0331467567986683 71 168062029 170285618 0.212208033369562 4 0 0.212208033369562 4 0 2223589 4 11 19 5 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERMN 2 157318625 157327713 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERMP1 9 5765076 5833117 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 27 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERN1 17 64039142 64130819 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 25 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERN2 16 23690326 23713500 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERO1A 14 52639916 52695900 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 17 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERO1B 1 236215555 236281985 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERP27 12 14914035 14939082 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERP29 12 112013316 112023451 FALSE 421 -0.0176554379426518 77 111455010 112163629 0.252310779181821 4 NA 0.252310779181821 4 NA 708619 NA 11 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERP44 9 99979179 100099040 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERRFI1 1 8004404 8026308 TRUE 6 -1.618022087249 11 8011953 8318135 0.397448435712946 0 0 0.397448435712946 0 0 306182 0 2 16 1 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERV3-1 7 64990809 65006743 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 8 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERVFRD-1 6 11102489 11111732 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERVMER34-1 4 52722618 52751640 FALSE 145 -0.255465332866297 51 48565705 52745352 NA 2 NA NA 2 NA 4179647 NA 10 7 2 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERVV-1 19 53013921 53016122 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERVV-2 19 53044738 53051076 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 7 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ERVW-1 7 92468380 92477986 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESAM 11 124752583 124762290 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESCO1 18 21529281 21600884 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESCO2 8 27771949 27812640 TRUE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESD 13 46771256 46797232 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESF1 20 13714322 13784886 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESM1 5 54977864 55022671 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESPL1 12 53268299 53293643 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 40 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESPN 1 6424776 6461367 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 18 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESPNL 2 238100157 238133287 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 17 6 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESR1 6 151656691 152129619 FALSE 223 0.236892508535766 96 150395481 152208217 0.39968910724052 4 1 0.39968910724052 4 1 1812736 3 10 61 5 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESR2 14 64084232 64338112 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 74 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESRP1 8 94641074 94707466 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESRP2 16 68229111 68238102 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 16 0 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESRRA 11 64305572 64316743 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESRRB 14 76310712 76501837 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 11 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESRRG 1 216503246 217137755 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESS2 22 19130279 19144684 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 16 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESX1 23 104250038 104254933 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESYT1 12 56118250 56144671 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 35 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESYT2 7 158730995 158830253 FALSE 257 0.0628459934565962 82 157576685 159144789 0.298111653356898 4 NA 0.298111653356898 4 NA 1568104 NA 5 25 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ESYT3 3 138434586 138481686 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 26 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETAA1 2 67397319 67412089 TRUE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 14 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETDA 23 135252061 135253583 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETDB 23 135118955 135120526 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETDC 23 135309480 135309659 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETF1 5 138506095 138543300 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETFA 15 76215355 76311472 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETFB 19 51345169 51366418 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETFBKMT 12 31647160 31673114 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETFDH 4 158672125 158709623 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETFRF1 12 25195216 25209645 FALSE 394 3.13953565208866 127 25200305 25648555 0.397448435712946 52 NA 0.397448435712946 52 NA 448250 NA 3 19 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETHE1 19 43506719 43527244 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETNK1 12 22625075 22690665 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETNK2 1 204131062 204152003 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETNPPL 4 108742040 108763054 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETS1 11 128458761 128587558 FALSE 373 0.704775300636153 111 126449052 128812881 0.397448435712946 7 NA 0.397448435712946 7 NA 2363829 NA 3 29 3 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETS2 21 38805307 38824955 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETV1 7 13891228 13991425 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 319 24 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETV2 19 35641745 35644871 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETV3 1 157121191 157138474 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETV3L 1 157092044 157099808 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETV4 17 43527844 43579620 FALSE 559 0.560981773916833 105 43528178 43546340 0.397448435712946 6 NA 0.397448435712946 6 NA 18162 NA 2 54 5 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETV5 3 186046308 186110318 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 71 1 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETV6 12 11649854 11895402 TRUE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 441 82 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ETV7 6 36354091 36387800 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 10 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EVA1A 2 75469302 75569722 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EVA1B 1 36322031 36324154 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EVA1C 21 32412006 32515397 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EVC 4 5711197 5814305 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 24 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EVC2 4 5542772 5709548 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 27 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EVI2A 17 31317560 31321884 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EVI2B 17 31303766 31314112 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EVI5 1 92508696 92792404 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EVI5L 19 7830233 7864976 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 20 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EVL 14 99971449 100144236 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EVPL 17 76004502 76027452 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 37 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EVPLL 17 18377662 18389647 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 9 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EVX1 7 27242700 27250493 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 7 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EVX2 2 176077472 176083913 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EWSR1 22 29268009 29300525 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 58 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXD1 15 41182725 41230743 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXD2 14 69191511 69244020 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 11 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXD3 9 137306896 137423262 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 26 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXO1 1 241847967 241895148 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXO5 1 40508741 40516556 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOC1 4 55853616 55905034 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOC1L 4 55819819 55837487 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOC2 6 485133 693111 FALSE 184 0.625593972162631 107 292576 486727 0.397448435712946 7 NA 0.397448435712946 7 NA 194151 NA 3 31 1 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOC3 5 443158 471937 FALSE 160 0.207920496709617 94 224566 833800 0.39968910724052 4 NA 0.39968910724052 4 NA 609234 NA 9 14 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOC3L1 16 67184366 67190204 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOC3L2 19 45212621 45245431 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOC3L4 14 103100144 103110559 FALSE 467 -0.166720648541046 62 102922761 103677490 0.235629703240478 3 NA 0.235629703240478 3 NA 754729 NA 13 15 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOC4 7 133253073 134066589 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 21 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOC5 14 57200507 57269008 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 20 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOC6 10 92834713 93059493 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 24 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOC6B 2 72175984 72826041 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOC7 17 76081017 76121576 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 26 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOC8 1 231332753 231337852 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOG 3 38496127 38542161 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOSC1 10 97436142 97446017 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOSC10 1 11066618 11099881 FALSE 10 -0.472587818930969 39 11046896 11690703 NA 2 NA NA 2 NA 643807 NA 11 25 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOSC2 9 130693721 130704894 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 9 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOSC3 9 37766978 37801437 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 14 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOSC4 8 144078626 144080647 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOSC5 19 41386374 41397479 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOSC6 16 70246778 70251930 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOSC7 3 44975241 45036066 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOSC8 13 36998816 37009613 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXOSC9 4 121801317 121817021 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXPH5 11 108505431 108593738 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 26 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXT1 8 117794490 118111853 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 15 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXT2 11 44095549 44245429 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 17 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXTL1 1 26019884 26036464 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXTL2 1 100872372 100895998 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EXTL3 8 28600469 28755599 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EYA1 8 71197433 71592025 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EYA2 20 46894624 47188844 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EYA3 1 27970344 28088696 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EYA4 6 133240598 133532120 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EYS 6 63719980 65707225 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 69 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EZH1 17 42700275 42745049 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 29 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EZH2 7 148807383 148884321 TRUE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 29 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 EZR 6 158765741 158819412 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 19 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F10 13 113122814 113149529 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F11 4 186265945 186288806 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F11R 1 160995211 161021348 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F12 5 177402140 177409576 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 15 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F13A1 6 6144085 6321013 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 16 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F13B 1 197038741 197067267 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F2 11 46719180 46739506 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F2R 5 76716043 76735781 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F2RL1 5 76818933 76835315 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F2RL2 5 76615482 76623434 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F2RL3 19 16888860 16892606 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 6 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F3 1 94529225 94541800 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F5 1 169514166 169586588 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 39 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F7 13 113105788 113120681 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F8 23 154835788 155026940 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 42 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F8A1 23 154886349 154888061 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 F9 23 139530758 139563458 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FA2H 16 74712955 74774831 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAAH 1 46394265 46413848 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 17 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAAH2 23 57286706 57489196 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 12 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAAP100 17 81539885 81553961 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 14 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAAP20 1 2184461 2212720 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAAP24 19 32972209 32978222 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FABP1 2 88122982 88128116 FALSE 71 0.0815929456248537 82 88067910 95104630 0.298111653356898 4 NA 0.298111653356898 4 NA 7036720 NA 11 4 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FABP12 8 81524981 81531378 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FABP2 4 119317250 119322390 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FABP3 1 31365625 31376850 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FABP4 8 81478419 81483263 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FABP5 8 81280363 81284777 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FABP6 5 160187367 160238735 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FABP7 6 122779475 122784074 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FABP9 8 81458341 81461579 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FADD 11 70203163 70207390 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FADS1 11 61799625 61829318 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FADS2 11 61792980 61867354 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 32 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FADS3 11 61873519 61892051 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FADS6 17 74877299 74893781 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAF1 1 50437028 50960263 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAF2 5 176447628 176510074 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAH 15 80152490 80186946 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAHD1 16 1826941 1840207 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAHD2A 2 95402721 95416616 FALSE 72 -0.297431743288301 44 95106429 96195026 0.213873728132233 2 0 0.213873728132233 2 0 1088597 2 15 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAHD2B 2 97083583 97094882 FALSE 74 -0.129279957310398 64 96646499 97245420 0.313405470508204 3 1 0.313405470508204 3 1 598921 2 10 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAIM 3 138608606 138633376 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 7 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAIM2 12 49866896 49904217 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM102A 9 127940579 127980513 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM102B 1 108560089 108644900 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM104A 17 73207353 73236753 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM104B 23 55143102 55161310 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM107A 3 58564117 58627610 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM107B 10 14518557 14774897 FALSE 315 0.228244116357697 94 12828838 14820149 0.39968910724052 4 NA 0.39968910724052 4 NA 1991311 NA 13 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM110A 20 833715 857463 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM110B 8 57994509 58204279 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM110C 2 38814 46870 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 5 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM110D 1 26159020 26163962 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM111A 11 59142748 59155039 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM111B 11 59107185 59127410 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM114A1 4 38867677 38945739 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 17 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM114A2 5 153990128 154038936 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM117A 17 49710332 49789180 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM117B 2 202635188 202769757 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM118A 22 45308968 45341955 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM118B 11 126211414 126262986 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM120A 9 93451722 93566107 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 26 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM120AOS 9 93431441 93453592 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM120B 6 170290703 170407065 FALSE 231 -0.348813635967544 46 170286311 170584601 NA 2 NA NA 2 NA 298290 NA 5 18 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM120C 23 54068324 54183281 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 23 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM122A 9 68780034 68784608 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM122B 23 134769566 134797232 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM122C 23 134796395 134854835 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM124A 13 51222334 51284241 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM124B 2 224378698 224402085 FALSE 103 0.153439494900873 86 223878656 225408986 0.360033220093454 4 NA 0.360033220093454 4 NA 1530330 NA 8 6 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM126A 7 22889371 23014130 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 12 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM126B 2 200973718 201071671 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM129A 1 184790724 184974550 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM129B 9 127505339 127578989 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 17 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM129C 19 17523301 17553839 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 18 2 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM131A 3 184335926 184348421 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM131B 7 143353400 143362770 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM131C 1 16057769 16073632 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 7 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM133A 23 93674013 93712274 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM133B 7 92560793 92590394 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM135A 6 70412941 70561174 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM135B 8 138130023 138496822 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 28 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM136A 2 70295975 70302090 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 4 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM13A 4 88725955 89111398 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 26 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM13B 5 137937960 138051961 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM13C 10 59246129 59363181 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM149A 4 186104419 186172667 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM149B1 10 73168166 73244504 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 16 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM151A 1 54609182 54623556 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM151B 5 80487969 80542563 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM153A 5 177707981 177783398 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM153B 5 176060689 176116015 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 16 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM153C 5 178006405 178055559 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM155A 13 107163510 107866735 FALSE 441 -0.133025597356164 67 102840913 109206723 0.31995059840763 3 NA 0.31995059840763 3 NA 6365810 NA 12 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM155B 23 69505241 69532508 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 7 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM160A1 4 151409216 151663632 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM160A2 11 6211335 6234711 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 18 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM160B1 10 114821744 114899832 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM160B2 8 22089159 22104898 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 18 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM161A 2 61824854 61854143 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 11 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM161B 14 73931501 73950414 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 14 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM162A 3 122384176 122412334 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM162B 6 116752197 116765723 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 4 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM163A 1 179743163 179816198 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM163B 9 133578415 133586197 FALSE 305 0.210954204844519 94 133475068 133579261 0.39968910724052 4 NA 0.39968910724052 4 NA 104193 NA 4 2 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM166A 9 137243584 137247770 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM166B 9 35561831 35563899 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM167A 8 11421463 11475908 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM167B 1 32247233 32248856 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM168A 11 73400487 73598189 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM168B 2 131047876 131093460 FALSE 84 -0.292186070013859 45 130656603 132790182 1 2 1 1 2 1 2133579 1 16 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM169A 5 74777574 74866951 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM169B 15 98437162 98547728 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM170A 5 119629559 119635822 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM170B 10 49131154 49134008 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM171A1 10 15211643 15371062 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM171A2 17 44353215 44363875 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM171B 2 186693971 186765965 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM172A 5 93618069 94111699 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM173A 16 720581 722601 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 5 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM173B 5 10226330 10249897 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM174A 5 100535305 100586741 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM174B 15 92617443 92809884 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM177A1 14 35044907 35113130 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 16 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM177B 1 222737207 222750805 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM178B 2 96875882 96986592 FALSE 74 -0.129279957310398 64 96646499 97245420 0.313405470508204 3 1 0.313405470508204 3 1 598921 2 10 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM180A 7 135728348 135748846 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM180B 11 47586693 47589194 FALSE 346 -0.207050878279221 57 47484529 47631121 0.158317833115363 3 NA 0.158317833115363 3 NA 146592 NA 7 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM181A 14 93918894 93929608 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM181B 11 82729941 82733864 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM183A 1 43145153 43156396 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM184A 6 118959763 119149387 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 22 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM184B 4 17629306 17781512 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM185A 7 102748971 102809225 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 9 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM186A 12 50326230 50396622 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 30 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM186B 12 49582885 49605639 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM187A 17 44899712 44905390 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM187B 19 35224800 35228729 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM189A1 15 29120254 29570723 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM189A2 9 69324567 69392558 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM189B 1 155247205 155255483 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM192A 16 57152466 57186116 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM193A 4 2536631 2732565 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 23 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM193B 5 177519788 177554541 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM198A 3 42979267 43060211 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 10 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM198B 4 158124474 158173318 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM199X 23 104166620 104195902 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM19A1 3 68004216 68545625 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM19A2 12 61708259 62279150 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM19A3 1 112720419 112727235 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM19A4 3 68731766 68953297 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM19A5 22 48489460 48850912 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM200A 7 99546308 99558536 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM200B 4 15681662 15705565 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 10 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM204A 10 118297930 118342328 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM205A 9 34723055 34729467 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 18 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM205C 9 34889064 34895778 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM206A 9 108934181 108950744 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM207A 21 44940010 44976989 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM208A 3 56620133 56683237 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 35 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM208B 10 5684838 5763740 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 38 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM209A 20 56517187 56526142 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM209B 20 56533246 56536520 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM20A 17 68535113 68601389 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM20B 1 179025804 179076562 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM20C 7 192969 260745 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM210A 18 13663347 13726663 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM210B 20 56358915 56368663 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM214A 15 52581317 52709817 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 20 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM214B 9 35104112 35116341 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM216A 12 110468364 110490385 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM216B 13 42781550 42791549 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM217A 6 4049434 4087344 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 18 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM217B 20 59933764 59948680 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM218A 4 164956948 164959122 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM219A 9 34398184 34458570 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM219B 15 74899987 74907121 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM220A 7 6329409 6348981 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM221A 7 23680130 23703249 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 7 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM221B 9 35816391 35828747 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM222A 12 109714228 109770507 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM222B 17 28755978 28855232 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM227A 22 38578120 38656629 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM227B 15 49326962 49620931 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 42 4 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM228A 2 24175069 24200849 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM228B 2 24076526 24169640 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 19 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM229A 1 32361270 32364278 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM229B 6 112087599 112102790 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 2 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM234A 16 234546 268971 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 14 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM234B 12 13044284 13142521 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 24 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM236C 23 72912615 72913401 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 1 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM236D 23 72807425 72808210 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 1 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM237A 2 206642412 206649011 FALSE 99 0.0214721821478593 77 206588151 206755055 0.252310779181821 4 NA 0.252310779181821 4 NA 166904 NA 4 3 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM240A 3 46612435 46626543 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM241A 4 112145397 112195256 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM241B 10 69630251 69633599 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM24A 10 122910701 122913111 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM24B 10 122849078 122879641 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 2 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM25A 10 87020306 87024730 FALSE 329 -0.116680330790243 67 86927969 87862413 0.31995059840763 3 NA 0.31995059840763 3 NA 934444 NA 13 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM25C 10 47995355 47999791 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM25G 10 47487219 47491693 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 1 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM32A 19 16185380 16192046 FALSE 627 -0.490607499224798 35 15728649 16234395 0.252021069663427 1 0 0.252021069663427 1 0 505746 1 13 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM3A 23 154506159 154516242 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM3B 21 41304212 41357431 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM3C 7 121348851 121396364 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM3D 3 58633946 58666848 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM43A 3 194686544 194689037 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM43B 1 20552439 20555010 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM45A 10 119104086 119137984 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM47A 23 34129756 34132314 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 9 1 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM47B 23 34942796 34944915 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM47C 23 37008397 37011666 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 12 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM47E 4 76214040 76283780 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 9 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM47E-STBD1 4 76251721 76311129 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 15 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM49A 2 16549459 16666331 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 10 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM49B 8 129839593 130017129 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM50A 23 154444126 154450654 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM50B 6 3849373 3851320 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM53A 4 1617915 1684302 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM53B 10 124619292 124744269 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM53C 5 138331935 138349729 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM57A 17 732412 742972 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM57B 16 30024427 30052978 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM69A 1 92832737 92961522 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM69B 9 136712570 136724050 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 8 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM69C 18 74434099 74457944 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 7 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM71A 1 212624474 212626778 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM71B 5 157161846 157166264 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM71C 12 99647753 99650046 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM71D 14 67189393 67228550 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 9 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM71E1 19 50466785 50476753 FALSE 670 -0.191579946531989 57 50417807 50629807 0.158317833115363 3 NA 0.158317833115363 3 NA 212000 NA 10 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM71E2 19 55354908 55363260 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM71F1 7 128709061 128731743 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM71F2 7 128672288 128687872 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM72A 1 206186179 206204414 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM72B 1 121167646 121185539 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM72C 1 143955364 143971965 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM72D 1 145096000 145112696 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM76A 1 27725979 27763122 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM76B 11 95768942 95790409 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM78A 9 131258076 131276547 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM78B 1 166057426 166166969 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM81A 15 59372693 59523549 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM81B 5 95391344 95450454 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM83A 8 123178960 123210079 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM83B 6 54846771 54942022 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM83C 20 35285731 35292401 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM83D 20 38926312 38953106 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM83E 19 48600810 48614854 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM83F 22 39994949 40043529 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM83G 17 18968789 19004804 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM83H 8 143723933 143733801 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 15 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM84A 2 14632686 14650814 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM84B 8 126552442 126558393 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM86B1 8 12182096 12194133 FALSE 259 -1.47337286372647 13 11974570 12191811 0.39968910724052 0 0 0.39968910724052 0 0 217241 0 8 6 4 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM86B2 8 12425614 12436343 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 6 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM86C1 11 71787510 71801236 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM89A 1 231018958 231040246 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM89B 11 65572349 65574198 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM8A1 6 17600355 17611719 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 7 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM90A1 12 8221260 8227618 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 7 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM90A26 4 9170409 9176730 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM91A1 8 123768456 123815452 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 24 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM92A 8 93698561 93731527 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM92B 16 85098358 85112508 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM95C 9 38540569 38577207 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 2 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM98A 2 33583658 33599382 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM98B 15 38454127 38487710 FALSE 478 0.784528466776882 112 38247915 38454136 0.397448435712946 8 NA 0.397448435712946 8 NA 206221 NA 2 9 0 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM98C 19 38403135 38409088 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM9A 23 8790795 8801383 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 9 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM9B 23 9024232 9164639 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAM9C 23 13035618 13044682 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAN1 15 30903852 30943108 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 21 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FANCA 16 89737549 89816657 TRUE 535 0.126990432456591 86 89733549 90075852 0.360033220093454 4 NA 0.360033220093454 4 NA 342303 NA 12 56 7 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FANCB 23 14835961 14873069 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 15 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FANCC 9 95099054 95426796 TRUE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 49 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FANCD2 3 10026414 10101930 TRUE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 60 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FANCD2OS 3 10081317 10108231 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 23 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FANCE 6 35452356 35467103 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FANCF 11 22622890 22625841 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FANCG 9 35073835 35080016 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 19 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FANCI 15 89243949 89317261 FALSE 499 -0.326925020976481 44 88857449 89702022 0.213873728132233 2 0 0.213873728132233 2 0 844573 2 13 45 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FANCL 2 58159243 58241372 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 53 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FANCM 14 45135940 45200890 FALSE 452 1.01465795566941 115 45134431 45200556 0.397448435712946 10 NA 0.397448435712946 10 NA 66125 NA 2 57 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FANK1 10 125896539 126009592 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAP 2 162170684 162245151 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 26 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAR1 11 13668670 13732346 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAR2 12 29149103 29340980 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FARP1 13 98142562 98455176 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 35 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FARP2 2 241356243 241494841 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 30 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FARS2 6 5261044 5829192 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FARSA 19 12922479 12934037 FALSE 620 0.246971120530574 97 12876151 13116391 0.39968910724052 4 NA 0.39968910724052 4 NA 240240 NA 12 12 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FARSB 2 222570536 222656337 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 17 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAS 10 88990582 89015785 TRUE 331 0.160746647112512 87 88274961 89024998 0.206344716318008 6 3 0.206344716318008 6 3 750037 3 10 23 4 FALSE AMP (BALANCED) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FASLG 1 172659018 172666874 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FASN 17 82078333 82098332 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 49 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FASTK 7 151076593 151080866 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FASTKD1 2 169529749 169573875 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FASTKD2 2 206765357 206792509 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 14 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FASTKD3 5 7859159 7869037 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 11 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FASTKD5 20 3146519 3159897 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAT1 4 186587783 186726722 TRUE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 83 22 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAT2 5 151504093 151568944 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 63 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAT3 11 92352096 92896470 FALSE 360 -0.742358942647957 27 90203459 92801489 0.255173832388045 0 0 0.255173832388045 0 0 2598030 0 2 66 3 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAT4 4 125316399 125492932 FALSE 155 -0.704237669359932 29 122979275 125487575 0.39968910724052 1 0 0.39968910724052 1 0 2508300 1 4 66 3 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FATE1 23 151716035 151723194 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAU 11 65120628 65122473 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAXC 6 99271169 99350062 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FAXDC2 5 154818491 154859252 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBF1 17 75909574 75941140 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 30 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBH1 10 5890203 5937594 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 26 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBL 19 39834458 39846414 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBLIM1 1 15756607 15786594 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBLL1 5 168529116 168530634 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 4 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBLN1 22 45502238 45601135 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBLN2 3 13549131 13638422 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 23 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBLN5 14 91869412 91947987 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBLN7 2 112138385 112188216 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBN1 15 48408306 48645849 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 67 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBN2 5 128257909 128659185 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 69 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBN3 19 8065402 8149846 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 68 9 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBP1 9 94603133 94640249 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 8 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBP2 9 94558720 94593793 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 8 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBRS 16 30658431 30670814 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBRSL1 12 132489551 132585188 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 24 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL12 19 9810267 9827816 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 6 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL13 7 102813230 103074843 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 28 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL14 12 1565993 1594165 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL15 10 102419189 102423136 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL16 16 692498 705829 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL17 5 107859035 108382098 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL18 7 5431335 5513798 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL19 16 30923055 30948783 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL2 3 33277025 33403662 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 24 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL20 17 39252644 39402523 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL22 15 63597353 63602428 FALSE 487 0.296385928010631 99 61991730 63677860 0.361681390833996 5 NA 0.361681390833996 5 NA 1686130 NA 13 4 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL3 13 76992598 77027195 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL4 6 98868538 98948006 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL5 4 15604539 15681679 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL6 8 144355431 144359376 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL7 5 15500196 15939795 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXL8 16 67159931 67164570 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO10 9 37510892 37576349 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO11 2 47789316 47905793 TRUE 61 -0.812791414070772 25 47376988 47829819 0.39968910724052 1 0 0.39968910724052 1 0 452831 1 5 66 3 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO15 18 74073353 74147865 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 13 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO16 8 28348287 28490318 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 20 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO17 19 38941401 38975910 FALSE 647 -0.439700824472697 39 38869641 39110047 NA 2 NA NA 2 NA 240406 NA 10 7 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO2 1 11637018 11655785 FALSE 10 -0.472587818930969 39 11046896 11690703 NA 2 NA NA 2 NA 643807 NA 11 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO21 12 117141988 117190531 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO22 15 75903859 75942510 FALSE 492 -0.226543951235523 57 75468765 76202218 0.158317833115363 3 NA 0.158317833115363 3 NA 733453 NA 10 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO24 7 100583982 100601117 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 15 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO25 8 406428 477967 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO27 19 38990714 39032785 FALSE 647 -0.439700824472697 39 38869641 39110047 NA 2 NA NA 2 NA 240406 NA 10 6 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO28 1 224114087 224162047 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO3 11 33740939 33774543 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO30 6 145793502 145814753 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 10 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO31 16 87326987 87392142 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO32 8 123497889 123541206 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO33 14 39397669 39432500 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 8 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO34 14 55271303 55361918 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 9 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO36 2 229922302 230013109 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 4 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO38 5 148383935 148442836 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 23 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO39 17 6776223 6797101 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO4 5 41925254 41941743 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO40 3 121593119 121630295 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO41 2 73254682 73284431 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO42 1 16246839 16352454 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 14 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO43 8 100133360 100145800 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO44 1 11654375 11663327 FALSE 10 -0.472587818930969 39 11046896 11690703 NA 2 NA NA 2 NA 643807 NA 11 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO45 3 196568611 196589059 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO46 19 45710629 45730904 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO47 17 38936432 38967402 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO48 2 68459419 68467258 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO5 6 152970519 152983579 FALSE 224 -0.117433393604286 66 152211521 156776133 0.330876988437597 3 0 0.330876988437597 3 0 4564612 3 15 8 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO6 1 11664124 11674354 FALSE 10 -0.472587818930969 39 11046896 11690703 NA 2 NA NA 2 NA 643807 NA 11 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO7 22 32474676 32498829 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO8 4 174236658 174284264 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXO9 6 53051991 53100873 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXW10 17 18744024 18779349 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 19 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXW11 5 171861549 172006873 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXW12 3 48372219 48401259 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXW2 9 120751978 120793412 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXW4 10 101610664 101695295 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXW5 9 136940435 136944696 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 10 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXW7 4 152320544 152536063 TRUE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 44 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXW8 12 116910956 117031148 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FBXW9 19 12688053 12696643 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 12 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCAMR 1 206957965 206970625 FALSE 39 -0.126177318869813 67 206934439 207582013 0.31995059840763 3 NA 0.31995059840763 3 NA 647574 NA 10 12 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCAR 19 54874248 54890472 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 7 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCER1A 1 159289714 159308224 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCER1G 1 161215234 161220699 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCER2 19 7688758 7702146 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 12 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCF1 14 74713144 74738620 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 8 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCGBP 19 39863323 39934626 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 63 10 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCGR1A 1 149782671 149792518 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCGR1B 1 121087345 121096310 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCGR2A 1 161505430 161524013 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCGR2B 1 161663147 161678654 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCGR3A 1 161541759 161550737 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCGR3B 1 161623196 161631963 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCGRT 19 49506816 49526333 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCHO1 19 17747718 17788568 FALSE 631 -0.336770470038871 46 17611815 17784844 NA 2 NA NA 2 NA 173029 NA 3 28 3 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCHO2 5 72955981 73090522 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 26 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCHSD1 5 141639302 141651419 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCHSD2 11 72836745 73142261 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCMR 1 206904386 206923247 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCN1 9 134905890 134917963 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCN2 9 134880812 134887520 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCN3 1 27369112 27374824 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCRL1 1 157794403 157820105 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCRL2 1 157745733 157777132 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCRL3 1 157674321 157700857 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCRL4 1 157573749 157598080 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCRL5 1 157513377 157552520 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 24 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCRL6 1 159800511 159816251 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 13 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCRLA 1 161706972 161714352 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 9 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FCRLB 1 161721563 161728143 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FDCSP 4 70226071 70235252 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FDFT1 8 11795573 11839309 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FDPS 1 155308748 155320666 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FDX1 11 110429883 110464881 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FDX2 19 10310045 10316015 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FDXACB1 11 111874056 111881243 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FDXR 17 74862497 74873031 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 14 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FECH 18 57548283 57586772 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FEM1A 19 4791681 4801273 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FEM1B 15 68277803 68295865 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FEM1C 5 115520908 115544894 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FEN1 11 61792637 61797244 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FER 5 108747822 109196841 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FER1L5 2 96642737 96704887 FALSE 73 0.130965048807663 86 96195440 96642849 0.360033220093454 4 NA 0.360033220093454 4 NA 447409 NA 10 51 2 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FER1L6 8 123851987 124120061 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 41 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FERD3L 7 19144782 19145421 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 3 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FERMT1 20 6074845 6123544 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 14 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FERMT2 14 52857268 52952435 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 15 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FERMT3 11 64206678 64223886 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FES 15 90883695 90895776 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FETUB 3 186635969 186653141 FALSE 135 0.383017234579865 101 186047790 186677676 0.397448435712946 5 NA 0.397448435712946 5 NA 629886 NA 9 9 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FEV 2 218981087 218985657 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FEZ1 11 125442881 125592568 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FEZ2 2 36531805 36646087 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 16 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FEZF1 7 122301394 122310691 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FEZF2 3 62369681 62374324 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FFAR1 19 35351552 35353862 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FFAR2 19 35443907 35451767 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FFAR3 19 35358460 35360485 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FFAR4 10 93566665 93604480 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGA 4 154583126 154590766 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGB 4 154562956 154571086 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGD1 23 54445454 54496166 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 23 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGD2 6 37005646 37029070 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 17 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGD3 9 92947451 93036236 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGD4 12 32399529 32646050 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGD5 3 14810853 14934565 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 29 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGD6 12 95076749 95217482 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 28 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF1 5 142592178 142698070 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 21 8 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF10 5 44303544 44389706 FALSE 165 0.25174883805697 97 43494554 44303658 0.39968910724052 4 NA 0.39968910724052 4 NA 809104 NA 4 12 1 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF11 17 7438273 7444937 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF12 3 192139395 192767764 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF13 23 138614731 139222777 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF14 13 101710804 102402457 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 60 8 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF16 23 77447405 77457278 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF17 8 22042398 22048809 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF18 5 171419656 171457623 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF19 11 69698232 69704642 FALSE 356 0.582187674739794 105 69641403 70149798 0.397448435712946 6 NA 0.397448435712946 6 NA 508395 NA 6 8 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF2 4 122826708 122898236 FALSE 153 0.618694253936378 107 122826762 122922331 0.397448435712946 7 NA 0.397448435712946 7 NA 95569 NA 2 26 8 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF20 8 16992169 17002181 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF21 19 48755559 48758333 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF22 19 639879 644371 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF23 12 4368227 4379728 FALSE 378 0.86368839094413 113 4269828 4445792 0.397448435712946 8 NA 0.397448435712946 8 NA 175964 NA 5 14 2 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF3 11 69809969 69819024 FALSE 356 0.582187674739794 105 69641403 70149798 0.397448435712946 6 NA 0.397448435712946 6 NA 508395 NA 6 5 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF4 11 69771016 69775403 FALSE 356 0.582187674739794 105 69641403 70149798 0.397448435712946 6 NA 0.397448435712946 6 NA 508395 NA 6 14 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF5 4 80266599 80336680 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 20 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF6 12 4428155 4445614 FALSE 378 0.86368839094413 113 4269828 4445792 0.397448435712946 8 NA 0.397448435712946 8 NA 175964 NA 5 5 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF7 15 49423096 49488775 FALSE 485 1.34104694114566 121 49423343 49488724 0.397448435712946 13 NA 0.397448435712946 13 NA 65381 NA 2 24 2 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF8 10 101770130 101780369 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGF9 13 21671383 21704498 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 17 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGFBP1 4 15935569 15938740 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGFBP2 4 15960243 15969309 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGFBP3 10 91906589 91909483 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGFR1 8 38400215 38468834 FALSE 267 -1.15795240632236 18 38392639 38429293 0.39968910724052 0 0 0.39968910724052 0 0 36654 0 2 171 25 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGFR1OP 6 166999182 167094789 FALSE 228 -0.0936034159017556 66 165280135 167136462 0.330876988437597 3 0 0.330876988437597 3 0 1856327 3 12 14 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGFR1OP2 12 26938383 26966650 FALSE 395 1.05231732428215 116 26055418 27646129 0.397448435712946 10 NA 0.397448435712946 10 NA 1590711 NA 13 6 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGFR2 10 121478334 121598458 FALSE 338 0.566782833688636 105 120905357 121841237 0.397448435712946 6 NA 0.397448435712946 6 NA 935880 NA 3 158 12 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGFR3 4 1793293 1808872 FALSE 142 0.0353806292410739 77 1699590 2008986 0.252310779181821 4 NA 0.252310779181821 4 NA 309396 NA 7 32 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGFR4 5 177086886 177098144 FALSE 179 -0.193620495435686 57 177081978 177257163 0.158317833115363 3 NA 0.158317833115363 3 NA 175185 NA 2 22 6 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGFRL1 4 1009936 1026897 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 9 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGG 4 154604134 154612967 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGGY 1 59296638 59810647 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGL1 8 17864380 17910365 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGL2 7 77193371 77199848 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FGR 1 27612064 27635277 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FH 1 241497603 241519761 TRUE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FHAD1 1 15247272 15400283 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 31 7 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FHDC1 4 152936352 152979696 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FHIT 3 59749310 61251459 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FHL1 23 136146702 136211359 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FHL2 2 105357712 105438513 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FHL3 1 37996770 38005606 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FHL5 6 96562548 96616636 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FHOD1 16 67229387 67247658 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 26 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FHOD3 18 36297714 36780055 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 36 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FIBCD1 9 130902438 130939286 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FIBIN 11 26994184 26996121 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FIBP 11 65883741 65888539 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FICD 12 108515185 108525837 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FIG4 6 109691312 109825428 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 23 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FIGLA 2 70777310 70790643 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FIGN 2 163593396 163736012 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FIGNL1 7 50444128 50542535 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 21 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FIGNL2 12 51817840 51848766 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FILIP1 6 75291859 75493738 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FILIP1L 3 99830141 100114513 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FIP1L1 4 53377643 53460861 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FIS1 7 101239458 101252316 FALSE 243 -0.216974721306157 57 101087510 101616208 0.158317833115363 3 NA 0.158317833115363 3 NA 528698 NA 13 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FITM1 14 24131275 24132849 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FITM2 20 44302838 44311169 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FIZ1 19 55591371 55601970 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FJX1 11 35618419 35620868 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBP10 17 41812680 41823217 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBP11 12 48921518 48926474 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBP14 7 30010587 30026684 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 4 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBP15 9 113161006 113221361 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 32 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBP1A 20 1368978 1393172 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBP1B 2 24049701 24063681 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBP2 11 64241003 64244132 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBP3 14 45115600 45135319 FALSE 451 -0.0664108785456086 67 44505506 45130739 0.31995059840763 3 NA 0.31995059840763 3 NA 625233 NA 6 7 0 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBP4 12 2794953 2805423 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBP5 6 35573585 35728583 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBP6 7 73328164 73358637 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBP7 2 178463664 178478600 FALSE 89 -0.503631193706026 35 177420363 178547579 0.252021069663427 1 0 0.252021069663427 1 0 1127216 1 11 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBP8 19 18531751 18544077 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBP9 7 32957404 33006931 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 13 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKBPL 6 32128707 32130291 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKRP 19 46746046 46776988 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 10 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FKTN 9 105558130 105641118 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLAD1 1 154983338 154993111 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLCN 17 17212212 17237188 TRUE 544 -0.432476680468626 39 16223200 17212252 NA 2 NA NA 2 NA 989052 NA 14 30 7 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLG 1 152302175 152325203 FALSE 30 -1.0065224812273 20 152085351 152410539 0.381347761373373 0 0 0.381347761373373 0 0 325188 0 7 46 2 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLG2 1 152348735 152360006 FALSE 30 -1.0065224812273 20 152085351 152410539 0.381347761373373 0 0 0.381347761373373 0 0 325188 0 7 29 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLI1 11 128686535 128813267 FALSE 373 0.704775300636153 111 126449052 128812881 0.397448435712946 7 NA 0.397448435712946 7 NA 2363829 NA 3 22 1 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLII 17 18244836 18258916 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 30 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLNA 23 154348524 154374638 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 52 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLNB 3 58008400 58172251 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 57 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLNC 7 128830377 128859274 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 55 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLOT1 6 30727709 30742733 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 12 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLOT2 17 28879335 28897679 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLRT1 11 64103188 64119173 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLRT2 14 85530144 85654426 FALSE 460 0.12444651269489 86 81145505 88469683 0.360033220093454 4 NA 0.360033220093454 4 NA 7324178 NA 10 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLRT3 20 14322988 14337616 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLT1 13 28300344 28495145 FALSE 430 0.468082405963645 104 28015579 28659157 0.397448435712946 6 NA 0.397448435712946 6 NA 643578 NA 4 61 5 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLT3 13 28003274 28100592 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 32 4 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLT3LG 19 49474207 49486231 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLT4 5 180601506 180649624 FALSE 182 0.260639720850134 97 180601699 180792915 0.39968910724052 4 NA 0.39968910724052 4 NA 191216 NA 3 40 4 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLVCR1 1 212858255 212899363 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLVCR2 14 75578617 75663214 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 18 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLYWCH1 16 2911937 2951208 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 15 4 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FLYWCH2 16 2883186 2899382 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 3 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FMC1 7 139339457 139346319 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FMN1 15 32765545 33194733 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 34 8 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FMN2 1 240014348 240475189 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 32 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FMNL1 17 45221444 45247320 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 27 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FMNL2 2 152335237 152649834 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 27 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FMNL3 12 49636499 49708165 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 39 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FMO1 1 171248471 171285978 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FMO2 1 171185208 171211230 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FMO3 1 171090877 171117819 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 11 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FMO4 1 171314208 171342084 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FMO5 1 147175351 147243050 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FMOD 1 203340628 203351758 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FMR1 23 147911951 147951125 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FMR1NB 23 147981329 148026667 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FN1 2 215360440 215436172 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 53 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FN3K 17 82735575 82751197 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 7 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FN3KRP 17 82716683 82730328 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNBP1 9 129887187 130043194 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 17 2 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNBP1L 1 93448131 93554661 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNBP4 11 47716517 47767443 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 20 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNDC1 6 159169397 159272109 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 33 12 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNDC10 1 1598012 1600096 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 2 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNDC11 20 63547891 63556708 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNDC3A 13 48975912 49209779 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 29 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNDC3B 3 172039628 172401665 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 28 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNDC4 2 27491883 27495245 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNDC5 1 32862268 32872482 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNDC7 1 108712657 108742740 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 16 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNDC8 17 35121579 35130732 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNDC9 5 157341600 157345721 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNIP1 5 131641714 131797063 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNIP2 4 158769138 158908049 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNTA 8 43034194 43085788 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FNTB 14 64986720 65062652 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 19 1 TRUE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FO393400.1 20 32632183 32743567 FALSE 689 0.316430543791893 99 32330098 32885548 0.361681390833996 5 NA 0.361681390833996 5 NA 555450 NA 9 11 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOCAD 9 20658309 20995955 FALSE 284 0.644211299957687 108 20341784 20715367 0.397448435712946 7 NA 0.397448435712946 7 NA 373583 NA 2 45 3 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOLH1 11 49146635 49208670 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 21 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOLR1 11 72189558 72196323 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOLR2 11 72216601 72221950 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOLR3 11 72114869 72139892 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOPNL 16 15865720 15888625 FALSE 520 0.439189613580741 103 15617487 16203579 0.397448435712946 5 NA 0.397448435712946 5 NA 586092 NA 7 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOS 14 75278774 75282230 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOSB 19 45467995 45475179 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOSL1 11 65892049 65900573 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOSL2 2 28392448 28417312 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXA1 14 37589984 37596059 TRUE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 14 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXA2 20 22581005 22585455 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXA3 19 45863989 45873797 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXB1 15 60004222 60061730 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXB2 9 77019655 77020953 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXC1 6 1609972 1613897 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXC2 16 86566829 86569728 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXD1 5 73444827 73448527 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXD2 1 47436017 47440691 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXD3 1 63323041 63325126 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXD4 9 116231 118204 FALSE 279 -0.548195418860268 34 14889 214478 0.312402751065481 1 0 0.312402751065481 1 0 199589 1 4 6 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXD4L1 2 113498665 113501155 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXD4L3 9 68302867 68304905 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 4 1 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXD4L4 9 65736555 65738784 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 2 1 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXD4L5 9 65282101 65285209 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 4 2 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXD4L6 9 41126430 41128463 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 2 1 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXE1 9 97853254 97856715 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXE3 1 47416072 47418052 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXF1 16 86510527 86515418 TRUE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXF2 6 1389576 1395603 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXG1 14 28760330 28770277 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXH1 8 144473412 144476335 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXI1 5 170105897 170109725 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXI2 10 127737235 127741186 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXI3 2 88446787 88452656 FALSE 71 0.0815929456248537 82 88067910 95104630 0.298111653356898 4 NA 0.298111653356898 4 NA 7036720 NA 11 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXJ1 17 76136333 76141299 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXJ2 12 8032703 8055503 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXJ3 1 42176539 42335877 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXK1 7 4682309 4771443 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXK2 17 82519713 82644662 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 20 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXL1 16 86576368 86582160 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXL2 3 138944224 138947140 TRUE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXL2NB 3 138947234 138953451 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXM1 12 2857681 2877155 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXN1 17 28506243 28538896 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXN2 2 48314637 48379294 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXN3 14 89124871 89619149 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXN4 12 109277979 109309220 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXO1 13 40469953 40666597 TRUE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 36 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXO3 6 108559835 108684774 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 9 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXO4 23 71096197 71103535 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 8 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXO6 1 41361922 41383590 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXP1 3 70952817 71583993 TRUE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 65 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXP2 7 114086327 114693772 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXP3 23 49250436 49264826 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 11 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXP4 6 41546426 41602384 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXQ1 6 1312440 1314748 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 5 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXR1 11 118971707 118981291 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXR2 23 55623400 55625325 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXRED1 11 126269055 126278131 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXRED2 22 36487190 36507101 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FOXS1 20 31844301 31845619 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FPGS 9 127794597 127814327 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 14 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FPGT 1 74198212 74234086 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FPGT-TNNI3K 1 74198235 74544393 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 35 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FPR1 19 51745172 51804110 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FPR2 19 51752026 51770526 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FPR3 19 51795163 51826189 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRA10AC1 10 93667883 93702572 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRAS1 4 78057570 78544269 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 82 10 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRAT1 10 97319267 97321915 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRAT2 10 97332497 97334709 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FREM1 9 14734666 14910995 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 44 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FREM2 13 38687129 38887131 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 49 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FREM3 4 143577302 143700675 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 27 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRG1 4 189940788 189963204 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 9 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRG2 4 190024351 190027257 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRG2B 10 133623895 133626795 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 5 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRG2C 3 75664330 75667220 FALSE 120 -0.312005481177926 46 74369420 75738577 NA 2 NA NA 2 NA 1369157 NA 3 5 4 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRK 6 115931149 116060758 FALSE 209 1.00705073494122 115 113860534 115944330 0.397448435712946 10 NA 0.397448435712946 10 NA 2083796 NA 4 9 0 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRMD1 6 168053166 168101511 FALSE 229 0.162833614043837 88 167136718 168061946 0.3914153250654 4 2 0.3914153250654 4 2 925228 2 9 16 2 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRMD3 9 83242990 83538546 FALSE 293 -0.328784635523128 44 81990823 84670815 0.213873728132233 2 0 0.213873728132233 2 0 2679992 2 12 20 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRMD4A 10 13643706 14462142 FALSE 315 0.228244116357697 94 12828838 14820149 0.39968910724052 4 NA 0.39968910724052 4 NA 1991311 NA 13 28 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRMD4B 3 69169990 69542583 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 26 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRMD5 15 43870761 44195252 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 18 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRMD6 14 51489100 51730727 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 15 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRMD7 23 132076993 132128020 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 16 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRMD8 11 65386599 65413525 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRMPD1 9 37651000 37746904 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 27 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRMPD2 10 48153088 48274870 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 30 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRMPD3 23 107522450 107605251 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 29 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRMPD4 23 12138466 12724523 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 26 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRRS1 1 99708632 99766631 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRRS1L 9 109130293 109167295 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRS2 12 69470349 69579789 FALSE 414 1.43736421225612 122 69470390 69579778 0.397448435712946 14 NA 0.397448435712946 14 NA 109388 NA 1 31 4 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRS3 6 41770176 41786542 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRY 13 31846713 32299122 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 67 3 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRYL 4 48497361 48780322 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 66 3 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FRZB 2 182833275 182867162 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSBP 8 94372170 94436952 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 19 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSCB 14 44504342 44507279 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 10 1 TRUE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSCN1 7 5592823 5606655 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSCN2 17 81528396 81537130 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSCN3 7 127591409 127602144 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSD1 19 4304600 4323843 FALSE 600 -0.234869927794019 51 4175145 4306008 NA 2 NA NA 2 NA 130863 NA 7 14 3 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSD1L 9 105447796 105552433 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 16 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSD2 15 82755362 82806070 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 16 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSHB 11 30231016 30235261 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSHR 2 48962157 49154537 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 14 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSIP1 15 39588357 39782830 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 27 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSIP2 2 185738895 185833290 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 94 20 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FST 5 53480409 53487134 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSTL1 3 120392293 120451253 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSTL3 19 676365 683399 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSTL4 5 133196455 133612564 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FSTL5 4 161383897 162164035 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FTCD 21 46136262 46155567 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FTCDNL1 2 199760544 199851173 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 5 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FTH1 11 61959718 61967660 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FTHL17 23 31071241 31072053 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FTL 19 48965301 48966878 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FTMT 5 121851955 121852833 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FTO 16 53701692 54158512 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FTSJ1 23 48476021 48486364 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 10 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FTSJ3 17 63819433 63830012 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUBP1 1 77944055 77979110 TRUE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 41 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUBP3 9 130578965 130638352 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 19 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUCA1 1 23845077 23868294 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUCA2 6 143494811 143511690 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUK 16 70454421 70480274 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 26 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUNDC1 23 44523639 44543001 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUNDC2 23 155025980 155060303 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUOM 10 133355154 133358035 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FURIN 15 90868592 90883458 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUS 16 31180110 31194871 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUT1 19 48748011 48755390 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUT10 8 33370824 33473422 FALSE 265 -1.01258309430305 21 32769486 33503438 0.383364652758899 0 0 0.383364652758899 0 0 733952 0 3 8 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUT11 10 73772291 73780251 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUT2 19 48695971 48705950 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 4 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUT3 19 5842888 5851474 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUT4 11 94543840 94549898 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUT5 19 5865826 5870540 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUT6 19 5830610 5839731 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUT7 9 137030174 137033010 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUT8 14 65410592 65744121 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 12 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUT9 6 96015984 96215612 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FUZ 19 49806869 49817376 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FXN 9 69035259 69120427 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FXR1 3 180868141 180982753 FALSE 128 0.146934569885818 86 179242975 181712000 0.360033220093454 4 NA 0.360033220093454 4 NA 2469025 NA 14 17 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FXR2 17 7591230 7614871 FALSE 540 -0.560247871447121 34 7559238 7654707 0.312402751065481 1 0 0.312402751065481 1 0 95469 1 12 18 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FXYD1 19 35138808 35143109 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FXYD2 11 117800844 117828698 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FXYD3 19 35115879 35124324 FALSE 640 -0.147583171664558 62 34943608 35134626 0.235629703240478 3 NA 0.235629703240478 3 NA 191018 NA 8 8 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FXYD4 10 43371642 43376335 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FXYD5 19 35154730 35169883 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 8 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FXYD6 11 117836976 117877486 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FXYD6-FXYD2 11 117820163 117876667 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FXYD7 19 35143250 35154301 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FYB1 5 39105255 39274528 FALSE 163 0.217967294840045 94 39021010 39202890 0.39968910724052 4 NA 0.39968910724052 4 NA 181880 NA 2 23 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FYB2 1 56718804 56819696 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 23 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FYCO1 3 45917899 45995824 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 32 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FYN 6 111660332 111873452 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 24 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FYTTD1 3 197737179 197787596 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FZD1 7 91264364 91271326 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FZD10 12 130162459 130165740 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FZD2 17 44557459 44559570 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FZD3 8 28494205 28574268 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FZD4 11 86945679 86955391 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FZD5 2 207762586 207769563 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FZD6 8 103298433 103332866 FALSE 273 0.0471800530858091 82 102651830 103432781 0.298111653356898 4 NA 0.298111653356898 4 NA 780951 NA 9 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FZD7 2 202034587 202038445 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FZD8 10 35638249 35642278 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FZD9 7 73433783 73436120 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 FZR1 19 3506273 3538330 FALSE 597 -0.316308503877712 46 3155904 3648696 NA 2 NA NA 2 NA 492792 NA 16 14 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 G0S2 1 209675420 209676388 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 G2E3 14 30559123 30620063 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 16 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 G3BP1 5 151771045 151812785 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 G3BP2 4 75642782 75724525 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 G6PC 17 42900797 42913369 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 G6PC2 2 168901240 168910000 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 G6PC3 17 44070735 44076344 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 G6PD 23 154531390 154547572 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 19 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAA 17 80101556 80119879 FALSE 570 -0.251638265228374 50 80089734 80476396 1 2 1 1 2 1 386662 1 9 22 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAB1 4 143336762 143474568 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAB2 11 78215297 78418348 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAB3 23 154675249 154751583 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAB4 22 16961936 17008222 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABARAP 17 7240014 7242770 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABARAPL1 12 10212458 10223130 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABARAPL2 16 75566351 75577881 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABBR1 6 29555629 29633976 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 31 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABBR2 9 98288082 98709197 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 20 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABPA 21 25734570 25772460 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABPB1 15 50275392 50355408 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABPB2 1 151070578 151125542 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRA1 5 161847063 161899981 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRA2 4 46248427 46475230 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRA3 23 152166234 152451358 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRA4 4 46918900 46994407 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRA5 15 26866363 26949207 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRA6 5 161547063 161702593 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRB1 4 46993723 47426444 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRB2 5 161288429 161549044 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRB3 15 26543546 26939539 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 19 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRD 1 2019298 2030758 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRE 23 151953124 151974680 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRG1 4 46035769 46124081 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRG2 5 162000057 162162977 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRG3 15 26971282 27541991 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRP 5 170763350 170814047 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRQ 23 152638183 152657534 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRR1 6 89177501 89231278 FALSE 202 -0.0287117028264841 72 88941203 89712641 0.211382613745547 4 NA 0.211382613745547 4 NA 771438 NA 11 12 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRR2 6 89257208 89315299 FALSE 202 -0.0287117028264841 72 88941203 89712641 0.211382613745547 4 NA 0.211382613745547 4 NA 771438 NA 11 10 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GABRR3 3 97986673 98035304 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAD1 2 170813213 170861151 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 18 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAD2 10 26216307 26304558 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GADD45A 1 67685061 67688338 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GADD45B 19 2476122 2478259 FALSE 594 0.361599717529754 101 2405415 2717768 0.397448435712946 5 NA 0.397448435712946 5 NA 312353 NA 6 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GADD45G 9 89605013 89606555 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GADD45GIP1 19 12953119 12957236 FALSE 620 0.246971120530574 97 12876151 13116391 0.39968910724052 4 NA 0.39968910724052 4 NA 240240 NA 12 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GADL1 3 30726200 30894765 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAGE1 23 49589496 49608536 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAGE10 23 49303669 49319844 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAGE12G 23 49570434 49577754 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 1 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAGE12J 23 49322057 49329384 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 2 1 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAGE2A 23 49589529 49596827 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 2 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAGE2E 23 49341192 49345922 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 1 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAK 4 849276 932373 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 32 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAL 11 68683779 68691175 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAL3ST1 22 30554635 30574587 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAL3ST2 2 241776825 241804208 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAL3ST3 11 66041952 66049180 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAL3ST4 7 100159244 100168750 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 7 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALC 14 87837820 87993665 FALSE 460 0.12444651269489 86 81145505 88469683 0.360033220093454 4 NA 0.360033220093454 4 NA 7324178 NA 10 19 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALE 1 23795599 23800804 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALK1 17 75751594 75765711 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 23 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALK2 15 49155656 49367869 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALM 2 38665910 38741237 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 7 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNS 16 88813734 88856970 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT1 18 35581117 35711834 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 12 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT10 5 154190730 154420984 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT11 7 152025674 152122347 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT12 9 98807699 98850081 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT13 2 153871913 154453849 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT14 2 30910467 31155202 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 18 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT15 3 16174649 16231992 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT16 14 69259277 69357033 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 15 5 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT17 7 71132169 71713600 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT18 11 11270876 11622005 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT2 1 230057990 230282124 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT3 2 165747591 165794682 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT4 12 89519408 89524806 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT5 2 157257598 157314211 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT6 12 51351247 51392867 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT7 4 173168753 173323967 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT8 12 4720341 4851927 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNT9 12 132196372 132329349 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNTL5 7 151956379 152019934 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALNTL6 4 171812254 173041559 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALP 19 56176020 56185775 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALR1 18 77250549 77277896 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALR2 17 76074794 76077541 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALR3 22 37823382 37825495 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GALT 9 34638133 34651035 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 11 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAMT 19 1397026 1401570 FALSE 588 -0.407207315662724 39 1356453 1397505 NA 2 NA NA 2 NA 41052 NA 3 6 1 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAN 16 81314947 81390884 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GANAB 11 62624826 62646726 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GANC 15 42273233 42356935 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 29 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAP43 3 115623324 115721490 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAPDH 12 6533927 6538374 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAPDHS 19 35533412 35545316 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAPT 5 58491435 58497090 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAPVD1 9 125261794 125367207 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 31 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAR1 4 109815510 109824740 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAREM1 18 32124877 32470484 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 32 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAREM2 2 26173091 26189663 FALSE 56 0.00177645496183448 77 25244133 26472685 0.252310779181821 4 NA 0.252310779181821 4 NA 1228552 NA 12 14 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GARNL3 9 127224265 127393660 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 29 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GARS 7 30594681 30634033 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 18 2 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GART 21 33503931 33543491 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 22 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAS1 9 86944363 86947189 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAS2 11 22625509 22813055 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAS2L1 22 29306582 29312785 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAS2L2 17 35744511 35752878 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAS2L3 12 100573683 100628286 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 13 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAS6 13 113820549 113864067 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAS7 17 9910609 10198551 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAS8 16 90019629 90044975 FALSE 535 0.126990432456591 86 89733549 90075852 0.360033220093454 4 NA 0.360033220093454 4 NA 342303 NA 12 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GAST 17 41712326 41715969 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 2 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GATA1 23 48786554 48794311 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 9 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GATA2 3 128479427 128493185 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 27 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GATA3 10 8045378 8075203 TRUE 313 1.14823765061524 117 7965596 8075089 0.397448435712946 11 NA 0.397448435712946 11 NA 109493 NA 2 26 5 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GATA4 8 11676959 11760002 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 21 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GATA5 20 62463497 62475970 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GATA6 18 22169443 22202528 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 19 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GATAD1 7 92447448 92459432 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GATAD2A 19 19385826 19508931 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GATAD2B 1 153789030 153923360 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GATB 4 151670504 151761023 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GATC 12 120446438 120463749 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GATD1 11 767220 777488 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 7 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GATM 15 45361124 45402327 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GBA 1 155234452 155244699 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GBA2 9 35736866 35749228 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 21 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GBE1 3 81489699 81762161 FALSE 121 -0.0206780540273211 77 75738958 89482041 0.252310779181821 4 NA 0.252310779181821 4 NA 13743083 NA 14 17 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GBF1 10 102245532 102382899 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 41 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GBGT1 9 133152948 133163945 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 7 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GBP1 1 89052319 89065360 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GBP2 1 89106132 89150456 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 20 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GBP3 1 89006666 89022894 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GBP4 1 89181148 89198932 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GBP5 1 89258950 89272804 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GBP6 1 89364058 89386461 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GBP7 1 89131751 89176040 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 13 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GBX1 7 151148589 151174745 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GBX2 2 236165236 236168369 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GC 4 71741693 71804041 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCA 2 162318840 162371595 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCAT 22 37807905 37817176 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCC1 7 127580618 127593611 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCC2 2 108448561 108509415 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 33 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCDH 19 12891026 12914207 FALSE 620 0.246971120530574 97 12876151 13116391 0.39968910724052 4 NA 0.39968910724052 4 NA 240240 NA 12 16 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCFC2 2 75652000 75710989 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 24 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCG 2 162142873 162152404 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCGR 17 81804132 81814013 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCH1 14 54842008 54902852 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 9 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCHFR 15 40764020 40767710 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCK 7 44144271 44198170 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCKR 2 27496842 27523684 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCLC 6 53497341 53616970 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCLM 1 93885205 93909456 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCM1 6 53126964 53148829 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCM2 6 10873223 10881941 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCN1 12 120127203 120194710 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 62 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCNA 23 71578411 71613583 FALSE 715 -0.659931446909816 29 71291831 71671196 0.39968910724052 0 NA 0.39968910724052 0 0 379365 0 7 16 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCNT1 9 76419850 76651203 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCNT2 6 10492223 10629368 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCNT3 15 59594875 59640239 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCNT4 5 75025346 75030899 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCNT7 20 56491492 56525925 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 12 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCOM1 15 57591908 57714745 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCSAM 3 112120841 112133305 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCSAML 1 247507058 247577690 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 9 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCSAML-AS1 1 247524679 247532613 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GCSH 16 81081938 81096425 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDA 9 72114595 72257193 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDAP1 8 74321130 74488872 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDAP1L1 20 44247099 44280917 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDAP2 1 117863485 117929630 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDE1 16 19501689 19522145 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDF1 19 18868545 18896096 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDF10 10 47300386 47313547 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDF11 12 55743280 55757278 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDF15 19 18374731 18389176 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDF2 10 47322490 47326270 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDF3 12 7689782 7695776 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDF5 20 35433347 35454746 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDF6 8 96142330 96160792 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDF7 2 20666664 20679245 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDF9 5 132861181 132866884 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDI1 23 154436913 154443467 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDI2 10 5765223 5842132 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDNF 5 37812677 37839686 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDPD1 17 59220467 59275967 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDPD2 23 70423031 70433390 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 15 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDPD3 16 30104810 30113856 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDPD4 11 77216558 77301687 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDPD5 11 75434640 75525903 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GDPGP1 15 90233808 90245811 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GEM 8 94249253 94262350 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GEMIN2 14 39114223 39136973 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 10 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GEMIN4 17 744414 753999 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GEMIN5 5 154887416 154938209 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GEMIN6 2 38751534 38785000 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GEMIN7 19 45079195 45091524 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 2 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GEMIN8 23 14008279 14029893 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GEN1 2 17753858 17788941 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 38 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GET4 7 876552 896436 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFAP 17 44903161 44916937 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFER 16 1984207 1987749 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFI1 1 92474762 92486876 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFI1B 9 132944000 132991687 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFM1 3 158644278 158692575 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 25 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFM2 5 74721204 74767371 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 21 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFOD1 6 13357830 13487662 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 7 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFOD2 16 67674531 67719421 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFPT1 2 69319769 69387254 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFPT2 5 180300690 180353387 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 19 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFRA1 10 116056925 116273467 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFRA2 8 21690403 21812357 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFRA3 5 138252379 138274671 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFRA4 20 3659292 3663399 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFRAL 6 55327469 55402493 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GFY 19 49423749 49428818 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGA1 22 37608475 37633564 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGA2 16 23463542 23521995 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 17 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGA3 17 75236599 75262363 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 21 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGACT 13 100530164 100589528 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGCT 7 30496621 30504844 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 5 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGCX 2 85544723 85561547 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 16 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGH 8 63015079 63039171 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGN 19 38384265 38388082 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGNBP2 17 36544888 36589848 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGPS1 1 235327350 235344532 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGT1 22 24583750 24629005 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGT2 22 21207973 21227637 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGT5 22 24219654 24245142 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGT6 17 4556927 4560818 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 8 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGT7 20 34844720 34872860 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGTLC1 20 23985050 23988779 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GGTLC2 22 22644475 22647903 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GH1 17 63917200 63918838 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GH2 17 63880215 63881935 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GHDC 17 42188799 42194532 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GHITM 10 84139440 84153245 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GHR 5 42423777 42721878 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GHRH 20 37251082 37261835 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GHRHR 7 30938669 30993254 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 13 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GHRL 3 10285675 10292947 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GHSR 3 172445133 172448456 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GID4 17 18039292 18068404 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 20 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GID8 20 62938119 62948475 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIF 11 59829268 59845501 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIGYF1 7 100679507 100694037 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 23 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIGYF2 2 232697299 232860575 FALSE 106 0.545664806611778 105 232662878 232974659 0.397448435712946 6 NA 0.397448435712946 6 NA 311781 NA 5 33 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIMAP1 7 150716557 150724284 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIMAP1-GIMAP5 7 150716668 150743646 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 11 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIMAP2 7 150685697 150693641 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIMAP4 7 150567277 150573955 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIMAP5 7 150722253 150750033 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 6 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIMAP6 7 150625375 150632648 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIMAP7 7 150514830 150521073 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 4 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIMAP8 7 150450630 150479392 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 10 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIMD1 4 106357485 106368825 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIN1 5 103086000 103120151 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GINM1 6 149566294 149591748 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GINS1 20 25407727 25452628 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GINS2 16 85676198 85690073 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GINS3 16 58295080 58406144 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GINS4 8 41529206 41545046 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIP 17 48958554 48968596 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIPC1 19 14477760 14496149 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIPC2 1 77979542 78138449 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIPC3 19 3585553 3593541 FALSE 597 -0.316308503877712 46 3155904 3648696 NA 2 NA NA 2 NA 492792 NA 16 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIPR 19 45668244 45683724 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIT1 17 29573469 29594054 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GIT2 12 109929792 109996389 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 22 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJA1 6 121435577 121449727 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJA10 6 89894469 89921760 FALSE 203 -0.328974867549418 46 89713302 90586867 NA 2 NA NA 2 NA 873565 NA 5 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJA3 13 20138255 20161049 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJA4 1 34792998 34795747 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJA5 1 147756199 147773362 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJA8 1 147907956 147909257 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJA9 1 38874451 38881587 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJA9-MYCBP 1 38864501 38881617 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJB1 23 71215194 71225516 FALSE 714 -0.111342206574026 67 71118719 71290781 0.31995059840763 2 NA 0.31995059840763 2 NA 172062 NA 5 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJB2 13 20187463 20193010 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJB3 1 34781189 34786369 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJB4 1 34759741 34763724 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJB5 1 34755047 34758512 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJB6 13 20221962 20232395 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJB7 6 87282978 87329278 FALSE 201 -0.221189436484543 57 87265553 88929289 0.158317833115363 3 NA 0.158317833115363 3 NA 1663736 NA 12 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJC1 17 44798448 44830816 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJC2 1 228149852 228159826 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJC3 7 99923269 99929620 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJD2 15 34751032 34754965 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJD3 17 40362931 40363815 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJD4 10 35605410 35608935 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GJE1 6 142133090 142135151 FALSE 220 0.0543375783167098 82 138298662 142443515 0.298111653356898 4 NA 0.298111653356898 4 NA 4144853 NA 16 4 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GK 23 30653359 30731456 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 21 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GK2 4 79406352 79408293 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GK5 3 142157527 142225607 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 16 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GKAP1 9 83739421 83829516 FALSE 293 -0.328784635523128 44 81990823 84670815 0.213873728132233 2 0 0.213873728132233 2 0 2679992 2 12 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GKN1 2 68974573 68980974 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GKN2 2 68945232 68952970 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLA 23 101397803 101408012 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLB1 3 32996608 33097230 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLB1L 2 219236606 219245478 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLB1L2 11 134331874 134378341 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLB1L3 11 134274245 134319564 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLCCI1 7 7968794 8094272 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLCE 15 69160584 69272217 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLDC 9 6532464 6645783 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 26 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLDN 15 51341629 51408013 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLE1 9 128504700 128542288 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLG1 16 74447427 74607144 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 29 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLI1 12 57460135 57472262 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLI2 2 120735623 120992653 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 28 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLI3 7 41960950 42237870 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 25 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLI4 8 143267433 143276931 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLIPR1 12 75480680 75503853 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLIPR1L1 12 75334639 75370560 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLIPR1L2 12 75391070 75432688 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLIPR2 9 36136536 36163913 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLIS1 1 53506237 53738106 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLIS2 16 4314761 4339597 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLIS3 9 3824127 4348392 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLMN 1 92246402 92298987 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLMP 1 156290089 156295689 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLO1 6 38675925 38703141 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLOD4 17 757097 783390 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLOD5 23 48761750 48773648 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLP1R 6 39048798 39087743 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLP2R 17 9822206 9892102 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 14 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLRA1 5 151822513 151924842 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLRA2 23 14529298 14731812 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 12 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLRA3 4 174636914 174829314 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLRA4 23 103707224 103728655 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLRB 4 157076057 157172090 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLRX 5 95751319 95823005 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 11 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLRX2 1 193090866 193106114 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLRX3 10 130136399 130184521 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 11 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLRX5 14 95533503 95544724 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLS 2 190880827 190965552 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 20 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLS2 12 56470944 56488414 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLT1D1 12 128853427 128984968 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLT6D1 9 135623656 135639540 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLT8D1 3 52694488 52706032 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLT8D2 12 103988984 104064183 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLTP 12 109850943 109880488 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLTPD2 17 4788959 4790390 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLUD1 10 87050486 87094866 FALSE 329 -0.116680330790243 67 86927969 87862413 0.31995059840763 3 NA 0.31995059840763 3 NA 934444 NA 13 15 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLUD2 23 121047588 121050080 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLUL 1 182381704 182392206 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLYAT 11 58640426 58731974 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLYATL1 11 58905398 59043527 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLYATL1B 11 59086307 59094786 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLYATL2 11 58834065 58904215 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLYATL3 6 49499958 49527047 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLYCTK 3 52287089 52293476 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GLYR1 16 4803203 4847342 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GM2A 5 151212150 151270440 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMCL1 2 69829642 69881396 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMCL2 5 178184503 178187432 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMDS 6 1623806 2245692 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMEB1 1 28668732 28719353 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMEB2 20 63587602 63627041 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMFB 14 54474484 54489196 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMFG 19 39328353 39342372 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMIP 19 19629476 19643667 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GML 8 142834247 142916506 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 22 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMNC 3 190852877 190892429 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMNN 6 24774931 24786099 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMPPA 2 219498867 219506989 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMPPB 3 49716844 49723951 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMPR 6 16238580 16295549 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMPR2 14 24232422 24239242 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GMPS 3 155870536 155944026 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 16 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNA11 19 3094410 3124004 FALSE 596 0.803685063773141 112 3094790 3151793 0.397448435712946 8 NA 0.397448435712946 8 NA 57003 NA 2 18 8 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNA12 7 2728112 2844324 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNA13 17 65010715 65056839 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNA14 9 77423079 77648307 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNA15 19 3136193 3163769 FALSE 596 0.803685063773141 112 3094790 3151793 0.397448435712946 8 NA 0.397448435712946 8 NA 57003 NA 2 8 3 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNAI1 7 79768028 80226181 FALSE 236 0.496193817902199 104 78017165 81770105 0.397448435712946 6 NA 0.397448435712946 6 NA 3752940 NA 6 8 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNAI2 3 50226292 50259355 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNAI3 1 109548611 109618321 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNAL 18 11688956 11885685 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNAO1 16 56191347 56357457 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNAQ 9 77716087 78031458 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 28 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNAS 20 58839718 58911192 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 45 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNAT1 3 50191612 50196516 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNAT2 1 109603267 109619929 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNAT3 7 80458671 80512020 FALSE 236 0.496193817902199 104 78017165 81770105 0.397448435712946 6 NA 0.397448435712946 6 NA 3752940 NA 6 8 2 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNAZ 22 23070361 23125037 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNB1 1 1785285 1891117 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNB1L 22 19783224 19854939 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNB2 7 100673531 100679174 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNB3 12 6839954 6847393 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 8 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNB4 3 179396089 179451590 FALSE 128 0.146934569885818 86 179242975 181712000 0.360033220093454 4 NA 0.360033220093454 4 NA 2469025 NA 14 9 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNB5 15 52115105 52191369 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNE 9 36214441 36277056 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 15 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNG10 9 111661335 111670246 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNG11 7 93921699 93928610 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNG12 1 67701466 67833467 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 2 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNG13 16 798041 800733 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNG14 19 12687998 12688422 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 2 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNG2 14 51826195 51979342 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 2 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNG3 11 62707658 62709201 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNG4 1 235547687 235650754 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNG5 1 84498325 84506565 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNG7 19 2511219 2702709 FALSE 594 0.361599717529754 101 2405415 2717768 0.397448435712946 5 NA 0.397448435712946 5 NA 312353 NA 6 2 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNG8 19 46634076 46634685 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNGT1 7 93591573 93911265 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNGT2 17 49202791 49210574 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNL1 6 30541377 30557174 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 15 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNL2 1 37566816 37595935 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNL3 3 52681156 52694492 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNL3L 23 54530211 54561071 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 16 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNLY 2 85685175 85698854 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 6 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNMT 6 42960758 42963880 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNPAT 1 231241207 231277973 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNPDA1 5 141991749 142013041 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNPDA2 4 44682200 44726595 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNPNAT1 14 52775194 52791668 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNPTAB 12 101745497 101830938 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 26 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNPTG 16 1351923 1364113 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNRH1 8 25419260 25424654 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNRH2 20 3043622 3045747 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNRHR 4 67739328 67754360 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GNS 12 64713445 64759447 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA1 9 124878357 124948492 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 21 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA2 9 128255829 128275995 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 27 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA3 12 132768909 132828858 FALSE 427 0.237104219097234 97 132687678 132861490 0.39968910724052 4 NA 0.39968910724052 4 NA 173812 NA 5 31 4 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA4 3 37243177 37366751 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 42 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA5 14 92794231 92839963 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA6A 15 74069857 74082550 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA6B 15 72654738 72666394 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 9 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA6C 15 75258599 75270199 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 11 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA6D 15 75282835 75295807 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 8 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA6L10 15 82339998 82349475 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 7 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA6L2 15 23439498 23447234 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA6L22 15 22458903 22469230 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA6L4 15 84235773 84245368 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 2 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA6L6 15 20531856 20541800 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA7 8 41490396 41510980 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA7B 10 97850239 97871580 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA8A 15 34379068 34437466 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA8B 15 34525207 34588503 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 5 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA8F 15 28378621 28392018 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA8G 15 28519611 28533014 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA8H 15 30604126 30614561 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 18 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA8J 15 30083053 30093499 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA8K 15 32392782 32403292 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 16 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA8M 15 28701954 28738384 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 15 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA8N 15 32593456 32607310 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA8O 15 32445106 32455634 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 9 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA8Q 15 30552078 30562501 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 11 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA8R 15 30403740 30414162 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 5 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA8S 15 23354748 23367231 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 11 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGA8T 15 30135149 30145567 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 6 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLGB1 3 121663199 121749767 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 48 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLIM4 3 168008677 168095975 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLM1 9 86026146 86100173 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLPH3 5 32124704 32174350 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLPH3L 1 150646225 150697144 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLT1A 1 204198160 204214092 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOLT1B 12 21501781 21518408 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 7 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GON4L 1 155749662 155859400 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 42 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GON7 14 93202894 93207094 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOPC 6 117560269 117602542 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GORAB 1 170532129 170553446 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GORASP1 3 39096659 39108363 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GORASP2 2 170928464 170967129 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOSR1 17 30477362 30527592 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOSR2 17 46923075 46975524 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOT1 10 99396870 99431569 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOT1L1 8 37934281 37940129 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GOT2 16 58707131 58734357 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 10 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GP1BA 17 4932297 4935030 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GP1BB 22 19722945 19724771 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GP2 16 20309572 20327808 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 13 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GP5 3 194394821 194398354 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GP6 19 55013705 55038264 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GP9 3 129060767 129062406 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPA33 1 167052836 167166479 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPAA1 8 144082590 144086216 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPALPP1 13 44989529 45037669 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPAM 10 112149864 112215377 FALSE 336 0.281281646454176 97 110567687 113628982 0.39968910724052 4 NA 0.39968910724052 4 NA 3061295 NA 14 21 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPANK1 6 31661229 31666283 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 5 1 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPAT2 2 96021946 96039451 FALSE 72 -0.297431743288301 44 95106429 96195026 0.213873728132233 2 0 0.213873728132233 2 0 1088597 2 15 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPAT3 4 83535914 83605875 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPAT4 8 41577187 41625001 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPATCH1 19 33080880 33130542 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPATCH11 2 37084451 37099244 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPATCH2 1 217426992 217631082 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPATCH2L 14 76151916 76254342 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 14 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPATCH3 1 26890488 26900466 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPATCH4 1 156594487 156601496 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPATCH8 17 44395284 44503430 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 22 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPBAR1 2 218259496 218263859 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPBP1 5 57173948 57264679 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPBP1L1 1 45627304 45688113 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPC1 2 240435671 240468078 FALSE 109 -0.204551948627658 52 240042747 240874079 0.261858812358373 3 1 0.261858812358373 3 1 831332 2 13 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPC2 7 100169606 100177372 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPC3 23 133535745 133985895 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPC4 23 133300103 133415490 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPC5 13 91398607 92873682 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPC6 13 93226842 94407401 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPCPD1 20 5544404 5611026 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPD1 12 50103819 50111319 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPD1L 3 32105689 32168713 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPD2 2 156435290 156613735 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPER1 7 1082208 1093815 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 5 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPHA2 11 64934471 64935888 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPHB5 14 63312835 63318879 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 2 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPHN 14 66507407 67181803 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 24 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPI 19 34359480 34402413 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPIHBP1 8 143213193 143217170 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 6 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPKOW 23 49113389 49123801 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 11 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPLD1 6 24424565 24495205 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 26 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPM6A 4 175632934 176002664 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPM6B 23 13771031 13938638 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 10 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPN1 2 27628247 27651508 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPN2 1 26876133 26890297 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPN3 12 110452484 110469268 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPNMB 7 23235967 23275108 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 13 2 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR1 2 206175316 206218047 FALSE 98 -0.534538327599125 34 206124310 206587285 0.312402751065481 1 0 0.312402751065481 1 0 462975 1 5 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR101 23 137030148 137031674 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR107 9 130053426 130140169 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 19 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR108 19 6729914 6737603 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 17 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR119 23 130384440 130385447 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR12 13 26755200 26760785 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR132 14 105049389 105065445 FALSE 474 -0.136925231270881 62 104993000 105529597 0.235629703240478 3 NA 0.235629703240478 3 NA 536597 NA 15 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR135 14 59429022 59465342 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR137 11 64270062 64289500 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR137B 1 236142505 236221865 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR137C 14 52553148 52637713 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 8 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR139 16 20031485 20073917 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR141 7 37683796 37833788 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR142 17 74367407 74372622 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR143 23 9725346 9786297 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 10 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR146 7 1044576 1059261 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 4 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR148 2 130729070 130730336 FALSE 84 -0.292186070013859 45 130656603 132790182 1 2 1 1 2 1 2133579 1 16 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR149 3 154337672 154429715 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 11 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR15 3 98531899 98533150 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR150 5 95620078 95622142 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR151 5 146513103 146516190 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR152 11 67451301 67452729 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR153 1 6247346 6260975 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR155 2 174431571 174487094 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 18 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR156 3 120164645 120285094 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR157 1 9100305 9129170 FALSE 7 0.18541391362799 90 8324498 9691530 0.275334878251284 5 NA 0.275334878251284 5 NA 1367032 NA 12 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR158 10 25174802 25602226 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR160 3 170037929 170085403 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR161 1 168079543 168137667 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR162 12 6821545 6829972 FALSE 381 -0.0962006740122522 67 6638345 6823870 0.31995059840763 3 NA 0.31995059840763 3 NA 185525 NA 10 12 1 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR17 2 127645864 127652639 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR171 3 151197832 151203201 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR173 23 53049091 53080615 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR174 23 79144663 79175315 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR176 15 39799032 39920892 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR179 17 38325530 38343847 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 34 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR18 13 99254714 99261744 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR180 13 94601903 94634645 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR182 12 56994446 56998441 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR183 13 99294530 99307405 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR19 12 12660891 12696207 FALSE 387 -0.113542447011735 67 12079487 12714097 0.31995059840763 3 NA 0.31995059840763 3 NA 634610 NA 7 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR20 8 141356500 141367267 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR21 9 123034527 123035696 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR22 7 107470018 107475659 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR25 1 200872955 200874178 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR26 10 123666355 123694607 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR27 3 71754050 71756496 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR3 1 27392644 27395814 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR31 6 167156271 167158329 FALSE 229 0.162833614043837 88 167136718 168061946 0.3914153250654 4 2 0.3914153250654 4 2 925228 2 9 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR32 19 50770464 50771732 FALSE 671 0.319009489173821 99 50630099 50948696 0.361681390833996 5 NA 0.361681390833996 5 NA 318597 NA 14 5 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR33 14 31482875 31488142 FALSE 449 -0.090252011740912 67 31387284 34807549 0.31995059840763 3 NA 0.31995059840763 3 NA 3420265 NA 14 4 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR34 23 41688973 41697277 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR35 2 240605431 240631259 FALSE 109 -0.204551948627658 52 240042747 240874079 0.261858812358373 3 1 0.261858812358373 3 1 831332 2 13 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR37 7 124745997 124765627 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR37L1 1 202122858 202133592 FALSE 37 0.422972367154532 103 202010393 202741677 0.397448435712946 5 NA 0.397448435712946 5 NA 731284 NA 9 7 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR39 2 132416574 132646559 FALSE 84 -0.292186070013859 45 130656603 132790182 1 2 1 1 2 1 2133579 1 16 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR4 19 45589764 45602208 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR42 19 35370929 35372962 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR45 2 105241743 105243049 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR50 23 151176653 151181465 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR52 1 174448111 174449198 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR55 2 230907318 230961066 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR6 6 109978256 109980718 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR61 1 109539872 109548406 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR62 3 51955314 51957504 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR63 6 96794126 96837463 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR65 14 88005124 88014811 FALSE 460 0.12444651269489 86 81145505 88469683 0.360033220093454 4 NA 0.360033220093454 4 NA 7324178 NA 10 5 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR68 14 91232532 91253925 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR75 2 53852913 53859989 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR75-ASB3 2 53670293 53860160 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 36 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR78 4 8558725 8619761 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 21 8 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR82 23 41724155 41730135 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR83 11 94377311 94401419 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR84 12 54362445 54364487 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR85 7 113078331 113087778 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR87 3 151294086 151316952 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 6 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR88 1 100538137 100542018 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR89A 1 145607990 145670648 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPR89B 1 147928393 147993521 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPRASP1 23 102651366 102659083 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPRASP2 23 102712176 102717733 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPRC5A 12 12890782 12917937 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPRC5B 16 19856691 19886167 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPRC5C 17 74424851 74451653 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPRC5D 12 12940775 12952147 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPRC6A 6 116792085 116829037 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 15 4 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPRIN1 5 176595802 176610133 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 12 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPRIN2 10 46549044 46555530 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 5 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPRIN3 4 89236386 89308010 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPS1 17 82050691 82057470 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 17 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPS2 17 7311324 7315564 TRUE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPSM1 9 136327476 136359605 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPSM2 1 108875350 108934545 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPSM3 6 32190766 32195523 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 7 0 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPT 8 144502973 144507174 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPT2 16 46884378 46931297 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPX2 14 64939152 64942905 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 3 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPX3 5 151020438 151028993 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPX4 19 1103926 1106791 FALSE 587 0.217691882461168 93 1042394 1299919 0.39968910724052 4 1 0.39968910724052 4 1 257525 3 12 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPX5 6 28525925 28534952 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPX6 6 28503296 28528215 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPX7 1 52602372 52609051 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GPX8 5 55160118 55167071 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRAMD1A 19 34994784 35026471 FALSE 640 -0.147583171664558 62 34943608 35134626 0.235629703240478 3 NA 0.235629703240478 3 NA 191018 NA 8 23 4 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRAMD1B 11 123358428 123627774 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRAMD1C 3 113828182 113947174 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRAMD2A 15 72159807 72197785 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRAMD2B 5 126360132 126496494 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRAMD4 22 46576012 46679790 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRAP 17 19020673 19047637 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRAP2 22 39901082 39973721 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRASP 12 52006940 52015889 FALSE 406 0.935115292659676 114 51913120 52007182 0.397448435712946 9 NA 0.397448435712946 9 NA 94062 NA 3 9 0 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRB10 7 50590063 50793462 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 19 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRB14 2 164492812 164621848 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 16 2 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRB2 17 75318076 75405709 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRB7 17 39737927 39747291 FALSE 550 0.588438690170753 105 39461721 39864123 0.397448435712946 6 NA 0.397448435712946 6 NA 402402 NA 11 14 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GREB1 2 11482341 11642788 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 39 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GREB1L 18 21242242 21525417 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 35 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GREM1 15 32717974 32745107 FALSE 476 0.611530227125791 107 32718058 32744949 0.397448435712946 7 NA 0.397448435712946 7 NA 26891 NA 1 46 9 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GREM2 1 240489573 240612149 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRHL1 2 9951693 10002277 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 17 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRHL2 8 101492432 101669726 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRHL3 1 24319322 24364482 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 21 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRHPR 9 37422666 37436990 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIA1 5 153489615 153813869 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIA2 4 157204182 157366075 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIA3 23 123184153 123490915 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 22 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIA4 11 105609994 105982092 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRID1 10 85599555 86366493 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRID2 4 92303622 93810157 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 19 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRID2IP 7 6497462 6551436 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 25 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIFIN 7 2474844 2476894 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIK1 21 29536933 29940033 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIK2 6 101181257 102070083 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIK3 1 36795527 37034129 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIK4 11 120511700 120988904 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 21 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIK5 19 41998321 42069498 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 25 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIN1 9 137138390 137168762 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 22 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIN2A 16 9753404 10182754 TRUE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 75 7 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIN2B 12 13437942 13981957 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 26 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIN2C 17 74842023 74861504 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 20 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIN2D 19 48394875 48444931 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIN3A 9 101569353 101738580 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 20 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIN3B 19 1000419 1009732 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 17 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRINA 8 143990058 143993415 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 7 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIP1 12 66347431 67069162 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 26 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIP2 3 14489111 14556075 FALSE 114 0.679912694587704 108 14416453 14523026 0.397448435712946 7 NA 0.397448435712946 7 NA 106573 NA 2 26 6 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRIPAP1 23 48973720 49002264 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 24 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRK1 13 113667155 113737735 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRK2 11 67266410 67286556 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRK3 22 25564849 25729294 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRK4 4 2963608 3040747 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRK5 10 119207589 119459742 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRK6 5 177403204 177442901 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 30 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRK7 3 141778148 141818490 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 9 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRM1 6 146027646 146437598 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 20 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRM2 3 51707070 51718613 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRM3 7 86643914 86864884 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRM4 6 34018645 34155622 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 20 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRM5 11 88504576 89065945 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRM6 5 178977587 178996206 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRM7 3 6770001 7741533 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 16 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRM8 7 126438598 127253294 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRN 17 44345086 44353102 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRP 18 59220168 59230774 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRPEL1 4 7058906 7068197 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRPEL2 5 149345430 149354583 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRPR 23 16123556 16153021 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRSF1 4 70815782 70839945 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRTP1 13 113324164 113364148 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRWD1 19 48445773 48457022 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRXCR1 4 42893267 43030658 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GRXCR2 5 145858521 145937126 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSAP 7 77310751 77416400 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 31 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSC 14 94768216 94770230 FALSE 463 -0.464555355125233 39 94463259 95086236 NA 2 NA NA 2 NA 622977 NA 8 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSC2 22 19148576 19150283 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSDMA 17 39953263 39977766 FALSE 551 -0.178633749129299 62 39868328 40193677 0.235629703240478 3 NA 0.235629703240478 3 NA 325349 NA 13 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSDMB 17 39904595 39919854 FALSE 551 -0.178633749129299 62 39868328 40193677 0.235629703240478 3 NA 0.235629703240478 3 NA 325349 NA 13 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSDMC 8 129748196 129786888 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSDMD 8 143553207 143563062 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 10 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSDME 7 24698351 24758113 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 11 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSE1 16 85169525 85676204 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 26 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSG1 12 13083560 13103683 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSG1L 16 27787535 28063509 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSG1L2 17 9802386 9822071 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSK3A 19 42230186 42242625 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 12 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSK3B 3 119821323 120094417 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 37 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSKIP 14 96363452 96387288 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSN 9 121207794 121332843 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 22 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSPT1 16 11868128 11916082 FALSE 517 -0.0362540617203195 72 11676092 11941161 0.211382613745547 4 NA 0.211382613745547 4 NA 265069 NA 6 16 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSPT2 23 51743431 51746232 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSR 8 30678061 30727999 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 14 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSS 20 34928433 34956027 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTA1 6 52791664 52803910 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTA2 6 52750089 52763569 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTA3 6 52896639 52909685 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTA4 6 52977948 52995378 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTA5 6 52831655 52846095 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTCD 4 105708778 105847728 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTK1 7 143244093 143270854 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTM2 1 109668022 109709551 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTM3 1 109733932 109741038 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTM4 1 109656081 109674836 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTM5 1 109711780 109775428 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 34 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTO1 10 104235356 104267459 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTO2 10 104268873 104304945 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTP1 11 67583595 67586656 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTT2B 22 23957414 23961186 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTT4 22 23998401 24005453 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 5 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSTZ1 14 77320884 77331597 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 9 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSX1 13 27792643 27794768 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GSX2 4 54099523 54102505 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 5 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTDC1 2 143938068 144332568 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 11 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2A1 14 81175452 81221377 FALSE 460 0.12444651269489 86 81145505 88469683 0.360033220093454 4 NA 0.360033220093454 4 NA 7324178 NA 10 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2A1L 2 48617798 48733148 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 26 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2A2 15 59638062 59657541 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2B 1 88852932 88891944 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2E1 3 120742637 120783069 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2E2 8 30578318 30658251 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2F1 19 6379569 6393981 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2F2 13 45120515 45284909 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2H1 11 18322295 18367044 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2H2 5 71032670 71067689 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2H2C 5 69560208 69594723 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2H3 12 123633739 123662606 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2H4 6 30908184 30914106 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2H5 6 158168350 158199344 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2I 7 74657667 74760692 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2IRD1 7 74453790 74602604 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2IRD2 7 74796144 74851551 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF2IRD2B 7 75092573 75149817 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF3A 13 27424544 27435823 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF3C1 16 27459555 27549913 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 45 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF3C2 2 27325849 27357034 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF3C3 2 196763032 196799725 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 19 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF3C4 9 132670035 132694955 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 14 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF3C5 9 133030675 133058503 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTF3C6 6 110958560 110967890 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTPBP1 22 38705723 38738299 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTPBP10 7 90335223 90391455 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTPBP2 6 43605316 43629162 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTPBP3 19 17334920 17342735 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 11 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTPBP4 10 988019 1019936 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 19 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTPBP8 3 112990918 113015060 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTSE1 22 46296741 46330810 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTSF1 12 54455950 54473602 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GTSF1L 20 43726164 43726998 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUCA1A 6 42155406 42180056 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUCA1B 6 42184401 42194916 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUCA1C 3 108907792 108953895 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 4 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUCA2A 1 42162691 42164718 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUCA2B 1 42153421 42155824 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUCD1 22 24540423 24555935 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUCY1A1 4 155666711 155732349 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUCY1A2 11 106674012 107018524 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUCY1B1 4 155758992 155807591 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUCY2C 12 14612632 14696585 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 30 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUCY2D 17 8002594 8020339 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 21 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUCY2F 23 109372906 109482072 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 23 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUF1 4 44678427 44700926 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUK1 1 228139962 228148984 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GULP1 2 188291669 188595931 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GUSB 7 65960684 65982314 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GVQW2 6 138725211 138773652 FALSE 220 0.0543375783167098 82 138298662 142443515 0.298111653356898 4 NA 0.298111653356898 4 NA 4144853 NA 16 2 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GVQW3 11 76381313 76414619 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GXYLT1 12 42081845 42144879 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 8 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GXYLT2 3 72888073 72998138 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GYG1 3 148991341 149027668 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GYG2 23 2828788 2882820 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 11 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GYPA 4 144109303 144140786 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GYPB 4 143996104 144019345 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GYPC 2 126655933 126696670 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GYPE 4 143870867 143905563 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GYS1 19 48968125 48993310 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GYS2 12 21536189 21604847 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 17 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GZF1 20 23362182 23373063 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GZMA 5 55102648 55110252 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GZMB 14 24630954 24634267 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 6 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GZMH 14 24606480 24609699 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GZMK 5 55024253 55034570 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 GZMM 19 544034 549924 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 6 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H1F0 22 37805093 37807436 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H1FNT 12 48328980 48330279 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H1FOO 3 129543214 129551467 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H1FX 3 129314771 129316277 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H2AFB1 23 154884972 154885558 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H2AFJ 12 14774383 14778002 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H2AFV 7 44826791 44848083 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H2AFX 11 119093854 119095467 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H2AFY 5 135333900 135399914 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H2AFY2 10 70052796 70112280 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H2AFZ 4 99948086 99950388 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H2BFM 23 104039949 104042454 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H2BFS 21 5972924 43565648 FALSE 693 0.397034508268135 103 10413729 10603577 0.397448435712946 5 NA 0.397448435712946 5 NA 189848 NA 2 1823 154 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H2BFWT 23 104011147 104013687 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H3.Y 5 17654870 17655847 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H3F3A 1 226061851 226072001 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 14 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H3F3B 17 75776434 75785893 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H3F3C 12 31791185 31792241 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 H6PD 1 9234775 9271337 FALSE 7 0.18541391362799 90 8324498 9691530 0.275334878251284 5 NA 0.275334878251284 5 NA 1367032 NA 12 13 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAAO 2 42767089 42792593 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HABP2 10 113550837 113589602 FALSE 336 0.281281646454176 97 110567687 113628982 0.39968910724052 4 NA 0.39968910724052 4 NA 3061295 NA 14 15 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HABP4 9 96450201 96491336 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 9 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HACD1 10 17589032 17617377 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HACD2 3 123490820 123585185 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HACD3 15 65530418 65578352 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HACD4 9 20999515 21031636 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 8 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HACE1 6 104728093 104859919 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HACL1 3 15560704 15601852 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HADH 4 107989714 108035175 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 10 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HADHA 2 26190635 26244726 FALSE 56 0.00177645496183448 77 25244133 26472685 0.252310779181821 4 NA 0.252310779181821 4 NA 1228552 NA 12 20 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HADHB 2 26243170 26290468 FALSE 56 0.00177645496183448 77 25244133 26472685 0.252310779181821 4 NA 0.252310779181821 4 NA 1228552 NA 12 17 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAGH 16 1795620 1827194 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAGHL 16 726936 735525 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 16 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAL 12 95972662 95996365 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 20 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAMP 19 35280716 35285143 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAND1 5 154474972 154478264 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAND2 4 173524969 173530229 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAO1 20 7882981 7940474 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAO2 1 119368779 119394130 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAP1 17 41717742 41734644 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAPLN1 5 83637805 83721613 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 7 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAPLN2 1 156619294 156625725 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAPLN3 15 88877288 88895626 FALSE 499 -0.326925020976481 44 88857449 89702022 0.213873728132233 2 0 0.213873728132233 2 0 844573 2 13 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAPLN4 19 19255641 19262796 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HARBI1 11 46602861 46617909 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HARS 5 140673904 140691862 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HARS2 5 140691426 140699318 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAS1 19 51713112 51723994 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAS2 8 121612116 121641390 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAS3 16 69105564 69118719 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HASPIN 17 3723903 3726699 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAT1 2 171922448 171983682 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAUS1 18 46104332 46128333 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 9 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAUS2 15 42548810 42569994 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAUS3 4 2227464 2242164 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAUS4 14 22946228 22957161 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAUS5 19 35612744 35625349 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 18 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAUS6 9 19053143 19103119 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 21 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAUS7 23 153447666 153495516 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAUS8 19 17049729 17075625 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 12 2 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAVCR1 5 157029413 157059119 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAVCR2 5 157085832 157142869 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 19 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HAX1 1 154272511 154275875 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HBA1 16 176680 177522 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HBA2 16 172876 173710 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HBB 11 5225464 5229395 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 3 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HBD 11 5232678 5243657 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 3 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HBE1 11 5268345 5505652 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 45 4 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HBEGF 5 140332843 140346631 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HBG1 11 5248079 5249859 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 2 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HBG2 11 5253190 5505605 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 48 4 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HBM 16 153892 166768 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HBP1 7 107168961 107202529 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HBQ1 16 180453 181181 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HBS1L 6 134960378 135103056 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HBZ 16 152687 154503 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCAR1 12 122726076 122730843 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCAR2 12 122701293 122703343 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCAR3 12 122714756 122716892 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 5 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCCS 23 11111301 11123078 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCFC1 23 153947553 153971807 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 40 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCFC1R1 16 3022620 3024286 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCFC2 12 104064457 104106524 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 16 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCK 20 32052188 32101856 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCLS1 3 121631399 121660927 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCN1 5 45254950 45696498 FALSE 166 0.271579430422026 97 44304029 50797082 0.39968910724052 4 NA 0.39968910724052 4 NA 6493053 NA 5 14 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCN2 19 589893 617159 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 13 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCN3 1 155277583 155289848 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCN4 15 73319859 73369264 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 18 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCRT 17 42184060 42185452 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCRTR1 1 31617686 31632518 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCRTR2 6 55106460 55282620 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HCST 19 35902480 35904377 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDAC1 1 32292086 32333635 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDAC10 22 50245183 50251405 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDAC11 3 13479724 13506424 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDAC2 6 113933028 114011308 FALSE 209 1.00705073494122 115 113860534 115944330 0.397448435712946 10 NA 0.397448435712946 10 NA 2083796 NA 4 46 2 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDAC3 5 141620876 141636870 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 15 1 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDAC4 2 239048168 239401654 TRUE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 61 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDAC5 17 44076746 44123702 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 29 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDAC6 23 48801377 48824982 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 30 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDAC7 12 47782722 47833132 FALSE 401 0.570076889856971 105 47720770 47968206 0.397448435712946 6 NA 0.397448435712946 6 NA 247436 NA 6 25 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDAC8 23 72329516 72573199 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 13 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDAC9 7 18086949 19002416 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 31 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDC 15 50241947 50266026 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDDC2 6 125219962 125302078 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 13 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDDC3 15 90929964 90935196 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDGF 1 156742107 156766925 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDGFL1 6 22569493 22571666 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDGFL2 19 4472287 4502211 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 19 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDGFL3 15 83112738 83208018 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 15 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDHD2 18 47107403 47150520 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDHD3 9 113373419 113376999 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDHD5 22 17137511 17165287 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 10 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDLBP 2 241227264 241317061 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 31 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HDX 23 84317874 84502479 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEATR1 1 236549005 236604504 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 49 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEATR3 16 50065941 50106387 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 16 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEATR4 14 73478484 73558947 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 33 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEATR5A 14 31291791 31420582 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 37 2 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEATR5B 2 36968383 37084342 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 41 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEATR6 17 60043194 60078931 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 24 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEATR9 17 35854946 35868891 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEBP1 12 12974864 13000273 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEBP2 6 138403531 138422197 FALSE 220 0.0543375783167098 82 138298662 142443515 0.298111653356898 4 NA 0.298111653356898 4 NA 4144853 NA 16 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HECA 6 139135112 139180802 FALSE 220 0.0543375783167098 82 138298662 142443515 0.298111653356898 4 NA 0.298111653356898 4 NA 4144853 NA 16 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HECTD1 14 31100112 31207804 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 52 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HECTD2 10 91409280 91514829 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HECTD3 1 45002540 45011329 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 22 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HECTD4 12 112160188 112382439 FALSE 421 -0.0176554379426518 77 111455010 112163629 0.252310779181821 4 NA 0.252310779181821 4 NA 708619 NA 11 85 1 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HECW1 7 43112599 43566001 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 34 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HECW2 2 196189099 196593692 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 33 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEG1 3 124965710 125055958 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 26 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HELB 12 66302545 66347645 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HELLS 10 94501434 94613905 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 31 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HELQ 4 83407343 83455856 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HELT 4 185018841 185020804 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HELZ 17 67070438 67245989 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 40 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HELZ2 20 63558086 63574239 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 40 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEMGN 9 97926791 97944856 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEMK1 3 50569152 50596168 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HENMT1 1 108648290 108661526 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEPACAM 11 124919193 124936412 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 11 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEPACAM2 7 93188586 93226524 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEPH 23 66162549 66268867 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 24 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEPHL1 11 94021361 94113751 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEPN1 11 124919244 124920677 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 1 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HERC1 15 63608618 63833942 FALSE 487 0.296385928010631 99 61991730 63677860 0.361681390833996 5 NA 0.361681390833996 5 NA 1686130 NA 13 94 5 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HERC2 15 28111040 28322152 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 97 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HERC3 4 88592423 88708542 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 28 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HERC4 10 67921899 68075348 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HERC5 4 88457117 88506163 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 26 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HERC6 4 88378739 88443111 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 25 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HERPUD1 16 56932048 56944863 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HERPUD2 7 35632659 35695571 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HES1 3 194136145 194138732 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HES2 1 6412418 6424670 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HES3 1 6244192 6245578 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HES4 1 998962 1000172 FALSE 1 -0.106716554101356 67 69453 1051961 0.31995059840763 3 NA 0.31995059840763 3 NA 982508 NA 11 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HES5 1 2528745 2530245 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HES6 2 238238267 238240662 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 4 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HES7 17 8120590 8124092 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HESX1 3 57197838 57227606 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEXA 15 72340919 72376476 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEXB 5 74640023 74722647 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEXDC 17 82418318 82442645 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEXIM1 17 45148502 45152101 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEXIM2 17 45160700 45170040 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEY1 8 79764010 79767863 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEY2 6 125747664 125761269 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HEYL 1 39624153 39639945 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HFE 6 26087281 26098343 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 10 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HFM1 1 91260766 91404869 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 40 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HGD 3 120628173 120682571 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HGF 7 81699008 81770438 FALSE 236 0.496193817902199 104 78017165 81770105 0.397448435712946 6 NA 0.397448435712946 6 NA 3752940 NA 6 48 4 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HGFAC 4 3441887 3449495 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HGH1 8 144137769 144140843 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HGS 17 81683326 81703138 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 22 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HGSNAT 8 43140455 43202855 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HHAT 1 210328252 210676296 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HHATL 3 42692663 42702827 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HHEX 10 92689951 92695646 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HHIP 4 144646021 144745271 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HHIPL1 14 99645110 99680569 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HHIPL2 1 222522258 222548103 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HHLA1 8 132061486 132111159 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 18 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HHLA2 3 108296490 108378285 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HHLA3 1 70354805 70385339 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 1 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIBADH 7 27525442 27662995 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 8 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIBCH 2 190189735 190344193 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 16 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIC1 17 2054154 2063241 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIC2 22 21417404 21451463 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HID1 17 74950743 74973166 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 19 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIF1A 14 61695513 61748259 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 18 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIF1AN 10 100529072 100559998 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIF3A 19 46297046 46343433 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 17 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIGD1A 3 42784298 42804531 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIGD1B 17 44846353 44850480 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIGD1C 12 50953922 50970506 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIGD2A 5 176388747 176389771 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 2 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIGD2B 15 72675782 72686149 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIKESHI 11 86302211 86345931 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HILPDA 7 128455849 128458418 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HINFP 11 119121587 119136044 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 11 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HINT1 5 131159027 131171735 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HINT2 9 35812960 35815354 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HINT3 6 125956781 125980244 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIP1 7 75533300 75738962 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 31 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIP1R 12 122834453 122862960 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 31 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIPK1 1 113929192 113977869 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIPK2 7 139561570 139777778 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIPK3 11 33256672 33357023 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIPK4 19 40379271 40390187 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIRA 22 19330698 19447450 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 33 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIRIP3 16 29992321 29996436 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H1A 6 26017085 26017732 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H1B 6 27866849 27867529 TRUE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H1C 6 26055787 26056428 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H1D 6 26234268 26234933 TRUE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H1E 6 26156354 26157107 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H1T 6 26107419 26108136 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 3 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2AA 6 25726132 25726527 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2AB 6 26033176 26033568 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2AC 6 26124145 26139116 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2AD 6 26198851 26199243 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2AE 6 26216975 26217483 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2AG 6 27133042 27135291 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2AH 6 27147129 27147515 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2AI 6 27808199 27808701 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2AJ 6 27814354 27814740 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2AK 6 27837947 27838339 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2AL 6 27865355 27865747 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2AM 6 27892757 27893149 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BA 6 25726777 25727292 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BB 6 26043277 26043657 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BC 6 26114873 26123926 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BD 6 26158146 26171349 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BE 6 26172059 26184655 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BF 6 26199520 26200715 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BG 6 26215159 26216692 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BH 6 26251651 26253710 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BI 6 26272976 26273356 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 1 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BJ 6 27125897 27132750 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BK 6 27146418 27146798 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BL 6 27807444 27807931 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BM 6 27815044 27815424 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BN 6 27837760 27865798 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H2BO 6 27893463 27893843 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H3A 6 26020490 26020900 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H3B 6 26031650 26032060 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H3C 6 26045411 26045821 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H3D 6 26196840 26197250 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H3E 6 26224199 26227473 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 11 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H3F 6 26250195 26250605 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H3G 6 26269405 26271815 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H3H 6 27810064 27811300 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H3I 6 27871905 27872315 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H3J 6 27890382 27893106 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H4A 6 26021679 26021990 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 1 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H4B 6 26026815 26027252 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H4C 6 26103876 26104310 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H4D 6 26188765 26189076 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H4E 6 26204552 26206038 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H4F 6 26240426 26240737 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 1 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H4G 6 26246681 26246977 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H4H 6 26277609 26285638 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 2 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H4I 6 27138588 27139881 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H4J 6 27824108 27824480 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H4K 6 27831216 27831527 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST1H4L 6 27873199 27873510 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST2H2AB 1 149887524 149887916 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST2H2AC 1 149886975 149887364 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST2H2BE 1 149884459 149886652 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST2H2BF 1 149782689 149812373 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST2H3D 1 149813271 149813681 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST2H3PS2 1 143905556 143905966 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST3H2A 1 228456979 228457873 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST3H2BB 1 228458107 228460470 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST3H3 1 228424845 228425325 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIST4H4 12 14767999 14771131 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIVEP1 6 12008762 12164999 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 37 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIVEP2 6 142751467 142956698 FALSE 221 1.01658652644503 115 142751538 142945520 0.397448435712946 10 NA 0.397448435712946 10 NA 193982 NA 1 49 4 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HIVEP3 1 41506365 42035925 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 31 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HJURP 2 233833416 233854566 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HJV 1 146017468 146036746 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HK1 10 69269984 69401884 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HK2 2 74833981 74893359 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 22 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HK3 5 176880869 176899332 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 20 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HKDC1 10 69220303 69267559 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 20 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HKR1 19 37312837 37369365 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 11 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-A 6 29941260 29945884 TRUE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 13 10 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-B 6 31269491 31357188 TRUE 189 -0.0260643675989525 69 31143403 31355632 0.39968910724052 3 1 0.39968910724052 3 1 212229 2 5 27 12 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-C 6 31268749 31272130 FALSE 189 -0.0260643675989525 69 31143403 31355632 0.39968910724052 3 1 0.39968910724052 3 1 212229 2 5 12 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-DMA 6 32948613 32969094 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-DMB 6 32934629 32941070 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-DOA 6 33004178 33009612 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-DOB 6 32812763 32820466 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 11 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-DPA1 6 33064569 33080775 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-DPB1 6 33075926 33087201 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-DQA1 6 32628179 32647062 FALSE 195 -0.605024030620843 30 32302561 32662190 0.37140042022976 1 0 0.37140042022976 1 0 359629 1 7 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-DQA2 6 32741342 32747215 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 9 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-DQB1 6 32659467 32668383 FALSE 195 -0.605024030620843 30 32302561 32662190 0.37140042022976 1 0 0.37140042022976 1 0 359629 1 7 13 0 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-DQB2 6 32756098 32763534 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 11 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-DRA 6 32439842 32445046 FALSE 195 -0.605024030620843 30 32302561 32662190 0.37140042022976 1 0 0.37140042022976 1 0 359629 1 7 8 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-DRB1 6 32578769 32589848 FALSE 195 -0.605024030620843 30 32302561 32662190 0.37140042022976 1 0 0.37140042022976 1 0 359629 1 7 8 8 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-DRB5 6 32517343 32530287 FALSE 195 -0.605024030620843 30 32302561 32662190 0.37140042022976 1 0 0.37140042022976 1 0 359629 1 7 5 5 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-E 6 30489467 30494205 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-F 6 29722775 29738528 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 21 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLA-G 6 29826967 29831125 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 12 7 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLCS 21 36750888 36990236 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLF 17 55265012 55325065 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLTF 3 149030127 149086554 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 26 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HLX 1 220879400 220885059 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HM13 20 31514410 31577923 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMBOX1 8 28890394 29064764 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMBS 11 119084866 119093549 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 14 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMCES 3 129278828 129306186 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMCN1 1 185734551 186190949 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 120 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMCN2 9 130265882 130434123 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 102 5 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMG20A 15 77420412 77485607 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMG20B 19 3572777 3579088 FALSE 597 -0.316308503877712 46 3155904 3648696 NA 2 NA NA 2 NA 492792 NA 16 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGA1 6 34236873 34246231 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGA2 12 65824131 65966295 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGB1 13 30456704 30617597 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGB2 4 173331695 173335125 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGB3 23 150980509 150990775 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGB4 1 33860475 33864791 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGCL 1 23801885 23838620 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGCLL1 6 55434369 55579214 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGCR 5 75336329 75362104 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGCS1 5 43289395 43313512 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGCS2 1 119747996 119768905 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGN1 21 39342315 39349647 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGN2 1 26472450 26475972 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGN3 6 79201245 79234738 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGN4 6 26538405 26546254 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGN5 23 81113701 81201942 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGXB3 5 150000046 150053142 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 26 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMGXB4 22 35257452 35295807 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMHB1 5 143812161 143820719 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMMR 5 163460203 163491945 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMOX1 22 35380361 35394214 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMOX2 16 4474690 4510347 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMSD 18 63949301 63981774 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMX1 4 8846076 8871817 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMX2 10 123148122 123150672 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HMX3 10 123135962 123137741 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNF1A 12 120978543 121002512 TRUE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 26 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNF1B 17 37686432 37745247 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNF4A 20 44355700 44434596 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNF4G 8 75407914 75566843 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 10 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNMT 2 137964020 138016364 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPA0 5 137745651 137754376 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPA1 12 54280193 54287088 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPA1L2 13 52642425 52643796 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPA2B1 7 26173057 26201529 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 19 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPA3 2 177212563 177223958 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 22 0 TRUE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPAB 5 178204507 178211163 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPC 14 21209136 21269494 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPCL1 1 12847408 12848725 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPCL2 1 13115496 13116854 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPD 4 82352498 82374503 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPDL 4 82422564 82430408 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPF 10 43385617 43409166 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPH1 5 179614178 179634784 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPH2 23 101408295 101414133 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPH3 10 68331174 68343191 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPK 9 83968083 83980616 FALSE 293 -0.328784635523128 44 81990823 84670815 0.213873728132233 2 0 0.213873728132233 2 0 2679992 2 12 28 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPL 19 38836388 38852347 FALSE 646 -0.00229584309761491 77 38714572 38869416 0.252310779181821 4 NA 0.252310779181821 4 NA 154844 NA 9 14 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPLL 2 38561978 38603586 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPM 19 8444767 8489114 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 19 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPR 1 23303771 23344336 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPU 1 244840638 244864560 FALSE 44 0.117466813329847 86 243659450 245702541 0.360033220093454 4 NA 0.360033220093454 4 NA 2043091 NA 11 20 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPUL1 19 41262496 41307598 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPUL2 11 62712630 62727472 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HNRNPUL2-BSCL2 11 62690275 62727384 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 32 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOGA1 10 97584323 97612802 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOMER1 5 79372636 79514217 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOMER2 15 82836946 82986153 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOMER3 19 18929201 18941261 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOMEZ 14 23272422 23299447 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOOK1 1 59814786 59876378 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 22 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOOK2 19 12763003 12872740 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 73 5 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOOK3 8 42896932 43030539 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 22 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOPX 4 56647988 56681899 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HORMAD1 1 150698060 150720888 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HORMAD2 22 30080174 30177075 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXA1 7 27092993 27095996 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 5 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXA10 7 27170591 27180261 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 6 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXA11 7 27181510 27185223 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 5 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXA13 7 27193503 27200106 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 6 2 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXA2 7 27100354 27102811 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 6 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXA3 7 27106184 27152581 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 20 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXA4 7 27128507 27130799 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 5 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXA5 7 27141052 27143668 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 4 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXA6 7 27145396 27150603 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 4 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXA7 7 27153716 27157936 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 4 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXA9 7 27162435 27175180 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 10 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXB1 17 48528526 48531001 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXB13 17 48724763 48729178 TRUE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 14 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXB2 17 48540894 48544989 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXB3 17 48548870 48604912 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 17 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXB4 17 48575513 48580111 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXB5 17 48591257 48593961 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXB6 17 48595751 48604992 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXB7 17 48607227 48633572 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 10 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXB8 17 48611377 48614939 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXB9 17 48621159 48626356 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXC10 12 53985065 53990279 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXC11 12 53973126 53977643 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXC12 12 53954834 53958956 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXC13 12 53938765 53946544 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXC4 12 54016931 54056030 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXC5 12 54032853 54035358 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXC6 12 53990624 54030823 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXC8 12 54009106 54012362 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXC9 12 53994895 54003337 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXD1 2 176188579 176190907 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXD10 2 176108790 176119942 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXD11 2 176104216 176109754 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXD12 2 176099730 176101193 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXD13 2 176092891 176095938 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXD3 2 176136612 176173102 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 10 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXD4 2 176151222 176153226 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 4 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXD8 2 176129694 176132695 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HOXD9 2 176122720 176124937 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HP 16 72054592 72061055 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HP1BP3 1 20742661 20787323 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 13 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPCA 1 32885994 32898441 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPCAL1 2 10302889 10427617 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPCAL4 1 39678648 39691689 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPD 12 121839527 121863596 FALSE 423 -0.315985647593647 46 121839804 122003686 NA 2 NA NA 2 NA 163882 NA 4 14 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPDL 1 45326905 45328533 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPF1 4 169729465 169757953 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPGD 4 174490177 174523154 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPGDS 4 94298535 94342876 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPN 19 35040506 35066571 FALSE 640 -0.147583171664558 62 34943608 35134626 0.235629703240478 3 NA 0.235629703240478 3 NA 191018 NA 8 13 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPR 16 72063148 72077246 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 8 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPRT1 23 134460153 134520513 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPS1 10 98416198 98446947 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 19 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPS3 3 149129584 149173732 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 21 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPS4 22 26443423 26483837 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPS5 11 18278668 18322198 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 27 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPS6 10 102065390 102068038 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPSE 4 83292461 83335153 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPSE2 10 98457077 99235862 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HPX 11 6431049 6442617 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HR 8 22114415 22133384 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 24 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HRAS 11 532242 537287 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 8 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HRASLS 3 193241125 193277738 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HRASLS2 11 63552770 63563383 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HRASLS5 11 63461404 63491194 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HRC 19 49151198 49155424 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 12 2 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HRCT1 9 35906192 35907141 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HRG 3 186660216 186678240 FALSE 135 0.383017234579865 101 186047790 186677676 0.397448435712946 5 NA 0.397448435712946 5 NA 629886 NA 9 10 2 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HRH1 3 11137093 11263557 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HRH2 5 175658030 175710756 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HRH3 20 62214970 62220267 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HRH4 18 24460629 24479957 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HRK 12 116856144 116881441 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 1 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HRNR 1 152212082 152224193 FALSE 30 -1.0065224812273 20 152085351 152410539 0.381347761373373 0 0 0.381347761373373 0 0 325188 0 7 29 12 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HS1BP3 2 20560448 20651089 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 6 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HS2ST1 1 86914648 87109998 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HS3ST1 4 11393150 11429765 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HS3ST2 16 22814177 22916338 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HS3ST3A1 17 13495689 13601927 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HS3ST3B1 17 14301083 14349404 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HS3ST4 16 25692026 26137688 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HS3ST5 6 114055586 114343045 FALSE 209 1.00705073494122 115 113860534 115944330 0.397448435712946 10 NA 0.397448435712946 10 NA 2083796 NA 4 5 1 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HS3ST6 16 1911463 1918440 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HS6ST1 2 128236716 128318577 FALSE 82 -0.261392512927958 50 127719285 130373216 1 2 1 1 2 1 2653931 1 15 5 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HS6ST2 23 132626016 132961395 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HS6ST3 13 96090839 96839562 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSBP1 16 83807843 83819737 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSBP1L1 18 79964561 79970822 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSCB 22 28742031 28757515 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD11B1 1 209686178 209734950 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD11B1L 19 5680604 5688523 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD11B2 16 67430652 67437553 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD17B1 17 42549214 42555213 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD17B10 23 53431258 53434373 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD17B11 4 87336610 87391386 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 7 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD17B12 11 43680558 43856617 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD17B13 4 87303789 87322906 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD17B14 19 48813017 48836678 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD17B2 16 82035004 82098534 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD17B3 9 96235306 96302176 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD17B4 5 119452443 119637199 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 32 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD17B6 12 56752161 56787790 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD17B7 1 162790702 162812817 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD17B8 6 33204642 33206831 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 8 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD3B1 1 119507198 119515054 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD3B2 1 119414931 119423035 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSD3B7 16 30985207 30989152 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSDL1 16 84122146 84145192 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSDL2 9 112379937 112472410 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSF1 8 144291591 144314722 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 13 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSF2 6 122399546 122433119 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSF2BP 21 43529192 43659493 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSF4 16 67164681 67169945 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSF5 17 58420167 58488384 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSFX2 23 149592515 149594716 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 2 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSFX3 23 149548210 149549932 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSFX4 23 149929645 149931287 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSH2D 19 16134028 16158575 FALSE 627 -0.490607499224798 35 15728649 16234395 0.252021069663427 1 0 0.252021069663427 1 0 505746 1 13 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSP90AA1 14 102080738 102139699 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSP90AB1 6 44246166 44253888 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSP90B1 12 103930107 103953645 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 22 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPA12A 10 116671192 116850236 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPA12B 20 3732667 3753111 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPA13 21 14371115 14383484 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPA14 10 14838160 14871741 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPA1A 6 31815464 31817946 FALSE 192 0.00493836391948355 77 31761776 31933922 0.252310779181821 4 NA 0.252310779181821 4 NA 172146 NA 16 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPA1B 6 31827735 31830255 FALSE 192 0.00493836391948355 77 31761776 31933922 0.252310779181821 4 NA 0.252310779181821 4 NA 172146 NA 16 4 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPA1L 6 31809619 31815065 FALSE 192 0.00493836391948355 77 31761776 31933922 0.252310779181821 4 NA 0.252310779181821 4 NA 172146 NA 16 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPA2 14 64535905 64546173 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPA4 5 133051962 133106449 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 20 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPA4L 4 127781821 127840733 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPA5 9 125234853 125241330 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPA6 1 161524540 161526910 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPA8 11 123057489 123063230 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPA9 5 138553756 138575724 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPB1 7 76302544 76304295 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPB11 1 53916574 53945929 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPB2 11 111912242 111914093 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPB2-C11orf52 11 111912736 111926871 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPB3 5 54455601 54456384 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 2 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPB6 19 35754569 35758079 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPB7 1 16014028 16019594 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPB8 12 119178642 119221131 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPB9 17 42121431 42123352 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPBAP1 3 122740003 122793824 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPBP1 19 55262231 55280381 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 10 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPD1 2 197486581 197516737 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 16 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPE1 2 197499994 197503457 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPE1-MOB4 2 197500413 197550726 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPG2 1 21822245 21937297 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 108 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HSPH1 13 31134974 31162388 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 21 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTATIP2 11 20363685 20383783 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTATSF1 23 136497079 136512346 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTD2 3 58306262 58318574 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTN1 4 70050402 70058845 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTN3 4 70028413 70036538 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR1A 5 63960356 63962507 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR1B 6 77461753 77463773 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR1D 1 23191895 23194729 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR1E 6 86937306 87016683 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR1F 3 87990696 87993835 FALSE 121 -0.0206780540273211 77 75738958 89482041 0.252310779181821 4 NA 0.252310779181821 4 NA 13743083 NA 14 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR2A 13 46831550 46897076 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR2B 2 231108230 231125118 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR2C 23 114584078 114910061 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR3A 11 113974881 113990313 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR3B 11 113904677 113946565 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR3C 3 184053047 184060671 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR3D 3 184031544 184039369 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR3E 3 184097064 184106995 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR4 5 148451032 148677235 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR5A 7 155070324 155087392 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR6 1 19665287 19679562 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTR7 10 90740823 90857698 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTRA1 10 122458551 122514908 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTRA2 2 74529377 74533348 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTRA3 4 8269765 8307111 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTRA4 8 38974164 38988662 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HTT 4 3041422 3243960 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 68 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HUNK 21 31873315 32044633 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HUS1 7 47963288 47979553 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HUS1B 6 655939 656963 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HUWE1 23 53532096 53686729 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 93 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HVCN1 12 110627841 110704950 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 19 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HYAL1 3 50299889 50312381 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HYAL2 3 50317790 50322906 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HYAL3 3 50292831 50299468 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HYAL4 7 123828983 123877478 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HYDIN 16 70807378 71230722 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 94 5 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HYI 1 43451003 43453989 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 8 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HYKK 15 78507564 78537372 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HYLS1 11 125883614 125900648 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 12 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HYOU1 11 119044189 119057202 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 25 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HYPK 15 43796142 43803043 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 14 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 HYPM 23 37990817 37991317 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 2 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IAH1 2 9473658 9496543 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 13 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IAPP 12 21354959 21379978 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 2 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IARS 9 92210207 92293756 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 33 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IARS2 1 220094102 220148041 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IBA57 1 228165815 228182257 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IBSP 4 87799581 87812435 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 7 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IBTK 6 82169983 82247754 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 31 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ICA1 7 8113184 8262687 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ICA1L 2 202773150 202871985 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ICAM1 19 10270835 10286615 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ICAM2 17 64002594 64020634 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ICAM3 19 10333776 10339823 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 11 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ICAM4 19 10286967 10288522 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ICAM5 19 10289981 10296778 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 17 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ICE1 5 5420664 5490234 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 39 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ICE2 15 60419609 60479160 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 22 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ICK 6 53001279 53061802 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ICMT 1 6221193 6235972 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ICOS 2 203936748 203961577 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ID1 20 31605283 31606515 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ID2 2 8678845 8684453 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ID3 1 23557918 23559794 TRUE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 6 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ID4 6 19837386 19840684 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 3 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IDE 10 92451684 92574076 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IDH1 2 208236227 208266074 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 21 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IDH2 15 90083045 90102504 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IDH3A 15 78131498 78171949 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IDH3B 20 2658395 2664219 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IDH3G 23 153785766 153794523 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IDI1 10 1039152 1049170 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IDI2 10 1018907 1025859 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IDNK 9 83623049 83644130 FALSE 293 -0.328784635523128 44 81990823 84670815 0.213873728132233 2 0 0.213873728132233 2 0 2679992 2 12 6 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IDO1 8 39902275 39928444 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IDO2 8 39934614 40016391 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 12 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IDS 23 149476990 149521096 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IDUA 4 986997 1004506 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 24 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IER2 19 13150415 13154908 FALSE 621 -0.225919342368309 57 13135243 13799725 0.158317833115363 3 NA 0.158317833115363 3 NA 664482 NA 8 3 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IER3 6 30743199 30744554 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IER3IP1 18 47152834 47176374 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 3 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IER5 1 181088712 181092899 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IER5L 9 129175552 129178262 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 5 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFFO1 12 6538375 6556083 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFFO2 1 18904281 18956686 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFI16 1 158999968 159055155 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 16 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFI27 14 94104836 94116698 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFI27L1 14 94081282 94103846 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFI27L2 14 94127779 94130253 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFI30 19 18173162 18178117 FALSE 634 1.19865967518225 118 18153185 18173594 0.397448435712946 11 NA 0.397448435712946 11 NA 20409 NA 3 9 0 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFI35 17 43006725 43014456 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFI44 1 78649796 78664078 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFI44L 1 78619922 78646145 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFI6 1 27666061 27672218 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFIH1 2 162267079 162318703 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFIT1 10 89392546 89406486 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFIT1B 10 89378056 89385205 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFIT2 10 89283694 89309276 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFIT3 10 89327894 89340971 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFIT5 10 89414586 89421001 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFITM1 11 313506 315272 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFITM10 11 1732410 1750591 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFITM2 11 307631 315272 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFITM3 11 319669 327537 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFITM5 11 298200 299526 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNA1 9 21440454 21441316 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNA10 9 21206181 21207143 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 3 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNA13 9 21367424 21368962 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNA14 9 21239002 21239991 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNA16 9 21216373 21217311 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNA17 9 21227243 21228222 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 3 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNA2 9 21384254 21385388 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNA21 9 21165637 21166660 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNA4 9 21186694 21187671 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 3 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNA5 9 21304326 21305312 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 3 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNA6 9 21349835 21351378 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNA7 9 21201469 21202205 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 2 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNA8 9 21409147 21410185 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 2 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNAR1 21 33324477 33359862 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNAR2 21 33229901 33265675 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNB1 9 21077105 21077963 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 2 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNE 9 21480839 21482313 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNG 12 68154768 68159747 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNGR1 6 137197484 137219449 TRUE 219 0.602641570411187 107 137197170 138296943 0.397448435712946 6 NA 0.397448435712946 6 NA 1099773 NA 6 23 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNGR2 21 33402896 33479348 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNK 9 27524314 27526498 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNL1 19 39296325 39298673 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNL2 19 39268514 39270092 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 6 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNL3 19 39243553 39245129 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 6 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNLR1 1 24154157 24187959 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFNW1 9 21140214 21142145 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFRD1 7 112422968 112481017 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFRD2 3 50287732 50292918 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFT122 3 129440036 129520507 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 31 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFT140 16 1510427 1612110 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 36 6 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFT172 2 27444371 27489789 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 49 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFT20 17 28328325 28335489 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFT22 7 101313367 101321823 FALSE 243 -0.216974721306157 57 101087510 101616208 0.158317833115363 3 NA 0.158317833115363 3 NA 528698 NA 13 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFT27 22 36758202 36776256 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFT43 14 75902136 76084585 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 20 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFT46 11 118544528 118572970 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFT52 20 43590931 43647296 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFT57 3 108160812 108222570 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFT74 9 26947039 27062930 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 28 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFT80 3 160256986 160399880 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 19 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFT81 12 110124335 110218797 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 18 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IFT88 13 20567069 20691437 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 27 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGBP1 23 70133449 70166324 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 7 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGDCC3 15 65327127 65378040 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGDCC4 15 65381464 65423072 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 26 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGF1 12 102395874 102481744 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 33 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGF1R 15 98648539 98964530 FALSE 502 0.795790134074636 112 98648936 98969468 0.397448435712946 8 NA 0.397448435712946 8 NA 320532 NA 2 57 9 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGF2 11 2129112 2158658 FALSE 341 0.150532842564489 86 2129151 2776033 0.360033220093454 4 NA 0.360033220093454 4 NA 646882 NA 11 29 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGF2BP1 17 48997412 49055650 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 16 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGF2BP2 3 185643739 185825056 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGF2BP3 7 23310209 23470467 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 16 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGF2R 6 159969099 160113507 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 52 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFALS 16 1790413 1794971 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFBP1 7 45888357 45893668 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFBP2 2 216632828 216664436 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFBP3 7 45912245 45921874 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFBP4 17 40443461 40457731 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFBP5 2 216672105 216695525 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFBP6 12 53097436 53102345 FALSE 408 0.483867645866869 104 52675230 53105164 0.397448435712946 6 NA 0.397448435712946 6 NA 429934 NA 14 5 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFBP7 4 57030773 57110385 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFBPL1 9 38408994 38424447 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFL1 19 46229752 46231243 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFL2 19 46143106 46161299 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFL3 19 46120071 46124674 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFL4 19 46039748 46077118 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFLR1 19 35738801 35742453 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGFN1 1 201190825 201228952 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 57 12 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGHMBP2 11 68903842 68940602 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGIP 5 140125935 140129392 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGLL1 22 23573125 23580308 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGLL5 22 22887780 22896107 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGLON5 19 51311848 51330354 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGSF1 23 131273506 131578899 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 32 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGSF10 3 151425384 151458709 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 36 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGSF11 3 118900557 119146068 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGSF21 1 18107746 18378483 FALSE 16 0.136831934058324 84 16759339 18631648 0.243587385410565 5 2 0.243587385410565 5 2 1872309 3 15 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGSF22 11 18704305 18726230 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 29 10 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGSF23 19 44613630 44636781 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGSF3 1 116574399 116667755 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGSF5 21 39745407 39802096 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGSF6 16 21639537 21652660 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGSF8 1 160091340 160098943 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 10 0 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGSF9 1 159927039 159945604 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 25 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IGSF9B 11 133908564 133956985 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 29 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IHH 2 219054420 219060467 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IK 5 140647058 140662479 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IKBIP 12 98613405 98645113 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 11 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IKBKB 8 42271302 42332653 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 30 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IKBKE 1 206470476 206496889 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 25 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IKBKG 23 154541199 154565046 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IKZF1 7 50304068 50405101 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 39 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IKZF2 2 212999691 213152427 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 11 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IKZF3 17 39757715 39864188 TRUE 550 0.588438690170753 105 39461721 39864123 0.397448435712946 6 NA 0.397448435712946 6 NA 402402 NA 11 36 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IKZF4 12 56007659 56038435 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IKZF5 10 122990806 123008817 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL10 1 206767602 206772494 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 8 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL10RA 11 117986348 118003037 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL10RB 21 33266358 33310187 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL11 19 55364389 55370463 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL11RA 9 34650702 34661892 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL12A 3 159988750 159996019 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL12B 5 159314783 159330887 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL12RB1 19 18058995 18098944 FALSE 633 -0.0653644831439953 67 17843737 18149705 0.31995059840763 3 NA 0.31995059840763 3 NA 305968 NA 8 20 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL12RB2 1 67307364 67397090 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL13 5 132656263 132661110 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL13RA1 23 118727572 118794539 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL13RA2 23 115003975 115019977 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL15 4 141636599 141733987 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL15RA 10 5943639 5978187 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL16 15 81159575 81314058 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL17A 6 52186375 52190638 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL17B 5 149371324 149404202 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL17C 16 88638591 88640473 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL17D 13 20702127 20723098 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL17F 6 52236681 52244537 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL17RA 22 17084954 17115694 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 18 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL17RB 3 53846580 53865800 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL17RC 3 9917074 9933630 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 19 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL17RD 3 57089982 57170306 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL17RE 3 9902612 9916402 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL17REL 22 49994513 50012659 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL18 11 112143251 112164117 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL18BP 11 71998541 72005715 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL18R1 2 102311529 102398775 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 23 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL18RAP 2 102418689 102452565 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL19 1 206798870 206842981 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL1A 2 112773915 112784590 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL1B 2 112829751 112836903 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL1F10 2 113067970 113075850 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL1R1 2 102064544 102179874 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL1R2 2 101991844 102028544 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL1RAP 3 190514051 190659750 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL1RAPL1 23 28587399 29956723 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 13 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL1RAPL2 23 104566315 105767829 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 19 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL1RL1 2 102311502 102352037 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 11 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL1RL2 2 102186973 102240002 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 14 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL1RN 2 113107214 113134016 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 7 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL2 4 122451470 122456725 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL20 1 206865354 206869223 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL20RA 6 136999971 137045180 FALSE 218 -0.114845236609927 67 135285636 137194883 0.31995059840763 3 NA 0.31995059840763 3 NA 1909247 NA 10 10 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL20RB 3 136946230 137011085 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL21 4 122610108 122621069 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL21R 16 27402162 27452042 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL22 12 68248242 68253604 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL22RA1 1 24119771 24143121 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL22RA2 6 137143820 137173648 FALSE 218 -0.114845236609927 67 135285636 137194883 0.31995059840763 3 NA 0.31995059840763 3 NA 1909247 NA 10 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL23A 12 56334174 56340410 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL23R 1 67138907 67259979 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL24 1 206897443 206904139 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL25 14 23372809 23376403 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL26 12 68201351 68225821 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL27 16 28499362 28512051 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL27RA 19 14031748 14053216 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL2RA 10 6010689 6062370 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL2RB 22 37125838 37175054 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL2RG 23 71107404 71112108 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 8 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL3 5 132060529 132063204 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL31 12 122172030 122174199 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL31RA 5 55851379 55922853 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 20 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL32 16 3065297 3082192 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 7 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL33 9 6215786 6257983 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL34 16 70579895 70660682 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL36A 2 113005461 113008044 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL36B 2 113022091 113052867 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL36G 2 112973203 112985665 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL36RN 2 113058638 113065382 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL37 2 112912971 112918882 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 6 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL4 5 132673986 132682676 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 5 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL4I1 19 49889654 49929539 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL4R 16 27313668 27364778 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 24 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL5 5 132541444 132556838 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL5RA 3 3066326 3126613 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 11 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL6 7 22725884 22732002 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 5 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL6R 1 154405193 154469450 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL6ST 5 55935095 55994993 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL7 8 78675743 78805523 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL7R 5 35852695 35879603 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 23 7 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IL9 5 135892246 135895827 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ILDR1 3 121987323 122022258 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ILDR2 1 166895711 166975482 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ILF2 1 153661788 153671048 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ILF3 19 10654261 10692417 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 22 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ILK 11 6603708 6610874 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ILKAP 2 238170401 238203729 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 12 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ILVBL 19 15114984 15125785 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 15 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IMMP1L 11 31432401 31509645 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IMMP2L 7 110663051 111562517 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IMMT 2 86143932 86195770 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IMP3 15 75639085 75648706 FALSE 492 -0.226543951235523 57 75468765 76202218 0.158317833115363 3 NA 0.158317833115363 3 NA 733453 NA 10 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IMP4 2 130342225 130347810 FALSE 82 -0.261392512927958 50 127719285 130373216 1 2 1 1 2 1 2653931 1 15 9 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IMPA1 8 81657961 81686693 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IMPA2 18 11981025 12030883 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IMPACT 18 24426616 24453535 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 11 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IMPAD1 8 56957933 56993844 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IMPDH1 7 128392277 128410252 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IMPDH2 3 49024325 49029408 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IMPG1 6 75921115 76072678 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IMPG2 3 101222546 101320560 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 26 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INA 10 103277163 103290351 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INAFM1 19 47274453 47275707 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 2 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INAFM2 15 40323664 40326715 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 2 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INAVA 1 200891048 200915735 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INCA1 17 4988130 4997610 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INCENP 11 62123973 62153163 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 22 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INF2 14 104689606 104722535 FALSE 470 -0.28238273283378 51 103746376 104759488 NA 2 NA NA 2 NA 1013112 NA 11 28 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ING1 13 110712736 110723339 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ING2 4 183504994 183511096 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ING3 7 120950749 120977216 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ING4 12 6650280 6663148 FALSE 381 -0.0962006740122522 67 6638345 6823870 0.31995059840763 3 NA 0.31995059840763 3 NA 185525 NA 10 7 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ING5 2 241687085 241729478 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 11 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INHA 2 219569162 219575713 TRUE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INHBA 7 41667168 41705834 TRUE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 32 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INHBB 2 120346143 120351808 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INHBC 12 57434760 57450828 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INHBE 12 57452323 57459280 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INIP 9 112683926 112718236 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INKA1 3 49803254 49805030 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INKA2 1 111680630 111739424 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INMT 7 30697985 30757602 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 6 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INMT-MINDY4 7 30752137 30892081 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 26 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INO80 15 40978880 41116354 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 42 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INO80B 2 74455023 74457960 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INO80B-WBP1 2 74455088 74460884 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INO80C 18 35452230 35497991 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INO80D 2 205993721 206086303 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INO80E 16 29995294 30005793 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INPP1 2 190343470 190371665 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 7 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INPP4A 2 98444854 98594390 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 55 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INPP4B 4 142023160 142847432 TRUE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 72 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INPP5A 10 132537820 132783480 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INPP5B 1 37860697 37947057 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INPP5D 2 233059967 233207903 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 28 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INPP5E 9 136428619 136439823 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 13 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INPP5F 10 119726042 119829278 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 25 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INPP5J 22 31122731 31134696 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INPP5K 17 1494571 1516888 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INPPL1 11 72223701 72239105 TRUE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INS 11 2159779 2161341 FALSE 341 0.150532842564489 86 2129151 2776033 0.360033220093454 4 NA 0.360033220093454 4 NA 646882 NA 11 3 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INS-IGF2 11 2132538 2161209 FALSE 341 0.150532842564489 86 2129151 2776033 0.360033220093454 4 NA 0.360033220093454 4 NA 646882 NA 11 21 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INSC 11 15112424 15247208 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INSIG1 7 155297776 155310235 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INSIG2 2 118088452 118110997 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INSL3 19 17816512 17821574 FALSE 632 0.669211234199231 108 17784949 17843451 0.397448435712946 7 NA 0.397448435712946 7 NA 58502 NA 4 3 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INSL4 9 5231419 5235304 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 3 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INSL5 1 66797741 66801256 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 2 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INSL6 9 5123880 5185668 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 18 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INSM1 20 20368121 20370949 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INSM2 14 35534042 35537054 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INSR 19 7112255 7294034 FALSE 607 0.372981718355934 101 7112582 7440096 0.397448435712946 5 NA 0.397448435712946 5 NA 327514 NA 4 46 7 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INSRR 1 156840063 156859018 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INSYN1 15 73735431 73752747 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INSYN2 10 127135426 127196158 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 7 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INSYN2B 5 169864264 169980740 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS1 7 1470277 1504367 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 51 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS10 8 19817140 19852083 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 18 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS11 1 1311585 1324691 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 19 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS12 4 105682627 105895986 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 24 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS13 12 26905181 26938326 FALSE 395 1.05231732428215 116 26055418 27646129 0.397448435712946 10 NA 0.397448435712946 10 NA 1590711 NA 13 17 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS14 15 65578753 65611289 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS2 17 61865367 61928016 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 28 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS3 1 153728067 153774808 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS4 11 77878720 77994678 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 25 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS5 11 62646848 62653302 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS6 13 51354077 51454264 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 23 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS6L 23 135520643 135582510 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 20 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS7 1 211940399 212035542 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS8 8 94813311 94881746 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 28 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTS9 8 28767661 28890242 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INTU 4 127623271 127726737 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 INVS 9 100099256 100301000 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 21 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IP6K1 3 49724294 49786542 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IP6K2 3 48688003 48740353 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IP6K3 6 33721670 33746905 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 7 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IPCEF1 6 154154496 154356792 FALSE 224 -0.117433393604286 66 152211521 156776133 0.330876988437597 3 0 0.330876988437597 3 0 4564612 3 15 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IPMK 10 58191517 58267934 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IPO11 5 62403972 62628582 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 37 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IPO13 1 43946939 43968022 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 21 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IPO4 14 24180219 24188964 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 27 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IPO5 13 97953658 98024297 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IPO7 11 9384622 9448126 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IPO8 12 30628988 30695986 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 27 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IPO9 1 201829141 201884294 FALSE 36 -0.0702600326825716 67 201211017 202010242 0.31995059840763 3 NA 0.31995059840763 3 NA 799225 NA 14 25 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IPP 1 45694324 45750650 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IPPK 9 92613184 92670265 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCA1 2 236324147 236507542 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCA1L 7 151190873 151205496 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 20 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCB1 3 121769763 121835079 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 13 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCC 1 32205661 32208687 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCD 12 113195441 113221094 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCE 7 2558972 2614734 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 23 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCF1 3 51894876 51903335 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCF2 3 51861629 51863424 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCF3 3 51826883 51830856 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCF5 3 51873721 51875584 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCF6 3 51778561 51779241 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 2 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCG 3 197889075 197960142 FALSE 140 0.171385044141441 90 197852595 198169826 0.275334878251284 5 NA 0.275334878251284 5 NA 317231 NA 4 14 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCH 15 67254800 67502260 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 28 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCJ 3 158962928 159266307 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCJ-SCHIP1 3 158962235 159897366 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCK 16 19716456 19858467 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCM 4 149351903 149896233 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQCN 19 18257097 18274509 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 18 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQGAP1 15 90388218 90502243 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 37 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQGAP2 5 76403249 76708132 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 44 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQGAP3 1 156525405 156572604 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 40 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQSEC1 3 12897220 13283281 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 23 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQSEC2 23 53225828 53321350 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 29 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQSEC3 12 66765 178460 FALSE 375 0.00440437382068143 77 66864 894588 0.252310779181821 4 NA 0.252310779181821 4 NA 827724 NA 8 22 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IQUB 7 123452400 123535077 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 14 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRAK1 23 154010500 154019980 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 15 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRAK1BP1 6 78867472 78946440 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRAK2 3 10164865 10243743 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 14 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRAK3 12 66188879 66254622 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRAK4 12 43758944 43789543 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IREB2 15 78437431 78501456 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRF1 5 132481609 132490798 TRUE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRF2 4 184387713 184474580 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 22 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRF2BP1 19 45883607 45886170 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRF2BP2 1 234604269 234609525 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRF2BPL 14 77024543 77028699 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 10 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRF3 19 49659569 49665875 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRF4 6 391739 411447 FALSE 184 0.625593972162631 107 292576 486727 0.397448435712946 7 NA 0.397448435712946 7 NA 194151 NA 3 26 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRF5 7 128937612 128950035 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRF6 1 209785623 209806175 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRF7 11 612553 615999 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRF8 16 85898803 85922609 TRUE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 21 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRF9 14 24161053 24166565 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRGC 19 43716010 43720021 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRGM 5 150846523 150900736 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRGQ 19 43584369 43596135 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRS1 2 226731317 226799759 FALSE 104 0.692756852106956 111 225513484 226799726 0.397448435712946 7 NA 0.397448435712946 7 NA 1286242 NA 2 37 6 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRS2 13 109752698 109786568 FALSE 442 1.04190250537948 115 109752780 110164876 0.397448435712946 10 NA 0.397448435712946 10 NA 412096 NA 2 29 3 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRS4 23 108732482 108736409 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 15 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRX1 5 3596054 3601403 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRX2 5 2745845 2751662 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRX3 16 54283304 54286763 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRX4 5 1877413 1887236 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRX5 16 54930862 54934485 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IRX6 16 55323760 55330760 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISCA1 9 86264546 86283102 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISCA2 14 74493720 74497106 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 4 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISCU 12 108562582 108569384 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISG15 1 1001138 1014540 FALSE 1 -0.106716554101356 67 69453 1051961 0.31995059840763 3 NA 0.31995059840763 3 NA 982508 NA 11 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISG20 15 88636153 88656483 FALSE 498 -0.51213719589399 35 88530880 88857136 0.252021069663427 1 0 0.252021069663427 1 0 326256 1 5 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISG20L2 1 156721891 156728799 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISL1 5 51383391 51394738 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISL2 15 76336724 76342476 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISLR 15 74173671 74176872 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISLR2 15 74100311 74138540 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISM1 20 13221771 13300651 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISM2 14 77474394 77498850 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 11 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISOC1 5 129094751 129114028 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 6 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISOC2 19 55452985 55462343 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISPD 7 16087527 16421322 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 12 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IST1 16 71845996 71931199 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 28 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISX 22 35066136 35087387 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISY1 3 129127415 129161293 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISY1-RAB43 3 129087575 129161036 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ISYNA1 19 18434388 18438301 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITCH 20 34363235 34511393 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITFG1 16 47154387 47464149 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITFG2 12 2812622 2859791 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGA1 5 52787896 52959210 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 36 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGA10 1 145891208 145910189 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 30 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGA11 15 68296533 68432162 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 32 5 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGA2 5 52989326 53094779 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 30 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGA2B 17 44372180 44389505 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 28 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGA3 17 50055968 50090481 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 27 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGA4 2 181457202 181536187 FALSE 94 0.355754312996103 101 179443289 181538825 0.397448435712946 5 NA 0.397448435712946 5 NA 2095536 NA 5 34 4 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGA5 12 54395261 54419460 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGA6 2 172427354 172506282 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 26 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGA7 12 55684568 55716043 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 32 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGA8 10 15513949 15720125 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 31 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGA9 3 37452115 37823514 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 29 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGAD 16 31393312 31426505 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 31 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGAE 17 3714628 3801243 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 41 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGAL 16 30472658 30523185 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 32 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGAM 16 31259967 31332892 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 30 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGAV 2 186590065 186680901 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 31 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGAX 16 31355134 31382997 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 29 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGB1 10 32900319 33005792 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGB1BP1 2 9403475 9423547 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 7 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGB1BP2 23 71301734 71305371 FALSE 715 -0.659931446909816 29 71291831 71671196 0.39968910724052 0 NA 0.39968910724052 0 0 379365 0 7 9 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGB2 21 44885953 44931989 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGB3 17 47253846 47311816 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 17 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGB3BP 1 63440770 63593721 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 25 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGB4 17 75721328 75757818 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 43 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGB5 3 124761948 124901418 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGB6 2 160099666 160200313 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGB7 12 53191318 53207307 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGB8 7 20330702 20415754 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 16 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITGBL1 13 101452593 101720856 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 47 5 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITIH1 3 52777592 52792068 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITIH2 10 7703269 7749520 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 22 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITIH3 3 52794768 52809009 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITIH4 3 52812975 52831479 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITIH5 10 7559270 7666998 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 20 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITIH6 23 54748899 54798240 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 23 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITK 5 157142933 157255191 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITLN1 1 160876539 160885170 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITLN2 1 160945025 160954799 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITM2A 23 79360384 79367667 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITM2B 13 48232612 48270357 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 6 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITM2C 2 230864639 230879248 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITPA 20 3208868 3223870 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITPK1 14 92936914 93116320 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITPKA 15 41493393 41503551 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITPKB 1 226631690 226739323 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITPKC 19 40717103 40740860 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITPR1 3 4493345 4847840 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 61 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITPR2 12 26336515 26833198 FALSE 395 1.05231732428215 116 26055418 27646129 0.397448435712946 10 NA 0.397448435712946 10 NA 1590711 NA 13 60 4 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITPR3 6 33620365 33696574 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 63 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITPRID1 7 31514071 31658720 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 24 3 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITPRID2 2 181891833 181930738 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITPRIP 10 104309698 104338448 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITPRIPL1 2 96325331 96330517 FALSE 73 0.130965048807663 86 96195440 96642849 0.360033220093454 4 NA 0.360033220093454 4 NA 447409 NA 10 8 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITPRIPL2 16 19113932 19121629 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITSN1 21 33642400 33899861 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 41 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ITSN2 2 24202864 24360714 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 40 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IVD 15 40405795 40435947 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 16 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IVL 1 152908545 152911886 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IVNS1ABP 1 185296388 185317329 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IWS1 2 127436207 127526886 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 18 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IYD 6 150368892 150405969 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 7 0 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IZUMO1 19 48740852 48746909 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IZUMO1R 11 94305592 94307721 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IZUMO2 19 50152548 50163195 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 7 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IZUMO3 9 24542952 24545946 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 IZUMO4 19 2096429 2099593 FALSE 591 -0.292096165521122 44 1753671 2129102 0.213873728132233 2 0 0.213873728132233 2 0 375431 2 13 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JADE1 4 128809623 128875224 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JADE2 5 134524312 134583230 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 17 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JADE3 23 46912276 47061242 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 14 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JAG1 20 10637684 10673999 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 29 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JAG2 14 105140981 105168824 FALSE 474 -0.136925231270881 62 104993000 105529597 0.235629703240478 3 NA 0.235629703240478 3 NA 536597 NA 15 28 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JAGN1 3 9890572 9894349 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JAK1 1 64833229 64966504 TRUE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 39 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JAK2 9 4984390 5128183 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 39 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JAK3 19 17824780 17848071 FALSE 632 0.669211234199231 108 17784949 17843451 0.397448435712946 7 NA 0.397448435712946 7 NA 58502 NA 4 31 3 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JAKMIP1 4 6026203 6200591 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 20 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JAKMIP2 5 147585439 147782848 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JAKMIP3 10 132104671 132184809 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 26 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JAM2 21 25639272 25717562 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JAM3 11 134068925 134152001 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JAML 11 118193740 118225094 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 12 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JARID2 6 15246296 15522040 TRUE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 24 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JAZF1 7 27830573 28180743 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 5 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JCAD 10 30012800 30115494 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JCHAIN 4 70655541 70681817 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JDP2 14 75427716 75474111 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 5 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JHY 11 122882528 122959798 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JKAMP 14 59484443 59505410 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 9 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JMJD1C 10 63167221 63521850 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 44 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JMJD4 1 227730425 227735411 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JMJD6 17 76712832 76726799 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JMJD7 15 41828085 41837581 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 9 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JMJD7-PLA2G4B 15 41828095 41848155 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 30 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JMJD8 16 681671 684528 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JMY 5 79236189 79327215 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JOSD1 22 38685543 38701556 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JOSD2 19 50505998 50511353 FALSE 670 -0.191579946531989 57 50417807 50629807 0.158317833115363 3 NA 0.158317833115363 3 NA 212000 NA 10 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JPH1 8 74234700 74321328 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JPH2 20 44111695 44187578 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JPH3 16 87601835 87698156 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JPH4 14 23568035 23578800 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JPT1 17 75135248 75168281 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JPT2 16 1678256 1702280 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JRK 8 142657460 142681968 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JRKL 11 96389989 96507574 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JSRP1 19 2252252 2269759 FALSE 593 -0.414090744354779 39 2233974 2403179 NA 2 NA NA 2 NA 169205 NA 11 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JTB 1 153974269 153977688 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JUN 1 58780788 58784327 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JUNB 19 12791496 12793315 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JUND 19 18279760 18281622 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 JUP 17 41754604 41786931 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 16 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KAAG1 6 24356903 24358284 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KALRN 3 124080023 124726325 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 70 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KANK1 9 470291 746106 FALSE 280 0.0485868805897004 82 214810 710818 0.298111653356898 4 NA 0.298111653356898 4 NA 496008 NA 3 23 2 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KANK2 19 11164267 11197791 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 17 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KANK3 19 8322584 8343262 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 15 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KANK4 1 62236979 62319414 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 18 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KANSL1 17 46029916 46225389 FALSE 562 -0.239849237512674 51 45395530 46066680 NA 2 NA NA 2 NA 671150 NA 8 21 3 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KANSL1L 2 210021423 210171383 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 19 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KANSL2 12 48653401 48682238 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KANSL3 2 96593170 96642787 FALSE 73 0.130965048807663 86 96195440 96642849 0.360033220093454 4 NA 0.360033220093454 4 NA 447409 NA 10 23 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KARS 16 75627474 75648643 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KAT14 20 18138118 18188387 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 15 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KAT2A 17 42113108 42121358 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 18 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KAT2B 3 20040023 20154404 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KAT5 11 65711996 65719604 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KAT6A 8 41929479 42052026 TRUE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 58 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KAT6B 10 74824927 75032624 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KAT7 17 49788555 49835030 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KAT8 16 31115754 31131393 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KATNA1 6 149594873 149648972 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KATNAL1 13 30202630 30307484 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KATNAL2 18 46917492 47102243 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 34 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KATNB1 16 57735730 57757250 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 19 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KATNBL1 15 34140674 34210096 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KAZALD1 10 101061841 101068131 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KAZN 1 13892792 15118043 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 19 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KBTBD11 8 1973878 2006936 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KBTBD11-OT1 8 1763888 1958627 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 37 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KBTBD12 3 127915232 127987671 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KBTBD13 15 65076816 65079939 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KBTBD2 7 32868172 32894131 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 9 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KBTBD3 11 106051098 106077765 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KBTBD4 11 47572197 47579015 FALSE 346 -0.207050878279221 57 47484529 47631121 0.158317833115363 3 NA 0.158317833115363 3 NA 146592 NA 7 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KBTBD6 13 41127569 41132746 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KBTBD7 13 41189833 41194566 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KBTBD8 3 66998307 67011210 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCMF1 2 84971093 85059472 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNA1 12 4909905 4918256 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNA10 1 110517217 110519175 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNA2 1 110519837 110631474 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNA3 1 110672465 110675033 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNA4 11 30009741 30017023 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNA5 12 5043989 5046788 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNA6 12 4809176 4813412 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNA7 19 49067418 49072941 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNAB1 3 156037701 156539138 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 18 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNAB2 1 5991466 6101193 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNAB3 17 7921859 7929803 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNB1 20 49293394 49484297 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNB2 8 72537391 72938349 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNC1 11 17734774 17856804 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNC2 12 75040077 75209868 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNC3 19 50311937 50333515 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNC4 1 110211343 110283100 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCND1 23 48961378 48971569 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 11 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCND2 7 120273668 120750331 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCND3 1 111770662 111989155 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNE1 21 34446688 34512275 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNE2 21 34364024 34371389 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNE3 11 74454841 74467729 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNE4 2 223051814 223198399 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNE5 23 109623700 109625172 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNF1 2 10911937 10914225 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 6 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNG1 20 51003656 51023129 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNG2 18 79863668 79900184 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNG3 2 42442017 42494097 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNG4 16 84218667 84239750 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 7 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNH1 1 210676823 211134180 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNH2 7 150944961 150978315 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 24 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNH3 12 49539157 49558308 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNH4 17 42156891 42181278 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 21 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNH5 14 62699454 63102037 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 16 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNH6 17 63523334 63548977 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNH7 2 162371407 162838730 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNH8 3 19148454 19535646 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 22 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNIP1 5 170353487 170736632 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNIP2 10 101825974 101843920 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNIP3 2 95297304 95386083 FALSE 72 -0.297431743288301 44 95106429 96195026 0.213873728132233 2 0 0.213873728132233 2 0 1088597 2 15 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNIP4 4 20728616 21948799 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ1 11 128836315 128867373 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ10 1 159998651 160070483 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ11 11 17385859 17389331 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ12 17 21376197 21419872 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 5 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ13 2 232766464 232776568 FALSE 106 0.545664806611778 105 232662878 232974659 0.397448435712946 6 NA 0.397448435712946 6 NA 311781 NA 5 6 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ14 19 48455509 48466980 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ15 21 38155549 38307357 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ16 17 70053429 70135608 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ18 17 21692523 21704612 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ2 17 70168673 70180048 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ3 2 154698299 154858352 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ4 22 38426327 38455199 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ5 11 128891356 128921035 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ6 21 37607376 38121345 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ8 12 21764955 21775581 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNJ9 1 160081570 160090563 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK1 1 233614004 233672512 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK10 14 88180103 88326907 FALSE 460 0.12444651269489 86 81145505 88469683 0.360033220093454 4 NA 0.360033220093454 4 NA 7324178 NA 10 12 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK12 2 47516581 47570939 FALSE 61 -0.812791414070772 25 47376988 47829819 0.39968910724052 1 0 0.39968910724052 1 0 452831 1 5 26 5 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK13 14 90061765 90185857 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK15 20 44745780 44752313 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK16 6 39314698 39322968 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK17 6 39299001 39314553 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK18 10 117197489 117210299 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK2 1 215005775 215237093 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK3 2 26692690 26733420 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK4 11 64291302 64300031 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK5 6 39188973 39229450 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK6 19 38319844 38332076 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK7 11 65592855 65595996 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNK9 8 139600838 139704109 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNMA1 10 76869601 77638369 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 38 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNMB1 5 170374671 170389677 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNMB2 3 178272932 178844429 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNMB3 3 179236691 179267002 FALSE 127 1.11400170010963 116 179027826 179240114 0.397448435712946 11 NA 0.397448435712946 11 NA 212288 NA 3 22 2 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNMB4 12 70366276 70434292 FALSE 415 0.0296903115421813 74 69585546 71157651 0.246063395031215 4 2 0.246063395031215 4 2 1572105 2 11 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNN1 19 17951293 18000080 FALSE 633 -0.0653644831439953 67 17843737 18149705 0.31995059840763 3 NA 0.31995059840763 3 NA 305968 NA 8 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNN2 5 114055545 114496500 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNN3 1 154697455 154870280 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNN4 19 43766533 43781261 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNQ1 11 2444684 2849110 FALSE 341 0.150532842564489 86 2129151 2776033 0.360033220093454 4 NA 0.360033220093454 4 NA 646882 NA 11 19 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNQ2 20 63400210 63472677 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNQ3 8 132120858 132481019 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNQ4 1 40783814 40840452 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNQ5 6 72621792 73198851 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNRG 13 50015254 50020922 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNS1 20 45092310 45101112 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNS2 8 98427022 98432848 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNS3 2 17877847 18361616 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNT1 9 135702185 135795508 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 36 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNT2 1 196225779 196609225 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 31 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNU1 8 36784324 36936128 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 29 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNV1 8 109963645 109975847 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCNV2 9 2717502 2730037 FALSE 281 -0.150462187040168 62 711236 2838509 0.235629703240478 3 NA 0.235629703240478 3 NA 2127273 NA 8 8 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCP 7 128862451 128910719 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 48 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD1 18 26454910 26657401 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD10 12 109448656 109477544 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 7 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD11 17 7351889 7354944 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD12 13 76880166 76886390 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD13 16 29905012 29927035 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD14 11 78015715 78046191 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD15 19 33795933 33815763 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD16 5 144170832 144485686 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD17 22 37051736 37063390 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD18 2 200488952 200519784 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD19 16 67289428 67326763 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 19 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD2 17 75032575 75065889 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD20 6 36442767 36491143 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 10 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD21 11 78171249 78188822 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD3 1 215567392 215621807 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD4 13 45192853 45194717 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD5 16 2682475 2709030 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD6 3 58492114 58502360 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD7 7 66628767 66649067 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD8 4 44173909 44448807 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KCTD9 8 25427847 25458476 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDELC1 13 102784281 102799007 FALSE 440 -0.576133065842435 32 102637150 102839818 0.364170154096734 1 0 0.364170154096734 1 0 202668 1 8 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDELC2 11 108472105 108498432 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDELR1 19 48382570 48391553 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDELR2 7 6445953 6484242 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDELR3 22 38468062 38483447 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDF1 1 26949562 26960406 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM1A 1 23019443 23083689 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 22 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM1B 6 18155329 18223853 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 16 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM2A 11 67119269 67258087 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM2B 12 121429097 121581015 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 30 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM3A 2 86440647 86492716 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 29 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM3B 5 138352596 138437028 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM4A 1 43650158 43705515 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 23 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM4B 19 4969113 5153595 FALSE 602 -0.510436259887525 35 4818366 5153517 0.252021069663427 1 0 0.252021069663427 1 0 335151 1 5 28 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM4C 9 6720863 7175648 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 25 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM4D 11 94973681 94999518 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM4E 11 95025258 95027596 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 7 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM5A 12 280129 389454 FALSE 375 0.00440437382068143 77 66864 894588 0.252310779181821 4 NA 0.252310779181821 4 NA 827724 NA 8 52 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM5B 1 202724495 202809470 FALSE 37 0.422972367154532 103 202010393 202741677 0.397448435712946 5 NA 0.397448435712946 5 NA 731284 NA 9 31 0 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM5C 23 53191321 53225422 TRUE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 41 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM6A 23 44873177 45112602 TRUE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 50 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM6B 17 7839904 7854796 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 27 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM7A 7 140084746 140177035 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 21 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDM8 16 27203495 27221768 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDR 4 55078259 55125595 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 38 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KDSR 18 63327726 63367510 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KEAP1 19 10486120 10503741 TRUE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 14 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KEL 7 142941114 142962681 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 21 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KERA 12 91050491 91057983 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KHDC1 6 73241314 73310365 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KHDC1L 6 73223544 73225770 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KHDC3L 6 73362677 73364171 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KHDC4 1 155913043 155934400 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KHDRBS1 1 32013829 32060850 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KHDRBS2 6 61679960 62286227 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KHDRBS3 8 135457457 135656722 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KHK 2 27086747 27100772 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KHNYN 14 24429286 24441834 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 17 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KHSRP 19 6413348 6424794 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 20 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0040 1 175156987 175192999 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0100 17 28614440 28645454 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 46 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0232 4 6781375 6884170 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 20 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0319 6 24544104 24646155 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 25 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0319L 1 35433490 35557950 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0355 19 34254537 34355586 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0391 14 35121846 35277614 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 11 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0408 6 127440343 127459391 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0513 16 85027751 85094230 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0556 16 27550133 27780369 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 35 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0586 14 58427385 58551289 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 35 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0753 17 6578148 6640927 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 22 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0825 5 94152966 94618597 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 25 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0895 7 36324221 36390125 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0895L 16 67175602 67184040 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA0930 22 45190338 45240769 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1024 15 79432516 79472290 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1024L 5 129748079 129766732 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1109 4 122152333 122362758 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 108 5 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1143 3 44737661 44761662 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1147 7 141656728 141702153 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 9 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1191 5 176346061 176361968 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1210 23 119078635 119150579 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 26 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1211 4 56049073 56328625 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 18 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1211L 2 98793846 98936259 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 14 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1217 10 23694746 24547848 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 35 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1257 3 128909866 129002690 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 26 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1324 1 109113679 109206781 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1324L 7 86876906 87059699 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1328 18 36829106 37232172 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 13 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1522 1 32741885 32774970 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1549 7 138831381 138981318 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 33 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1549L 11 33376466 33674102 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 32 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1551 12 31959370 31993107 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 22 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1586 6 57046532 57055239 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1614 1 180913154 180951614 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1671 22 24952730 25197448 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 23 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1755 20 38210488 38260772 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 22 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1841 2 61065871 61138034 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 21 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA1958 9 112486847 112669397 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA2012 2 202073289 202205203 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 24 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA2013 1 11919591 11926428 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIAA2026 9 5881596 6007901 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 34 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIDINS220 2 8721081 8837630 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 37 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF11 10 92593286 92655395 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF12 9 114086126 114099291 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF13A 6 17759183 17987623 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 45 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF13B 8 29067279 29263124 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 44 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF14 1 200551497 200620734 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 36 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF15 3 44761717 44873376 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 40 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF16B 20 16272104 16573434 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 34 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF17 1 20664014 20718017 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 22 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF18A 11 28020620 28108308 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF18B 17 44924709 44947711 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 18 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF19 17 74326210 74355820 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 23 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF1A 2 240713761 240821036 FALSE 109 -0.204551948627658 52 240042747 240874079 0.261858812358373 3 1 0.261858812358373 3 1 831332 2 13 53 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF1B 1 10210805 10381603 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 52 5 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF1BP 10 68988721 69043544 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF1C 17 4997948 5028401 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 25 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF20A 5 138178719 138187715 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF20B 10 89701610 89774939 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 39 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF21A 12 39293228 39443390 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 44 3 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF21B 1 200969390 201023700 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 40 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF22 16 29790719 29805385 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF23 15 69414246 69448427 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 25 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF24 9 34252381 34311371 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 22 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF25 6 167996241 168045089 FALSE 229 0.162833614043837 88 167136718 168061946 0.3914153250654 4 2 0.3914153250654 4 2 925228 2 9 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF26A 14 104138723 104180894 FALSE 470 -0.28238273283378 51 103746376 104759488 NA 2 NA NA 2 NA 1013112 NA 11 31 3 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF26B 1 245154985 245709431 FALSE 44 0.117466813329847 86 243659450 245702541 0.360033220093454 4 NA 0.360033220093454 4 NA 2043091 NA 11 31 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF27 9 83836698 83921465 FALSE 293 -0.328784635523128 44 81990823 84670815 0.213873728132233 2 0 0.213873728132233 2 0 2679992 2 12 24 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF2A 5 62306162 62537249 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 56 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF2B 17 53822901 53825213 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF2C 1 44739818 44767767 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 22 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF3A 5 132692628 132737638 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 20 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF3B 20 32277664 32335011 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 13 1 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF3C 2 25926596 25982749 FALSE 56 0.00177645496183448 77 25244133 26472685 0.252310779181821 4 NA 0.252310779181821 4 NA 1228552 NA 12 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF4A 23 70290090 70420832 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 30 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF4B 5 155013755 155018132 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF5A 12 57549998 57586632 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 29 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF5B 10 32009010 32056431 FALSE 319 0.658937471729808 108 32009218 32269099 0.397448435712946 7 NA 0.397448435712946 7 NA 259881 NA 2 57 9 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF5C 2 148875250 149026759 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 26 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF6 6 39329990 39725405 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 25 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF7 15 89608789 89655451 FALSE 499 -0.326925020976481 44 88857449 89702022 0.213873728132233 2 0 0.213873728132233 2 0 844573 2 13 38 8 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIF9 3 47228026 47283451 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 24 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIFAP3 1 169921326 170085208 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 21 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIFC1 6 33391536 33409924 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIFC2 8 144466043 144474202 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIFC3 16 57758217 57863053 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 27 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIN 10 7750962 7787981 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 13 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIR2DL1 19 54769811 54784322 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 10 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIR2DL3 19 54738515 54753052 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIR2DL4 19 54803535 54814517 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIR3DL1 19 54816468 54830778 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIR3DL2 19 54850443 54867207 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIR3DL3 19 54724479 54736536 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 10 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIRREL1 1 157993273 158100262 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIRREL2 19 35855861 35867109 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 16 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIRREL3 11 126423359 127003460 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 19 2 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KISS1 1 204190341 204196486 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KISS1R 19 917287 921015 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIT 4 54657918 54740715 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 47 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KITLG 12 88492793 88580851 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KIZ 20 21125983 21246622 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 16 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KL 13 33016433 33066145 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLB 4 39406853 39451536 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLC1 14 103561896 103714249 FALSE 467 -0.166720648541046 62 102922761 103677490 0.235629703240478 3 NA 0.235629703240478 3 NA 754729 NA 13 43 4 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLC2 11 66257294 66267860 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLC3 19 45333434 45351520 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 18 2 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLC4 6 43040777 43075099 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 50 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF1 19 12884422 12887199 FALSE 620 0.246971120530574 97 12876151 13116391 0.39968910724052 4 NA 0.39968910724052 4 NA 240240 NA 12 6 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF10 8 102648779 102655902 FALSE 272 0.543983612780906 105 102232195 102651485 0.397448435712946 6 NA 0.397448435712946 6 NA 419290 NA 4 8 0 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF11 2 10042849 10054836 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF12 13 73686089 73995056 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF13 15 31326855 31435665 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF14 7 130731235 130734176 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF15 3 126342635 126357442 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF16 19 1852399 1863568 FALSE 591 -0.292096165521122 44 1753671 2129102 0.213873728132233 2 0 0.213873728132233 2 0 375431 2 13 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF17 1 44118850 44135140 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF18 1 44137821 44141631 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 11 5 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF2 19 16324817 16327874 TRUE 628 1.43190951484671 122 16234465 16361891 0.397448435712946 14 NA 0.397448435712946 14 NA 127426 NA 3 9 2 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF3 4 38664196 38701042 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF4 9 107484852 107490482 TRUE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 17 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF5 13 73054976 73077542 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF6 10 3775996 3785281 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF7 2 207074137 207167267 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF8 23 56232421 56287889 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLF9 9 70384597 70414624 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHDC1 14 49693105 49753152 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 13 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHDC10 7 130070510 130135720 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHDC2 14 49767608 49786385 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 16 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHDC3 6 43014103 43021298 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHDC4 16 87696485 87765992 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHDC7A 1 18480982 18486126 FALSE 16 0.136831934058324 84 16759339 18631648 0.243587385410565 5 2 0.243587385410565 5 2 1872309 3 15 9 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHDC7B 22 50545891 50551023 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHDC8A 1 205336065 205357090 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 6 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHDC8B 3 49171611 49176486 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHDC9 1 161098361 161100346 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL1 13 69700594 70108493 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL10 17 41835685 41848384 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL11 17 41853545 41865431 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL12 1 202891100 202928636 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL13 23 117897813 118117340 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 16 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL14 18 32672671 32773062 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL15 23 23983720 24027186 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL17 1 960587 965715 FALSE 1 -0.106716554101356 67 69453 1051961 0.31995059840763 3 NA 0.31995059840763 3 NA 982508 NA 11 14 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL18 3 47282917 47346816 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL2 4 165207618 165323156 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL20 1 173714941 173786702 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL21 1 6590724 6614607 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL22 22 20441519 20495883 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL23 2 169694488 169776989 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 12 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL24 3 183635568 183684477 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL25 15 85759323 85795030 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL26 19 18636965 18671714 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL28 14 44924319 45042322 FALSE 451 -0.0664108785456086 67 44505506 45130739 0.31995059840763 3 NA 0.31995059840763 3 NA 625233 NA 6 29 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL29 2 23385217 23708611 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 16 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL3 5 137617500 137736090 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL30 2 238138722 238152947 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 11 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL31 6 53647901 53665708 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL32 6 96924620 97140754 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL33 14 20425852 20436158 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL34 23 21654690 21658330 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL35 11 75422394 75430629 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL36 16 84648525 84667686 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL38 8 123645527 123652950 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 9 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL4 23 87517749 87670050 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL40 3 42685519 42692544 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL41 2 169509702 169526262 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL42 12 27780020 27803040 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL5 4 39045039 39126857 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 14 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL6 3 183487531 183555689 FALSE 133 1.19216202818301 118 183487723 183555669 0.397448435712946 11 NA 0.397448435712946 11 NA 67946 NA 1 26 4 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL7 7 23105758 23177914 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 15 2 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL8 4 87160103 87240314 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLHL9 9 21329671 21335380 FALSE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK1 19 50819148 50823787 FALSE 671 0.319009489173821 99 50630099 50948696 0.361681390833996 5 NA 0.361681390833996 5 NA 318597 NA 14 7 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK10 19 51012739 51020175 FALSE 672 0.353803789056783 101 50949075 51024637 0.397448435712946 5 NA 0.397448435712946 5 NA 75562 NA 8 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK11 19 51022216 51028039 FALSE 672 0.353803789056783 101 50949075 51024637 0.397448435712946 5 NA 0.397448435712946 5 NA 75562 NA 8 8 1 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK12 19 51029092 51035230 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK13 19 51056206 51065114 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK14 19 51077495 51084245 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK15 19 50825289 50837213 FALSE 671 0.319009489173821 99 50630099 50948696 0.361681390833996 5 NA 0.361681390833996 5 NA 318597 NA 14 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK2 19 50861568 50880567 FALSE 671 0.319009489173821 99 50630099 50948696 0.361681390833996 5 NA 0.361681390833996 5 NA 318597 NA 14 7 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK3 19 50854915 50860764 FALSE 671 0.319009489173821 99 50630099 50948696 0.361681390833996 5 NA 0.361681390833996 5 NA 318597 NA 14 8 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK4 19 50906352 50910738 FALSE 671 0.319009489173821 99 50630099 50948696 0.361681390833996 5 NA 0.361681390833996 5 NA 318597 NA 14 5 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK5 19 50943303 50953093 FALSE 671 0.319009489173821 99 50630099 50948696 0.361681390833996 5 NA 0.361681390833996 5 NA 318597 NA 14 7 0 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK6 19 50958631 50969673 FALSE 672 0.353803789056783 101 50949075 51024637 0.397448435712946 5 NA 0.397448435712946 5 NA 75562 NA 8 6 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK7 19 50976482 50984099 FALSE 672 0.353803789056783 101 50949075 51024637 0.397448435712946 5 NA 0.397448435712946 5 NA 75562 NA 8 7 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK8 19 50996007 51002711 FALSE 672 0.353803789056783 101 50949075 51024637 0.397448435712946 5 NA 0.397448435712946 5 NA 75562 NA 8 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLK9 19 51003111 51009634 FALSE 672 0.353803789056783 101 50949075 51024637 0.397448435712946 5 NA 0.397448435712946 5 NA 75562 NA 8 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLKB1 4 186208979 186258471 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 17 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLLN 10 87859161 87863437 FALSE 329 -0.116680330790243 67 86927969 87862413 0.31995059840763 3 NA 0.31995059840763 3 NA 934444 NA 13 6 0 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLRB1 12 9594551 9607886 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLRC1 12 10442264 10454685 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLRC2 12 10426854 10442300 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLRC3 12 10412312 10420595 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLRC4 12 10407382 10409757 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLRC4-KLRK1 12 10372353 10410146 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 11 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLRD1 12 10226058 10329600 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLRF1 12 9827481 9845007 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLRF2 12 9881489 9895833 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLRG1 12 8950044 9010760 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLRG2 7 139452690 139483712 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 8 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KLRK1 12 10372353 10391874 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KMO 1 241532134 241595642 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KMT2A 11 118436464 118526832 TRUE 368 0.673077737664328 108 118436480 118526758 0.397448435712946 7 NA 0.397448435712946 7 NA 90278 NA 2 124 1 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KMT2B 19 35718019 35738878 TRUE 642 0.788064619191259 112 35717470 35738603 0.397448435712946 8 NA 0.397448435712946 8 NA 21133 NA 1 56 6 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KMT2C 7 152134922 152436005 TRUE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 137 10 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KMT2D 12 49018975 49059774 TRUE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 106 7 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KMT2E 7 105014179 105114361 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 38 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KMT5A 12 123383773 123409358 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KMT5B 11 68154863 68213828 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KMT5C 19 55339853 55348120 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KNCN 1 46545644 46551527 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KNDC1 10 133160447 133226412 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 40 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KNG1 3 186717276 186744410 FALSE 136 0.193577617007497 90 186677783 187370824 0.275334878251284 5 NA 0.275334878251284 5 NA 693041 NA 10 14 3 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KNL1 15 40594020 40664342 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 44 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KNOP1 16 19701934 19718235 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KNSTRN 15 40382721 40394246 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 10 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KNTC1 12 122527246 122626396 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 63 7 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KPNA1 3 122421949 122514945 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KPNA2 17 68035519 68046842 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KPNA3 13 49699307 49792921 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 16 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KPNA4 3 160494995 160565588 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 16 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KPNA5 6 116681187 116741866 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 14 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KPNA6 1 32108038 32176568 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KPNA7 7 99173574 99207506 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KPNB1 17 47649476 47685505 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 22 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KPRP 1 152759561 152762052 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KPTN 19 47475144 47484268 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 13 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRAS 12 25204789 25250936 FALSE 394 3.13953565208866 127 25200305 25648555 0.397448435712946 52 NA 0.397448435712946 52 NA 448250 NA 3 44 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRBA1 7 149714781 149734575 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 20 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRBA2 17 8356902 8376711 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRBOX1 3 42809483 42942792 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 24 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRBOX4 23 46446857 46497422 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRCC1 2 88027205 88055729 FALSE 70 -0.71547500568643 29 86815737 88028585 0.39968910724052 1 0 0.39968910724052 1 0 1212848 1 6 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KREMEN1 22 29073078 29168333 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 11 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KREMEN2 16 2963944 2968383 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRI1 19 10553078 10566037 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 18 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRIT1 7 92198969 92246166 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRR1 12 75490861 75511636 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT1 12 52674736 52680407 FALSE 408 0.483867645866869 104 52675230 53105164 0.397448435712946 6 NA 0.397448435712946 6 NA 429934 NA 14 12 3 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT10 17 40818117 40822595 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 11 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT12 17 40860943 40867224 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT13 17 41500981 41505705 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT14 17 41582279 41586921 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT15 17 41513743 41522529 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT16 17 41609778 41615899 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 10 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT17 17 41619441 41624842 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT18 12 52948871 52952901 FALSE 408 0.483867645866869 104 52675230 53105164 0.397448435712946 6 NA 0.397448435712946 6 NA 429934 NA 14 8 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT19 17 41523617 41528308 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT2 12 52644558 52652164 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT20 17 40875941 40885227 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT222 17 40654665 40665181 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT23 17 40922696 40937634 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 9 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT24 17 40697991 40703750 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 10 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT25 17 40748021 40755332 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT26 17 40766238 40772162 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT27 17 40776808 40782534 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 9 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT28 17 40792203 40799959 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 9 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT3 12 52789685 52796117 FALSE 408 0.483867645866869 104 52675230 53105164 0.397448435712946 6 NA 0.397448435712946 6 NA 429934 NA 14 12 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT31 17 41393724 41397592 FALSE 554 0.268149089375618 97 41276128 41489769 0.39968910724052 4 NA 0.39968910724052 4 NA 213641 NA 13 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT32 17 41459811 41467429 FALSE 554 0.268149089375618 97 41276128 41489769 0.39968910724052 4 NA 0.39968910724052 4 NA 213641 NA 13 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT33A 17 41346092 41350812 FALSE 554 0.268149089375618 97 41276128 41489769 0.39968910724052 4 NA 0.39968910724052 4 NA 213641 NA 13 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT33B 17 41363494 41369800 FALSE 554 0.268149089375618 97 41276128 41489769 0.39968910724052 4 NA 0.39968910724052 4 NA 213641 NA 13 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT34 17 41377650 41382403 FALSE 554 0.268149089375618 97 41276128 41489769 0.39968910724052 4 NA 0.39968910724052 4 NA 213641 NA 13 8 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT35 17 41476689 41481140 FALSE 554 0.268149089375618 97 41276128 41489769 0.39968910724052 4 NA 0.39968910724052 4 NA 213641 NA 13 8 4 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT36 17 41486136 41492546 FALSE 554 0.268149089375618 97 41276128 41489769 0.39968910724052 4 NA 0.39968910724052 4 NA 213641 NA 13 8 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT37 17 41420753 41424523 FALSE 554 0.268149089375618 97 41276128 41489769 0.39968910724052 4 NA 0.39968910724052 4 NA 213641 NA 13 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT38 17 41436446 41440921 FALSE 554 0.268149089375618 97 41276128 41489769 0.39968910724052 4 NA 0.39968910724052 4 NA 213641 NA 13 8 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT39 17 40958417 40966892 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 8 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT4 12 52806549 52814551 FALSE 408 0.483867645866869 104 52675230 53105164 0.397448435712946 6 NA 0.397448435712946 6 NA 429934 NA 14 10 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT40 17 40977716 40987135 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 9 7 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT5 12 52514575 52520687 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT6A 12 52487174 52493257 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 11 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT6B 12 52446651 52452126 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 12 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT6C 12 52468516 52473785 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 12 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT7 12 52232520 52252186 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT71 12 52543909 52553147 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT72 12 52585589 52601538 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 11 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT73 12 52607570 52618559 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT74 12 52565782 52573825 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 12 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT75 12 52424070 52434525 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT76 12 52768155 52777345 FALSE 408 0.483867645866869 104 52675230 53105164 0.397448435712946 6 NA 0.397448435712946 6 NA 429934 NA 14 12 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT77 12 52689626 52703463 FALSE 408 0.483867645866869 104 52675230 53105164 0.397448435712946 6 NA 0.397448435712946 6 NA 429934 NA 14 13 4 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT78 12 52837804 52849092 FALSE 408 0.483867645866869 104 52675230 53105164 0.397448435712946 6 NA 0.397448435712946 6 NA 429934 NA 14 12 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT79 12 52821410 52834295 FALSE 408 0.483867645866869 104 52675230 53105164 0.397448435712946 6 NA 0.397448435712946 6 NA 429934 NA 14 12 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT8 12 52897187 52949954 FALSE 408 0.483867645866869 104 52675230 53105164 0.397448435712946 6 NA 0.397448435712946 6 NA 429934 NA 14 13 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT80 12 52168996 52192000 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT81 12 52285913 52291534 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 10 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT82 12 52393931 52406355 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT83 12 52314301 52321398 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 11 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT84 12 52377812 52385652 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 13 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT85 12 52360006 52367481 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT86 12 52249300 52309163 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 18 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRT9 17 41565841 41572058 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP1-1 17 41040559 41041461 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP1-3 17 41033884 41034855 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 2 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP1-4 17 41029697 41030104 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 2 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP1-5 17 41026026 41027202 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP10-1 21 44538981 44540195 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP10-10 21 44637356 44638455 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP10-11 21 44646414 44647650 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP10-12 21 44697172 44698044 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP10-2 21 44550357 44551505 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP10-3 21 44557790 44558760 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP10-4 21 44573724 44638284 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 30 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP10-5 21 44579455 44580604 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP10-6 21 44591268 44592505 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP10-7 21 44600597 44602174 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP10-8 21 44612079 44612954 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP10-9 21 44627123 44628293 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP11-1 21 30880644 30881555 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP12-1 21 44681576 44682163 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP12-2 21 44666189 44666927 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP12-3 21 44657932 44658341 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP12-4 21 44654213 44654659 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP13-1 21 30396074 30396822 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP13-2 21 30371391 30372257 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP13-3 21 30425265 30425968 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP13-4 21 30430230 30431026 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP15-1 21 30440275 30440945 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP16-1 17 41307700 41309253 FALSE 554 0.268149089375618 97 41276128 41489769 0.39968910724052 4 NA 0.39968910724052 4 NA 213641 NA 13 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP17-1 17 41314917 41315695 FALSE 554 0.268149089375618 97 41276128 41489769 0.39968910724052 4 NA 0.39968910724052 4 NA 213641 NA 13 2 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP19-1 21 30479699 30480344 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP19-2 21 30487057 30487436 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP19-3 21 30491464 30491985 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP19-4 21 30496824 30497133 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP19-5 21 30501657 30502117 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP19-6 21 30541535 30541864 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP19-7 21 30560875 30561314 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP19-8 21 31038159 31038476 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP2-1 17 41046541 41047316 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 2 0 TRUE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP2-2 17 41054498 41055230 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 2 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP2-3 17 41059240 41060114 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP2-4 17 41065116 41065879 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP20-1 21 30616425 30616699 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP20-2 21 30635236 30635619 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP20-3 21 30642864 30643136 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP20-4 21 30620627 30620850 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP21-1 21 30754830 30755428 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP21-2 21 30746794 30747233 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP21-3 21 30718525 30718777 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP22-1 21 30601087 30601382 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP22-2 21 30590105 30590397 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP23-1 21 30348399 30348609 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP24-1 21 30281309 30282958 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP25-1 21 30289145 30289514 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP26-1 21 30319124 30320316 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP27-1 21 30337013 30337694 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP29-1 17 41301826 41302851 FALSE 554 0.268149089375618 97 41276128 41489769 0.39968910724052 4 NA 0.39968910724052 4 NA 213641 NA 13 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP3-1 17 41008521 41019324 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 2 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP3-2 17 40999193 40999894 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 2 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP3-3 17 40993430 40994133 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 2 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP4-1 17 41184102 41185342 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 2 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP4-11 17 41117181 41118360 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 3 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP4-12 17 41123091 41124167 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP4-2 17 41177446 41178208 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP4-3 17 41167231 41168194 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 3 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP4-4 17 41159651 41160731 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP4-5 17 41148924 41149802 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 3 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP4-6 17 41139433 41140487 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 3 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP4-7 17 41084150 41085141 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP4-8 17 41096981 41098141 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 3 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP4-9 17 41105332 41106488 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP5-1 11 1584342 1585283 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP5-10 11 71565563 71566738 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 3 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP5-11 11 71579714 71603353 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP5-2 11 1597177 1598294 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP5-3 11 1607565 1608463 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP5-4 11 1620958 1622138 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 3 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP5-5 11 1629775 1630707 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 3 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP5-6 11 1697195 1697755 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP5-7 11 71527267 71528674 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP5-8 11 71538025 71539207 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP5-9 11 71548418 71549553 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP6-1 21 30613431 30613930 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP6-2 21 30598590 30598902 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP6-3 21 30592440 30593075 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP7-1 21 30829039 30829759 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP8-1 21 30812697 30813252 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP9-1 17 41189887 41190639 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP9-2 17 41226648 41227652 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 3 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP9-3 17 41232463 41233454 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP9-4 17 41249687 41250653 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 2 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP9-6 17 41265339 41266641 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP9-7 17 41275659 41276697 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 2 0 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP9-8 17 41238045 41239004 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 2 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTAP9-9 17 41255384 41256364 FALSE 553 -0.163462263465057 62 41047238 41275963 0.235629703240478 3 NA 0.235629703240478 3 NA 228725 NA 24 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTCAP2 1 155169408 155173475 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTCAP3 2 27442366 27446481 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KRTDAP 19 35487324 35495558 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KSR1 17 27456470 27626438 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KSR2 12 117453012 117968983 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 23 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KTI12 1 52032103 52033816 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KTN1 14 55559072 55701526 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 45 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KXD1 19 18557762 18569387 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KY 3 134603138 134651636 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KYAT1 9 128832942 128882494 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KYAT3 1 88935773 88992953 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 18 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 KYNU 2 142877498 143055832 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 L1CAM 23 153861514 153886174 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 29 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 L1TD1 1 62194831 62212328 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 L2HGDH 14 50237563 50312548 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 10 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 L34079.1 19 43554692 43593036 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 12 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 L3HYPDH 14 59460363 59484430 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 13 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 L3MBTL1 20 43489442 43550950 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 L3MBTL2 22 41205205 41231271 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 L3MBTL3 6 130013699 130141451 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 L3MBTL4 18 5954706 6415237 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LACC1 13 43879284 43893932 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LACRT 12 54630811 54634895 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LACTB 15 63121800 63142061 FALSE 487 0.296385928010631 99 61991730 63677860 0.361681390833996 5 NA 0.361681390833996 5 NA 1686130 NA 13 10 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LACTB2 8 70635318 70669174 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LACTBL1 1 22953043 22965338 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAD1 1 201373244 201399915 FALSE 36 -0.0702600326825716 67 201211017 202010242 0.31995059840763 3 NA 0.31995059840763 3 NA 799225 NA 14 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAG3 12 6772512 6778455 FALSE 381 -0.0962006740122522 67 6638345 6823870 0.31995059840763 3 NA 0.31995059840763 3 NA 185525 NA 10 12 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAGE3 23 154477769 154479257 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAIR1 19 54351384 54370558 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 11 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAIR2 19 54497879 54510687 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 6 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LALBA 12 48567684 48570066 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMA1 18 6941744 7117814 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 66 10 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMA2 6 128883141 129516569 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 66 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMA3 18 23689443 23956222 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 80 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMA4 6 112108760 112254939 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 39 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMA5 20 62307955 62367312 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 87 18 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMB1 7 107923799 108003255 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 37 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMB2 3 49121114 49133118 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 34 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMB3 1 209614870 209652466 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 26 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMB4 7 108023548 108130356 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 37 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMC1 1 183023460 183145592 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 31 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMC2 1 183186238 183244900 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 27 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMC3 9 131009082 131094473 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 36 5 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMP1 13 113297241 113323672 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMP2 23 120427827 120469365 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMP3 3 183122213 183163839 FALSE 132 0.047780091570414 82 183015581 183427934 0.298111653356898 4 NA 0.298111653356898 4 NA 412353 NA 4 8 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMP5 20 9514358 9530524 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMTOR1 11 72085895 72103387 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMTOR2 1 156054752 156058510 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMTOR3 4 99878336 99894490 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMTOR4 7 100148907 100155944 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 7 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAMTOR5 1 110401249 110407942 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LANCL1 2 210431249 210477652 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LANCL2 7 55365448 55433742 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LANCL3 23 37571569 37684463 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAP3 4 17577192 17607972 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAPTM4A 2 20032650 20052028 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAPTM4B 8 97775057 97853013 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAPTM5 1 30732469 30757820 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LARGE1 22 33162226 33922841 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LARGE2 11 45921621 45929096 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LARP1 5 154712902 154817607 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LARP1B 4 128061268 128222931 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LARP4 12 50392383 50480004 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LARP4B 10 806914 931705 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LARP6 15 70829130 70854159 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LARP7 4 112636964 112657592 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 13 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LARS 5 146113038 146182660 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 31 12 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LARS2 3 45388506 45549421 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 22 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAS1L 23 65512582 65534775 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 18 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LASP1 17 38869859 38921770 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAT 16 28984826 28990783 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAT2 7 74199652 74229834 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LATS1 6 149658153 149718256 TRUE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 37 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LATS2 13 20973032 21061547 TRUE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAX1 1 203765176 203776233 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LAYN 11 111540280 111561745 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LBH 2 30231369 30323730 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LBHD1 11 62662817 62672255 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LBHD2 14 103084210 103090027 FALSE 467 -0.166720648541046 62 102922761 103677490 0.235629703240478 3 NA 0.235629703240478 3 NA 754729 NA 13 3 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LBP 20 38346356 38377023 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LBR 1 225401502 225428925 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LBX1 10 101226195 101229794 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LBX2 2 74497517 74503316 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 4 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCA5 6 79484991 79537458 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCA5L 21 39405844 39445805 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCAT 16 67939750 67944131 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE1A 1 152827473 152827894 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE1B 1 152811971 152813109 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE1C 1 152804835 152806628 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE1D 1 152796751 152798181 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE1E 1 152786214 152788426 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE1F 1 152776372 152776728 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE2A 1 152698364 152699442 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE2B 1 152686123 152687401 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE2C 1 152675295 152676574 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE2D 1 152663396 152664659 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE3A 1 152622834 152623103 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE3D 1 152579381 152580504 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE3E 1 152565654 152566772 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE4A 1 152708160 152709491 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE5A 1 152510844 152512177 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCE6A 1 152842868 152843983 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCK 1 32251239 32286165 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCLAT1 2 30447226 30644225 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 7 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCMT1 16 25111729 25178231 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCMT2 15 43323649 43330605 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCN1 9 135521438 135526532 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCN10 9 136738167 136743356 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCN12 9 136949551 136955497 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCN15 9 136759634 136766255 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCN2 9 128149071 128153455 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCN6 9 136744011 136748528 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCN8 9 136754386 136758543 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCN9 9 135663322 135666422 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCNL1 9 136981904 136986410 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCOR 10 96832282 96995959 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCORL 4 17841199 18021876 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCP1 13 46125920 46211871 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCP2 5 170246237 170298227 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 21 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCT 2 135787840 135837180 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 32 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LCTL 15 66547179 66565979 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDAH 2 20684014 20823130 FALSE 53 -0.728335592696396 27 20687014 21038086 0.255173832388045 0 0 0.255173832388045 0 0 351072 0 2 6 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDB1 10 102107560 102120453 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDB2 4 16501541 16898809 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDB3 10 86668449 86736068 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 18 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDHA 11 18394388 18408425 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDHAL6A 11 18455824 18479600 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDHAL6B 15 59206823 59208515 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDHB 12 21635342 21757857 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 7 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDHC 11 18412307 18452058 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDHD 16 75111860 75116771 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDLR 19 11089362 11133816 FALSE 615 0.780305232950539 112 10960884 11106721 0.397448435712946 8 NA 0.397448435712946 8 NA 145837 NA 2 20 2 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDLRAD1 1 54007299 54018186 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDLRAD2 1 21812265 21825221 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDLRAD3 11 35943981 36232136 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDLRAD4 18 13217498 13652755 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDLRAP1 1 25543580 25568886 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LDOC1 23 141175745 141177125 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEAP2 5 132872322 132875046 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LECT2 5 135922279 135955034 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 11 2 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEF1 4 108047545 108168956 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEFTY1 1 225886282 225911382 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEFTY2 1 225936598 225941489 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEKR1 3 156825481 157046129 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 15 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LELP1 1 153203443 153205120 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEMD1 1 205381378 205457091 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEMD2 6 33771202 33789136 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 11 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEMD3 12 65169571 65248327 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LENEP 1 154993586 154994315 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LENG1 19 54155161 54159882 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LENG8 19 54448887 54462037 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 19 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LENG9 19 54461796 54463711 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEO1 15 51938025 51971806 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEP 7 128241284 128257628 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEPR 1 65420652 65641559 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 30 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEPROT 1 65420587 65436007 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEPROTL1 8 30095398 30177208 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 15 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LETM1 4 1811479 1856247 FALSE 142 0.0353806292410739 77 1699590 2008986 0.252310779181821 4 NA 0.252310779181821 4 NA 309396 NA 7 16 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LETM2 8 38386207 38409527 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 12 1 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LETMD1 12 51047962 51060424 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEUTX 19 39776595 39786167 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LEXM 1 54806063 54842252 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LFNG 7 2512529 2529177 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS1 22 37675608 37679806 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS12 11 63506084 63516774 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS13 19 39602501 39607476 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS14 19 39704306 39709444 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS16 19 39655894 39660647 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS2 22 37570246 37582616 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS3 14 55124110 55145413 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 8 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS3BP 17 78971238 78980109 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS4 19 38801671 38813364 FALSE 646 -0.00229584309761491 77 38714572 38869416 0.252310779181821 4 NA 0.252310779181821 4 NA 154844 NA 9 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS7 19 38770971 38773492 FALSE 646 -0.00229584309761491 77 38714572 38869416 0.252310779181821 4 NA 0.252310779181821 4 NA 154844 NA 9 1 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS7B 19 38789211 38791749 FALSE 646 -0.00229584309761491 77 38714572 38869416 0.252310779181821 4 NA 0.252310779181821 4 NA 154844 NA 9 3 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS8 1 236518000 236552981 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS9 17 27629798 27649560 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS9B 17 20449395 20467539 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 9 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALS9C 17 18476737 18494945 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 11 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGALSL 2 64453969 64461381 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGI1 10 93757809 93806272 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGI2 4 24998847 25030879 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGI3 8 22146825 22157084 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGI4 19 35124513 35142451 FALSE 640 -0.147583171664558 62 34943608 35134626 0.235629703240478 3 NA 0.235629703240478 3 NA 191018 NA 8 16 0 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGMN 14 92703807 92748702 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGR4 11 27365961 27472775 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGR5 12 71439770 71586310 FALSE 416 0.947289266108773 114 71439905 71610713 0.397448435712946 9 NA 0.397448435712946 9 NA 170808 NA 3 29 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGR6 1 202193901 202319781 FALSE 37 0.422972367154532 103 202010393 202741677 0.397448435712946 5 NA 0.397448435712946 5 NA 731284 NA 9 27 6 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LGSN 6 63275951 63319977 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHB 19 49015980 49017091 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 3 2 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHCGR 2 48686775 48755730 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHFPL1 23 112630648 112680054 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHFPL2 5 78485215 78770021 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHFPL3 7 104328656 104907232 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHFPL4 3 9498361 9553802 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHFPL5 6 35805293 35833874 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHFPL6 13 39209116 39603528 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHPP 10 124461834 124617888 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHX1 17 36936785 36944612 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHX2 9 124001670 124033301 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHX3 9 136196250 136205128 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHX4 1 180230286 180278982 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHX5 12 113462034 113472280 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHX6 9 122202577 122229626 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHX8 1 75128434 75161533 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LHX9 1 197911902 197935478 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIAS 4 39458587 39485109 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIF 22 30240447 30246851 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIFR 5 38474963 38608354 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 23 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIG1 19 48115445 48170603 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 28 7 TRUE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIG3 17 34980494 35009743 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIG4 13 108207439 108218368 FALSE 441 -0.133025597356164 67 102840913 109206723 0.31995059840763 3 NA 0.31995059840763 3 NA 6365810 NA 12 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LILRA1 19 54593582 54602090 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 12 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LILRA2 19 54572920 54590287 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 12 6 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LILRA4 19 54333185 54339150 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LILRA5 19 54307070 54313139 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LILRA6 19 54236592 54242791 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 9 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LILRB1 19 54617158 54637528 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 16 6 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LILRB2 19 54273821 54281184 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 16 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LILRB3 19 54216278 54223506 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 16 8 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LILRB4 19 54643889 54670359 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LILRB5 19 54249431 54257301 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 16 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIM2 19 51379909 51387960 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIMA1 12 50175788 50283546 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIMCH1 4 41359607 41700044 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 39 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIMD1 3 45555394 45686338 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 13 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIMD2 17 63695902 63701172 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIME1 20 63736283 63739103 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIMK1 7 74082933 74122525 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIMK2 22 31212239 31280080 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIMS1 2 108534355 108687246 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIMS2 2 127638381 127681786 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 19 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIN28A 1 26410778 26429722 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIN28B 6 104936616 105083332 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIN37 19 35748361 35754519 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIN52 14 74084796 74201235 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 6 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIN54 4 82909973 83012926 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIN7A 12 80792520 80937925 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIN7B 19 49114324 49118460 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIN7C 11 27494576 27506773 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIN9 1 226231149 226309869 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LINC02210-CRHR1 17 45620344 45835826 FALSE 562 -0.239849237512674 51 45395530 46066680 NA 2 NA NA 2 NA 671150 NA 8 14 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LINGO1 15 77613027 77820900 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LINGO2 9 27948078 28670286 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LINGO3 19 2289784 2292024 FALSE 593 -0.414090744354779 39 2233974 2403179 NA 2 NA NA 2 NA 169205 NA 11 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LINGO4 1 151800264 151806154 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LINS1 15 100559369 100603230 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIPA 10 89213569 89414557 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 40 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIPC 15 58410569 58569843 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIPE 19 42401507 42427426 FALSE 655 -0.303862148002883 46 42297355 42428877 NA 2 NA NA 2 NA 131522 NA 7 18 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIPF 10 88664441 88678814 FALSE 331 0.160746647112512 87 88274961 89024998 0.206344716318008 6 3 0.206344716318008 6 3 750037 3 10 10 1 FALSE AMP (BALANCED) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIPG 18 49560699 49599182 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIPH 3 185506262 185552613 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIPI 21 14108813 14210891 FALSE 694 -2.18012361865479 4 10605580 14109044 0.397448435712946 0 0 0.397448435712946 0 0 3503464 0 4 11 1 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIPJ 10 88586753 88606976 FALSE 331 0.160746647112512 87 88274961 89024998 0.206344716318008 6 3 0.206344716318008 6 3 750037 3 10 10 0 FALSE AMP (BALANCED) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIPK 10 88724544 88752786 FALSE 331 0.160746647112512 87 88274961 89024998 0.206344716318008 6 3 0.206344716318008 6 3 750037 3 10 10 0 FALSE AMP (BALANCED) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIPM 10 88802730 88820546 FALSE 331 0.160746647112512 87 88274961 89024998 0.206344716318008 6 3 0.206344716318008 6 3 750037 3 10 9 3 FALSE AMP (BALANCED) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIPN 10 88761406 88778242 FALSE 331 0.160746647112512 87 88274961 89024998 0.206344716318008 6 3 0.206344716318008 6 3 750037 3 10 8 0 FALSE AMP (BALANCED) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIPT1 2 99154955 99163157 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIPT2 11 74491712 74493733 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LITAF 16 11547722 11636381 FALSE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 3 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIX1 5 97091867 97142872 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LIX1L 1 145933423 145958001 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LKAAEAR1 20 64083380 64084359 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LLCFC1 7 142939343 142940868 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LLGL1 17 18225587 18244875 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 25 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LLGL2 17 75525080 75575208 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 26 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LLPH 12 66116555 66130768 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMAN1 18 59327823 59359962 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 14 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMAN1L 15 74812716 74825758 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMAN2 5 177331562 177351852 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMAN2L 2 96705929 96740064 FALSE 74 -0.129279957310398 64 96646499 97245420 0.313405470508204 3 1 0.313405470508204 3 1 598921 2 10 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMBR1 7 156668946 156893230 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 21 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMBR1L 12 49096551 49110900 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMBRD1 6 69675793 69867236 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMBRD2 5 36098412 36151961 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMCD1 3 8501707 8574673 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMF1 16 853634 981318 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 14 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMF2 22 50502949 50507691 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMLN 3 197960200 198043720 FALSE 140 0.171385044141441 90 197852595 198169826 0.275334878251284 5 NA 0.275334878251284 5 NA 317231 NA 4 17 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMLN2 14 23099065 23104992 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 14 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMNA 1 156082573 156140089 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMNB1 5 126776623 126837020 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMNB2 19 2427638 2456996 FALSE 594 0.361599717529754 101 2405415 2717768 0.397448435712946 5 NA 0.397448435712946 5 NA 312353 NA 6 13 3 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMNTD1 12 25409307 25648579 FALSE 394 3.13953565208866 127 25200305 25648555 0.397448435712946 52 NA 0.397448435712946 52 NA 448250 NA 3 11 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMNTD2 11 554855 560779 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 16 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMO1 11 8224304 8268716 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 8 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMO2 11 33858576 33892289 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMO3 12 16548373 16610594 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMO4 1 87328468 87348923 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMO7 13 75620434 75859870 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 42 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMOD1 1 201896452 201946588 FALSE 36 -0.0702600326825716 67 201211017 202010242 0.31995059840763 3 NA 0.31995059840763 3 NA 799225 NA 14 8 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMOD2 7 123655807 123664290 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMOD3 3 69106872 69123032 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMTK2 7 98106885 98209633 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 25 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMTK3 19 48485271 48513935 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMX1A 1 165201867 165356715 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LMX1B 9 126614443 126701032 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LNP1 3 100401193 100456319 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 3 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LNPEP 5 96935394 97037515 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 21 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LNPK 2 175923892 176002839 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 14 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LNX1 4 53459301 53701405 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LNX2 13 27545911 27620404 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LONP1 19 5691834 5720572 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 22 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LONP2 16 48244296 48363122 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LONRF1 8 12721894 12756073 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LONRF2 2 100273291 100322733 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 14 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LONRF3 23 118974614 119018355 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 16 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LOR 1 153259700 153262122 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LOX 5 122063195 122078360 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LOXHD1 18 46476972 46657220 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 47 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LOXL1 15 73925989 73952137 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LOXL2 8 23297189 23425328 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LOXL3 2 74532414 74555690 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 22 0 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LOXL4 10 98247690 98268250 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 17 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPA 6 160531483 160664259 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 28 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPAR1 9 110873263 111038458 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPAR2 19 19623668 19628930 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPAR3 1 84811602 84893213 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPAR4 23 78747709 78757094 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPAR5 12 6618835 6636447 FALSE 380 0.803724470352739 112 6567915 6621208 0.397448435712946 8 NA 0.397448435712946 8 NA 53293 NA 4 5 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPAR6 13 48389567 48444704 FALSE 434 0.661158851956757 108 48261213 48511837 0.397448435712946 7 NA 0.397448435712946 7 NA 250624 NA 4 7 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPCAT1 5 1456480 1523977 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPCAT2 16 55508998 55586670 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPCAT3 12 6976186 7018510 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 12 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPCAT4 15 34358618 34367278 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 14 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPGAT1 1 211743457 211830772 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPIN1 2 11677595 11827409 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 27 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPIN2 18 2916994 3013315 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPIN3 20 41340920 41360582 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 21 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPL 8 19901717 19967259 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPO 17 58218548 58268518 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPP 3 188153284 188890671 FALSE 137 0.632133845014845 107 187371138 189902345 0.397448435712946 7 NA 0.397448435712946 7 NA 2531207 NA 7 11 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LPXN 11 58526871 58578220 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRAT 4 154626945 154753118 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRBA 4 150264531 151015727 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 67 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRCH1 13 46553168 46753040 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRCH2 23 115110616 115234072 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 34 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRCH3 3 197791226 197888436 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 20 3 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRCH4 7 100574011 100586153 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 20 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRCOL1 12 132603150 132610543 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRFN1 19 39306568 39315336 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRFN2 6 40391586 40587465 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRFN3 19 35935358 35945767 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRFN4 11 66856647 66860475 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRFN5 14 41607570 41904549 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 11 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRG1 19 4536409 4540474 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRGUK 7 134127299 134264591 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 22 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRIF1 1 110947185 110964079 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRIG1 3 66378797 66501263 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRIG2 1 113073209 113132260 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRIG3 12 58872149 58920522 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRIT1 10 84231593 84241461 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRIT2 10 84220495 84225589 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRIT3 4 109848202 109872315 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRMDA 10 75431453 76560167 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRMP 12 25004342 25108334 FALSE 393 2.14911654701118 126 23740959 25194896 0.397448435712946 25 NA 0.397448435712946 25 NA 1453937 NA 4 36 4 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRP1 12 57128493 57213351 FALSE 410 0.98695157340253 114 57078680 57129111 0.397448435712946 9 NA 0.397448435712946 9 NA 50431 NA 4 102 0 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRP10 14 22871613 22881580 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRP11 6 149818798 149864026 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRP12 8 104489231 104589024 FALSE 274 -0.276254726456932 51 103435783 105801444 NA 2 NA NA 2 NA 2365661 NA 7 15 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRP1B 2 140231423 142131701 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 114 8 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRP2 2 169127109 169362685 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 92 5 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRP2BP 4 185363879 185395899 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRP3 19 33177603 33208867 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRP4 11 46856868 46918642 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 42 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRP5 11 68312609 68449275 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 33 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRP5L 22 25351418 25405377 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRP6 12 12116025 12267012 FALSE 387 -0.113542447011735 67 12079487 12714097 0.31995059840763 3 NA 0.31995059840763 3 NA 634610 NA 7 28 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRP8 1 53242364 53328070 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 22 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRPAP1 4 3503597 3532559 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 8 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRPPRC 2 43886508 43996005 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 38 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRR1 14 49598697 49614672 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC1 6 53794497 53924121 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC10 12 69608564 69611162 FALSE 415 0.0296903115421813 74 69585546 71157651 0.246063395031215 4 2 0.246063395031215 4 2 1572105 2 11 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC10B 11 61508800 61511018 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC14 8 144517992 144525178 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 18 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC14B 5 191511 195353 FALSE 159 -0.112173854210592 67 92307 223843 0.31995059840763 3 NA 0.31995059840763 3 NA 131536 NA 4 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC15 3 194355247 194369743 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC17 7 102912991 102944949 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC18 10 48909483 48914232 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 4 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC19 9 26993136 27005693 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC2 3 46515423 46580099 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 14 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC20 10 70298970 70382650 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC23 12 6873569 6914243 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC24 8 144522377 144527032 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC25 19 18391144 18397617 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC26 9 137168758 137170051 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC27 10 132332154 132379918 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC28 15 99251362 99390729 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC29 16 67207139 67227048 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC3 21 44455486 44462196 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC30 18 7231125 7232047 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC31 3 169839179 169869930 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC32 11 76657524 76670747 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC34 3 169793428 169812986 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC36 16 67326798 67385203 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 17 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC37A 17 46292733 46337794 FALSE 563 -1.07261267965258 19 46067588 46694644 0.39968910724052 0 0 0.39968910724052 0 0 627056 0 6 10 2 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC37A2 17 46511511 46555650 FALSE 563 -1.07261267965258 19 46067588 46694644 0.39968910724052 0 0 0.39968910724052 0 0 627056 0 6 16 2 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC37A3 17 64854312 64919480 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 21 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC37B 17 32007872 32053504 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC38 1 13474977 13514048 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC39 1 100148449 100178273 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC3B 3 26622806 26717537 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC3C 17 39941474 39944747 FALSE 551 -0.178633749129299 62 39868328 40193677 0.235629703240478 3 NA 0.235629703240478 3 NA 325349 NA 13 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC4 7 128027071 128032107 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC40 1 70144805 70205620 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC41 1 46261196 46303608 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 33 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC42 1 53946077 53968168 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC43 12 122167738 122203471 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC45 17 82023302 82031151 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 19 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC46 17 47831627 47837713 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC47 1 3778558 3796504 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC49 15 70853239 71053657 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 23 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC4B 19 50516892 50568045 FALSE 670 -0.191579946531989 57 50417807 50629807 0.158317833115363 3 NA 0.158317833115363 3 NA 212000 NA 10 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC4C 11 40114203 41459773 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC52 1 165544007 165563961 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC53 1 74469878 74512614 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC55 11 57181747 57191717 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC56 11 537527 554916 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 12 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC57 15 42537820 42548802 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC58 3 120324509 120349339 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC59 17 50375059 50397553 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC6 8 132571953 132675617 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC61 7 150322639 150338150 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 7 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC63 13 46211943 46277366 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC66 4 51993702 52017620 FALSE 145 -0.255465332866297 51 48565705 52745352 NA 2 NA NA 2 NA 4179647 NA 10 12 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC69 8 91101832 91219236 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC7 1 69568398 70151945 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 39 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC70 5 62578735 62581448 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC71 1 156920650 156933094 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC72 7 16526880 16581568 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 9 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC73 6 43506969 43510686 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC74A 14 76826372 76870302 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 14 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC74B 22 21045960 21064168 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 9 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC75A 17 16441577 16492153 FALSE 544 -0.432476680468626 39 16223200 17212252 NA 2 NA NA 2 NA 989052 NA 14 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC75B 22 24585620 24593208 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC8A 9 128882112 128918039 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC8B 1 89524836 89597864 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC8C 1 89633072 89769903 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC8D 1 89821014 89936611 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC8E 19 7888505 7902021 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 10 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRC9 14 59919713 60063559 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 33 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRCC1 8 85107147 85146076 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRD1 7 92141643 92179531 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRFIP1 2 237627576 237813682 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 33 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRFIP2 3 37052656 37183689 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 28 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRIQ1 12 85036314 85264457 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 34 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRIQ3 1 74026015 74198187 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRIQ4 3 169821922 169837775 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRK1 15 100919215 101078254 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 42 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRK2 12 40196744 40369285 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 64 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRN1 3 3799437 3847703 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRN2 1 204617170 204685733 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRN3 7 111091006 111125454 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRN4 20 6040778 6054049 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRN4CL 11 62686402 62689899 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRTM1 2 80288351 80304749 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRTM2 5 138868923 138875368 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRTM3 10 66926006 67099830 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRRTM4 2 76747719 77593319 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRSAM1 9 127451486 127503501 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 24 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRTM1 3 54918237 54967088 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRTM2 12 1820267 1836752 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRTOMT 11 72080331 72110782 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LRWD1 7 102464929 102473168 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSAMP 3 115802363 117139389 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSG1 3 194640788 194672477 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSM1 8 38163321 38176730 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSM10 1 36391238 36397892 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSM11 5 157743695 157760709 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSM12 17 44034635 44067619 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSM14A 19 34172504 34229515 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSM14B 20 62122461 62135378 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSM2 6 31797396 31806984 FALSE 192 0.00493836391948355 77 31761776 31933922 0.252310779181821 4 NA 0.252310779181821 4 NA 172146 NA 16 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSM3 3 14178358 14201119 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSM4 19 18306230 18323274 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSM5 7 32485332 32495283 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 5 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSM6 4 146175685 146200000 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSM7 19 2321517 2328620 FALSE 593 -0.414090744354779 39 2233974 2403179 NA 2 NA NA 2 NA 169205 NA 11 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSM8 7 118184032 118192824 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSMEM1 7 112480853 112491062 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSMEM2 3 50279027 50288114 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSP1 11 1852970 1892267 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 13 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSR 19 35248330 35267964 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LSS 21 46188141 46228824 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 22 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LST1 6 31586124 31588909 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTA 6 31572054 31574324 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTA4H 12 96000828 96043520 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 20 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTB 6 31580525 31582522 TRUE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTB4R 14 24311450 24318036 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTB4R2 14 24305734 24312053 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTBP1 2 32946972 33399509 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 40 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTBP2 14 74498170 74612378 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 41 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTBP3 11 65538805 65558930 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 29 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTBP4 19 40592883 40629818 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 40 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTBR 12 6375045 6391571 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTC4S 5 179793980 179796647 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTF 3 46435645 46485234 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTK 15 41503638 41513887 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 20 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTN1 21 28928144 28992956 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 36 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTO1 11 69653076 69675416 FALSE 356 0.582187674739794 105 69641403 70149798 0.397448435712946 6 NA 0.397448435712946 6 NA 508395 NA 6 11 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LTV1 6 143843344 143863812 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LUC7L 16 188969 229463 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 10 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LUC7L2 7 139340359 139423457 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LUC7L3 17 50719544 50756213 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LUM 12 91102629 91111831 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LURAP1 1 46203334 46221261 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LURAP1L 9 12775021 12822131 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LUZP1 1 23084023 23177808 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LUZP2 11 24496970 25082631 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LUZP4 23 115289727 115307556 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LUZP6 7 135927274 135927450 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 1 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LVRN 5 115962454 116027619 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 22 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LXN 3 158645822 158672693 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 18 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY6D 8 142784880 142786592 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY6E 8 143017982 143023832 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY6G5B 6 31670167 31673776 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY6G5C 6 31676684 31684040 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 3 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY6G6C 6 31718648 31721845 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 3 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY6G6D 6 31715356 31717804 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 3 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY6G6E 6 31711771 31714065 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 3 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY6G6F 6 31706885 31710595 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY6G6F-LY6G6D 6 31706904 31717918 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 14 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY6H 8 143157914 143160711 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY6K 8 142700111 142705127 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY75 2 159803355 159904749 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 38 9 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY75-CD302 2 159771851 159904710 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 44 10 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY86 6 6588108 6654983 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY9 1 160796074 160828261 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 16 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LY96 8 73991352 74029087 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYAR 4 4267701 4290169 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYG1 2 99284238 99304742 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYG2 2 99242246 99255282 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYL1 19 13099033 13103161 FALSE 620 0.246971120530574 97 12876151 13116391 0.39968910724052 4 NA 0.39968910724052 4 NA 240240 NA 12 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYN 8 55879813 56014168 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 27 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYNX1 8 142771197 142777810 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYNX1-SLURP2 8 142764334 142778224 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYPD1 2 132644853 132671579 FALSE 84 -0.292186070013859 45 130656603 132790182 1 2 1 1 2 1 2133579 1 16 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYPD2 8 142750150 142752534 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYPD3 19 43460787 43465660 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYPD4 19 41837074 41844697 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 5 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYPD5 19 43795929 43827206 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 7 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYPD6 2 149329985 149474148 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYPD6B 2 149038107 149215262 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYPD8 1 248718649 248755739 FALSE 49 -0.100969785741045 67 248650725 248918255 0.31995059840763 3 NA 0.31995059840763 3 NA 267530 NA 7 1 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYPLA1 8 54046367 54102017 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYPLA2 1 23790970 23795539 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYPLAL1 1 219173844 219212865 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYRM1 16 20899868 20925006 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYRM2 6 89568144 89638753 FALSE 202 -0.0287117028264841 72 88941203 89712641 0.211382613745547 4 NA 0.211382613745547 4 NA 771438 NA 11 20 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYRM4 6 5102593 5260939 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYRM7 5 131170810 131205426 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYRM9 17 27878314 27894752 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYSMD1 1 151159748 151165948 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYSMD2 15 51723011 51751585 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYSMD3 5 90515611 90529584 FALSE 171 0.215918464504023 94 84137275 90525167 0.39968910724052 4 NA 0.39968910724052 4 NA 6387892 NA 10 5 1 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYSMD4 15 99715697 99733561 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYST 1 235661041 235883640 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 69 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYVE1 11 10556966 10611689 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 18 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYZ 12 69348341 69354234 FALSE 413 -0.0193215587818043 77 68856685 69390241 0.252310779181821 4 NA 0.252310779181821 4 NA 533556 NA 4 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYZL1 10 29289061 29318328 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYZL2 10 30611779 30629762 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYZL4 3 42397078 42410600 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LYZL6 17 35934518 35943699 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LZIC 1 9922113 9943407 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 8 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LZTFL1 3 45823316 45916042 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LZTR1 22 20982013 20999038 TRUE 697 0.537845744331176 105 20887766 20998561 0.397448435712946 6 NA 0.397448435712946 6 NA 110795 NA 4 35 3 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LZTS1 8 20246165 20303963 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LZTS2 10 100996618 101007836 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 LZTS3 20 3162617 3173592 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 9 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 M1AP 2 74557883 74648338 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 M6PR 12 8940363 8949955 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAATS1 3 119703022 119767102 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAB21L1 13 35474182 35477209 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAB21L2 4 150581922 150584693 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAB21L3 1 116111755 116135240 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAB21L4 2 240886048 240896889 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 9 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MACC1 7 20134655 20217404 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 13 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MACF1 1 39081316 39487177 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 127 9 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MACO1 1 25430858 25500209 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MACROD1 11 63998558 64166106 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MACROD2 20 13995369 16053197 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 27 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAD1L1 7 1815793 2233243 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 19 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAD2L1 4 120055608 120067074 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAD2L1BP 6 43629540 43640952 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAD2L2 1 11674480 11691650 TRUE 10 -0.472587818930969 39 11046896 11690703 NA 2 NA NA 2 NA 643807 NA 11 19 4 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MADCAM1 19 489176 505342 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MADD 11 47269161 47330031 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 40 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAEA 4 1289851 1340147 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAEL 1 166975582 167022214 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAF 16 79585843 79600714 TRUE 530 0.0863261484312413 82 76522085 80684905 0.298111653356898 4 NA 0.298111653356898 4 NA 4162820 NA 12 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAF1 8 144104499 144107611 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAFA 8 143419182 143430406 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAFB 20 40685848 40689240 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAFF 22 38200767 38216511 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAFG 17 81918270 81927714 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAFK 7 1530714 1543043 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAG 19 35292125 35313804 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 15 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEA1 23 153179285 153183880 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEA10 23 152133310 152138578 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEA11 23 149688228 149717266 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEA12 23 152733779 152737669 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEA3 23 152698752 152702347 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEA4 23 151912509 151925170 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEA6 23 152766136 152769747 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEA8 23 149881141 149885835 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEB1 23 30243730 30252038 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEB10 23 27807990 27823014 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEB16 23 35798342 35803735 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEB17 23 16167481 16171464 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEB18 23 26138343 26140735 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEB2 23 30215560 30220089 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEB3 23 30230436 30237492 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEB4 23 30242052 30244193 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEB5 23 26216169 26218270 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEB6 23 26192440 26195646 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEB6B 23 26160601 26161824 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEC1 23 141903894 141909388 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 15 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEC2 23 142202345 142205290 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEC3 23 141838316 141897832 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGED1 23 51803007 51902357 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 17 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGED2 23 54807599 54816012 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 15 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEE1 23 76427724 76431353 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEE2 23 75782988 75785236 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEF1 3 184710367 184712002 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEH1 23 55452105 55453566 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGEL2 15 23643549 23647867 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGI1 3 65353525 66038834 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGI2 7 78017057 79453574 FALSE 236 0.496193817902199 104 78017165 81770105 0.397448435712946 6 NA 0.397448435712946 6 NA 3752940 NA 6 44 2 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGI3 1 113390749 113685923 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 29 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGIX 23 49162564 49168483 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGOH 1 53226892 53238610 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGOHB 12 10604190 10613623 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAGT1 23 77826364 77895593 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAIP1 2 199955317 200008540 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAJIN 11 64937517 64972085 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAK 6 10762723 10838555 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 15 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAK16 8 33484750 33501260 FALSE 265 -1.01258309430305 21 32769486 33503438 0.383364652758899 0 0 0.383364652758899 0 0 733952 0 3 11 2 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAL 2 95025677 95053996 FALSE 71 0.0815929456248537 82 88067910 95104630 0.298111653356898 4 NA 0.298111653356898 4 NA 7036720 NA 11 4 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAL2 8 119165034 119245673 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MALL 2 110083870 110116566 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 2 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MALRD1 10 19048771 19790401 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 46 9 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MALSU1 7 23298739 23311729 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 5 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MALT1 18 58671386 58754477 FALSE 582 0.9108065083363 114 58671609 58754393 0.397448435712946 9 NA 0.397448435712946 9 NA 82784 NA 1 39 5 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAMDC2 9 70043581 70226970 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 18 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAMDC4 9 136850943 136860799 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 25 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAML1 5 179732850 179777286 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAML2 11 95976598 96343180 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAML3 4 139716753 140154184 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 17 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAMLD1 23 150361422 150514178 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAMSTR 19 48712742 48719721 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAN1A1 6 119177209 119349761 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 14 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAN1A2 1 117367449 117528872 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAN1B1 9 137086927 137109187 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAN1C1 1 25617468 25786207 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAN2A1 5 109689366 109869625 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 24 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAN2A2 15 90902218 90922584 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAN2B1 19 12646511 12666742 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 24 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAN2B2 4 6575175 6623362 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 21 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAN2C1 15 75355207 75368630 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 26 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MANBA 4 102630770 102760994 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MANBAL 20 37289638 37317260 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MANEA 6 95577543 95609457 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MANEAL 1 37793802 37801137 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MANF 3 51385047 51389397 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MANSC1 12 12326056 12350541 FALSE 387 -0.113542447011735 67 12079487 12714097 0.31995059840763 3 NA 0.31995059840763 3 NA 634610 NA 7 6 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MANSC4 12 27762738 27771276 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAOA 23 43654907 43746824 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 15 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAOB 23 43766611 43882447 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 15 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP10 1 232804892 232808407 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP1A 15 43510958 43531620 FALSE 482 0.64044234586315 108 43403258 43521497 0.397448435712946 7 NA 0.397448435712946 7 NA 118239 NA 3 33 2 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP1B 5 72107234 72209570 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 32 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP1LC3A 20 34546854 34560345 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP1LC3B 16 87383995 87404779 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP1LC3B2 12 116548105 116576448 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP1LC3C 1 241995490 241999073 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP1S 19 17719242 17734516 FALSE 631 -0.336770470038871 46 17611815 17784844 NA 2 NA NA 2 NA 173029 NA 3 17 3 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP2 2 209424058 209734118 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 29 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP2K1 15 66386817 66492312 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP2K2 19 4090321 4124129 FALSE 599 0.276554850290338 97 3959289 4175087 0.39968910724052 4 NA 0.39968910724052 4 NA 215798 NA 7 21 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP2K3 17 21284672 21315240 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 12 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP2K4 17 12020824 12143830 TRUE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 32 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP2K5 15 67542709 67807123 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 23 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP2K6 17 69414698 69553861 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP2K7 19 7903843 7914478 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 12 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K1 5 56815574 56896152 TRUE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 43 8 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K10 19 40191744 40215575 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 16 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K11 11 65597755 65615382 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K12 12 53479669 53500063 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K13 3 185282941 185489097 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 52 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K14 17 45263119 45317145 FALSE 561 0.72600143378234 111 45261979 45316940 0.397448435712946 7 NA 0.397448435712946 7 NA 54961 NA 2 28 3 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K15 23 19360056 19515261 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 30 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K19 2 134964491 135047468 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 24 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K2 2 127298730 127388465 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 17 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K20 2 173075435 173268010 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 23 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K21 1 233327768 233385148 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K3 17 63622415 63696303 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K4 6 160991727 161117385 FALSE 227 0.619362333398079 107 160991922 163578580 0.397448435712946 7 NA 0.397448435712946 7 NA 2586658 NA 5 37 3 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K5 6 136557047 136792518 FALSE 218 -0.114845236609927 67 135285636 137194883 0.31995059840763 3 NA 0.31995059840763 3 NA 1909247 NA 10 31 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K6 1 27355184 27366892 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K7 6 90513573 90587045 FALSE 203 -0.328974867549418 46 89713302 90586867 NA 2 NA NA 2 NA 873565 NA 5 17 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K7CL 21 29077471 29175889 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K8 10 30433937 30461833 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP3K9 14 70722526 70809534 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 22 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP4 3 47850690 48089272 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 25 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP4K1 19 38587641 38618882 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 29 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP4K2 11 64784914 64803241 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 27 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP4K3 2 39249266 39437312 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 35 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP4K4 2 101696850 101894689 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 33 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP4K5 14 50418501 50561126 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 33 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP6 11 75586918 75669120 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP6D1 3 183815876 183825594 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP7 6 136342281 136550819 FALSE 218 -0.114845236609927 67 135285636 137194883 0.31995059840763 3 NA 0.31995059840763 3 NA 1909247 NA 10 22 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP7D1 1 36155579 36180849 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP7D2 23 20006713 20116917 FALSE 706 0.169663593513349 90 19670859 20156144 0.275334878251284 2 NA 0.275334878251284 2 NA 485285 NA 5 18 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP7D3 23 136213220 136256482 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 21 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAP9 4 155342658 155376970 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 15 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK1 22 21754500 21867680 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 26 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK10 4 85990007 86594625 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK11 22 50263713 50270767 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK12 22 50245450 50261825 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 30 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK13 6 36127809 36144524 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 11 0 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK14 6 36027677 36111236 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 13 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK15 8 143716259 143722458 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK1IP1L 14 55051631 55070192 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 5 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK3 16 30114105 30123506 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK4 18 50560078 50731824 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK6 15 51952106 52067372 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK7 17 19377721 19383544 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK8 10 48306639 48439360 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK8IP1 11 45885651 45906465 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK8IP2 22 50600685 50613981 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK8IP3 16 1706183 1770317 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 34 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPK9 5 180233143 180292099 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPKAP1 9 125437393 125707234 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPKAPK2 1 206684944 206734283 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPKAPK3 3 50611520 50649297 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPKAPK5 12 111841978 111902238 FALSE 421 -0.0176554379426518 77 111455010 112163629 0.252310779181821 4 NA 0.252310779181821 4 NA 708619 NA 11 14 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPKBP1 15 41774434 41827855 FALSE 480 0.402302350751874 103 41567577 41775344 0.397448435712946 5 NA 0.397448435712946 5 NA 207767 NA 3 37 0 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPRE1 20 32819893 32850405 FALSE 689 0.316430543791893 99 32330098 32885548 0.361681390833996 5 NA 0.361681390833996 5 NA 555450 NA 9 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPRE2 18 34976928 35143470 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 9 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPRE3 2 26970612 27027196 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAPT 17 45894382 46028334 FALSE 562 -0.239849237512674 51 45395530 46066680 NA 2 NA NA 2 NA 671150 NA 8 20 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARC1 1 220786759 220819657 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARC2 1 220748225 220784815 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCH1 4 163524298 164384050 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCH10 17 62701314 62808344 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCH11 5 16067139 16180762 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCH2 19 8413270 8439017 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCH3 5 126867714 127030808 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCH4 2 216257865 216372027 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCH5 10 92291163 92353964 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCH6 5 10353703 10440388 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCH7 2 159712457 159771027 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 14 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCH8 10 45454585 45594906 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCH9 12 57755098 57760407 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCKS 6 113857362 113863471 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 5 0 TRUE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCKSL1 1 32333832 32336379 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCO 2 118942166 118994660 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 18 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARCOL 5 148221650 148243580 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARF1 16 15594386 15643166 FALSE 519 -0.0068915740419202 77 14482806 15617149 0.252310779181821 4 NA 0.252310779181821 4 NA 1134343 NA 15 31 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARK1 1 220528183 220664461 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARK2 11 63838928 63911019 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARK3 14 103385392 103503831 FALSE 467 -0.166720648541046 62 102922761 103677490 0.235629703240478 3 NA 0.235629703240478 3 NA 754729 NA 13 19 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARK4 19 45079288 45305283 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 67 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARS 12 57475445 57517569 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 40 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARS2 2 197705369 197708387 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARVELD1 10 97713173 97718152 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARVELD2 5 69415065 69444330 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MARVELD3 16 71626161 71642114 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 9 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAS1 6 159906690 159916530 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAS1L 6 29486697 29487956 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MASP1 3 187217285 187292022 FALSE 136 0.193577617007497 90 186677783 187370824 0.275334878251284 5 NA 0.275334878251284 5 NA 693041 NA 10 21 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MASP2 1 11026523 11047233 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 15 0 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAST1 19 12833951 12874951 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 35 4 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAST2 1 45786987 46036124 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 39 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAST3 19 18097793 18151692 FALSE 633 -0.0653644831439953 67 17843737 18149705 0.31995059840763 3 NA 0.31995059840763 3 NA 305968 NA 8 32 8 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAST4 5 66596361 67169595 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 52 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MASTL 10 27154824 27186924 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 18 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAT1A 10 80271820 80289684 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAT2A 2 85539165 85545280 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAT2B 5 163503114 163519336 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MATK 19 3777970 3802129 FALSE 598 -0.201030278929954 57 3651966 3942109 0.158317833115363 3 NA 0.158317833115363 3 NA 290143 NA 9 14 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MATN1 1 30711277 30723587 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MATN2 8 97868840 98036716 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 21 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MATN3 2 19992111 20012694 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MATN4 20 45293445 45308529 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MATR3 5 139273752 139331677 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAU2 19 19320681 19358755 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 20 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAVS 20 3846799 3876123 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAX 14 65006174 65102695 TRUE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 37 1 TRUE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MAZ 16 29806106 29811164 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MB 22 35606764 35637951 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MB21D2 3 192796815 192918161 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBD1 18 50266882 50281774 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBD2 18 54151601 54224788 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBD3 19 1573596 1592801 FALSE 589 -0.44786516347233 39 1398963 1609436 NA 2 NA NA 2 NA 210473 NA 14 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBD3L1 19 8832398 8843340 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 3 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBD3L2 19 7049321 7051735 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 2 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBD3L2B 19 7018969 7021450 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 1 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBD3L3 19 7056209 7058640 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 3 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBD3L4 19 7037748 7040179 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 1 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBD3L5 19 7030578 7033011 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 1 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBD4 3 129430944 129440179 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBD5 2 148021011 148516971 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 24 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBD6 12 57520710 57530148 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBIP 14 36298558 36320676 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 9 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBL2 10 52765380 52771700 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBLAC1 7 100126694 100128498 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBLAC2 5 90458203 90474768 FALSE 171 0.215918464504023 94 84137275 90525167 0.39968910724052 4 NA 0.39968910724052 4 NA 6387892 NA 10 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBNL1 3 152243828 152465780 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBNL2 13 97221434 97394120 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBNL3 23 132369317 132489968 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBOAT1 6 20102145 20212399 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBOAT2 2 8852690 9003813 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBOAT4 8 30131824 30144686 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBOAT7 19 54173412 54189882 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBP 18 76978827 77133683 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBTD1 17 51177425 51260163 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 15 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBTPS1 16 84053761 84116906 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 24 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MBTPS2 23 21839636 21885424 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 18 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MC1R 16 89912119 89920977 FALSE 535 0.126990432456591 86 89733549 90075852 0.360033220093454 4 NA 0.360033220093454 4 NA 342303 NA 12 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MC2R 18 13882044 13915707 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MC3R 20 56248732 56249815 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MC4R 18 60371062 60372775 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 4 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MC5R 18 13824149 13827323 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCAM 11 119308529 119321521 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 16 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCAT 22 43132206 43143394 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCC 5 113022099 113488830 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 28 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCCC1 3 183015218 183116075 FALSE 132 0.047780091570414 82 183015581 183427934 0.298111653356898 4 NA 0.298111653356898 4 NA 412353 NA 4 19 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCCC2 5 71587288 71658704 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCCD1 6 31528717 31530232 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 2 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCEE 2 71109684 71130239 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCEMP1 19 7676628 7679826 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCF2 23 139581770 139708227 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 30 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCF2L 13 112894378 113099739 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 36 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCF2L2 3 183178043 183428778 FALSE 132 0.047780091570414 82 183015581 183427934 0.298111653356898 4 NA 0.298111653356898 4 NA 412353 NA 4 35 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCFD2 2 46901870 46941855 FALSE 59 -0.32871660107588 46 46484402 47170815 NA 2 NA NA 2 NA 686413 NA 11 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCHR1 22 40678750 40682814 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCHR2 6 99919910 99994247 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCIDAS 5 55219614 55227315 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCL1 1 150574551 150579738 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCM10 10 13161554 13211104 FALSE 315 0.228244116357697 94 12828838 14820149 0.39968910724052 4 NA 0.39968910724052 4 NA 1991311 NA 13 20 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCM2 3 127598223 127622436 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCM3 6 52264009 52284881 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCM3AP 21 46235126 46286297 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 38 8 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCM4 8 47960185 47978160 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCM5 22 35400063 35425430 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCM6 2 135839626 135876426 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCM7 7 100092728 100101940 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 17 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCM8 20 5950652 5998977 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCM9 6 118813442 118935162 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 23 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCMBP 10 119829404 119892556 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 16 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCMDC2 8 66870749 66922048 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCOLN1 19 7522626 7534009 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCOLN2 1 84925583 84997113 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCOLN3 1 85018082 85048499 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCPH1 8 6406592 6648504 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 30 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCRIP1 17 81822361 81833302 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCRIP2 16 636817 648474 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCRS1 12 49556544 49568153 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCTP1 5 94703741 95284575 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 26 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCTP2 15 94231538 94483952 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 25 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCTS1 23 120594010 120621074 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCU 10 72692131 72887694 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCUB 4 109560205 109688726 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MCUR1 6 13786557 13814568 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 10 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MDC1 6 30699807 30717889 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 31 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MDFI 6 41636882 41654246 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MDFIC 7 114922154 115019202 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MDGA1 6 37630679 37699306 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MDGA2 14 46840092 47674954 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 21 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MDH1 2 63588609 63607197 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MDH1B 2 206737763 206765547 FALSE 99 0.0214721821478593 77 206588151 206755055 0.252310779181821 4 NA 0.252310779181821 4 NA 166904 NA 4 13 4 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MDH2 7 76048051 76067508 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MDK 11 46380756 46383837 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MDM1 12 68272443 68332381 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 21 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MDM2 12 68808176 68850686 FALSE 412 1.22230241004154 119 68808384 68845378 0.397448435712946 12 NA 0.397448435712946 12 NA 36994 NA 2 32 2 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MDM4 1 204516379 204558120 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 36 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MDN1 6 89642499 89819723 FALSE 202 -0.0287117028264841 72 88941203 89712641 0.211382613745547 4 NA 0.211382613745547 4 NA 771438 NA 11 110 11 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MDP1 14 24213937 24216070 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ME1 6 83210389 83431071 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ME2 18 50878734 50954257 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ME3 11 86441108 86672636 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEA1 6 43011143 43016868 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEAF6 1 37492575 37514774 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MECOM 3 169083499 169663618 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 25 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MECP2 23 154021573 154137103 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MECR 1 29192873 29230942 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED1 17 39404285 39451286 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 28 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED10 5 6371881 6378594 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED11 17 4731428 4733610 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED12 23 71118556 71142454 TRUE 714 -0.111342206574026 67 71118719 71290781 0.31995059840763 2 NA 0.31995059840763 2 NA 172062 NA 5 50 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED12L 3 151085697 151437072 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 71 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED13 17 61942605 62065282 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 39 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED13L 12 115953872 116277719 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 39 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED14 23 40648306 40735858 FALSE 709 -0.360421027642709 43 40084126 41229701 1 1 0 1 1 0 1145575 1 6 34 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED15 22 20495913 20587632 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 20 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED16 19 867630 893218 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 19 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED17 11 93784227 93814963 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED18 1 28329002 28335967 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED19 11 57703714 57712323 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED20 6 41905354 41921139 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED21 12 27022546 27066343 FALSE 395 1.05231732428215 116 26055418 27646129 0.397448435712946 10 NA 0.397448435712946 10 NA 1590711 NA 13 4 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED22 9 133338323 133348131 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED23 6 131573966 131628229 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 43 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED24 17 40019097 40061215 FALSE 551 -0.178633749129299 62 39868328 40193677 0.235629703240478 3 NA 0.235629703240478 3 NA 325349 NA 13 27 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED25 19 49818279 49840383 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED26 19 16574907 16629062 FALSE 629 -0.412926938873791 39 16377140 16841876 NA 2 NA NA 2 NA 464736 NA 12 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED27 9 131860107 132079908 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED28 4 17614631 17634105 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED29 19 39391303 39400637 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED30 8 117520713 117540262 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED31 17 6643315 6651634 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED4 13 48053323 48095131 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED6 14 70581257 70600690 FALSE 456 -0.528554564313879 34 70049041 70667652 0.312402751065481 1 0 0.312402751065481 1 0 618611 1 8 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED7 5 157137412 157159019 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED8 1 43383917 43389808 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MED9 17 17476986 17493226 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEDAG 13 30906191 30925572 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEF2A 15 99565417 99716466 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEF2B 19 19145568 19170289 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEF2C 5 88717117 88904257 FALSE 171 0.215918464504023 94 84137275 90525167 0.39968910724052 4 NA 0.39968910724052 4 NA 6387892 NA 10 12 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEF2D 1 156463727 156500828 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEFV 16 3242028 3256627 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 17 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEGF10 5 127290831 127465737 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 28 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEGF11 15 65895079 66253747 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 25 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEGF6 1 3489920 3611495 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 37 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEGF8 19 42325609 42378769 FALSE 655 -0.303862148002883 46 42297355 42428877 NA 2 NA NA 2 NA 131522 NA 7 60 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEGF9 9 120600813 120714470 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEI1 22 41699499 41799456 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEI4 6 77650274 77927028 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEIG1 10 14959439 14988050 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEIKIN 5 131806993 131945698 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEIOB 16 1833987 1884294 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEIOC 17 44656404 44690308 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 19 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEIS1 2 66433452 66573869 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEIS2 15 36889204 37101299 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEIS3 19 47403124 47419523 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 12 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MELK 9 36572862 36677683 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 18 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MELTF 3 196988621 197029816 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEMO1 2 31865060 32011230 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEN1 11 64803510 64811294 TRUE 353 0.824458268690437 113 64803682 64811101 0.397448435712946 8 NA 0.397448435712946 8 NA 7419 NA 1 21 3 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEOX1 17 43640388 43661954 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEOX2 7 15611212 15686812 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 5 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEP1A 6 46793390 46839782 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 16 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEP1B 18 32185069 32220404 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 17 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEPCE 7 100428790 100434126 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEPE 4 87821411 87846817 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MERTK 2 111898479 112029561 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MESD 15 80946289 80989878 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MESP1 15 89748661 89751310 FALSE 500 -0.691279523244779 29 89703105 89804613 0.39968910724052 1 0 0.39968910724052 1 0 101508 1 4 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MESP2 15 89760591 89778754 FALSE 500 -0.691279523244779 29 89703105 89804613 0.39968910724052 1 0 0.39968910724052 1 0 101508 1 4 6 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEST 7 130486171 130506465 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 12 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MET 7 116672390 116798386 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 75 8 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METAP1 4 98995620 99062813 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METAP1D 2 171999583 172082430 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 10 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METAP2 12 95473520 95515839 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METRN 16 715115 719655 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METRNL 17 83079691 83095119 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL1 12 57768471 57772793 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL11B 1 170146001 170167790 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL13 1 171781664 171814023 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL14 4 118685368 118715433 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 13 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL15 11 28108248 28527041 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL16 17 2405562 2511891 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL17 14 20989770 20997035 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL18 1 169792529 169794966 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL21A 2 207580631 207625928 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 8 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL21C 13 102685744 102694504 FALSE 440 -0.576133065842435 32 102637150 102839818 0.364170154096734 1 0 0.364170154096734 1 0 202668 1 8 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL22 16 8621683 8649654 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL23 17 76726830 76733936 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL24 6 110245928 110358272 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL25 12 82358497 82479236 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL26 16 634427 636366 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL27 7 73834590 73842535 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL2A 17 62423867 62450822 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL2B 7 128476729 128506602 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 10 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL3 14 21498133 21511375 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL4 18 2537525 2571509 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL5 2 169810081 169824931 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL6 3 15381275 15440566 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL7A 12 50923472 50932517 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL7B 12 55681546 55684611 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL8 2 171317405 171434802 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 METTL9 16 21597218 21657473 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEX3A 1 156072013 156081998 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEX3B 15 82041778 82046141 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEX3C 18 51174550 51218304 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MEX3D 19 1554669 1568058 FALSE 589 -0.44786516347233 39 1398963 1609436 NA 2 NA NA 2 NA 210473 NA 14 9 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFAP1 15 43804492 43824802 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFAP2 1 16974502 16980835 FALSE 16 0.136831934058324 84 16759339 18631648 0.243587385410565 5 2 0.243587385410565 5 2 1872309 3 15 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFAP3 5 154038906 154220478 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFAP3L 4 169986597 170033031 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFAP4 17 19383442 19387240 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFAP5 12 8637346 8662888 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFF 2 227325151 227357836 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFGE8 15 88898683 88913411 FALSE 499 -0.326925020976481 44 88857449 89702022 0.213873728132233 2 0 0.213873728132233 2 0 844573 2 13 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFHAS1 8 8783354 8893645 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFN1 3 179347692 179394931 FALSE 128 0.146934569885818 86 179242975 181712000 0.360033220093454 4 NA 0.360033220093454 4 NA 2469025 NA 14 17 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFN2 1 11980181 12013514 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFNG 22 37469063 37486401 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFRP 11 119338942 119346673 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 18 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD1 3 158732198 158829719 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 19 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD10 4 2930561 2934859 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD11 17 76735865 76781449 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 19 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD12 19 3538261 3574290 FALSE 597 -0.316308503877712 46 3155904 3648696 NA 2 NA NA 2 NA 492792 NA 16 20 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD13A 10 102461395 102477045 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD14A 1 100038097 100083377 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD14B 9 94374551 94461042 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD14C 9 96887373 97013708 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD2A 1 39955112 39969968 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD2B 2 24010081 24063321 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 27 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD3 8 144509074 144511213 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD4A 1 205568885 205602918 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD4B 6 111259348 111271167 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 9 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD5 12 53251251 53254405 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD6 2 190408355 190509205 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 12 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD6L 17 8797162 8799349 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD8 4 127917732 127966034 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MFSD9 2 102715840 102736888 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGA 15 41621224 41773081 TRUE 480 0.402302350751874 103 41567577 41775344 0.397448435712946 5 NA 0.397448435712946 5 NA 207767 NA 3 79 6 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGAM 7 141907813 142106747 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 61 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGAM2 7 142111749 142222324 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 55 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGARP 4 139266163 139280338 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGAT1 5 180784782 180815652 FALSE 182 0.260639720850134 97 180601699 180792915 0.39968910724052 4 NA 0.39968910724052 4 NA 191216 NA 3 6 1 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGAT2 14 49620795 49623481 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGAT3 22 39457344 39492194 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGAT4A 2 98619106 98731126 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 17 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGAT4B 5 179797597 179806952 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGAT4C 12 85955666 86838904 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGAT4D 4 140442262 140498377 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGAT5 2 134119983 134454621 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGAT5B 17 76868456 76950393 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 20 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGLL 3 127689062 128052190 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGME1 20 17968913 17991122 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGMT 10 129467184 129768007 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGP 12 14881181 14885926 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGRN1 16 4616493 4690974 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGST1 12 16347142 16609259 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGST2 4 139665768 139740745 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MGST3 1 165630861 165661796 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIA 19 40771648 40777490 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIA-RAB4B 19 40771648 40796943 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIA2 14 39230231 39388513 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 39 7 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIA3 1 222618086 222668012 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 40 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIB1 18 21704957 21870957 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 22 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIB2 1 1615415 1630610 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 23 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MICA 6 31399784 31415315 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 7 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MICAL1 6 109444062 109465968 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 30 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MICAL2 11 12094008 12359144 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 41 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MICAL3 22 17787649 18024559 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 45 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MICALL1 22 37905657 37942822 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MICALL2 7 1428465 1459502 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MICB 6 31494881 31511124 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 9 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MICU1 10 72367327 72626191 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MICU2 13 21492691 21604214 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MICU3 8 17027238 17122644 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 16 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MID1 23 10445310 10833654 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 15 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MID1IP1 23 38801432 38806537 FALSE 708 0.383222066698039 101 38804946 40077899 0.397448435712946 2 NA 0.397448435712946 2 NA 1272953 NA 2 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MID2 23 107825755 107927193 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIDN 19 1248553 1259140 FALSE 587 0.217691882461168 93 1042394 1299919 0.39968910724052 4 1 0.39968910724052 4 1 257525 3 12 11 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIEF1 22 39499432 39518132 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIEF2 17 18260534 18266552 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIEN1 17 39728496 39730787 FALSE 550 0.588438690170753 105 39461721 39864123 0.397448435712946 6 NA 0.397448435712946 6 NA 402402 NA 11 4 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIER1 1 66924895 66988619 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIER2 19 301444 344815 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 14 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIER3 5 56919602 56971675 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 14 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIF 22 23894004 23895227 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIF4GD 17 75266228 75271227 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIGA1 1 77779624 77879539 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIGA2 9 129036621 129072082 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIIP 1 12019466 12032045 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MILR1 17 64449037 64468643 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MINDY1 1 150996086 151008375 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MINDY2 15 58771192 58861900 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MINDY3 10 15778170 15860520 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MINDY4 7 30771417 30892387 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 21 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MINDY4B 3 150871045 150905439 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MINK1 17 4833388 4898061 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 34 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MINOS1 1 19484403 19629821 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MINOS1-NBL1 1 19597067 19656927 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MINPP1 10 87504875 87553460 FALSE 329 -0.116680330790243 67 86927969 87862413 0.31995059840763 3 NA 0.31995059840763 3 NA 934444 NA 13 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIOS 7 7566872 7608929 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIOX 22 50486784 50490648 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIP 12 56449502 56469166 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIPEP 13 23730189 23889419 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIPOL1 14 37197913 37552361 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 13 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIS12 17 5486285 5490814 FALSE 538 -0.524547519785345 34 5395000 5521780 0.312402751065481 1 0 0.312402751065481 1 0 126780 1 7 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIS18A 21 32268219 32279069 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIS18BP1 14 45203190 45253540 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 23 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MISP 19 751126 764318 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MISP3 19 14072536 14075062 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 5 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MITD1 2 99161427 99181058 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MITF 3 69739435 69968337 TRUE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 41 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MIXL1 1 226223618 226227054 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MKI67 10 128096659 128126385 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 47 14 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MKKS 20 10401009 10434222 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MKLN1 7 131110096 131496636 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 51 7 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MKNK1 1 46557408 46616843 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 18 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MKNK2 19 2037465 2051244 FALSE 591 -0.292096165521122 44 1753671 2129102 0.213873728132233 2 0 0.213873728132233 2 0 375431 2 13 15 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MKRN1 7 140453040 140479569 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MKRN2 3 12557014 12583713 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MKRN2OS 3 12514934 12561059 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MKRN3 15 23565674 23630075 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MKS1 17 58205437 58219605 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 19 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MKX 10 27672875 27746060 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLANA 9 5890802 5910606 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLC1 22 50059391 50085902 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLEC 12 120686869 120701864 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLF1 3 158571163 158607252 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLF2 12 6747996 6767475 FALSE 381 -0.0962006740122522 67 6638345 6823870 0.31995059840763 3 NA 0.31995059840763 3 NA 185525 NA 10 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLH1 3 36993332 37050918 TRUE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 42 2 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLH3 14 75013764 75051532 FALSE 458 1.10196395589829 116 75013942 75051520 0.397448435712946 10 NA 0.397448435712946 10 NA 37578 NA 1 39 5 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLIP 6 53929982 54266280 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLKL 16 74671855 74700960 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLLT1 19 6210379 6279948 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLLT10 10 21524675 21743630 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLLT11 1 151057758 151068497 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLLT3 9 20341665 20622543 FALSE 284 0.644211299957687 108 20341784 20715367 0.397448435712946 7 NA 0.397448435712946 7 NA 373583 NA 2 34 1 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLLT6 17 38705542 38729803 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLN 6 33794673 33804011 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLNR 13 49220338 49222377 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLPH 2 237485428 237555318 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 16 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLST8 16 2204248 2209416 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLX 17 42567068 42573239 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLXIP 12 122078722 122147347 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLXIPL 7 73593194 73624543 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MLYCD 16 83899126 83927026 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMAA 4 145599042 145660035 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMAB 12 109553737 109573874 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMACHC 1 45500053 45513382 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMADHC 2 149569634 149587816 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMD 17 55392613 55421992 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMD2 7 4905989 4959213 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MME 3 155024124 155183729 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 22 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMEL1 1 2590639 2632990 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 23 7 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMGT1 23 135962070 135974063 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP1 11 102789920 102798160 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP10 11 102770503 102780628 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP11 22 23768226 23784316 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP12 11 102862736 102875034 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP13 11 102942995 102955734 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP14 14 22836557 22849027 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP15 16 58025566 58046901 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP16 8 88032009 88328025 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP17 12 131828393 131851783 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP19 12 55835433 55842966 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP2 16 55389700 55506691 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP20 11 102576835 102625332 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP21 10 125766453 125775821 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP23B 1 1632095 1635263 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP24 20 35226654 35277000 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP24OS 20 35201745 35278131 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP25 16 3046681 3060726 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 12 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP26 11 4704927 4992429 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 53 13 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP27 11 102691487 102705806 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP28 17 35756249 35795707 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP3 11 102835801 102843803 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 10 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP7 11 102520508 102530753 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP8 11 102711795 102727050 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMP9 20 46008908 46016561 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMRN1 4 89879532 89954629 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 18 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMRN2 10 86935540 86969481 FALSE 329 -0.116680330790243 67 86927969 87862413 0.31995059840763 3 NA 0.31995059840763 3 NA 934444 NA 13 23 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMS19 10 97458324 97498794 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 32 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MMS22L 6 97142161 97283217 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 26 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MN1 22 27748277 27801498 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MNAT1 14 60734742 60969953 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 8 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MND1 4 153344649 153415118 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MNDA 1 158831317 158849506 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MNS1 15 56421544 56465137 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MNT 17 2384060 2401118 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MNX1 7 156994051 157010651 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOAP1 14 93182196 93184928 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOB1A 2 74152528 74178898 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOB1B 4 70902326 71022449 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOB2 11 1469457 1501247 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOB3A 19 2071038 2096673 FALSE 591 -0.292096165521122 44 1753671 2129102 0.213873728132233 2 0 0.213873728132233 2 0 375431 2 13 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOB3B 9 27325209 27529781 TRUE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOB3C 1 46607715 46616891 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOB4 2 197515571 197553699 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOBP 3 39467198 39529479 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOCOS 18 36187519 36272157 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 18 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOCS1 6 39899578 39934551 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOCS2 5 53095679 53110063 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOCS3 20 50958826 50963931 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOG 6 29656981 29672372 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOGAT1 2 222671786 222709930 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOGAT2 11 75717819 75732958 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOGAT3 7 101195007 101201038 FALSE 243 -0.216974721306157 57 101087510 101616208 0.158317833115363 3 NA 0.158317833115363 3 NA 528698 NA 13 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOGS 2 74461057 74465410 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOK 14 102224500 102305200 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MON1A 3 49907160 49930173 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MON1B 16 77190835 77202405 FALSE 530 0.0863261484312413 82 76522085 80684905 0.298111653356898 4 NA 0.298111653356898 4 NA 4162820 NA 12 11 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MON2 12 62466817 62600479 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 39 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MORC1 3 108958239 109118142 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 28 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MORC2 22 30925130 30968298 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MORC3 21 36320189 36386148 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MORC4 23 106813871 107000244 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 54 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MORF4L1 15 78810487 78898133 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MORF4L2 23 103675496 103688158 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MORN1 1 2321253 2391707 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MORN2 2 38875962 38929072 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MORN3 12 121648742 121672631 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MORN4 10 97614553 97633500 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MORN5 9 122159908 122200088 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOS 8 56112942 56113982 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOSMO 16 22007638 22087534 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOSPD1 23 134887626 134915267 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOSPD2 23 14873441 14922327 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 16 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOSPD3 7 100612102 100615384 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOV10 1 112673141 112700746 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 21 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOV10L1 22 50089879 50161690 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 30 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MOXD1 6 132296055 132401545 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPC1 6 166364919 166383013 FALSE 228 -0.0936034159017556 66 165280135 167136462 0.330876988437597 3 0 0.330876988437597 3 0 1856327 3 12 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPC1L 23 40623566 40624136 FALSE 709 -0.360421027642709 43 40084126 41229701 1 1 0 1 1 0 1145575 1 6 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPC2 1 167916729 167937040 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPDU1 17 7583529 7592789 FALSE 540 -0.560247871447121 34 7559238 7654707 0.312402751065481 1 0 0.312402751065481 1 0 95469 1 12 15 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPDZ 9 13105704 13279590 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 50 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPEG1 11 59208510 59212951 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPG 16 77007 85853 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPHOSPH10 2 71130314 71150101 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPHOSPH6 16 82147798 82170226 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPHOSPH8 13 19633681 19673459 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPHOSPH9 12 123152320 123244014 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 27 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPI 15 74890005 74902219 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPIG6B 6 31718594 31726714 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 10 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPL 1 43337849 43352772 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 15 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPLKIP 7 40126023 40134652 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPND 19 4343527 4360086 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 12 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPO 17 58269856 58280935 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPP1 23 154778684 154821007 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPP2 17 43875357 43909711 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 17 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPP3 17 43800799 43833170 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 19 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPP4 2 201644870 201698694 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPP5 14 67241109 67335819 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 15 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPP6 7 24573268 24694193 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 11 2 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPP7 10 28050993 28334486 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPPE1 18 11882622 11909223 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPPED1 22 43411196 43507848 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPPED2 11 30384493 30586872 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPRIP 17 17042545 17217679 FALSE 544 -0.432476680468626 39 16223200 17212252 NA 2 NA NA 2 NA 989052 NA 14 44 6 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPST 22 37019635 37029822 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPV17 2 27309492 27325680 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPV17L 16 15395754 15413268 FALSE 519 -0.0068915740419202 77 14482806 15617149 0.252310779181821 4 NA 0.252310779181821 4 NA 1134343 NA 15 5 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPV17L2 19 18193182 18196948 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPZ 1 161304735 161309972 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPZL1 1 167721192 167791919 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPZL2 11 118253403 118264536 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MPZL3 11 118226690 118252350 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MR1 1 181033425 181061938 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRAP 21 32291813 32314784 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRAP2 6 84033756 84090881 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRAS 3 138347648 138405534 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRC1 10 17809344 17911170 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 18 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRC2 17 62627401 62693597 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 34 2 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRE11 11 94415578 94493908 TRUE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 47 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MREG 2 215942805 216034096 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRFAP1 4 6640091 6642745 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRFAP1L1 4 6707701 6709880 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRGBP 20 62796453 62801738 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRGPRD 11 68980021 68980986 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRGPRE 11 3227698 3232386 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRGPRF 11 69004395 69013409 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRGPRG 11 3217944 3218813 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRGPRX1 11 18933813 18939507 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRGPRX2 11 19054455 19060681 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRGPRX3 11 18120955 18138480 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRGPRX4 11 18172837 18174280 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRI1 19 13764532 13774282 FALSE 621 -0.225919342368309 57 13135243 13799725 0.158317833115363 3 NA 0.158317833115363 3 NA 664482 NA 8 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRLN 10 59736692 59756041 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRM1 17 36601572 36608971 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRM2 7 2234231 2242198 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRM3 17 782273 792509 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRNIP 5 179835133 179862173 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRO 18 50795120 50825402 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MROH1 8 144148016 144261940 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 19 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MROH2A 2 233775679 233833423 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 41 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MROH2B 5 40998017 41071342 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 42 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MROH6 8 143566187 143572971 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 15 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MROH7 1 54641754 54710266 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 28 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MROH7-TTC4 1 54641786 54742308 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 38 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MROH8 20 37101226 37179588 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MROH9 1 170935471 171064765 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL1 4 77862520 77952790 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL10 17 47823272 47831534 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL11 11 66435075 66466738 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL12 17 81703357 81707526 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL13 8 120380761 120445402 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL14 6 44113454 44127457 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL15 8 54135210 54147901 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL16 11 59806135 59810872 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL17 11 6680782 6683401 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL18 6 159789812 159798436 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL19 2 75646783 75690851 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 17 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL2 6 43054029 43059806 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL20 1 1401908 1407313 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL21 11 68891276 68903835 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL22 5 154941070 154969411 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL23 11 1947278 1984522 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 1 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL24 1 156737303 156741590 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL27 17 50367857 50373214 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL28 16 366969 371289 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 6 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL3 3 131462212 131502983 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 10 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL30 2 99181079 99197626 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL32 7 42932200 42948958 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL33 2 27771717 27988087 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL34 19 17292609 17306843 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 9 1 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL35 2 86199355 86213794 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL36 5 1798386 1801366 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL37 1 54184041 54225464 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL38 17 75898643 75905413 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL39 21 25585656 25607517 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 11 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL4 19 10251901 10260045 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL40 22 19431902 19436075 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 5 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL41 9 137551199 137552555 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL42 12 93467488 93516213 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL43 10 100969458 100987515 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 25 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL44 2 223957404 223967714 FALSE 103 0.153439494900873 86 223878656 225408986 0.360033220093454 4 NA 0.360033220093454 4 NA 1530330 NA 8 5 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL45 17 38297023 38323218 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL46 15 88459476 88467419 FALSE 497 0.0345658149407989 77 88130833 88530744 0.252310779181821 4 NA 0.252310779181821 4 NA 399911 NA 5 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL47 3 179588285 179604654 FALSE 128 0.146934569885818 86 179242975 181712000 0.360033220093454 4 NA 0.360033220093454 4 NA 2469025 NA 14 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL48 11 73787316 73865133 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL49 11 65122183 65127371 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL50 9 101387633 101398614 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 3 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL51 12 6491886 6493841 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL52 14 22829879 22835037 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL53 2 74471958 74473322 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL54 19 3762664 3768575 FALSE 598 -0.201030278929954 57 3651966 3942109 0.158317833115363 3 NA 0.158317833115363 3 NA 290143 NA 9 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL55 1 228106679 228109312 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL57 13 21176645 21179084 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL58 17 75012670 75021261 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPL9 1 151759643 151763564 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 7 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS10 6 42206801 42217865 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS11 15 88467453 88480773 FALSE 497 0.0345658149407989 77 88130833 88530744 0.252310779181821 4 NA 0.252310779181821 4 NA 399911 NA 5 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS12 19 38930548 38933162 FALSE 647 -0.439700824472697 39 38869641 39110047 NA 2 NA NA 2 NA 240406 NA 10 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS14 1 175010789 175023425 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS15 1 36455718 36464437 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS16 10 73248843 73252693 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS17 7 55951819 55956501 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS18A 6 43671303 43687791 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS18B 6 30617709 30626395 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS18C 4 83455932 83469735 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS2 9 135499984 135504673 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS21 1 150293720 150308979 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS22 3 139005806 139357223 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 18 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS23 17 57834781 57850056 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS24 7 43866558 43869893 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS25 3 15042460 15065335 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS26 20 3045945 3048254 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS27 5 72219409 72320646 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS28 8 79918717 80030289 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS30 5 44808925 44820428 FALSE 166 0.271579430422026 97 44304029 50797082 0.39968910724052 4 NA 0.39968910724052 4 NA 6493053 NA 5 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS31 13 40729135 40771173 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS33 7 141002610 141015228 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS34 16 1771890 1773155 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS35 12 27710773 27756295 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS36 5 69217760 69230129 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS5 2 95087207 95149434 FALSE 71 0.0815929456248537 82 88067910 95104630 0.298111653356898 4 NA 0.298111653356898 4 NA 7036720 NA 11 13 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS6 21 34073224 34143034 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS7 17 75261674 75266373 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRPS9 2 105037983 105099960 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRRF 9 122264603 122331343 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRS2 6 24402908 24426194 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRTFA 22 40410281 40636702 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRTFB 16 14071321 14266773 FALSE 518 0.520580734359524 105 11965400 14446991 0.397448435712946 6 NA 0.397448435712946 6 NA 2481591 NA 8 25 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRTO4 1 19251539 19260128 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 8 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MRVI1 11 10573091 10693988 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 23 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A1 11 60455752 60470760 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A10 11 60785348 60801305 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A12 11 60492778 60507430 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A13 11 60515413 60542721 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A14 11 60378530 60417756 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 18 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A15 11 60756953 60776732 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A18 11 60729304 60744212 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A2 11 60088261 60098466 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A3 11 60056587 60071128 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 6 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A4A 11 60185702 60317944 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A4E 11 60201253 60243088 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A5 11 60429589 60455214 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A6A 11 60172014 60184666 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 7 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A6E 11 60334831 60396596 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 9 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A7 11 60378482 60395951 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MS4A8 11 60699574 60715811 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSANTD1 4 3244369 3271738 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSANTD2 11 124766498 124800673 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSANTD3 9 100427156 100451711 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSANTD3-TMEFF1 9 100442271 100577636 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSANTD4 11 105995623 106022403 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSC 8 71841549 71844468 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSGN1 2 17816496 17817101 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 3 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSH2 2 47402969 47663146 TRUE 61 -0.812791414070772 25 47376988 47829819 0.39968910724052 1 0 0.39968910724052 1 0 452831 1 5 70 10 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSH3 5 80654648 80876460 TRUE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 37 6 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSH4 1 75796882 75913238 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 21 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSH5 6 31739948 31762834 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 24 2 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSH5-SAPCD1 6 31740020 31764851 FALSE 191 0.4220740184256 103 31662510 31761582 0.397448435712946 5 NA 0.397448435712946 5 NA 99072 NA 17 29 2 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSH6 2 47695530 47810101 TRUE 61 -0.812791414070772 25 47376988 47829819 0.39968910724052 1 0 0.39968910724052 1 0 452831 1 5 45 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSI1 12 120341330 120369180 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSI2 17 57255851 57684685 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSL1 17 40122298 40136916 FALSE 551 -0.178633749129299 62 39868328 40193677 0.235629703240478 3 NA 0.235629703240478 3 NA 325349 NA 13 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSL2 3 136148922 136197241 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSL3 23 11758159 11775772 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 15 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSLN 16 760762 768865 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSLNL 16 769428 783370 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 17 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSMB 10 46033307 46046269 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSMO1 4 165327623 165343160 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSMP 9 35752990 35756613 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSN 23 65588377 65741931 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 14 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSR1 8 16107878 16567490 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSRA 8 10054268 10428891 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSRB1 16 1938210 1943326 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSRB2 10 23095506 23122013 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSRB3 12 65278643 65491430 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSS51 10 73423579 73433561 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MST1 3 49683947 49689501 TRUE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 18 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MST1R 3 49887002 49903873 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 27 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSTN 2 190055697 190062729 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSTO1 1 155610205 155614967 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSX1 4 4859666 4863936 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MSX2 5 174724533 174730893 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MT1A 16 56638666 56640087 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MT1B 16 56651899 56653204 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MT1E 16 56625475 56627112 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MT1F 16 56657694 56660698 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MT1G 16 56666731 56668065 FALSE 522 0.601791386013752 107 56658724 56849526 0.397448435712946 6 NA 0.397448435712946 6 NA 190802 NA 5 3 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MT1H 16 56669814 56671129 FALSE 522 0.601791386013752 107 56658724 56849526 0.397448435712946 6 NA 0.397448435712946 6 NA 190802 NA 5 3 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MT1HL1 1 237004103 237004418 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MT1M 16 56632233 56633986 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MT1X 16 56682424 56684196 FALSE 522 0.601791386013752 107 56658724 56849526 0.397448435712946 6 NA 0.397448435712946 6 NA 190802 NA 5 3 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MT2A 16 56608199 56609497 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MT3 16 56589074 56591088 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MT4 16 56565049 56568957 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTA1 14 105419820 105470729 FALSE 474 -0.136925231270881 62 104993000 105529597 0.235629703240478 3 NA 0.235629703240478 3 NA 536597 NA 15 21 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTA2 11 62593214 62601840 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTA3 2 42494569 42756947 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTAP 9 21802543 21937651 TRUE 285 -0.35823375616662 43 20717858 21839172 NA 2 NA NA 2 NA 1121314 NA 21 51 2 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTBP 8 120445400 120542133 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 26 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTCH1 6 36968141 36986298 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 13 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTCH2 11 47617315 47642623 FALSE 346 -0.207050878279221 57 47484529 47631121 0.158317833115363 3 NA 0.158317833115363 3 NA 146592 NA 7 13 0 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTCL1 18 8705661 8832778 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 27 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTCP1 23 155061622 155147937 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 16 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTDH 8 97644179 97728770 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTERF1 7 91692008 91880720 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTERF2 12 106977291 106987166 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTERF3 8 96239398 96261610 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTERF4 2 241072169 241102332 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 15 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTF1 1 37809567 37859620 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTF2 1 93079235 93139081 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTFMT 15 65001512 65029639 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTFP1 22 30425530 30429053 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTFR1 8 65644734 65771261 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTFR1L 1 25818640 25832942 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTFR2 6 136231024 136250335 FALSE 218 -0.114845236609927 67 135285636 137194883 0.31995059840763 3 NA 0.31995059840763 3 NA 1909247 NA 10 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTG1 10 133394094 133421307 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTG2 20 62183029 62203568 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTHFD1 14 64388031 64463457 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 27 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTHFD1L 6 150865549 151101887 FALSE 223 0.236892508535766 96 150395481 152208217 0.39968910724052 4 1 0.39968910724052 4 1 1812736 3 10 29 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTHFD2 2 74198562 74217565 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTHFD2L 4 74114174 74303099 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTHFR 1 11785723 11806920 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 20 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTHFS 15 79833585 79897379 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTHFSD 16 86530176 86555235 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTIF2 2 55236595 55269347 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 13 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTIF3 13 27435643 27450591 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTLN 2 110211529 110245420 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTM1 23 150568619 150673322 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTMR1 23 150692971 150765103 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 16 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTMR10 15 30938941 30991607 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 19 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTMR11 1 149928651 149936869 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTMR12 5 32226994 32313009 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTMR14 3 9649433 9702393 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 19 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTMR2 11 95832882 95925315 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTMR3 22 29883155 30030866 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 25 2 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTMR4 17 58489529 58517905 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 24 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTMR6 13 25246201 25288009 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTMR7 8 17298030 17413528 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 16 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTMR8 23 64268081 64395431 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 16 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTMR9 8 11284416 11328146 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTNR1A 4 186533655 186555567 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTNR1B 11 92969720 92985066 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTO1 6 73461578 73509236 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTOR 1 11106535 11262507 FALSE 10 -0.472587818930969 39 11046896 11690703 NA 2 NA NA 2 NA 643807 NA 11 80 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTPAP 10 30309801 30374448 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTPN 7 135926761 135977353 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTR 1 236795281 236903981 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 35 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTREX 5 55307760 55425581 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 28 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTRF1 13 41216369 41263577 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTRF1L 6 152987362 153002685 FALSE 224 -0.117433393604286 66 152211521 156776133 0.330876988437597 3 0 0.330876988437597 3 0 4564612 3 15 9 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTRNR2L1 17 22523111 22524663 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTRNR2L10 23 55181391 55182920 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 1 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTRNR2L3 20 57358442 57359980 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTRNR2L4 16 3370979 3372740 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 1 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTRNR2L5 10 55599303 55600041 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTRNR2L6 7 142666272 142667718 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 1 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTRNR2L7 10 37601440 37602974 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTRNR2L8 11 10507887 10509189 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTRR 5 7851186 7906025 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 27 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTSS1 8 124550790 124728429 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTSS1L 16 70661204 70686066 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTTP 4 99563761 99623999 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 19 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTURN 7 30134810 30162762 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 3 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTUS1 8 17643795 17800917 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 27 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTUS2 13 28820348 29505947 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 23 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTX1 1 155208699 155213824 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTX2 2 176269395 176338025 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MTX3 5 79976731 79991265 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC1 1 155185824 155192916 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC12 7 100969623 101018949 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 60 19 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC13 3 124905442 124953819 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 12 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC15 11 26559033 26572233 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC16 19 8848844 8981342 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 226 43 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC17 7 101020072 101058745 FALSE 242 -0.76438063458595 27 100996130 101058035 0.255173832388045 0 0 0.255173832388045 0 0 61905 0 2 60 1 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC19 12 40393395 40570832 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 195 10 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC2 11 1074875 1110511 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 61 17 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC20 3 195720882 195741123 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 9 5 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC21 6 30983718 30989903 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 8 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC22 6 31010474 31035402 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 23 14 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC3A 7 100949555 100968346 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 25 20 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC4 3 195746765 195812277 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 42 7 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC5AC 11 1157953 1201138 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 42 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC5B 11 1223066 1262172 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 97 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC6 11 1012821 1036706 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 45 10 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUC7 4 70430492 70482997 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUCL1 12 54830519 54858393 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUCL3 6 30934523 30954221 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 18 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUL1 1 20499448 20508161 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUM1 19 1354711 1378431 FALSE 588 -0.407207315662724 39 1356453 1397505 NA 2 NA NA 2 NA 41052 NA 3 17 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUM1L1 23 106168305 106208956 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUS81 11 65857126 65867653 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUSK 9 110668771 110801620 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 19 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUSTN1 3 52833114 52835219 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUT 6 49430360 49463191 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MUTYH 1 45329163 45340470 TRUE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 20 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MVB12A 19 17405722 17433724 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 9 1 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MVB12B 9 126326849 126507041 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 10 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MVD 16 88651935 88663161 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MVK 12 109573255 109598117 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 11 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MVP 16 29820394 29848039 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MX1 21 41420304 41459214 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 15 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MX2 21 41361943 41409390 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MXD1 2 69897688 69942945 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MXD3 5 177301461 177312757 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 18 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MXD4 4 2247432 2262294 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MXI1 10 110207605 110287365 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MXRA5 23 3308565 3346641 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 37 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MXRA7 17 76672551 76711016 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MXRA8 1 1352689 1361777 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 12 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYADM 19 53866223 53876437 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYADML2 17 81939645 81947233 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYB 6 135181315 135219173 FALSE 217 1.18224606624876 118 135181403 135219191 0.397448435712946 11 NA 0.397448435712946 11 NA 37788 NA 1 68 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYBBP1A 17 4538897 4555631 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 29 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYBL1 8 66562175 66614247 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYBL2 20 43667019 43716496 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYBPC1 12 101568353 101686018 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 33 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYBPC2 19 50432903 50466321 FALSE 670 -0.191579946531989 57 50417807 50629807 0.158317833115363 3 NA 0.158317833115363 3 NA 212000 NA 10 28 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYBPC3 11 47331397 47352702 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 37 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYBPH 1 203167811 203175813 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYBPHL 1 109292365 109307041 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYC 8 127735434 127741434 FALSE 276 1.66320588196239 124 127416112 127743086 0.397448435712946 17 NA 0.397448435712946 17 NA 326974 NA 2 19 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYCBP 1 38862964 38874105 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYCBP2 13 77044655 77327050 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 98 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYCBPAP 17 50508384 50531501 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 20 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYCL 1 39895426 39902256 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYCN 2 15940564 15947007 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 13 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYCT1 6 152697895 152724567 FALSE 224 -0.117433393604286 66 152211521 156776133 0.330876988437597 3 0 0.330876988437597 3 0 4564612 3 15 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYD88 3 38138478 38143022 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYDGF 19 4641374 4670370 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYEF2 15 48134631 48178517 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYEOV 11 69294138 69367726 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYF5 12 80716912 80719673 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYF6 12 80707498 80709474 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYH1 17 10492307 10518543 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 41 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYH10 17 8474205 8630761 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 44 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYH11 16 15703172 15857033 FALSE 520 0.439189613580741 103 15617487 16203579 0.397448435712946 5 NA 0.397448435712946 5 NA 586092 NA 7 45 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYH13 17 10300865 10373130 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 41 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYH14 19 50188186 50310544 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 47 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYH15 3 108380369 108529322 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 44 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYH2 17 10521148 10549957 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 41 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYH3 17 10628526 10657309 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 41 7 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYH4 17 10443290 10469559 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 41 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYH6 14 23381990 23408277 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 43 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYH7 14 23412738 23435718 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 41 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYH7B 20 34975403 35002437 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 45 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYH8 17 10390322 10421950 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 40 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYH9 22 36281277 36388067 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 44 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYL1 2 210290150 210315190 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 8 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYL10 7 101613325 101629296 FALSE 243 -0.216974721306157 57 101087510 101616208 0.158317833115363 3 NA 0.158317833115363 3 NA 528698 NA 13 6 0 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYL12A 18 3247481 3256236 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYL12B 18 3261479 3278431 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYL2 12 110910819 110920722 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYL3 3 46857872 46882169 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYL4 17 47200446 47223679 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYL5 4 673580 682033 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYL6 12 56158161 56163496 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYL6B 12 56152256 56159647 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYL7 7 44138864 44141332 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYL9 20 36541484 36551447 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYLIP 6 16129125 16148248 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 8 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYLK 3 123610049 123884331 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 39 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYLK2 20 31819308 31834689 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYLK3 16 46703369 46790407 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYLK4 6 2663629 2750966 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYLPF 16 30370934 30377991 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYMK 9 133514586 133528612 FALSE 305 0.210954204844519 94 133475068 133579261 0.39968910724052 4 NA 0.39968910724052 4 NA 104193 NA 4 5 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYMX 6 44216939 44218236 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 1 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYNN 3 169772831 169789716 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO10 5 16661914 16936276 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 49 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO15A 17 18108706 18179806 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 78 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO15B 17 75588058 75626501 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 66 15 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO16 13 108596152 109208007 FALSE 441 -0.133025597356164 67 102840913 109206723 0.31995059840763 3 NA 0.31995059840763 3 NA 6365810 NA 12 42 4 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO18A 17 29071124 29180412 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 49 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO18B 22 25742144 26031041 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 53 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO19 17 36495633 36543435 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 32 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO1A 12 57028517 57051198 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO1B 2 191245185 191425389 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 30 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO1C 17 1464186 1492812 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 32 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO1D 17 32492522 32877177 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO1E 15 59132434 59372900 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 34 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO1F 19 8520790 8577577 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 30 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO1G 7 44962662 44979098 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO1H 12 109347903 109455523 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 32 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO3A 10 25934071 26212536 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 36 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO3B 2 170178145 170655171 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 36 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO5A 15 52307283 52529050 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 45 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO5B 18 49822813 50195093 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 42 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO5C 15 52192322 52295798 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 43 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO6 6 75749192 75919537 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 35 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO7A 11 77128264 77215241 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 51 8 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO7B 2 127535802 127637729 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 51 6 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO9A 15 71822289 72118577 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 52 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYO9B 19 17075781 17214537 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 48 10 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYOC 1 171635417 171652683 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYOCD 17 12665890 12768949 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 20 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYOCOS 1 171600621 171638799 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYOD1 11 17719568 17722131 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYOF 10 93306429 93482317 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 53 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYOG 1 203083132 203086036 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYOM1 18 3066807 3220108 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 42 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYOM2 8 2045040 2165552 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 36 6 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYOM3 1 24056035 24112175 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 41 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYORG 9 34366670 34376853 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYOT 5 137867791 137887851 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYOZ1 10 73631654 73641757 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYOZ2 4 119135784 119187789 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYOZ3 5 150660874 150679365 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYPN 10 68106117 68212017 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 26 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYPOP 19 45890020 45902604 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYRF 11 61752642 61788518 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 32 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYRFL 12 69825304 69959097 FALSE 415 0.0296903115421813 74 69585546 71157651 0.246063395031215 4 2 0.246063395031215 4 2 1572105 2 11 25 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYRIP 3 39808914 40260321 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 18 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYSM1 1 58654739 58700092 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYT1 20 64102394 64242253 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 31 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYT1L 2 1789113 2331664 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 25 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MYZAP 15 57591941 57685364 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MZB1 5 139387480 139390081 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MZF1 19 58561931 58573575 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 11 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MZT1 13 72708357 72727687 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 3 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MZT2A 2 131464900 131492743 FALSE 84 -0.292186070013859 45 130656603 132790182 1 2 1 1 2 1 2133579 1 16 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 MZT2B 2 130181737 130190729 FALSE 82 -0.261392512927958 50 127719285 130373216 1 2 1 1 2 1 2653931 1 15 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 N4BP1 16 48538726 48620148 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 N4BP2 4 40056826 40158252 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 30 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 N4BP2L1 13 32400723 32428311 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 N4BP2L2 13 32432417 32538885 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 N4BP3 5 178113443 178126087 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 N6AMT1 21 28872191 28885371 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAA10 23 153929242 153935223 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAA11 4 79225694 79326050 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAA15 4 139301455 139420033 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAA16 13 41311205 41377030 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAA20 20 20017116 20033655 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAA25 12 112026689 112109022 FALSE 421 -0.0176554379426518 77 111455010 112163629 0.252310779181821 4 NA 0.252310779181821 4 NA 708619 NA 11 24 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAA30 14 57390544 57415917 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAA35 9 85941146 86022298 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 22 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAA38 17 7856685 7885238 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAA40 11 63938959 63957328 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAA50 3 113716460 113746300 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAA60 16 3443611 3486963 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAA80 3 50296402 50299421 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAAA 4 75913657 75941051 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAALAD2 11 90131515 90192894 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 20 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAALADL1 11 65044818 65058549 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAALADL2 3 174438573 175810552 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 18 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAB1 2 190646746 190692766 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAB2 12 57088894 57095476 FALSE 410 0.98695157340253 114 57078680 57129111 0.397448435712946 9 NA 0.397448435712946 9 NA 50431 NA 4 18 2 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NABP1 2 191678068 191696659 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NABP2 12 56222015 56229854 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NACA 12 56712428 56731628 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NACA2 17 61590426 61591202 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 3 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NACAD 7 45080438 45088914 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 22 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NACC1 19 13118103 13141141 FALSE 621 -0.225919342368309 57 13135243 13799725 0.158317833115363 3 NA 0.158317833115363 3 NA 664482 NA 8 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NACC2 9 136006537 136095285 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 7 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NADK 1 1751232 1780457 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 16 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NADK2 5 36192592 36242279 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 14 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NADSYN1 11 71453109 71524107 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAE1 16 66802875 66873256 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 29 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAF1 4 163110073 163166921 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAGA 22 42058354 42070842 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAGK 2 71064344 71079805 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAGLU 17 42536172 42544449 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAGPA 16 5024844 5034141 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAGS 17 44004546 44009063 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAIF1 9 128061233 128068206 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAIP 5 70968483 71025114 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NALCN 13 101053776 101416492 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 44 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAMPT 7 106248285 106286326 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 35 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NANOG 12 7787794 7799141 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 5 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NANOGNB 12 7765216 7774121 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NANOGP8 15 35084193 35085110 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NANOS1 10 119029716 119033732 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NANOS2 19 45913214 45914870 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NANOS3 19 13862063 13880757 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NANP 20 25612935 25624175 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NANS 9 98056739 98083075 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAP1L1 12 76036587 76085033 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAP1L2 23 73212299 73214848 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAP1L3 23 93670930 93673568 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAP1L4 11 2944431 2992377 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 14 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAP1L5 4 88695915 88697829 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 3 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAPA 19 47487637 47515240 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 10 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAPB 20 23374519 23421519 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAPEPLD 7 103099776 103149560 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAPG 18 10525905 10552761 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAPRT 8 143574785 143578649 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAPSA 19 50358477 50365830 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NARF 17 82458180 82490537 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 11 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NARS 18 57600656 57622213 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NARS2 11 78435961 78574874 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NASP 1 45583846 45618904 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 18 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAT1 8 18170477 18223689 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAT10 11 34105602 34147670 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAT14 19 55485004 55487568 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAT16 7 101170493 101180276 FALSE 243 -0.216974721306157 57 101087510 101616208 0.158317833115363 3 NA 0.158317833115363 3 NA 528698 NA 13 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAT2 8 18391245 18401218 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 4 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAT8 2 73640832 73642393 FALSE 65 -0.681372041727781 29 73385994 73862307 0.39968910724052 1 0 0.39968910724052 1 0 476313 1 6 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAT8L 4 2059512 2069089 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAT9 17 74770547 74776367 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NATD1 17 21238870 21253410 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAV1 1 201622885 201826969 FALSE 36 -0.0702600326825716 67 201211017 202010242 0.31995059840763 3 NA 0.31995059840763 3 NA 799225 NA 14 38 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAV2 11 19350724 20121598 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 55 9 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAV3 12 77324641 78213008 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 52 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAXD 13 110615460 110639993 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NAXE 1 156591762 156594299 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBAS 2 15166909 15561330 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 57 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBDY 23 56729241 56818380 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 1 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBEA 13 34942287 35673022 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 68 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBEAL1 2 203014879 203226378 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 60 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBEAL2 3 46979683 47009703 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 57 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBL1 1 19596979 19658456 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBN 8 89933336 90003228 TRUE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 37 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBPF1 1 16562319 16613562 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 18 9 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBPF10 1 146064699 146144804 FALSE 28 -2.04260818888899 6 146066363 146964433 0.397448435712946 0 0 0.397448435712946 0 0 898070 0 5 7 3 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBPF11 1 148102046 148152322 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 11 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBPF12 1 146938744 146996202 FALSE 28 -2.04260818888899 6 146066363 146964433 0.397448435712946 0 0 0.397448435712946 0 0 898070 0 5 9 0 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBPF14 1 148531385 148679751 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBPF15 1 144421386 144461674 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBPF19 1 149390623 149556361 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBPF20 1 145289900 145405778 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBPF26 1 120723923 120841481 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBPF3 1 21440128 21485005 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBPF4 1 108223341 108244081 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBPF6 1 108450282 108471002 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBPF9 1 149054027 149103561 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NBR1 17 43170481 43211689 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 25 4 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCALD 8 101686543 102124907 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCAM1 11 112961247 113278436 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 26 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCAM2 21 20998315 21543329 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCAN 19 19211973 19252233 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCAPD2 12 6493356 6531955 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 31 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCAPD3 11 134150119 134225454 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 36 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCAPG 4 17810902 17844862 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 23 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCAPG2 7 158631311 158704829 FALSE 257 0.0628459934565962 82 157576685 159144789 0.298111653356898 4 NA 0.298111653356898 4 NA 1568104 NA 5 28 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCAPH 2 96335787 96373845 FALSE 73 0.130965048807663 86 96195440 96642849 0.360033220093454 4 NA 0.360033220093454 4 NA 447409 NA 10 19 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCAPH2 22 50508216 50523472 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCBP1 9 97633626 97673748 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 23 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCBP2 3 196935402 196942597 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCBP2-AS2 3 196942623 196943540 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCBP2L 23 107774899 107795829 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCBP3 17 3802165 3846251 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCCRP1 19 39196961 39201884 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 7 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCDN 1 35557473 35567274 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCEH1 3 172630249 172711218 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCF1 7 74773962 74789315 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCF2 1 183555563 183590876 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCF4 22 36860988 36878015 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCK1 3 136862208 136949823 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 7 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCK2 2 105744897 105894274 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCKAP1 2 182909115 183038858 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCKAP1L 12 54497711 54548238 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 31 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCKAP5 2 132671799 133568463 FALSE 84 -0.292186070013859 45 130656603 132790182 1 2 1 1 2 1 2133579 1 16 33 5 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCKAP5L 12 49791146 49828750 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCKIPSD 3 48673844 48686364 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 16 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCL 2 231453531 231483641 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCLN 19 3185563 3209575 FALSE 597 -0.316308503877712 46 3155904 3648696 NA 2 NA NA 2 NA 492792 NA 16 16 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCMAP 1 24556111 24609328 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCOA1 2 24491914 24770702 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 27 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCOA2 8 70109762 70403805 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 27 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCOA3 20 47501902 47656877 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 43 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCOA4 10 46005088 46030714 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCOA5 20 46060985 46089952 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCOA6 20 34689097 34825649 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 37 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCOA7 6 125781161 125932030 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 20 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCOR1 17 16029157 16218185 TRUE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 81 6 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCOR2 12 124324415 124567589 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 58 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCR1 19 54906150 54916140 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCR2 6 41335655 41350887 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCR3 6 31588895 31592985 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCR3LG1 11 17351726 17377341 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCS1 9 130172578 130237304 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 8 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NCSTN 1 160343272 160358952 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDC1 1 53765460 53838860 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDC80 18 2571511 2616635 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDE1 16 15643267 15726353 FALSE 520 0.439189613580741 103 15617487 16203579 0.397448435712946 5 NA 0.397448435712946 5 NA 586092 NA 7 22 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDEL1 17 8413131 8490411 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDFIP1 5 142108505 142154443 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDFIP2 13 79481124 79556075 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDN 15 23685400 23687330 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDNF 4 121035613 121073021 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 8 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDOR1 9 137205685 137217009 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 14 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDP 23 43948776 43973504 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDRG1 8 133237171 133302022 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDRG2 14 21016763 21070872 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDRG3 20 36651766 36746078 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDRG4 16 58462846 58513628 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 17 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDST1 5 150485818 150558211 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDST2 10 73801911 73811798 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDST3 4 118033618 118258648 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 17 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDST4 4 114827763 115113876 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 16 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFA1 23 119871487 119876662 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFA10 2 239892450 240025402 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 11 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFA11 19 5891276 5904006 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFA12 12 94897055 95003770 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFA13 19 19515736 19529054 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFA2 5 140638740 140647785 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFA3 19 54102728 54109257 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFA4 7 10931951 10940256 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFA4L2 12 57234903 57240715 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFA5 7 123536997 123558255 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFA6 22 42085525 42090955 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFA7 19 8308768 8321396 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFA8 9 122144058 122159819 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFA9 12 4649095 4694317 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFAB1 16 23581002 23596356 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFAF1 15 41387349 41402519 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFAF2 5 60945129 61153037 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 5 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFAF3 3 49020459 49023495 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFAF4 6 96889313 96897881 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFAF5 20 13784950 13821582 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFAF6 8 94895767 95116455 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFAF7 2 37231631 37253403 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFAF8 17 81239239 81241281 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFB1 14 92116122 92121917 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFB10 16 1959508 1961975 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFB11 23 47142216 47145504 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFB2 7 140690777 140722790 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFB3 2 201071433 201085750 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFB4 3 120596309 120602500 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFB5 3 179604690 179627647 FALSE 128 0.146934569885818 86 179242975 181712000 0.360033220093454 4 NA 0.360033220093454 4 NA 2469025 NA 14 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFB6 9 32552999 32573184 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFB7 19 14566078 14572062 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 3 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFB8 10 100523740 100530000 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFB9 8 124539101 124580648 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFC1 4 139266880 139302551 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFC2 11 78068304 78080219 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFC2-KCTD14 11 78016971 78079865 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFS1 2 206114817 206159603 FALSE 98 -0.534538327599125 34 206124310 206587285 0.312402751065481 1 0 0.312402751065481 1 0 462975 1 5 19 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFS2 1 161197104 161214395 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFS3 11 47565336 47584562 FALSE 346 -0.207050878279221 57 47484529 47631121 0.158317833115363 3 NA 0.158317833115363 3 NA 146592 NA 7 20 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFS4 5 53560633 53683340 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFS5 1 39026318 39034636 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFS6 5 1801400 1816605 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFS7 19 1383527 1395589 FALSE 588 -0.407207315662724 39 1356453 1397505 NA 2 NA NA 2 NA 41052 NA 3 8 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFS8 11 68030617 68036644 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFV1 11 67605653 67612554 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFV2 18 9102630 9134345 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NDUFV3 21 42879644 42913304 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEB 2 151485336 151734487 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 181 15 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEBL 10 20779973 21174187 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 35 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NECAB1 8 90791550 90959408 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 14 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NECAB2 16 83968632 84002776 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 13 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NECAB3 20 33657087 33674463 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NECAP1 12 8076939 8097859 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 8 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NECAP2 1 16440672 16460078 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 8 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NECTIN1 11 119623408 119729084 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 14 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NECTIN2 19 44846175 44889228 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NECTIN3 3 111070071 111275563 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NECTIN4 1 161070995 161089599 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEDD1 12 96907223 96953777 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 16 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEDD4 15 55826922 55993746 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 36 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEDD4L 18 58044367 58401540 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 33 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEDD8 14 24216852 24232454 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEDD8-MDP1 14 24213955 24232352 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEDD9 6 11183298 11382348 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 16 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEFH 22 29480230 29491390 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 14 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEFL 8 24950955 24957110 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEFM 8 24913012 24919098 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEGR1 1 71395940 72282734 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 41 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEIL1 15 75346955 75357114 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEIL2 8 11769639 11787346 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEIL3 4 177309836 177362943 FALSE 157 0.0251014068813815 77 176192989 182751835 0.252310779181821 4 NA 0.252310779181821 4 NA 6558846 NA 7 11 5 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEK1 4 169392857 169612629 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 35 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEK10 3 27110085 27369460 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 39 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEK11 3 131026850 131350465 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 18 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEK2 1 211658657 211675630 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 9 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEK3 13 52132639 52159861 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEK4 3 52708449 52770949 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 16 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEK5 13 52033611 52129078 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 19 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEK6 9 124257606 124353307 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEK7 1 198156963 198322420 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEK8 17 28725897 28743455 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEK9 14 75079353 75127344 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 23 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NELFA 4 1982714 2041903 FALSE 142 0.0353806292410739 77 1699590 2008986 0.252310779181821 4 NA 0.252310779181821 4 NA 309396 NA 7 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NELFB 9 137255173 137273546 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NELFCD 20 58981208 58995133 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NELFE 6 31952087 31959110 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NELL1 11 20669551 21575681 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 22 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NELL2 12 44508275 44921848 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 23 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEMF 14 49782083 49853203 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 36 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEMP1 12 57055643 57088063 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 10 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEMP2 2 190504342 190534722 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NENF 1 212432887 212446379 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEO1 15 73051710 73305206 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 31 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEPRO 3 113002440 113019861 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NES 1 156668763 156677397 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NET1 10 5412551 5458463 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NETO1 18 72742314 72868146 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NETO2 16 47077703 47143997 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEU1 6 31857659 31862906 FALSE 192 0.00493836391948355 77 31761776 31933922 0.252310779181821 4 NA 0.252310779181821 4 NA 172146 NA 16 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEU2 2 233032672 233035057 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEU3 11 74988134 75018893 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEU4 2 241808825 241817413 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 9 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEURL1 10 103493979 103592552 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEURL1B 5 172641266 172691540 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEURL2 20 45888625 45891287 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEURL3 2 96497643 96508109 FALSE 73 0.130965048807663 86 96195440 96642849 0.360033220093454 4 NA 0.360033220093454 4 NA 447409 NA 10 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEURL4 17 7315628 7329393 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 34 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEUROD1 2 181673088 181680876 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEUROD2 17 39603536 39609777 FALSE 550 0.588438690170753 105 39461721 39864123 0.397448435712946 6 NA 0.397448435712946 6 NA 402402 NA 11 5 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEUROD4 12 55019945 55030014 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEUROD6 7 31337461 31340894 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 4 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEUROG1 5 135534282 135535949 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEUROG2 4 112513516 112516172 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEUROG3 10 69571698 69573238 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEXMIF 23 74732856 74925485 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 19 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NEXN 1 77888513 77943895 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NF1 17 31094927 31382116 TRUE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 139 14 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NF2 22 29603556 29698598 TRUE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 40 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFAM1 22 42380410 42432395 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFASC 1 204828651 205022822 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 33 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFAT5 16 69565094 69704666 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFATC1 18 79395856 79529325 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 16 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFATC2 20 51386957 51562831 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFATC2IP 16 28950807 28967097 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFATC3 16 68084751 68229259 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 20 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFATC4 14 24365673 24379604 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 17 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFE2 12 54292111 54301121 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFE2L1 17 48048329 48061487 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFE2L2 2 177227595 177392697 FALSE 88 0.660617078694223 108 177216962 177392831 0.397448435712946 7 NA 0.397448435712946 7 NA 175869 NA 3 32 1 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFE2L3 7 26152240 26187125 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 11 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFE4 7 102973437 102988856 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFIA 1 60865259 61462793 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFIB 9 14081843 14398983 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFIC 19 3314403 3469217 FALSE 597 -0.316308503877712 46 3155904 3648696 NA 2 NA NA 2 NA 492792 NA 16 14 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFIL3 9 91409045 91423862 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFIX 19 12995608 13098796 FALSE 620 0.246971120530574 97 12876151 13116391 0.39968910724052 4 NA 0.39968910724052 4 NA 240240 NA 12 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFKB1 4 102501329 102617302 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFKB2 10 102394110 102402529 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFKBIA 14 35401511 35404749 TRUE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 12 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFKBIB 19 38899700 38908893 FALSE 647 -0.439700824472697 39 38869641 39110047 NA 2 NA NA 2 NA 240406 NA 10 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFKBID 19 35887653 35902303 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFKBIE 6 44258166 44265788 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFKBIL1 6 31546870 31558829 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFKBIZ 3 101827991 101861022 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFRKB 11 129863636 129895590 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 29 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFS1 20 35668055 35699359 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFU1 2 69395750 69437628 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFX1 9 33290511 33371157 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 28 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFXL1 4 47847233 47914667 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFYA 6 41072945 41099976 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFYB 12 104117077 104138289 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NFYC 1 40691648 40771603 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NGB 14 77265483 77271312 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 4 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NGDN 14 23469688 23509862 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NGEF 2 232878686 233013272 FALSE 106 0.545664806611778 105 232662878 232974659 0.397448435712946 6 NA 0.397448435712946 6 NA 311781 NA 5 17 2 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NGF 1 115285918 115338236 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NGFR 17 49495293 49515017 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NGLY1 3 25718944 25790039 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NGRN 15 90265659 90278141 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NHEJ1 2 219075317 219160865 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NHLH1 1 160367067 160372848 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NHLH2 1 115836377 115843917 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NHLRC1 6 18120440 18122687 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NHLRC2 10 113854661 113917194 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NHLRC3 13 39038306 39050109 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NHLRC4 16 566996 569495 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NHP2 5 178149460 178153967 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NHS 23 17375420 17735994 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 25 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NHSL1 6 138422043 138692571 FALSE 220 0.0543375783167098 82 138298662 142443515 0.298111653356898 4 NA 0.298111653356898 4 NA 4144853 NA 16 23 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NHSL2 23 71910818 72161750 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 27 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NICN1 3 49422946 49429326 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NID1 1 235975830 236065162 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 28 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NID2 14 52004803 52069228 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 26 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIF3L1 2 200889327 200903930 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIFK 2 121726945 121736923 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIM1K 5 43192071 43280850 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIN 14 50719763 50831121 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 39 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NINJ1 9 93121489 93134288 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NINJ2 12 564296 663779 FALSE 375 0.00440437382068143 77 66864 894588 0.252310779181821 4 NA 0.252310779181821 4 NA 827724 NA 8 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NINL 20 25452705 25585517 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 27 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIP7 16 69337996 69343111 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIPA1 15 22773063 22829791 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIPA2 15 22838641 22868384 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIPAL1 4 47914142 48040173 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIPAL2 8 98189833 98294393 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIPAL3 1 24415794 24472976 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIPAL4 5 157460019 157474717 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIPBL 5 36876759 37066413 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 55 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIPSNAP1 22 29554808 29581337 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 10 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIPSNAP2 7 55951793 56000181 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIPSNAP3A 9 104747688 104760122 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIPSNAP3B 9 104764157 104777457 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NISCH 3 52455118 52493071 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 31 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIT1 1 161118086 161125445 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NIT2 3 100334701 100361635 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKAIN1 1 31179745 31239554 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKAIN2 6 123804141 124825657 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 9 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKAIN3 8 62248591 62999652 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKAIN4 20 63240784 63272694 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKAP 23 119920672 119943772 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKAPD1 11 112074086 112085150 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKAPL 6 28259320 28260958 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKD1 16 50548330 50649249 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKD2 5 1008829 1038943 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKG7 19 51371606 51372715 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKIRAS1 3 23891660 23946591 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKIRAS2 17 42011382 42025644 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKPD1 19 45149750 45158737 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKRF 23 119588337 119606443 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKTR 3 42600614 42648741 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 27 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKX1-1 4 1402932 1406331 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKX1-2 10 124445239 124450184 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKX2-1 14 36516392 36521149 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 13 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKX2-2 20 21511010 21514026 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKX2-3 10 99532933 99536524 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKX2-4 20 21395367 21398028 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKX2-5 5 173232109 173235357 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKX2-6 8 23702451 23706598 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKX2-8 14 36580579 36582607 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 4 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKX3-1 8 23678693 23682927 TRUE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKX3-2 4 13540830 13545050 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKX6-1 4 84491987 84498450 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKX6-2 10 132783179 132786052 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NKX6-3 8 41645178 41650669 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLE1 17 35128753 35142315 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLGN1 3 173396284 174286644 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLGN2 17 7404874 7419860 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLGN3 23 71144831 71171201 FALSE 714 -0.111342206574026 67 71118719 71290781 0.31995059840763 2 NA 0.31995059840763 2 NA 172062 NA 5 15 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLGN4X 23 5840637 6228863 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 12 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLK 17 28041737 28196381 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLN 5 65722196 65871725 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRC3 16 3539033 3577400 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 24 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRC4 2 32224453 32265854 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRC5 16 56989485 57083531 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 54 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP1 17 5499427 5619424 FALSE 538 -0.524547519785345 34 5395000 5521780 0.312402751065481 1 0 0.312402751065481 1 0 126780 1 7 28 5 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP10 11 7959424 7965426 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP11 19 55785397 55836800 FALSE 680 -0.746582857980643 27 55712403 55809041 0.255173832388045 0 0 0.255173832388045 0 0 96638 0 4 17 2 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP12 19 53793603 53824394 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 17 1 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP13 19 55891699 55932336 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 19 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP14 11 7020446 7071308 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 18 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP2 19 54953130 55001142 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 20 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP2B 23 57677067 57680260 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 1 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP3 1 247416156 247449108 FALSE 45 -0.259945689995748 51 245749557 247491500 NA 2 NA NA 2 NA 1741943 NA 13 16 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP4 19 55836578 55881854 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP5 19 55999726 56061813 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 22 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP6 11 278365 285359 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 16 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP7 19 54923509 54966312 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 17 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP8 19 55947832 55988629 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 17 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRP9 19 55708432 55738402 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 16 0 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NLRX1 11 119166568 119184016 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 17 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMB 15 84655129 84658563 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 4 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMBR 6 142058330 142088799 FALSE 220 0.0543375783167098 82 138298662 142443515 0.298111653356898 4 NA 0.298111653356898 4 NA 4144853 NA 16 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMD3 3 161104696 161253532 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NME1 17 51153536 51162428 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NME1-NME2 17 51153590 51171744 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 9 0 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NME2 17 51165435 51171747 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 4 0 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NME3 16 1770286 1771730 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NME4 16 396725 410367 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NME5 5 138115172 138139443 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NME6 3 48290722 48301685 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NME7 1 169132531 169367967 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NME8 7 37848597 37900401 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 15 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NME9 3 138261437 138329886 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 22 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMI 2 151270465 151290057 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 7 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMNAT1 1 9943428 9985501 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMNAT2 1 183248237 183418602 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMNAT3 3 139560180 139678017 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMRAL1 16 4461680 4495763 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMRK1 9 75060573 75088217 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMRK2 19 3933103 3942416 FALSE 598 -0.201030278929954 57 3651966 3942109 0.158317833115363 3 NA 0.158317833115363 3 NA 290143 NA 9 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMS 2 100470482 100483280 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMT1 17 45051610 45109016 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 12 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMT2 10 15102584 15168693 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMU 4 55595229 55636698 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMUR1 2 231523160 231530495 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NMUR2 5 152391532 152433368 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NNAT 20 37521206 37523693 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NNMT 11 114257787 114313285 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NNT 5 43602692 43707405 FALSE 165 0.25174883805697 97 43494554 44303658 0.39968910724052 4 NA 0.39968910724052 4 NA 809104 NA 4 21 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOA1 4 56963370 56978823 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOB1 16 69741867 69754940 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOBOX 7 144397240 144410227 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 15 3 TRUE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOC2L 1 944204 959309 FALSE 1 -0.106716554101356 67 69453 1051961 0.31995059840763 3 NA 0.31995059840763 3 NA 982508 NA 11 19 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOC3L 10 94333226 94362959 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOC4L 12 132144448 132152473 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOCT 4 139015789 139045939 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOD1 7 30424527 30478784 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 17 4 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOD2 16 50693588 50734041 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NODAL 10 70432315 70447951 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOG 17 56593699 56595590 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOL10 2 10570766 10689987 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 21 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOL11 17 67717833 67744531 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOL12 22 37681673 37693478 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOL3 16 67170154 67175735 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOL4 18 33851100 34224952 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOL4L 20 32443059 32585074 FALSE 689 0.316430543791893 99 32330098 32885548 0.361681390833996 5 NA 0.361681390833996 5 NA 555450 NA 9 16 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOL6 9 33461441 33473930 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 26 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOL7 6 13615327 13632739 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOL8 9 92297358 92325636 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 24 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOL9 1 6521347 6554535 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOLC1 10 102152176 102163871 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOM1 7 156949723 156973182 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 15 7 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOMO1 16 14833681 14896160 FALSE 519 -0.0068915740419202 77 14482806 15617149 0.252310779181821 4 NA 0.252310779181821 4 NA 1134343 NA 15 30 4 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOMO2 16 18417325 18562211 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOMO3 16 16232495 16294814 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NONO 23 71283192 71301168 FALSE 714 -0.111342206574026 67 71118719 71290781 0.31995059840763 2 NA 0.31995059840763 2 NA 172062 NA 5 11 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOP10 15 34341713 34343177 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 2 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOP14 4 2937933 2963385 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 22 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOP16 5 176383938 176388975 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOP2 12 6556863 6568691 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 18 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOP53 19 47745522 47757058 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 13 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOP56 20 2652145 2658393 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOP58 2 202265716 202303666 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOP9 14 24299862 24309124 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 17 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOS1 12 117208142 117452170 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 33 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOS1AP 1 162069774 162370475 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOS2 17 27756766 27800499 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 28 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOS3 7 150990995 151014588 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 27 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOSIP 19 49555711 49590262 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOSTRIN 2 168786539 168865514 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 17 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOTCH1 9 136494433 136545786 TRUE 309 0.283549133746879 97 136494639 136672669 0.39968910724052 4 NA 0.39968910724052 4 NA 178030 NA 2 67 10 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOTCH2 1 119911553 120069626 TRUE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 80 10 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOTCH2NLA 1 146146203 146229026 FALSE 28 -2.04260818888899 6 146066363 146964433 0.397448435712946 0 0 0.397448435712946 0 0 898070 0 5 3 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOTCH3 19 15159038 15200981 TRUE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 53 1 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOTCH4 6 32194843 32224067 TRUE 194 0.0130704912847526 77 32194911 32300724 0.252310779181821 4 NA 0.252310779181821 4 NA 105813 NA 3 47 11 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOTO 2 73202258 73212513 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOTUM 17 81952507 81961840 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 13 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOV 8 119416306 119424353 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOVA1 14 26443093 26597754 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOVA2 19 45933734 45973546 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOX1 23 100843324 100874345 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOX3 6 155395370 155455903 FALSE 224 -0.117433393604286 66 152211521 156776133 0.330876988437597 3 0 0.330876988437597 3 0 4564612 3 15 14 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOX4 11 89324356 89498187 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOX5 15 68930525 69062743 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 24 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOXA1 9 137423350 137434406 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 15 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOXO1 16 1978917 1984192 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NOXRED1 14 77394021 77423517 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 6 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPAP1 15 24675868 24683393 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPAS1 19 47019820 47045775 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 13 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPAS2 2 100820152 100996829 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 21 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPAS3 14 32934933 33804176 FALSE 449 -0.090252011740912 67 31387284 34807549 0.31995059840763 3 NA 0.31995059840763 3 NA 3420265 NA 14 19 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPAS4 11 66421004 66426707 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPAT 11 108157215 108222642 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 29 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPB 17 81900745 81902905 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPBWR1 8 52938431 52941117 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPBWR2 20 64105820 64107171 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPC1 18 23506184 23586898 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 45 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPC1L1 7 44512535 44541315 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 26 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPC2 14 74476192 74494177 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 7 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPDC1 9 137039470 137046203 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPEPL1 20 58689131 58719238 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 13 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPEPPS 17 47522942 47623276 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 24 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPFF 12 53506690 53507638 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPFFR1 10 70247329 70283676 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPFFR2 4 72031804 72148067 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPHP1 2 110122311 110205066 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 22 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPHP3 3 132680609 132722442 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 30 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPHP3-ACAD11 3 132558142 132722459 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 69 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPHP4 1 5862811 5992473 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 31 8 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPHS1 19 35825964 35869287 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 45 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPHS2 1 179550539 179575952 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPIPA1 16 14922802 14952060 FALSE 519 -0.0068915740419202 77 14482806 15617149 0.252310779181821 4 NA 0.252310779181821 4 NA 1134343 NA 15 1 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPIPA5 16 15363624 15381047 FALSE 519 -0.0068915740419202 77 14482806 15617149 0.252310779181821 4 NA 0.252310779181821 4 NA 1134343 NA 15 2 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPIPA8 16 18317942 18336736 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPIPB11 16 29381354 29404029 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPIPB12 16 29483642 29505999 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPIPB15 16 74377878 74392080 FALSE 528 -0.523993511899561 34 73143840 74409864 0.312402751065481 1 0 0.312402751065481 1 0 1266024 1 4 8 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPIPB2 16 11927373 11976643 FALSE 517 -0.0362540617203195 72 11676092 11941161 0.211382613745547 4 NA 0.211382613745547 4 NA 265069 NA 6 12 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPIPB4 16 21834569 21880827 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPIPB6 16 28342555 28363508 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPIPB7 16 28456372 28471175 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPIPB8 16 28637654 28658682 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPIPB9 16 28751787 28772807 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPL 1 182789293 182830384 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPLOC4 17 81556887 81648465 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 25 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPM1 5 171387116 171411137 TRUE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 32 8 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPM2 8 22024125 22036897 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPM3 10 101781325 101783413 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPNT 4 105894775 106004027 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 16 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPPA 1 11845709 11848345 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPPB 1 11857464 11858931 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPPC 2 231921820 231926403 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPR1 1 153678637 153693992 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPR2 9 35792154 35809732 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 26 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPR3 5 32689070 32791724 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPRL2 3 50347330 50351091 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPRL3 16 84271 138860 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 15 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPS 10 127549369 127552639 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPSR1 7 34658239 34878332 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 11 6 TRUE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPTN 15 73560014 73634134 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPTX1 17 80467148 80477843 FALSE 570 -0.251638265228374 50 80089734 80476396 1 2 1 1 2 1 386662 1 9 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPTX2 7 98617297 98629868 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPTXR 22 38818452 38843982 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPVF 7 25224570 25228486 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 4 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPW 16 2009926 2020755 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 3 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPY 7 24284163 24291865 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 4 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPY1R 4 163323961 163344832 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPY2R 4 155208629 155217078 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPY4R2 10 47918739 47923524 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NPY5R 4 163343939 163351934 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NQO1 16 69706996 69726951 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NQO2 6 2987987 3028869 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR0B1 23 30304206 30309598 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR0B2 1 26911489 26913966 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR1D1 17 40092787 40100725 FALSE 551 -0.178633749129299 62 39868328 40193677 0.235629703240478 3 NA 0.235629703240478 3 NA 325349 NA 13 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR1D2 3 23945260 23980618 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR1H2 19 50329653 50382982 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 21 2 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR1H3 11 47248300 47269032 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR1H4 12 100473708 100564413 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR1I2 3 119780484 119818485 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR1I3 1 161229666 161238302 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR2C1 12 95020229 95073703 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR2C2 3 14947584 15053600 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR2C2AP 19 19201416 19203424 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR2E1 6 108166058 108188809 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR2E3 15 71792638 71818259 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR2F1 5 93583224 93594615 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR2F2 15 96325938 96340263 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR2F6 19 17231883 17245940 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 8 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR3C1 5 143277931 143435512 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR3C2 4 148078762 148444698 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR4A1 12 52022832 52059507 FALSE 407 0.0228800075209015 74 52009216 52652154 0.246063395031215 4 2 0.246063395031215 4 2 642938 2 22 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR4A2 2 156324432 156342348 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR4A3 9 99821855 99866891 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR5A1 9 124481236 124507430 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR5A2 1 200027602 200177424 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NR6A1 9 124517275 124771310 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRAP 10 113588716 113664127 FALSE 336 0.281281646454176 97 110567687 113628982 0.39968910724052 4 NA 0.39968910724052 4 NA 3061295 NA 14 45 10 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRARP 9 137300482 137302251 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRAS 1 114704469 114716894 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRBF2 10 63133247 63155031 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRBP1 2 27427790 27442259 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRBP2 8 143833594 143840974 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 13 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRCAM 7 108147623 108456717 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 32 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRDC 1 51789191 51878937 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 35 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRDE2 14 90267856 90332137 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NREP 5 111662621 111997464 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRF1 7 129611714 129757082 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRG1 8 31639386 32767959 FALSE 263 -0.733220050878338 27 30753052 31640612 0.255173832388045 0 0 0.255173832388045 0 0 887560 0 6 550 45 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRG2 5 139846779 140043299 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRG3 10 81875314 82987179 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRG4 15 75935969 76059795 FALSE 492 -0.226543951235523 57 75468765 76202218 0.158317833115363 3 NA 0.158317833115363 3 NA 733453 NA 10 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRGN 11 124739846 124747210 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRIP1 21 14961235 15065936 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRIP2 12 2825348 2835544 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRIP3 11 8980576 9004049 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRK 23 105822543 105958610 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 35 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRL 14 24080107 24115014 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRM 6 30688047 30691420 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 6 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRN1 6 5997999 6007605 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRN1L 16 67884805 67888855 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRP1 10 33177492 33336262 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRP2 2 205681990 205798133 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRROS 3 196639686 196662004 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRSN1 6 24126122 24154900 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRSN2 20 346782 359660 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRTN 19 5823802 5828324 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRXN1 2 49918505 51225575 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 36 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRXN2 11 64606174 64723188 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 36 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NRXN3 14 78170373 79868290 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 32 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSA2 5 74766991 74780113 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSD1 5 177133025 177300215 TRUE 179 -0.193620495435686 57 177081978 177257163 0.158317833115363 3 NA 0.158317833115363 3 NA 175185 NA 2 71 1 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSD2 4 1871424 1982207 FALSE 142 0.0353806292410739 77 1699590 2008986 0.252310779181821 4 NA 0.252310779181821 4 NA 309396 NA 7 78 5 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSD3 8 38269697 38382272 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 62 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSDHL 23 152830967 152869729 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSF 17 46590669 46757464 FALSE 563 -1.07261267965258 19 46067588 46694644 0.39968910724052 0 0 0.39968910724052 0 0 627056 0 6 11 0 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSFL1C 20 1442162 1473842 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSG1 4 4348140 4419058 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSG2 5 174045604 174243501 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSL1 1 212726153 212791782 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSMAF 8 58583504 58659844 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 31 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSMCE1 16 27224991 27268794 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSMCE2 8 125091679 125367120 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSMCE3 15 29264992 29269829 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSMCE4A 10 121957088 121975217 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSMF 9 137447573 137459334 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 17 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSRP1 17 30115521 30186475 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSUN2 5 6599239 6633291 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 20 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSUN3 3 94062916 94128545 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSUN4 1 46340177 46365152 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSUN5 7 73302517 73308867 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSUN6 10 18545561 18659285 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NSUN7 4 40749897 40809985 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NT5C 17 75130225 75131795 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 5 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NT5C1A 1 39659121 39672038 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NT5C1B 2 18562872 18589572 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NT5C1B-RDH14 2 18555545 18589564 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NT5C2 10 103088017 103193306 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NT5C3A 7 33014113 33062797 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 10 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NT5C3B 17 41825181 41836263 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NT5DC1 6 116100849 116249497 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 21 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NT5DC2 3 52524385 52535054 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 15 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NT5DC3 12 103770453 103841197 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 14 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NT5DC4 2 112721486 112742879 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 19 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NT5E 6 85449584 85495791 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NT5M 17 17303335 17347663 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTAN1 16 15037853 15056079 FALSE 519 -0.0068915740419202 77 14482806 15617149 0.252310779181821 4 NA 0.252310779181821 4 NA 1134343 NA 15 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTF3 12 5432112 5521536 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTF4 19 49061066 49065054 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTHL1 16 2039815 2047866 TRUE 508 0.427980297577669 103 2037459 2089430 0.397448435712946 5 NA 0.397448435712946 5 NA 51971 NA 4 12 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTM 11 131370478 132336822 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTMT1 9 129608884 129636131 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 13 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTN1 17 9021542 9244000 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTN3 16 2471499 2474145 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTN4 12 95657807 95791152 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 14 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTN5 19 48661407 48673081 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTNG1 1 107140007 107483458 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTNG2 9 132161676 132244534 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 12 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTPCR 1 232950605 232983882 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTRK1 1 156815640 156881850 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 85 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTRK2 9 84668551 85027070 FALSE 293 -0.328784635523128 44 81990823 84670815 0.213873728132233 2 0 0.213873728132233 2 0 2679992 2 12 388 11 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTRK3 15 87859751 88256768 FALSE 495 -0.903622616738732 22 87028869 87943728 0.34637386060473 0 0 0.34637386060473 0 0 914859 0 2 824 101 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTS 12 85874295 85882992 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTSR1 20 62708837 62762771 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NTSR2 2 11658178 11670164 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUAK1 12 106063340 106140033 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 26 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUAK2 1 205302059 205321791 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUB1 7 151341699 151378449 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 15 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUBP1 16 10743786 10769351 FALSE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUBP2 16 1782901 1789191 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUBPL 14 31489956 31861224 FALSE 449 -0.090252011740912 67 31387284 34807549 0.31995059840763 3 NA 0.31995059840763 3 NA 3420265 NA 14 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUCB1 19 48900050 48923372 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 12 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUCB2 11 17208153 17349980 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUCKS1 1 205712819 205750276 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDC 1 26900238 26946862 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDCD1 8 109240919 109334385 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDCD2 5 163446526 163460140 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDCD3 7 44379121 44490880 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT1 7 2242222 2251146 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT10 23 51332231 51337525 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT11 23 51490011 51496596 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT12 5 103548855 103562793 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT13 10 73110375 73131828 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT14 14 105172938 105181323 FALSE 474 -0.136925231270881 62 104993000 105529597 0.235629703240478 3 NA 0.235629703240478 3 NA 536597 NA 15 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT15 13 48037567 48047222 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT16 3 131381671 131388830 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT16L1 16 4693694 4695859 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT17 1 145845629 145848953 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT18 8 22106872 22109419 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT19 19 32691961 32713796 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT2 9 34329506 34343713 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT21 16 56429133 56452199 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT22 11 64225941 64230686 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT3 6 34279679 34392674 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT4 12 93377883 93408146 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT5 10 12165325 12196144 FALSE 314 0.0797787605968275 82 10796933 12825599 0.298111653356898 4 NA 0.298111653356898 4 NA 2028666 NA 10 10 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT6 4 122888697 122922968 FALSE 153 0.618694253936378 107 122826762 122922331 0.397448435712946 7 NA 0.397448435712946 7 NA 95569 NA 2 26 10 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT7 16 77722492 77742260 FALSE 530 0.0863261484312413 82 76522085 80684905 0.298111653356898 4 NA 0.298111653356898 4 NA 4162820 NA 12 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT8 11 67627938 67629930 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUDT9 4 87422582 87459454 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUF2 1 163266576 163355764 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUFIP1 13 44939249 44989483 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUFIP2 17 29255836 29294118 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUGGC 8 28021964 28083871 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 18 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUMA1 11 72002864 72080693 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 39 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUMB 14 73275107 73458617 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 13 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUMBL 19 40665905 40690972 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP107 12 68686734 68745809 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 28 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP133 1 229440260 229508341 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP153 6 17615035 17706834 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 29 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP155 5 37288137 37371181 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 35 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP160 11 47778087 47848555 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 38 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP188 9 128947699 129007096 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 45 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP205 7 135557919 135648757 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 43 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP210 3 13316235 13420309 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 43 8 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP210L 1 153992685 154155116 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 40 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP214 9 131125561 131234670 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 45 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP35 2 183117513 183161680 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP37 12 102073103 102120124 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP43 6 149724315 149749665 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP50 22 45163841 45188015 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 9 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP54 4 76114659 76148515 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 12 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP58 13 25301524 25349800 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP62 19 49906825 49929763 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP62CL 23 107123427 107206433 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP85 17 75205659 75235758 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 19 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP88 17 5360963 5420160 FALSE 537 -0.704833888728741 29 5091667 5391656 0.39968910724052 1 0 0.39968910724052 1 0 299989 1 7 29 7 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP93 16 56730105 56850286 FALSE 522 0.601791386013752 107 56658724 56849526 0.397448435712946 6 NA 0.397448435712946 6 NA 190802 NA 5 48 11 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUP98 11 3671083 3797792 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 36 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUPL2 7 23181827 23201011 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 9 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUPR1 16 28532708 28539174 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUPR2 7 56114681 56116400 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUS1 6 117675502 117710640 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUSAP1 15 41332694 41381050 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUTF2 16 67846732 67872567 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUTM1 15 34343315 34357737 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 35 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUTM2A 10 87225448 87236908 FALSE 329 -0.116680330790243 67 86927969 87862413 0.31995059840763 3 NA 0.31995059840763 3 NA 934444 NA 13 6 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUTM2B 10 79703227 79714681 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUTM2D 10 87357668 87370695 FALSE 329 -0.116680330790243 67 86927969 87862413 0.31995059840763 3 NA 0.31995059840763 3 NA 934444 NA 13 7 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUTM2E 10 79841358 79850878 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUTM2F 9 94318196 94328644 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 12 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NUTM2G 9 96928310 96940253 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NVL 1 224227334 224330387 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 25 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NWD1 19 16719976 16817963 FALSE 629 -0.412926938873791 39 16377140 16841876 NA 2 NA NA 2 NA 464736 NA 12 27 3 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NWD2 4 37244220 37449465 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXF1 11 62792123 62806302 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXF3 23 103075810 103093125 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXF5 23 101832112 101857577 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXN 17 799313 979770 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXNL1 19 17455425 17460954 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 4 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXNL2 9 88534033 88584274 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXPE1 11 114521645 114559895 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXPE2 11 114678386 114706933 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXPE3 3 101779202 101827392 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXPE4 11 114570591 114595762 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXPH1 7 8433955 8752963 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXPH2 2 138670772 138780348 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXPH3 17 49575858 49583827 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXPH4 12 57216795 57226449 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXT1 20 23350736 23354777 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 2 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NXT2 23 109535781 109544690 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NYAP1 7 100483927 100494799 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NYAP2 2 225399710 225654018 FALSE 103 0.153439494900873 86 223878656 225408986 0.360033220093454 4 NA 0.360033220093454 4 NA 1530330 NA 8 10 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NYNRIN 14 24398786 24419288 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 26 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 NYX 23 41447434 41475710 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OAF 11 120210767 120230332 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OARD1 6 41033627 41097787 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OAS1 12 112906777 112933222 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 9 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OAS2 12 112978395 113011723 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 16 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OAS3 12 112938352 112973249 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 23 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OASL 12 121019111 121039242 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OAT 10 124397303 124418976 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OAZ1 19 2269509 2273490 FALSE 593 -0.414090744354779 39 2233974 2403179 NA 2 NA NA 2 NA 169205 NA 11 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OAZ2 15 64687573 64703281 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OAZ3 1 151762899 151771334 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OBP2A 9 135546139 135549969 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OBP2B 9 133205277 133209250 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OBSCN 1 228208130 228378874 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 192 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OBSL1 2 219550729 219571859 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 40 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OC90 8 132024220 132059380 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OCA2 15 27754875 28099358 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 24 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OCEL1 19 17226204 17229219 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 7 2 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OCIAD1 4 48805212 48861817 FALSE 145 -0.255465332866297 51 48565705 52745352 NA 2 NA NA 2 NA 4179647 NA 10 9 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OCIAD2 4 48885019 48906937 FALSE 145 -0.255465332866297 51 48565705 52745352 NA 2 NA NA 2 NA 4179647 NA 10 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OCLM 1 186400572 186401455 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OCLN 5 69492292 69558104 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OCM 7 5879827 5886362 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OCM2 7 97984684 97991169 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OCRL 23 129539849 129592561 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 25 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OCSTAMP 20 46540946 46550574 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ODAM 4 70196496 70204576 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ODAPH 4 75556048 75565885 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ODC1 2 10439968 10448504 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ODF1 8 102551572 102561017 FALSE 272 0.543983612780906 105 102232195 102651485 0.397448435712946 6 NA 0.397448435712946 6 NA 419290 NA 4 4 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ODF2 9 128455186 128501292 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 23 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ODF2L 1 86346824 86396342 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 19 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ODF3 11 196738 200261 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 6 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ODF3B 22 50529710 50532580 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ODF3L1 15 75723977 75727688 FALSE 492 -0.226543951235523 57 75468765 76202218 0.158317833115363 3 NA 0.158317833115363 3 NA 733453 NA 10 6 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ODF3L2 19 463346 474983 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ODF4 17 8339864 8346048 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ODR4 1 186375838 186421378 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OFD1 23 13734745 13769353 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 25 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OGA 10 101784443 101818465 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OGDH 7 44606572 44709066 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OGDHL 10 49734643 49762379 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 22 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OGFOD1 16 56451490 56479100 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OGFOD2 12 122974580 122980043 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OGFOD3 17 82389223 82418637 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 11 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OGFR 20 62804835 62814000 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OGFRL1 6 71288803 71308950 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OGG1 3 9749944 9788219 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 27 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OGN 9 92383967 92404696 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OGT 23 71533083 71575897 FALSE 715 -0.659931446909816 29 71291831 71671196 0.39968910724052 0 NA 0.39968910724052 0 0 379365 0 7 22 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OIP5 15 41309268 41332621 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OIT3 10 72893581 72933033 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OLA1 2 174072447 174248698 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 10 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OLAH 10 15032227 15073852 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OLFM1 9 135075422 135121179 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OLFM2 19 9853718 9936552 FALSE 612 -0.2463765322708 51 9849131 10133617 NA 2 NA NA 2 NA 284486 NA 11 9 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OLFM3 1 101802574 101997030 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OLFM4 13 53028759 53052057 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OLFML1 11 7485388 7511377 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OLFML2A 9 124777158 124814885 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OLFML2B 1 161983192 162023854 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OLFML3 1 113979391 114035572 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OLIG1 21 33070144 33072420 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OLIG2 21 33025845 33029196 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OLIG3 6 137492202 137494250 FALSE 219 0.602641570411187 107 137197170 138296943 0.397448435712946 6 NA 0.397448435712946 6 NA 1099773 NA 6 4 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OLR1 12 10158301 10172138 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OMA1 1 58415384 58546802 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OMD 9 92414245 92424461 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OMG 17 31272013 31297539 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OMP 11 77102840 77103331 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ONECUT1 15 52756989 52791078 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ONECUT2 18 57435685 57491297 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ONECUT3 19 1752373 1780988 FALSE 591 -0.292096165521122 44 1753671 2129102 0.213873728132233 2 0 0.213873728132233 2 0 375431 2 13 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OOEP 6 73368555 73395133 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OOSP2 11 60040275 60048044 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPA1 3 193593144 193697823 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 31 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPA3 19 45527427 45602212 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPALIN 10 96343216 96359365 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPCML 11 132414977 133532519 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPHN1 23 68042344 68433913 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 24 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPLAH 8 144051266 144063965 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 27 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPN1LW 23 154144224 154159032 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPN1MW 23 154182596 154196135 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPN1SW 7 128772491 128775790 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPN3 1 241590102 241677376 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 23 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPN4 10 86654557 86666848 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPN5 6 47781982 47832780 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPRD1 1 28812142 28871267 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPRK1 8 53225716 53251697 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPRL1 20 64080173 64100643 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPRM1 6 154010496 154246867 FALSE 224 -0.117433393604286 66 152211521 156776133 0.330876988437597 3 0 0.330876988437597 3 0 4564612 3 15 25 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPRPN 4 70397882 70410194 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPTC 1 203494143 203508864 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OPTN 10 13099449 13138308 FALSE 315 0.228244116357697 94 12828838 14820149 0.39968910724052 4 NA 0.39968910724052 4 NA 1991311 NA 13 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10A2 11 6863057 6874717 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10A3 11 7937171 7941708 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10A4 11 6876625 6877619 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10A5 11 6845652 6846705 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10A6 11 7924592 7931268 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10A7 12 55221025 55221975 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10AD1 12 48202083 48203387 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10AG1 11 55965755 55969945 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10C1 6 29439306 29440977 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10D3 11 124183345 124188780 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10G2 14 21633836 21634940 FALSE 447 -0.170207348033168 62 21570031 22633768 0.235629703240478 3 NA 0.235629703240478 3 NA 1063737 NA 7 4 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10G3 14 21568520 21580076 FALSE 447 -0.170207348033168 62 21570031 22633768 0.235629703240478 3 NA 0.235629703240478 3 NA 1063737 NA 7 4 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10G4 11 124012997 124018732 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10G6 11 123994163 123995161 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10G7 11 124036013 124041325 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10G8 11 124026798 124030634 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10G9 11 124023013 124023948 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10H1 19 15804549 15815664 FALSE 627 -0.490607499224798 35 15728649 16234395 0.252021069663427 1 0 0.252021069663427 1 0 505746 1 13 4 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10H2 19 15728020 15729060 FALSE 626 0.131420245867563 86 15354999 15728497 0.360033220093454 4 NA 0.360033220093454 4 NA 373498 NA 10 4 2 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10H3 19 15737985 15742343 FALSE 627 -0.490607499224798 35 15728649 16234395 0.252021069663427 1 0 0.252021069663427 1 0 505746 1 13 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10H4 19 15944299 15950350 FALSE 627 -0.490607499224798 35 15728649 16234395 0.252021069663427 1 0 0.252021069663427 1 0 505746 1 13 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10H5 19 15787661 15801025 FALSE 627 -0.490607499224798 35 15728649 16234395 0.252021069663427 1 0 0.252021069663427 1 0 505746 1 13 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10J1 1 159437845 159443078 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10J5 1 159535078 159536007 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10K1 1 158461574 158470857 FALSE 32 -0.643700144922936 29 158181711 158618068 0.39968910724052 1 0 0.39968910724052 1 0 436357 1 14 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10K2 1 158418210 158426237 FALSE 32 -0.643700144922936 29 158181711 158618068 0.39968910724052 1 0 0.39968910724052 1 0 436357 1 14 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10P1 12 55636860 55637854 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10Q1 11 58227882 58228918 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10R2 1 158472220 158480936 FALSE 32 -0.643700144922936 29 158181711 158618068 0.39968910724052 1 0 0.39968910724052 1 0 436357 1 14 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10S1 11 123976661 123977781 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10T2 1 158398522 158399466 FALSE 32 -0.643700144922936 29 158181711 158618068 0.39968910724052 1 0 0.39968910724052 1 0 436357 1 14 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10V1 11 59712916 59713845 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10W1 11 58266792 58268260 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10X1 1 158578919 158579899 FALSE 32 -0.643700144922936 29 158181711 158618068 0.39968910724052 1 0 0.39968910724052 1 0 436357 1 14 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR10Z1 1 158605268 158612514 FALSE 32 -0.643700144922936 29 158181711 158618068 0.39968910724052 1 0 0.39968910724052 1 0 436357 1 14 7 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR11A1 6 29425504 29457071 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR11G2 14 20190894 20201075 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR11H1 22 15528159 15529139 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 4 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR11H12 14 18601045 18602129 FALSE 444 -1.67303521522048 10 18601172 19424269 0.397448435712946 0 0 0.397448435712946 0 0 823097 0 3 4 3 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR11H2 14 19712904 19714332 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 4 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR11H4 14 20239286 20244349 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR11H6 14 20223710 20224702 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR11L1 1 247840928 247841896 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR12D2 6 29395631 29398008 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 4 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR12D3 6 29373423 29375291 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR13A1 10 45302298 45315608 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR13C2 9 104604671 104605627 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR13C3 9 104535749 104536856 FALSE 300 -1.09016110962055 19 104126637 104599209 0.39968910724052 0 0 0.39968910724052 0 0 472572 0 6 5 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR13C4 9 104526253 104527209 FALSE 300 -1.09016110962055 19 104126637 104599209 0.39968910724052 0 0 0.39968910724052 0 0 472572 0 6 4 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR13C5 9 104598457 104599413 FALSE 300 -1.09016110962055 19 104126637 104599209 0.39968910724052 0 0 0.39968910724052 0 0 472572 0 6 4 4 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR13C8 9 104569168 104570130 FALSE 300 -1.09016110962055 19 104126637 104599209 0.39968910724052 0 0 0.39968910724052 0 0 472572 0 6 4 1 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR13C9 9 104617248 104618204 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR13D1 9 104694379 104695485 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 5 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR13F1 9 104504263 104505222 FALSE 300 -1.09016110962055 19 104126637 104599209 0.39968910724052 0 0 0.39968910724052 0 0 472572 0 6 4 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR13G1 1 247670812 247679739 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR13H1 23 131543976 131545056 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR13J1 9 35869263 35870601 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 4 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR14A16 1 247814660 247824119 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR14A2 1 247722957 247724043 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 3 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR14C36 1 248348775 248349713 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 3 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR14I1 1 248681369 248682304 FALSE 49 -0.100969785741045 67 248650725 248918255 0.31995059840763 3 NA 0.31995059840763 3 NA 267530 NA 7 4 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR14J1 6 29301701 29313017 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR14K1 1 247738615 247739559 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1A1 17 3207539 3218896 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1A2 17 3197519 3198448 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1B1 9 122628579 122629573 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1C1 1 247754846 247760556 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1D2 17 3088484 3104422 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1D5 17 3062669 3063607 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 4 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1E1 17 3397104 3398410 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1E2 17 3432870 3433841 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1F1 16 3204247 3205188 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 4 2 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1G1 17 3126584 3127581 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1I1 19 15082211 15092970 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1J1 9 122476958 122477926 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1J2 9 122510802 122511743 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1J4 9 122519141 122520082 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1K1 9 122800123 122801073 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1L1 9 122661566 122662648 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1L3 9 122675036 122676153 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1L4 9 122723990 122724925 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1L6 9 122742303 122750783 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1L8 9 122567117 122583384 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1M1 19 9087061 9095669 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1N1 9 122526358 122527296 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1N2 9 122553112 122554214 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1Q1 9 122614738 122615682 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1S1 11 58212720 58216084 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR1S2 11 58203202 58204181 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2A1 7 144312464 144322668 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2A12 7 144086278 144098953 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2A14 7 144123176 144131188 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2A2 7 144109514 144110564 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2A25 7 144069811 144075870 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2A4 6 131699644 131701401 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2A42 7 144228244 144239605 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 2 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2A5 7 144048948 144058845 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2A7 7 144257663 144264792 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2AE1 7 99875987 99877057 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2AG1 11 6783020 6791558 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2AG2 11 6765626 6771976 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2AJ1 1 247924889 247935339 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2AK2 1 247965233 247966386 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 5 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2AP1 12 55572468 55575612 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2AT4 11 75081753 75096876 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2B11 1 247449118 247458105 FALSE 45 -0.259945689995748 51 245749557 247491500 NA 2 NA NA 2 NA 1741943 NA 13 4 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2B2 6 27911185 27912396 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2B3 6 29086208 29087313 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2B6 6 27957241 27958182 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2C1 16 3355889 3357294 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2C3 1 247524677 247536440 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2D2 11 6891490 6892599 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2D3 11 6920974 6922043 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2F1 7 143954844 143997312 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2F2 7 143935166 143936279 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2G2 1 247588360 247589313 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2G3 1 247605586 247606515 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2G6 1 248508073 248527337 FALSE 47 -0.595364269339447 32 248406068 248559476 0.364170154096734 1 0 0.364170154096734 1 0 153408 1 6 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2H1 6 29457181 29464328 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2H2 6 29585121 29590500 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2I1P 6 29550407 29557721 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2J1 6 29099657 29102701 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2J2 6 29170907 29175811 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2J3 6 29108059 29114770 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2K2 9 111327483 111330183 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2L13 1 248095184 248101103 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2L2 1 248030070 248042305 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2L3 1 248046836 248063407 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 3 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2L5 1 248013660 248024276 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2L8 1 247948858 247949796 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2M2 1 248174821 248181067 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2M3 1 248197265 248212925 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2M4 1 248231417 248244679 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2M5 1 248145148 248146086 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2M7 1 248323630 248324568 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 3 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2S2 9 35957108 35958154 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T1 1 248403048 248408020 FALSE 47 -0.595364269339447 32 248406068 248559476 0.364170154096734 1 0 0.364170154096734 1 0 153408 1 6 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T10 1 248590487 248597700 FALSE 48 -1.37907623271615 14 248573866 248650633 0.39968910724052 0 0 0.39968910724052 0 0 76767 0 5 4 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T11 1 248623557 248635091 FALSE 48 -1.37907623271615 14 248573866 248650633 0.39968910724052 0 0 0.39968910724052 0 0 76767 0 5 4 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T12 1 248290139 248303424 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T2 1 248445512 248455725 FALSE 47 -0.595364269339447 32 248406068 248559476 0.364170154096734 1 0 0.364170154096734 1 0 153408 1 6 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T27 1 248649838 248655528 FALSE 48 -1.37907623271615 14 248573866 248650633 0.39968910724052 0 0 0.39968910724052 0 0 76767 0 5 4 0 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T29 1 248556912 248562772 FALSE 47 -0.595364269339447 32 248406068 248559476 0.364170154096734 1 0 0.364170154096734 1 0 153408 1 6 2 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T3 1 248473351 248474307 FALSE 47 -0.595364269339447 32 248406068 248559476 0.364170154096734 1 0 0.364170154096734 1 0 153408 1 6 4 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T33 1 248269917 248277976 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T34 1 248573801 248574757 FALSE 48 -1.37907623271615 14 248573866 248650633 0.39968910724052 0 0 0.39968910724052 0 0 76767 0 5 4 3 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T35 1 248636356 248645278 FALSE 48 -1.37907623271615 14 248573866 248650633 0.39968910724052 0 0 0.39968910724052 0 0 76767 0 5 4 1 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T4 1 248361581 248362627 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 5 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T5 1 248488589 248491113 FALSE 47 -0.595364269339447 32 248406068 248559476 0.364170154096734 1 0 0.364170154096734 1 0 153408 1 6 2 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T6 1 248375746 248391811 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2T8 1 247920252 247921956 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 3 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2V1 5 181123122 181131169 FALSE 183 -0.449406845966543 39 180792977 181260799 NA 2 NA NA 2 NA 467822 NA 11 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2V2 5 181147586 181159285 FALSE 183 -0.449406845966543 39 180792977 181260799 NA 2 NA NA 2 NA 467822 NA 11 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2W1 6 29044213 29045240 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2W3 1 247895587 247896531 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2Y1 5 180739042 180740099 FALSE 182 0.260639720850134 97 180601699 180792915 0.39968910724052 4 NA 0.39968910724052 4 NA 191216 NA 3 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR2Z1 19 8721634 8732160 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR3A1 17 3291017 3298360 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR3A2 17 3276942 3386317 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR3A3 17 3411370 3424070 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4A15 11 55367884 55368918 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4A16 11 55343151 55344231 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4A47 11 48488717 48489780 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4A5 11 54706832 54707902 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 5 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4B1 11 48216810 48217739 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4C11 11 55602360 55607645 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4C12 11 49981473 49982535 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4C13 11 49952391 49953419 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4C15 11 55554307 55555419 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4C16 11 55572128 55573060 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 4 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4C3 11 48324920 48328471 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4C46 11 54603069 54603998 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4C5 11 48365485 48366465 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4C6 11 55662201 55666195 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4D1 17 58148449 58159555 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4D10 11 59473315 59479361 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4D11 11 59503576 59504511 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4D2 17 58166982 58171411 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4D5 11 123939543 123940637 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4D6 11 59456938 59457991 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4D9 11 59511368 59520703 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4E1 14 21667940 21673818 FALSE 447 -0.170207348033168 62 21570031 22633768 0.235629703240478 3 NA 0.235629703240478 3 NA 1063737 NA 7 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4E2 14 21653835 21667642 FALSE 447 -0.170207348033168 62 21570031 22633768 0.235629703240478 3 NA 0.235629703240478 3 NA 1063737 NA 7 4 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4F15 15 101812202 101820197 FALSE 504 -0.755474588997147 27 101650010 101922696 0.255173832388045 0 0 0.255173832388045 0 0 272686 0 5 4 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4F17 19 107104 117102 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4F21 8 166049 167043 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4F4 15 101922042 101923113 FALSE 504 -0.755474588997147 27 101650010 101922696 0.255173832388045 0 0 0.255173832388045 0 0 272686 0 5 3 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4F5 1 65419 71585 FALSE 1 -0.106716554101356 67 69453 1051961 0.31995059840763 3 NA 0.31995059840763 3 NA 982508 NA 11 3 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4F6 15 101803509 101806887 FALSE 504 -0.755474588997147 27 101650010 101922696 0.255173832388045 0 0 0.255173832388045 0 0 272686 0 5 4 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4K1 14 19930917 19936757 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 4 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4K13 14 20029399 20036038 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4K14 14 20014143 20019307 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4K15 14 19975444 19976659 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 5 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4K17 14 20110739 20122199 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4K2 14 19875142 19883932 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 4 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4K5 14 19920582 19921659 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4L1 14 20060045 20060983 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 4 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4M1 14 19773504 19783696 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4N2 14 19719015 19830253 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 12 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4N4 15 22094522 22095472 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4N5 14 20138820 20145471 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4P4 11 55635113 55640309 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4Q3 14 19743571 19749469 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4S1 11 48306223 48307152 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4S2 11 55648327 55652854 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4X1 11 48263861 48264778 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR4X2 11 48245056 48246080 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51A2 11 4954772 4955713 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51A4 11 4942831 4947605 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51A7 11 4903783 4909462 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51B2 11 5323359 5324297 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51B4 11 5301014 5301946 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51B5 11 5303444 5505652 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 37 4 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51B6 11 5351508 5352446 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51D1 11 4637477 4643060 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 5 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51E1 11 4643420 4655488 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51E2 11 4680171 4697854 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 5 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51F1 11 4768979 4769938 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 3 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51F2 11 4821321 4822456 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 5 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51G1 11 4923374 4924339 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51G2 11 4912588 4919350 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51I1 11 5440570 5441514 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51I2 11 5449323 5456518 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51L1 11 4994851 5005536 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 5 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51M1 11 5383812 5393263 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 5 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51Q1 11 5422111 5423206 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51S1 11 4847489 4849238 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51T1 11 4881819 4882883 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 5 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR51V1 11 5199735 5200700 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52A1 11 5143219 5154757 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52A5 11 5128776 5138356 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52B2 11 6169330 6170408 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52B4 11 4367263 4368386 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52B6 11 5580877 5581884 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 3 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52D1 11 5488685 5489749 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52E2 11 5058650 5059627 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52E4 11 5880629 5887079 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52E5 11 5893208 5902730 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52E6 11 5840928 5841952 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52E8 11 5856674 5857734 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52H1 11 5544489 5548533 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 5 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52I1 11 4593614 4596574 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52I2 11 4581743 4593340 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 5 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52J3 11 5046526 5047461 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52K1 11 4482646 4493497 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52K2 11 4449295 4450361 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52L1 11 5985892 5986985 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 5 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52M1 11 4545191 4546144 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52N1 11 5786471 5791265 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52N2 11 5820314 5821348 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52N4 11 5754243 5755905 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52N5 11 5776165 5783355 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 5 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52R1 11 4803433 4804380 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 3 3 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR52W1 11 6199146 6200259 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR56A1 11 6019336 6034338 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 TRUE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR56A3 11 5938751 5951347 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR56A4 11 5999445 6006946 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 5 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR56A5 11 5967177 5968494 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR56B1 11 5736448 5738522 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 5 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR56B4 11 6107684 6108835 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5A1 11 59436469 59451380 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5A2 11 59416969 59426412 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5AC2 3 98087173 98088102 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5AK2 11 56988872 56989867 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 1 TRUE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5AN1 11 59358895 59371714 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5AP2 11 56641466 56642471 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5AR1 11 56663662 56664687 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5AS1 11 56027654 56038191 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 5 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5AU1 14 21148370 21159060 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5B12 11 58439077 58442758 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5B17 11 58358124 58359069 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5B2 11 58421264 58428121 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5B21 11 58507175 58508105 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5B3 11 58402464 58406874 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5C1 9 122788933 122789895 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5D13 11 55773438 55774382 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5D14 11 55795556 55796500 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 4 1 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5D16 11 55838752 55839738 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5D18 11 55819607 55820597 FALSE 348 -0.332272831759824 46 55795993 55827931 NA 2 NA NA 2 NA 31938 NA 4 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5F1 11 55993681 55994625 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5H1 3 98130721 98138548 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5H14 3 98147479 98156614 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5H15 3 98166696 98169774 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5H2 3 98282888 98283832 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5H6 3 98263252 98265356 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5I1 11 55935456 55936400 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 3 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5J2 11 56176618 56177556 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5K1 3 98463201 98472924 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5K2 3 98497604 98498663 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5K3 3 98390666 98391631 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5K4 3 98353854 98354819 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5L1 11 55811367 55812476 FALSE 348 -0.332272831759824 46 55795993 55827931 NA 2 NA NA 2 NA 31938 NA 4 4 3 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5L2 11 55827219 55828154 FALSE 348 -0.332272831759824 46 55795993 55827931 NA 2 NA NA 2 NA 31938 NA 4 4 2 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5M1 11 56609236 56614874 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5M10 11 56576736 56577787 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5M11 11 56542262 56543281 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5M3 11 56469274 56473352 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5M8 11 56490349 56491395 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5M9 11 56462469 56463401 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 3 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5P2 11 7795905 7796973 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 5 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5P3 11 7824818 7830840 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5R1 11 56417258 56418232 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5T1 11 56274154 56276819 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 5 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5T2 11 56231282 56234255 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 5 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5T3 11 56252200 56253222 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5V1 6 29353749 29431967 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 21 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR5W2 11 55913650 55914582 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6A2 11 6791736 6799689 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6B1 7 144000320 144008793 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6B2 2 240028965 240030456 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 4 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6B3 2 240045077 240047027 FALSE 109 -0.204551948627658 52 240042747 240874079 0.261858812358373 3 1 0.261858812358373 3 1 831332 2 13 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6C1 12 55314343 55322364 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6C2 12 55444069 55453347 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6C3 12 55330043 55332687 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6C4 12 55549602 55555832 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6C6 12 55293988 55296569 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6C65 12 55400430 55401505 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6C68 12 55492378 55493316 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6C70 12 55469200 55470138 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6C74 12 55247198 55248302 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6C75 12 55362975 55369279 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6C76 12 55426254 55427192 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6F1 1 247711436 247716646 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6J1 14 22630929 22644352 FALSE 447 -0.170207348033168 62 21570031 22633768 0.235629703240478 3 NA 0.235629703240478 3 NA 1063737 NA 7 5 2 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6K2 1 158699678 158700652 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6K3 1 158716327 158720720 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6K6 1 158754720 158755891 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6M1 11 123805335 123806387 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6N1 1 158747814 158772195 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6N2 1 158774222 158781204 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6P1 1 158560606 158570580 FALSE 32 -0.643700144922936 29 158181711 158618068 0.39968910724052 1 0 0.39968910724052 1 0 436357 1 14 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6Q1 11 58030930 58031931 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 5 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6S1 14 20640696 20641691 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 4 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6T1 11 123942785 123943873 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6V1 7 143052320 143053347 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6X1 11 123753488 123754545 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR6Y1 1 158544550 158554405 FALSE 32 -0.643700144922936 29 158181711 158618068 0.39968910724052 1 0 0.39968910724052 1 0 436357 1 14 5 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR7A10 19 14840466 14848922 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR7A17 19 14878203 14886132 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR7A5 19 14824251 14835285 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR7C1 19 14789260 14835376 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR7C2 19 14941489 14942448 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR7D2 19 9178979 9188817 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR7D4 19 9210276 9219589 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR7E24 19 9247344 9252625 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR7G1 19 9114828 9115763 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR7G2 19 9100407 9107475 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 5 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR7G3 19 9126012 9126950 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 4 3 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8A1 11 124566660 124582942 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8B12 11 124539635 124545333 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8B2 11 124382394 124384462 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8B3 11 124395534 124399024 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8B4 11 124423904 124424893 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8B8 11 124437445 124445696 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8D1 11 124302831 124315099 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8D2 11 124319238 124320288 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8D4 11 123902167 123909229 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8G1 11 124241095 124254364 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8G5 11 124256376 124266218 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8H1 11 56288462 56292254 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8H2 11 56103687 56107658 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8H3 11 56122373 56123311 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8I2 11 56093277 56094286 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 5 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8J1 11 56354291 56361511 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8J3 11 56134721 56140201 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8K1 11 56345945 56347031 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8K3 11 56315144 56320639 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 5 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8K5 11 56159394 56160317 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8S1 12 48525632 48528103 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR8U1 11 56375624 56376553 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 3 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR9A2 7 143026158 143027195 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR9A4 7 141916399 141920625 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR9G1 11 56699095 56703884 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 4 4 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR9G4 11 56741223 56748697 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 5 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR9I1 11 58116742 58125530 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR9K2 12 55126406 55132750 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR9Q1 11 58023881 58181616 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 13 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OR9Q2 11 58189070 58194053 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ORAI1 12 121626550 121642677 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ORAI2 7 102433106 102456821 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ORAI3 16 30949066 30956461 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ORC1 1 52372829 52404459 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ORC2 2 200908973 200963680 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ORC3 6 87590067 87667453 FALSE 201 -0.221189436484543 57 87265553 88929289 0.158317833115363 3 NA 0.158317833115363 3 NA 1663736 NA 12 20 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ORC4 2 147930397 148021604 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ORC5 7 104126341 104208047 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ORC6 16 46689643 46698394 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ORM1 9 114323056 114326475 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ORM2 9 114329869 114333252 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ORMDL1 2 189770323 189784371 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 4 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ORMDL2 12 55817919 55821879 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ORMDL3 17 39921041 39927601 FALSE 551 -0.178633749129299 62 39868328 40193677 0.235629703240478 3 NA 0.235629703240478 3 NA 325349 NA 13 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OS9 12 57693955 57721557 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 15 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSBP 11 59574398 59616144 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSBP2 22 30693782 30907824 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSBPL10 3 31657890 32077580 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 20 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSBPL11 3 125528858 125595090 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSBPL1A 18 24162044 24397880 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 27 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSBPL2 20 62231922 62296213 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSBPL3 7 24796539 24981634 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 23 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSBPL5 11 3087116 3166739 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 24 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSBPL6 2 178194481 178402891 FALSE 89 -0.503631193706026 35 177420363 178547579 0.252021069663427 1 0 0.252021069663427 1 0 1127216 1 11 25 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSBPL7 17 47807372 47821834 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 23 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSBPL8 12 76351797 76559809 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSBPL9 1 51577179 51798427 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 37 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSCAR 19 54094668 54102692 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSCP1 1 36415827 36450451 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSER1 20 44196496 44210791 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSGEP 14 20446411 20455105 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 10 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSGEPL1 2 189746660 189763227 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSGIN1 16 83948282 83966332 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSGIN2 8 89901849 89927888 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSM 22 30262829 30266840 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSMR 5 38845858 38945596 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 41 0 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSR1 2 19351485 19358653 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSR2 8 98944403 98952104 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OST4 2 27070472 27071773 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSTC 4 108650584 108667820 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSTF1 9 75088543 75147265 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSTM1 6 108041409 108165854 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OSTN 3 191199241 191265615 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTC 23 38352545 38421450 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 10 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTOA 16 21663971 21761935 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTOF 2 26457203 26558698 FALSE 56 0.00177645496183448 77 25244133 26472685 0.252310779181821 4 NA 0.252310779181821 4 NA 1228552 NA 12 51 3 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTOG 11 17547373 17647150 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 64 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTOGL 12 80099537 80380879 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 60 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTOL1 3 161496808 161503942 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTOP1 4 4188803 4226889 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 10 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTOP2 17 74924275 74933912 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTOP3 17 74935719 74949992 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 11 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTOR 20 16748358 16770062 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTOS 2 240139026 240144562 FALSE 109 -0.204551948627658 52 240042747 240874079 0.261858812358373 3 1 0.261858812358373 3 1 831332 2 13 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTP 5 77628712 77639688 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTUB1 11 63985853 64001811 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTUB2 14 94026329 94048930 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTUD1 10 23439458 23442390 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTUD3 1 19882513 19912945 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTUD4 4 145110838 145180161 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 36 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTUD5 23 48922028 48958386 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 11 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTUD6A 23 70062491 70064179 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTUD6B 8 91070196 91087095 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTUD7A 15 31475398 31870789 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTUD7B 1 149937812 150010676 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTULIN 5 14664664 14699711 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTULINL 5 14581775 14615007 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTX1 2 63050057 63057836 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OTX2 14 56799905 56810479 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 5 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OVCA2 17 2041936 2043430 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OVCH1 12 29412474 29497686 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 29 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OVCH2 11 7689438 7706421 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 15 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OVGP1 1 111414314 111427777 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OVOL1 11 65787022 65797219 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OVOL2 20 17956979 18059188 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 14 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OVOL3 19 36111151 36113711 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 4 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OXA1L 14 22766522 22773041 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 11 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OXCT1 5 41730065 41870519 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OXCT2 1 39769523 39771348 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OXER1 2 42762481 42764261 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OXGR1 13 96985719 96994730 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OXLD1 17 81665036 81666635 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OXNAD1 3 16265160 16350299 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OXR1 8 106359476 106752694 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OXSM 3 25782917 25794534 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OXSR1 3 38165089 38255488 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OXT 20 3071620 3072517 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 OXTR 3 8750408 8769628 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RX1 17 3896592 3916500 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RX2 12 132618776 132622386 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 11 0 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RX3 11 57338374 57370600 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RX4 12 121209857 121234106 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RX5 17 3672199 3696404 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RX5-TAX1BP3 17 3663063 3696194 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 19 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RX6 22 21009808 21028830 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RX7 12 121132819 121188032 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 15 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RY1 3 152834693 152841439 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RY10 23 78945332 78961954 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RY11 19 10111538 10115372 FALSE 612 -0.2463765322708 51 9849131 10133617 NA 2 NA NA 2 NA 284486 NA 11 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RY12 3 151337380 151384812 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 23 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RY13 3 151326312 151329548 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RY14 3 151212117 151278467 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RY2 11 73218298 73236352 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RY4 23 70258170 70259764 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 5 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P2RY6 11 73264505 73298617 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P3H1 1 42746335 42767084 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P3H2 3 189956728 190122437 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 17 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P3H3 12 6828410 6839851 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 14 6 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P3H4 17 41801947 41812604 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 9 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P4HA1 10 73007217 73096974 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P4HA2 5 132191838 132295315 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P4HA3 11 74235801 74311657 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P4HB 17 81843159 81860694 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 P4HTM 3 48989886 49007154 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PA2G4 12 56104319 56113907 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAAF1 11 73876699 73931124 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PABPC1 8 100685816 100722809 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PABPC1L 20 44910062 44959035 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PABPC3 13 25095868 25099254 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PABPC4 1 39560816 39576790 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PABPC4L 4 134196333 134201748 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 5 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PABPC5 23 91434595 91438584 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PABPN1 14 23321289 23326185 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 8 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PABPN1L 16 88863333 88866660 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PACRG 6 162727132 163315492 FALSE 227 0.619362333398079 107 160991922 163578580 0.397448435712946 7 NA 0.397448435712946 7 NA 2586658 NA 5 7 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PACRGL 4 20696282 20752907 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PACS1 11 66070363 66244747 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PACS2 14 105300563 105398147 FALSE 474 -0.136925231270881 62 104993000 105529597 0.235629703240478 3 NA 0.235629703240478 3 NA 536597 NA 15 27 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PACSIN1 6 34466061 34535231 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PACSIN2 22 42835412 43015145 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PACSIN3 11 47177525 47186443 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PADI1 1 17205126 17246005 FALSE 16 0.136831934058324 84 16759339 18631648 0.243587385410565 5 2 0.243587385410565 5 2 1872309 3 15 17 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PADI2 1 17066761 17119435 FALSE 16 0.136831934058324 84 16759339 18631648 0.243587385410565 5 2 0.243587385410565 5 2 1872309 3 15 18 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PADI3 1 17249098 17284233 FALSE 16 0.136831934058324 84 16759339 18631648 0.243587385410565 5 2 0.243587385410565 5 2 1872309 3 15 18 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PADI4 1 17308195 17364004 FALSE 16 0.136831934058324 84 16759339 18631648 0.243587385410565 5 2 0.243587385410565 5 2 1872309 3 15 17 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PADI6 1 17372196 17401699 FALSE 16 0.136831934058324 84 16759339 18631648 0.243587385410565 5 2 0.243587385410565 5 2 1872309 3 15 16 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAEP 9 135561756 135566955 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAF1 19 39385852 39391195 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 13 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAFAH1B1 17 2593210 2685615 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAFAH1B2 11 117144267 117176894 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAFAH1B3 19 42297033 42303546 FALSE 654 0.747123485982104 112 42272182 42297296 0.397448435712946 7 NA 0.397448435712946 7 NA 25114 NA 2 6 0 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAFAH2 1 25959767 25998157 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAG1 8 80967810 81112068 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAGE1 23 49687450 49695993 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAGE2 23 55089008 55092842 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAGE2B 23 55075063 55078909 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAGE3 23 55258412 55264846 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAGE4 23 49829260 49833973 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAGE5 23 55220355 55224108 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAGR1 16 29815952 29820117 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAH 12 102836885 102958410 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAICS 4 56435741 56464579 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAIP1 5 43526267 43557758 FALSE 165 0.25174883805697 97 43494554 44303658 0.39968910724052 4 NA 0.39968910724052 4 NA 809104 NA 4 11 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAIP2 5 139341587 139369720 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAIP2B 2 71182739 71227083 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAK1 11 77321707 77474635 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 24 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAK1IP1 6 10694695 10709782 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAK2 3 196739857 196832647 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAK3 23 110944285 111227361 FALSE 718 0.40922507882028 103 110944546 111246763 0.397448435712946 2 NA 0.397448435712946 2 NA 302217 NA 2 45 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAK4 19 39125770 39182816 FALSE 648 0.681849432781274 108 39125881 39182085 0.397448435712946 7 NA 0.397448435712946 7 NA 56204 NA 1 27 1 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAK5 20 9537389 9839041 FALSE 686 0.917252677641862 114 9537423 9839078 0.397448435712946 9 NA 0.397448435712946 9 NA 301655 NA 1 36 5 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAK6 15 40238759 40277487 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 14 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PALB2 16 23603160 23641310 TRUE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 36 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PALD1 10 70478821 70568449 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PALLD 4 168497066 168928457 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PALM 19 708939 748329 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PALM2 9 109640788 109946703 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PALM2-AKAP2 9 109780309 110172512 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 24 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PALM3 19 14053365 14059159 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 10 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PALMD 1 99645943 99694541 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAM 5 102753981 103031105 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 27 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAM16 16 4331549 4355607 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAMR1 11 35431823 35530300 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAN2 12 56316223 56334053 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAN3 13 28138506 28295335 FALSE 430 0.468082405963645 104 28015579 28659157 0.397448435712946 6 NA 0.397448435712946 6 NA 643578 NA 4 20 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PANK1 10 89579497 89645572 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PANK2 20 3888839 3929882 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PANK3 5 168548495 168579600 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PANK4 1 2508533 2526628 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PANO1 11 797511 799190 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PANX1 11 94128928 94181972 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PANX2 22 50170731 50180294 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PANX3 11 124611490 124620356 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAOX 10 133379234 133391694 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAPLN 14 73237497 73274640 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 29 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAPOLA 14 96501433 96567111 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAPOLB 7 4857733 4861994 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAPOLG 2 60756230 60802085 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 22 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAPPA 9 116153804 116402322 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 31 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAPPA2 1 176463171 176845605 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAPSS1 4 107590276 107720452 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 14 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAPSS2 10 87659613 87747705 FALSE 329 -0.116680330790243 67 86927969 87862413 0.31995059840763 3 NA 0.31995059840763 3 NA 934444 NA 13 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAQR3 4 78887127 78939438 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAQR4 16 2969245 2973489 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAQR5 15 69298947 69407780 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAQR6 1 156243321 156248117 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAQR7 1 25861210 25871253 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAQR8 6 52361421 52407777 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAQR9 3 142949164 142963682 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARD3 10 34109560 34815325 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 28 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARD3B 2 204545793 205620162 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 26 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARD6A 16 67660946 67662778 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARD6B 20 50731544 50756795 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARD6G 18 80157232 80247546 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARG 10 49818279 49970203 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 17 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARK7 1 7954291 7985505 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARL 3 183829271 183884933 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARM1 4 74933095 75050115 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARN 16 14435701 14632728 FALSE 518 0.520580734359524 105 11965400 14446991 0.397448435712946 6 NA 0.397448435712946 6 NA 2481591 NA 8 24 0 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARP1 1 226360691 226408079 TRUE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 37 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARP10 8 143977153 144012772 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 24 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARP11 12 3791047 3873448 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARP12 7 140023744 140063721 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARP14 3 122680618 122730840 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 29 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARP15 3 122577602 122639047 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARP16 15 65234460 65300618 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARP2 14 20343582 20357905 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 16 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARP3 3 51942345 51948867 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARP4 13 24420926 24512810 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 37 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARP6 15 72241181 72272999 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 22 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARP8 5 50665899 50846522 FALSE 166 0.271579430422026 97 44304029 50797082 0.39968910724052 4 NA 0.39968910724052 4 NA 6493053 NA 5 28 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARP9 3 122527924 122564577 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARPBP 12 102120185 102197520 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 18 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARS2 1 54756898 54764514 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARVA 11 12377185 12535356 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARVB 22 43999211 44172949 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PARVG 22 44172956 44219533 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PASD1 23 151563622 151676739 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 18 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PASK 2 241106099 241150264 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 24 4 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PATE1 11 125746293 125749867 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PATE2 11 125776113 125778819 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PATE3 11 125788111 125791600 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PATE4 11 125833316 125840069 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PATJ 1 61742406 62178675 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 45 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PATL1 11 59636716 59668980 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 19 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PATL2 15 44665732 44711316 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PATZ1 22 31325804 31346232 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAWR 12 79574979 79691097 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAX1 20 21705659 21718486 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAX2 10 100735603 100829941 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAX3 2 222199888 222298996 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 84 11 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAX4 7 127610292 127618114 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAX5 9 36833275 37034185 TRUE 288 0.846799697618659 113 36833420 37039349 0.397448435712946 8 NA 0.397448435712946 8 NA 205929 NA 1 52 7 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAX6 11 31784779 31818062 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAX7 1 18631006 18748866 FALSE 16 0.136831934058324 84 16759339 18631648 0.243587385410565 5 2 0.243587385410565 5 2 1872309 3 15 31 4 TRUE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAX8 2 113215997 113278950 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 94 24 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAX9 14 36657568 36679715 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 8 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAXBP1 21 32733899 32771858 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAXIP1 7 154943687 155003084 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PAXX 9 136992418 136993984 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PBDC1 23 76172936 76178204 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PBK 8 27809620 27838095 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PBLD 10 68282660 68333049 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PBOV1 6 138215986 138218491 FALSE 219 0.602641570411187 107 137197170 138296943 0.397448435712946 6 NA 0.397448435712946 6 NA 1099773 NA 6 2 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PBRM1 3 52545352 52685917 TRUE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 54 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PBX1 1 164555584 164899296 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PBX2 6 32184741 32190186 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PBX3 9 125747345 125967377 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PBX4 19 19561707 19618916 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PBXIP1 1 154944076 154956123 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PC 11 66848233 66958376 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 32 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCARE 2 29060976 29074261 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCBD1 10 70882280 70888784 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCBD2 5 134904906 135007959 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCBP1 2 70087454 70089203 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCBP2 12 53452102 53481162 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCBP3 21 45643694 45942454 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCBP4 3 51957454 51974016 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCCA 13 100089015 100530437 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCCB 3 136250306 136337896 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 21 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDH1 5 141853111 141879246 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDH10 4 133149315 133208606 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDH11X 23 91779261 92623230 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 19 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDH12 5 141943585 141969741 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDH15 10 53802771 55627942 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 59 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDH17 13 57631810 57729311 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDH18 4 137518918 137532494 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDH19 23 100291644 100410273 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDH20 13 61409685 61415522 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 12 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDH7 4 30720415 31146805 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDH8 13 52842889 52848641 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDH9 13 66302834 67230445 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 16 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHA1 5 140786136 141012347 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 155 7 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHA10 5 140855883 141012344 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 64 5 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHA11 5 140868183 141012344 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 54 5 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHA12 5 140875302 141012344 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 44 5 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHA13 5 140882208 141012344 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 35 5 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHA2 5 140794852 141012344 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 145 7 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHA3 5 140801028 141012344 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 135 7 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHA4 5 140806929 141012344 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 124 7 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHA5 5 140821604 141012344 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 114 6 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHA6 5 140827958 141012344 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 104 6 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHA7 5 140834248 141012344 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 94 6 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHA8 5 140841187 141012344 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 85 6 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHA9 5 140847463 141012344 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 75 5 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHAC1 5 140926369 141012344 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 25 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHAC2 5 140966235 141012344 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 15 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB1 5 141051135 141059344 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB10 5 141192353 141195642 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB11 5 141199582 141203779 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB12 5 141208697 141212571 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB13 5 141213919 141218979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB14 5 141222932 141227759 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB15 5 141245349 141249365 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB16 5 141181399 141186399 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 5 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB2 5 141094578 141098703 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB3 5 141100473 141103827 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB4 5 141121799 141125623 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB5 5 141135218 141138625 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB6 5 141150022 141153287 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB7 5 141172619 141176383 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB8 5 141177790 141180529 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 9 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHB9 5 141187127 141191541 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 10 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGA1 5 141330571 141512981 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 222 13 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGA10 5 141412987 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 74 5 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGA11 5 141421047 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 54 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGA12 5 141430589 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 44 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGA2 5 141338760 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 212 13 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGA3 5 141343829 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 202 11 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGA4 5 141355025 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 182 9 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGA5 5 141364232 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 162 9 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGA6 5 141373914 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 143 9 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGA7 5 141382739 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 133 8 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGA8 5 141390157 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 114 7 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGA9 5 141402932 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 94 6 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGB1 5 141350102 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 192 9 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGB2 5 141360042 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 172 9 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGB3 5 141370264 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 153 9 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGB4 5 141387698 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 123 7 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGB5 5 141397987 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 104 6 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGB6 5 141408021 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 84 5 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGB7 5 141417645 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 64 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGC3 5 141475947 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 34 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGC4 5 141484997 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 24 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCDHGC5 5 141489121 141512979 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 14 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCED1A 20 2835314 2841190 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCED1B 12 47079603 47236662 FALSE 400 0.134361824814035 86 46793047 47718156 0.360033220093454 4 NA 0.360033220093454 4 NA 925109 NA 5 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCF11 11 83156988 83187451 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCGF1 2 74505043 74508580 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCGF2 17 38733897 38749817 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCGF3 4 705748 770640 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 8 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCGF5 10 91163012 91284331 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCGF6 10 103302796 103351144 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCID2 13 113177539 113208715 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCIF1 20 45934628 45948023 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCK1 20 57561080 57568112 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCK2 14 24094053 24110598 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCLAF 15 64364311 64387687 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCLO 7 82754013 83162930 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 76 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCM1 8 17922840 18029944 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 42 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCMT1 6 149749443 149811420 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCMTD1 8 51817575 51899186 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 8 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCMTD2 20 64255695 64287821 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCNA 20 5114953 5126626 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCNP 3 101574095 101594437 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCNT 21 46324122 46445769 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 63 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCNX1 14 70907405 71115382 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 43 3 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCNX2 1 232983435 233295713 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 45 2 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCNX3 11 65615773 65637439 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 42 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCNX4 14 60091911 60169133 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 25 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCOLCE 7 100602177 100608175 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCOLCE2 3 142815922 142889206 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCP2 19 7631611 7633748 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCP4 21 39867317 39929397 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCP4L1 1 161258727 161285450 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 3 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCSK1 5 96390415 96434143 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCSK1N 23 48831094 48835633 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCSK2 20 17226107 17484578 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 13 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCSK4 19 1481428 1490752 FALSE 589 -0.44786516347233 39 1398963 1609436 NA 2 NA NA 2 NA 210473 NA 14 16 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCSK5 9 75890644 76362339 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 44 8 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCSK6 15 101297142 101525202 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 24 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCSK7 11 117204337 117232525 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCSK9 1 55039548 55064852 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCTP 17 55750979 55842830 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCYOX1 2 70257386 70281191 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCYOX1L 5 149358007 149369653 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCYT1A 3 196214222 196287957 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 18 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCYT1B 23 24558087 24672677 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 10 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PCYT2 17 81900965 81911464 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 16 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDAP1 7 99392048 99408829 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDC 1 186443566 186461122 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDCD1 2 241849881 241858908 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 11 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDCD10 3 167683298 167734939 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDCD11 10 103396626 103446292 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 40 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDCD1LG2 9 5510570 5571254 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDCD2 6 170575295 170584692 FALSE 231 -0.348813635967544 46 170286311 170584601 NA 2 NA NA 2 NA 298290 NA 5 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDCD2L 19 34404384 34426168 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDCD4 10 110871795 110900006 FALSE 336 0.281281646454176 97 110567687 113628982 0.39968910724052 4 NA 0.39968910724052 4 NA 3061295 NA 14 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDCD5 19 32581068 32587452 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDCD6 5 271621 353856 FALSE 160 0.207920496709617 94 224566 833800 0.39968910724052 4 NA 0.39968910724052 4 NA 609234 NA 9 8 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDCD6IP 3 33798352 33869707 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDCD7 15 65117379 65133836 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDCL 9 122798389 122828631 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDCL2 4 55556525 55592212 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDCL3 2 100562690 100576735 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE10A 6 165327287 165988078 FALSE 228 -0.0936034159017556 66 165280135 167136462 0.330876988437597 3 0 0.330876988437597 3 0 1856327 3 12 23 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE11A 2 177623252 178108339 FALSE 89 -0.503631193706026 35 177420363 178547579 0.252021069663427 1 0 0.252021069663427 1 0 1127216 1 11 24 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE12 3 57556276 57566844 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE1A 2 182140036 182523192 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE1B 12 54549350 54579239 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE1C 7 31751179 32299329 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 22 2 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE2A 11 72576141 72674591 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE3A 12 20369245 20684381 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 23 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE3B 11 14643723 14872044 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE4A 19 10416773 10469631 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE4B 1 65792514 66374579 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 22 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE4C 19 18208652 18248200 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 18 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE4D 5 58969038 60522120 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 27 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE4DIP 1 148808181 149048286 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 54 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE5A 4 119494395 119628991 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 24 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE6A 5 149857955 149944793 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 23 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE6B 4 625584 670782 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 24 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE6C 10 93612588 93666010 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE6D 2 231732425 231786272 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE6G 17 81650459 81663112 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE6H 12 14973022 14981865 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE7A 8 65717510 65842322 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE7B 6 135851696 136195574 FALSE 218 -0.114845236609927 67 135285636 137194883 0.31995059840763 3 NA 0.31995059840763 3 NA 1909247 NA 10 14 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE8A 15 84980440 85139145 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 22 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE8B 5 77210449 77429807 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDE9A 21 42653636 42775509 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 21 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDF 16 69328621 69330595 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDGFA 7 497258 520296 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 8 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDGFB 22 39223359 39244751 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDGFC 4 156760454 156971394 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDGFD 11 103907186 104164379 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDGFRA 4 54229097 54298247 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 64 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDGFRB 5 150113837 150155872 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 39 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDGFRL 8 17576433 17644071 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 8 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDHA1 23 19343893 19361705 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 14 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDHA2 4 95840019 95841474 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDHB 3 58427630 58433857 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDHX 11 34915829 35020591 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 15 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDIA2 16 283152 287215 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 12 4 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDIA3 15 43746392 43773279 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 14 3 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDIA4 7 149003062 149028641 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDIA5 3 123067062 123225227 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDIA6 2 10783391 10837977 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDIK1L 1 26111165 26125543 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDILT 16 20359170 20404737 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 12 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDK1 2 172555373 172608669 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 55 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDK2 17 50094737 50112152 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDK3 23 24465221 24541862 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 12 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDK4 7 95583499 95596491 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDLIM1 10 95237572 95291024 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDLIM2 8 22578279 22598025 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 13 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDLIM3 4 185500660 185535612 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 10 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDLIM4 5 132257671 132273454 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDLIM5 4 94451857 94668227 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDLIM7 5 177483394 177497606 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 14 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDP1 8 93857807 93926066 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDP2 16 66878589 66895754 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDPK1 16 2537964 2603188 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 31 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDPN 1 13583465 13617957 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDPR 16 70113626 70162537 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 18 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDRG1 20 31944342 31952092 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDS5A 4 39822863 39977956 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDS5B 13 32586427 32778019 TRUE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 35 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDSS1 10 26697659 26746798 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDSS2 6 107152557 107459564 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 9 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDX1 13 27920020 27926231 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDXDC1 16 14974591 15139339 FALSE 519 -0.0068915740419202 77 14482806 15617149 0.252310779181821 4 NA 0.252310779181821 4 NA 1134343 NA 15 51 5 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDXK 21 43719094 43762307 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 12 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDXP 22 37658727 37666934 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDYN 20 1978757 1994285 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDZD11 23 70286595 70290514 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 6 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDZD2 5 31639410 32110931 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 46 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDZD3 11 119185457 119190223 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDZD4 23 153802166 153830565 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 15 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDZD7 10 101007683 101032295 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDZD8 10 117277274 117375467 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDZD9 16 21983865 22001110 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDZK1 1 145670852 145708148 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDZK1IP1 1 47183593 47191044 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDZRN3 3 73382433 73624940 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 20 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PDZRN4 12 41188448 41574724 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 19 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEA15 1 160205337 160215376 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEAK1 15 77100656 77420144 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEAK3 19 2274622 2282176 FALSE 593 -0.414090744354779 39 2233974 2403179 NA 2 NA NA 2 NA 169205 NA 11 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEAR1 1 156893698 156916434 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEBP1 12 118135858 118145584 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEBP4 8 22713251 23000000 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 8 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PECAM1 17 64319415 64413776 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PECR 2 215996329 216082955 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEF1 1 31629862 31644896 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEG10 7 94656325 94669695 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEG3 19 56810077 56840728 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 23 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PELI1 2 64092652 64144454 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PELI2 14 56117814 56301526 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 8 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PELI3 11 66466327 66477337 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PELO 5 52787940 52804046 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PELP1 17 4669774 4704337 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 22 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEMT 17 17505563 17591708 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PENK 8 56436674 56446734 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEPD 19 33386950 33521794 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PER1 17 8140472 8156506 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 26 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PER2 2 238244038 238290102 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 25 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PER3 1 7784320 7845177 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PERM1 1 975204 982093 FALSE 1 -0.106716554101356 67 69453 1051961 0.31995059840763 3 NA 0.31995059840763 3 NA 982508 NA 11 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PERP 6 138088505 138107511 FALSE 219 0.602641570411187 107 137197170 138296943 0.397448435712946 6 NA 0.397448435712946 6 NA 1099773 NA 6 3 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PES1 22 30576625 30607083 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PET100 19 7629737 7631956 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PET117 20 18137873 18143169 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX1 7 92487020 92528531 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX10 1 2403964 2413797 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX11A 15 89677764 89690783 FALSE 499 -0.326925020976481 44 88857449 89702022 0.213873728132233 2 0 0.213873728132233 2 0 844573 2 13 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX11B 1 145911350 145918837 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX11G 19 7476875 7497449 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX12 17 35574795 35578863 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX13 2 61017225 61051990 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX14 1 10472288 10630758 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 11 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX16 11 45909669 45918812 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX19 1 160276812 160286348 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX2 8 76980258 77001044 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX26 22 18077920 18131138 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX3 6 143450807 143490010 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX5 12 7188685 7218574 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 18 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX5L 3 179794958 180037053 FALSE 128 0.146934569885818 86 179242975 181712000 0.360033220093454 4 NA 0.360033220093454 4 NA 2469025 NA 14 18 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX6 6 42963870 42979220 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PEX7 6 136822564 136913937 FALSE 218 -0.114845236609927 67 135285636 137194883 0.31995059840763 3 NA 0.31995059840763 3 NA 1909247 NA 10 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PF4 4 73981077 73982124 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PF4V1 4 73853189 73854155 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFAS 17 8247618 8270491 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 30 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFDN1 5 140245039 140303121 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFDN2 1 161100556 161118111 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFDN4 20 54207847 54228052 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFDN5 12 53295291 53299450 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFDN6 6 33289302 33298401 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 18 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFKFB1 23 54932961 54998534 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 15 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFKFB2 1 207034366 207081024 FALSE 39 -0.126177318869813 67 206934439 207582013 0.31995059840763 3 NA 0.31995059840763 3 NA 647574 NA 10 21 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFKFB3 10 6144934 6254644 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFKFB4 3 48517684 48562015 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFKL 21 44300051 44327376 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 26 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFKM 12 48105139 48146404 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 28 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFKP 10 3066333 3137712 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 25 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFN1 17 4945652 4949061 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFN2 3 149964904 150050788 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFN3 5 177400107 177400636 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 2 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PFN4 2 24115371 24123477 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGA3 11 61203307 61213098 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGA4 11 61222216 61231927 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 1 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGA5 11 61241042 61251448 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 5 1 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGAM1 10 97426160 97433441 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGAM2 7 44062727 44065587 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGAM4 23 77968874 77969638 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGAM5 12 132710819 132722734 FALSE 427 0.237104219097234 97 132687678 132861490 0.39968910724052 4 NA 0.39968910724052 4 NA 173812 NA 5 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGAP1 2 196833004 196927796 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 27 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGAP2 11 3797724 3826371 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGAP3 17 39671122 39696797 FALSE 550 0.588438690170753 105 39461721 39864123 0.397448435712946 6 NA 0.397448435712946 6 NA 402402 NA 11 13 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGBD1 6 28281572 28302549 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGBD2 1 248906196 248919946 FALSE 49 -0.100969785741045 67 248650725 248918255 0.31995059840763 3 NA 0.31995059840763 3 NA 267530 NA 7 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGBD4 15 34102073 34108684 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGBD5 1 230314482 230426371 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGC 6 41736711 41754109 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGD 1 10398592 10420144 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 13 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGF 14 74941834 74955784 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 8 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGGHG 11 289135 296107 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGGT1B 5 115204012 115262872 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGK1 23 77910739 78129296 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 42 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGK2 6 49785651 49787307 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGLS 19 17511629 17521288 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 6 2 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGLYRP1 19 46019153 46023065 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGLYRP2 19 15468645 15498956 FALSE 626 0.131420245867563 86 15354999 15728497 0.360033220093454 4 NA 0.360033220093454 4 NA 373498 NA 10 11 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGLYRP3 1 153297862 153310718 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGLYRP4 1 153330120 153348840 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGM1 1 63593276 63660245 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGM2 4 37826633 37862937 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGM2L1 11 74330318 74398473 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGM3 6 83161150 83193936 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGM5 9 68328308 68531061 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 12 1 TRUE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGP 16 2211997 2214807 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGPEP1 19 18340587 18369950 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGPEP1L 15 98968230 99007795 FALSE 502 0.795790134074636 112 98648936 98969468 0.397448435712946 8 NA 0.397448435712946 8 NA 320532 NA 2 5 1 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGR 11 101029624 101130524 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 52 5 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGRMC1 23 119236245 119244466 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGRMC2 4 128269237 128288829 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PGS1 17 78378640 78425114 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHACTR1 6 12716805 13290484 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 17 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHACTR2 6 143536845 143831185 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 15 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHACTR3 20 59577509 59847711 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHACTR4 1 28369582 28500369 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHAX 5 126600268 126627252 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHB 17 49404049 49414905 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHB2 12 6965327 6970825 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHC1 12 8913896 8941467 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 18 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHC2 1 33323623 33431052 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHC3 3 170086732 170181749 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHETA1 12 111360651 111369121 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHETA2 22 42074251 42079441 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHEX 23 22032441 22251310 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 23 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF1 6 33410399 33416453 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF10 6 169703905 169725566 FALSE 230 -0.0331467567986683 71 168062029 170285618 0.212208033369562 4 0 0.212208033369562 4 0 2223589 4 11 12 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF11 13 49495610 49528987 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF12 17 28905250 28951771 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF13 1 6613685 6624033 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF14 7 10973336 11169630 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 20 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF19 9 120855652 120894896 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 17 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF2 9 93576407 93679587 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 25 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF20 20 35771974 35950381 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF20L1 8 132775358 132848807 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF21A 11 45929323 46121178 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF21B 22 44881162 45009999 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF23 17 7235028 7239722 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF24 9 34957608 34982544 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF3 6 63635820 63779336 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 41 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF5A 22 41459717 41468725 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF6 23 134373253 134428791 TRUE 722 0.472050795556837 104 134373330 134428675 0.397448435712946 3 NA 0.397448435712946 3 NA 55345 NA 1 41 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF7 3 52410657 52423641 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHF8 23 53936676 54048958 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 27 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHGDH 1 119648411 119744226 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHGR1 15 40351033 40356434 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 3 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHIP 6 78935867 79078236 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 43 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHKA1 23 72578814 72714319 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 32 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHKA2 23 18892300 18984598 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 35 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHKB 16 47461123 47701523 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHKG1 7 56080283 56092996 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHKG2 16 30748270 30761176 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHLDA1 12 76025447 76033932 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHLDA2 11 2928273 2929455 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHLDA3 1 201464383 201469237 FALSE 36 -0.0702600326825716 67 201211017 202010242 0.31995059840763 3 NA 0.31995059840763 3 NA 799225 NA 14 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHLDB1 11 118606440 118658038 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 30 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHLDB2 3 111732497 111976517 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHLDB3 19 43474954 43504935 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 17 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHLPP1 18 62715450 62980433 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 27 0 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHLPP2 16 71637835 71724701 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 26 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHOSPHO1 17 49223362 49230766 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHOSPHO2 2 169694454 169701708 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHOX2A 11 72239077 72245664 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHOX2B 4 41744082 41748970 TRUE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHPT1 9 136848724 136851027 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHRF1 11 576486 612222 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 29 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHTF1 1 113696831 113759489 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHTF2 7 77798792 77957503 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHYH 10 13277796 13302412 FALSE 315 0.228244116357697 94 12828838 14820149 0.39968910724052 4 NA 0.39968910724052 4 NA 1991311 NA 13 9 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHYHD1 9 128920895 128942041 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHYHIP 8 22219704 22232341 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHYHIPL 10 59176590 59247774 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PHYKPL 5 178208497 178232791 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PI15 8 74824534 74855029 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PI16 6 36948263 36964837 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 9 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PI3 20 45174876 45176544 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 3 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PI4K2A 10 97640686 97676434 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PI4K2B 4 25233975 25279092 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PI4KA 22 20707691 20859417 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 67 7 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PI4KB 1 151291797 151327715 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIANP 12 6693792 6700800 FALSE 381 -0.0962006740122522 67 6638345 6823870 0.31995059840763 3 NA 0.31995059840763 3 NA 185525 NA 10 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIAS1 15 68054179 68198603 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 20 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIAS2 18 46803224 46920160 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 17 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIAS3 1 145848522 145859836 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIAS4 19 4007646 4039386 FALSE 599 0.276554850290338 97 3959289 4175087 0.39968910724052 4 NA 0.39968910724052 4 NA 215798 NA 7 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIBF1 13 72782059 73016461 FALSE 436 0.77089885963785 112 72755516 72782148 0.397448435712946 8 NA 0.397448435712946 8 NA 26632 NA 3 20 2 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PICALM 11 85957684 86069882 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 21 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PICK1 22 38056311 38075701 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PID1 2 228850526 229271285 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIDD1 11 799179 809753 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 18 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIEZO1 16 88715338 88785220 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 51 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIEZO2 18 10666483 11148762 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 56 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIF1 15 64815632 64825668 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIFO 1 111346288 111353013 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGA 23 15319451 15335580 TRUE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 10 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGB 15 55318960 55355648 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGBOS1 15 55317184 55319161 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGC 1 172370189 172444086 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGF 2 46580937 46617119 FALSE 59 -0.32871660107588 46 46484402 47170815 NA 2 NA NA 2 NA 686413 NA 11 7 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGG 4 499210 540196 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 20 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGH 14 67581955 67600287 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 10 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGK 1 77088990 77219430 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGL 17 16217191 16351797 FALSE 543 0.357604780343334 101 16029688 16217369 0.397448435712946 5 NA 0.397448435712946 5 NA 187681 NA 3 12 0 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGM 1 160024953 160031991 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGN 18 61905255 62187118 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 29 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGO 9 35088688 35096601 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 17 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGP 21 37059170 37073170 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGQ 16 566995 584136 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 17 6 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGR 1 206928518 206946466 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 15 1 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGS 17 28553383 28571872 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGT 20 45416067 45456934 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGU 20 34560542 34698790 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGV 1 26787472 26798398 FALSE 20 -1.06423626452679 19 26697078 26826772 0.39968910724052 0 0 0.39968910724052 0 0 129694 0 3 8 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGW 17 36535020 36539310 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGX 3 196639775 196736007 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGY 4 88521573 88521789 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 1 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIGZ 3 196946343 196969060 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIH1D1 19 49446298 49453497 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 10 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIH1D2 11 112064010 112074274 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIH1D3 23 107206632 107244243 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3AP1 10 96593312 96720514 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 19 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3C2A 11 17077730 17207983 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 36 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3C2B 1 204422628 204494724 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 52 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3C2G 12 18247614 18648416 FALSE 390 0.862858294165314 113 18262774 18648214 0.397448435712946 8 NA 0.397448435712946 8 NA 385440 NA 2 40 7 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3C3 18 41955206 42087830 FALSE 575 0.704801540732652 110 41955285 45736573 0.397448435712946 7 4 0.397448435712946 7 4 3781288 3 6 56 7 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3CA 3 179148114 179240093 FALSE 127 1.11400170010963 116 179027826 179240114 0.397448435712946 11 NA 0.397448435712946 11 NA 212288 NA 3 56 1 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3CB 3 138652699 138834938 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 34 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3CD 1 9651732 9729114 FALSE 7 0.18541391362799 90 8324498 9691530 0.275334878251284 5 NA 0.275334878251284 5 NA 1367032 NA 12 36 0 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3CG 7 106865278 106907145 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 27 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3IP1 22 31281593 31292534 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3R1 5 68215720 68301821 TRUE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 60 7 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3R2 19 18153118 18170540 TRUE 634 1.19865967518225 118 18153185 18173594 0.397448435712946 11 NA 0.397448435712946 11 NA 20409 NA 3 26 4 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3R3 1 46040140 46133036 TRUE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 33 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3R4 3 130678935 130746829 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 23 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3R5 17 8878911 8965712 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 22 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIK3R6 17 8802723 8867677 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 20 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIKFYVE 2 208266267 208358751 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 48 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PILRA 7 100367530 100400099 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PILRB 7 100352176 100367733 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIM1 6 37170203 37175426 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 13 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIM2 23 48913182 48919024 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIM3 22 49960513 49964080 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIMREG 17 6444415 6451469 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIN1 19 9835257 9849682 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 4 0 TRUE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIN4 23 72181353 72302926 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 30 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PINK1 1 20633455 20651511 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PINLYP 19 43576800 43583964 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PINX1 8 10725399 10839884 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIP 7 143132077 143139746 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIP4K2A 10 22534849 22714555 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIP4K2B 17 38765689 38800126 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIP4K2C 12 57591174 57603418 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIP4P1 14 20457719 20461612 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIP4P2 8 90993796 91041064 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIP5K1A 1 151197949 151249536 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIP5K1B 9 68705414 69009176 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIP5K1C 19 3630183 3700479 FALSE 597 -0.316308503877712 46 3155904 3648696 NA 2 NA NA 2 NA 492792 NA 16 21 2 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIP5KL1 9 127920879 127930797 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIPOX 17 28950513 29057220 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 30 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIR 23 15384799 15493564 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 9 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIRT 17 10822475 10838445 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PISD 22 31618491 31662432 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PITHD1 1 23778405 23788232 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PITPNA 17 1517718 1562816 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PITPNB 22 27851669 27920134 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PITPNC1 17 67377281 67697261 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PITPNM1 11 67491768 67506263 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PITPNM2 12 122983480 123150015 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 29 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PITPNM3 17 6451264 6556494 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 24 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PITRM1 10 3137728 3172841 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 28 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PITX1 5 135027735 135034813 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PITX2 4 110617423 110642123 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PITX3 10 102230186 102241474 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIWIL1 12 130337887 130372637 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 22 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIWIL2 8 22275297 22357563 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 22 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIWIL3 22 24719034 24774720 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 20 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PIWIL4 11 94543840 94621421 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 27 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PJA1 23 69160851 69165793 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 8 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PJA2 5 109334709 109409994 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 13 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PJVK 2 178451346 178461409 FALSE 89 -0.503631193706026 35 177420363 178547579 0.252021069663427 1 0 0.252021069663427 1 0 1127216 1 11 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKD1 16 2088710 2135898 FALSE 508 0.427980297577669 103 2037459 2089430 0.397448435712946 5 NA 0.397448435712946 5 NA 51971 NA 4 78 3 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKD1L1 7 47740202 47948491 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 67 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKD1L3 16 71929538 71999978 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 31 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKD2 4 88007668 88077777 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 18 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKD2L1 10 100288154 100330486 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKD2L2 5 137887968 137942747 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKDCC 2 42048020 42058528 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKDREJ 22 46255663 46263355 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKHD1 6 51615300 52087625 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 85 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKHD1L1 8 109362477 109530330 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 91 16 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKIA 8 78516139 78605267 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKIB 6 122471917 122726373 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 3 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKIG 20 44531785 44624247 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKLR 1 155289293 155301438 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKM 15 72199029 72231822 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKMYT1 16 2968024 2980539 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 16 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKN1 19 14433053 14471867 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 26 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKN2 1 88684222 88836255 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 23 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKN3 9 128702523 128720918 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 23 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKNOX1 21 42974510 43033931 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKNOX2 11 125164687 125433389 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKP1 1 201283452 201332993 FALSE 36 -0.0702600326825716 67 201211017 202010242 0.31995059840763 3 NA 0.31995059840763 3 NA 799225 NA 14 16 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKP2 12 32790745 32896840 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKP3 11 392614 404908 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 17 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PKP4 2 158456964 158682879 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 24 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA1A 3 119597842 119629811 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 12 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G10 16 14672545 14694669 FALSE 519 -0.0068915740419202 77 14482806 15617149 0.252310779181821 4 NA 0.252310779181821 4 NA 1134343 NA 15 1 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G12A 4 109709989 109730077 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G12B 10 72935170 72954778 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G15 16 68245304 68261062 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G16 11 63573195 63616883 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G1B 12 120322111 120327789 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G2A 1 19975431 19980416 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G2C 1 20161253 20177424 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G2D 1 20111939 20119566 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G2E 1 19920009 19923617 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G2F 1 20139326 20150386 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G3 22 31134809 31140607 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G4A 1 186828953 186988981 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G4B 15 41837775 41848147 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 21 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G4C 19 48047843 48110817 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 17 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G4D 15 42067009 42094554 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 22 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G4E 15 41981582 42051190 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 20 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G4F 15 42139034 42156636 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 21 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G5 1 20028179 20091190 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G6 22 38111495 38205690 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2G7 6 46704201 46735693 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLA2R1 2 159932006 160062610 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 31 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLAA 9 26904083 26947463 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLAC1 23 134565838 134764322 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLAC8 4 83090048 83137075 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLAC8L1 5 146084386 146104369 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 4 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLAC9 10 80131682 80145359 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLAG1 8 56160904 56211324 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLAGL1 6 143940300 144064599 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLAGL2 20 32192503 32207791 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLAT 8 42175233 42207724 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLAU 10 73909177 73917497 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 11 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLAUR 19 43646095 43670547 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLB1 2 28457145 28643788 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 58 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLBD1 12 14503661 14568349 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLBD2 12 113358566 113391625 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 14 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCB1 20 8077251 8968360 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 35 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCB2 15 40278176 40307935 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 38 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCB3 11 64251523 64269150 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 30 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCB4 20 9068763 9481242 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 38 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCD1 3 38007496 38029762 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCD3 17 45108967 45133354 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCD4 2 218607765 218637184 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCE1 10 94030812 94332823 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 43 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCG1 20 41136960 41196801 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 33 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCG2 16 81739097 81962693 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 58 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCH1 3 155375580 155745067 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 34 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCH2 1 2425980 2505530 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 35 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCL1 2 197804702 198572581 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 15 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCL2 3 16802651 17090594 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCXD2 3 111674676 111846447 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCXD3 5 41306954 41510628 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLCZ1 12 18683169 18738100 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 17 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLD1 3 171600405 171810950 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 26 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLD2 17 4807096 4823434 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 25 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLD3 19 40348456 40380439 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLD4 14 104924713 104937790 FALSE 473 -0.596284854283221 31 104894354 104991443 0.39968910724052 1 0 0.39968910724052 1 0 97089 1 4 13 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLD5 1 242082986 242524696 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLD6 17 17200995 17206315 FALSE 544 -0.432476680468626 39 16223200 17212252 NA 2 NA NA 2 NA 989052 NA 14 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEC 8 143915147 143976734 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 76 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEK 2 68365173 68397453 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 9 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEK2 14 67386983 67412200 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 9 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHA1 10 122374696 122442602 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 13 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHA2 8 38901235 38973909 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHA3 2 178480468 178516462 FALSE 89 -0.503631193706026 35 177420363 178547579 0.252021069663427 1 0 0.252021069663427 1 0 1127216 1 11 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHA4 19 48837097 48868632 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHA5 12 19129752 19376400 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 34 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHA6 1 204218851 204377665 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 24 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHA7 11 16777317 17014443 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 31 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHA8 7 30027404 30130483 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 17 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHB1 11 73646178 73662819 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHB2 2 131104847 131353709 FALSE 84 -0.292186070013859 45 130656603 132790182 1 2 1 1 2 1 2133579 1 16 25 7 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHD1 14 69484692 69531551 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 13 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHF1 19 29665056 29675457 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHF2 8 95133804 95156684 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHG1 6 150599883 150843665 FALSE 223 0.236892508535766 96 150395481 152208217 0.39968910724052 4 1 0.39968910724052 4 1 1812736 3 10 40 7 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHG2 19 39412585 39428415 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 25 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHG3 14 64704102 64750247 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 28 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHG4 16 67277510 67289499 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 23 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHG4B 5 92151 189972 FALSE 159 -0.112173854210592 67 92307 223843 0.31995059840763 3 NA 0.31995059840763 3 NA 131536 NA 4 29 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHG5 1 6466092 6520061 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 29 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHG6 12 6310436 6328506 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 19 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHG7 12 92702843 92772455 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 14 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHH1 14 67533301 67589612 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 30 5 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHH2 2 43637273 43767987 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 36 6 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHH3 17 42667914 42676994 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHJ1 19 2230084 2237704 FALSE 592 0.687323255861917 111 2129361 2232529 0.397448435712946 7 NA 0.397448435712946 7 NA 103168 NA 3 15 0 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHM1 17 45435900 45490749 FALSE 562 -0.239849237512674 51 45395530 46066680 NA 2 NA NA 2 NA 671150 NA 8 19 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHM2 1 15684332 15734769 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 24 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHM3 2 207821288 208025560 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHN1 1 966497 975865 FALSE 1 -0.106716554101356 67 69453 1051961 0.31995059840763 3 NA 0.31995059840763 3 NA 982508 NA 11 16 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHO1 1 150149183 150164720 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHO2 15 64841883 64868007 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLEKHS1 10 113751454 113783429 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 14 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLET1 11 112248479 112260860 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLG 6 160702238 160753315 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLGLB1 2 87002559 87021852 FALSE 70 -0.71547500568643 29 86815737 88028585 0.39968910724052 1 0 0.39968910724052 1 0 1212848 1 6 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLGLB2 2 87748087 87758793 FALSE 70 -0.71547500568643 29 86815737 88028585 0.39968910724052 1 0 0.39968910724052 1 0 1212848 1 6 2 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLGRKT 9 5357973 5437878 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLIN1 15 89664365 89679427 FALSE 499 -0.326925020976481 44 88857449 89702022 0.213873728132233 2 0 0.213873728132233 2 0 844573 2 13 13 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLIN2 9 19108375 19149290 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLIN3 19 4838341 4867768 FALSE 602 -0.510436259887525 35 4818366 5153517 0.252021069663427 1 0 0.252021069663427 1 0 335151 1 5 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLIN4 19 4502180 4518465 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 18 6 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLIN5 19 4522531 4535224 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 10 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLK1 16 23677656 23690367 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLK2 5 58453982 58460260 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 17 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLK3 1 44800225 44805990 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 15 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLK4 4 127880861 127899195 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLK5 19 1524074 1536046 FALSE 589 -0.44786516347233 39 1398963 1609436 NA 2 NA NA 2 NA 210473 NA 14 10 3 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLLP 16 57248547 57284687 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLN 6 118548298 118560730 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 1 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLOD1 1 11934205 11975538 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 21 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLOD2 3 146069440 146163653 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 20 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLOD3 7 101205977 101218420 FALSE 243 -0.216974721306157 57 101087510 101616208 0.158317833115363 3 NA 0.158317833115363 3 NA 528698 NA 13 20 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLP1 23 103773718 103792619 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLP2 23 49171926 49175239 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLPBP 8 37762593 37779767 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLPP1 5 55424854 55535050 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLPP2 19 281040 291504 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 8 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLPP3 1 56494747 56645301 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLPP4 10 120456954 120589855 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLPP5 8 38263130 38269243 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLPP6 9 4662315 4665258 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLPP7 9 131289459 131359022 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 5 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLPPR1 9 101028709 101325135 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLPPR2 19 11355386 11365698 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLPPR3 19 812488 821977 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 11 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLPPR4 1 99263953 99309590 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLPPR5 1 98890245 99005032 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLRG1 4 154535006 154550435 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLS1 3 142596387 142713664 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 16 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLS3 23 115561174 115650861 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLSCR1 3 146515180 146544864 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLSCR2 3 146391421 146495991 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLSCR3 17 7389727 7394843 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLSCR4 3 146192339 146251179 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 9 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLSCR5 3 146576555 146606216 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 8 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLTP 20 45898621 45912155 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLVAP 19 17351448 17377350 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 9 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLXDC1 17 39063303 39154394 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLXDC2 10 19816239 20289856 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLXNA1 3 126988594 127037392 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 42 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLXNA2 1 208022242 208244320 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 37 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLXNA3 23 154458281 154477779 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 36 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLXNA4 7 132123332 132648688 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 38 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLXNB1 3 48403854 48430051 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 43 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLXNB2 22 50274979 50307627 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 40 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLXNB3 23 153764196 153779346 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 41 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLXNC1 12 94148723 94307675 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 35 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PLXND1 3 129555175 129606818 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 42 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PM20D1 1 205828022 205850132 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 14 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PM20D2 6 89146050 89165565 FALSE 202 -0.0287117028264841 72 88941203 89712641 0.211382613745547 4 NA 0.211382613745547 4 NA 771438 NA 11 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMAIP1 18 59899948 59904306 TRUE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 11 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMCH 12 102196459 102197845 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMEL 12 55954105 55973317 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 26 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMEPA1 20 57648392 57711536 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMF1 1 156212993 156240042 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMF1-BGLAP 1 156212982 156243332 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMFBP1 16 72112157 72176878 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 23 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PML 15 73994673 74047812 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 20 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMM1 22 41576894 41589890 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMM2 16 8788823 8849331 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMP2 8 81440326 81447523 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMP22 17 15229777 15265357 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMPCA 9 136410570 136423761 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMPCB 7 103297422 103329511 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 27 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMS1 2 189784085 189877629 TRUE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 33 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMS2 7 5973239 6009125 TRUE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 25 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PMVK 1 154924734 154936991 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNCK 23 153669730 153689010 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNISR 6 99398051 99425331 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNKD 2 218270392 218346793 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNKP 19 49859882 49878351 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNLDC1 6 159800249 159820704 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNLIP 10 116545931 116567855 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNLIPRP1 10 116590385 116609175 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 12 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNLIPRP3 10 116427867 116477957 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNMA1 14 73711783 73714372 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 4 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNMA2 8 26504686 26514092 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNMA3 23 153056409 153060467 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNMA5 23 152988824 152994127 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNMA6E 23 153395640 153401420 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNMA6F 23 153317681 153321822 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNMA8A 19 46466491 46471563 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNMA8B 19 46486906 46496498 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNMT 17 39667981 39670475 FALSE 550 0.588438690170753 105 39461721 39864123 0.397448435712946 6 NA 0.397448435712946 6 NA 402402 NA 11 6 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNN 14 39175183 39183218 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 14 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNO1 2 68157844 68176238 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNOC 8 28316986 28343355 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNP 14 20468954 20477094 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNPLA1 6 36243203 36312229 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 13 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNPLA2 11 818902 825573 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNPLA3 22 43923739 43964488 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 14 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNPLA4 23 7898247 7927739 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNPLA5 22 43879678 43892013 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNPLA6 19 7534004 7561764 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 35 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNPLA7 9 137459953 137550534 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 36 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNPLA8 7 108470422 108569666 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNPO 17 47941506 47949308 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNPT1 2 55634265 55693910 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 29 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNRC1 6 89080751 89085160 FALSE 202 -0.0287117028264841 72 88941203 89712641 0.211382613745547 4 NA 0.211382613745547 4 NA 771438 NA 11 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PNRC2 1 23956839 23963462 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POC1A 3 52075253 52154690 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POC1B 12 89419718 89526024 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 20 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POC1B-GALNT4 12 89519408 89526262 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POC5 5 75674124 75717481 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PODN 1 53062052 53085502 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PODNL1 19 13931187 13953392 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 14 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PODXL 7 131500262 131558217 FALSE 251 0.627358503902465 107 131327875 131511200 0.397448435712946 7 NA 0.397448435712946 7 NA 183325 NA 2 11 4 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PODXL2 3 127629181 127672809 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POF1B 23 85277396 85379743 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POFUT1 20 32207880 32238667 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POFUT2 21 45263928 45287898 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POGK 1 166839447 166856344 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POGLUT1 3 119468938 119494708 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POGZ 1 151402724 151459465 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLA1 23 24693919 24996986 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 37 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLA2 11 65261762 65305589 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLB 8 42338454 42371808 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLD1 19 50384204 50418016 TRUE 669 0.813634959401384 112 50382408 50417278 0.397448435712946 8 NA 0.397448435712946 8 NA 34870 NA 3 34 3 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLD2 7 44114681 44124358 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLD3 11 74493851 74669117 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 16 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLD4 11 67350777 67356972 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLDIP2 17 28347177 28357522 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLDIP3 22 42583721 42614962 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLE 12 132623753 132687365 TRUE 426 0.61452391701932 107 132621862 132687415 0.397448435712946 7 NA 0.397448435712946 7 NA 65553 NA 2 62 4 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLE2 14 49643555 49688422 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 19 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLE3 9 113407235 113410672 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLE4 2 74958492 74970128 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLG 15 89305198 89334861 FALSE 499 -0.326925020976481 44 88857449 89702022 0.213873728132233 2 0 0.213873728132233 2 0 844573 2 13 39 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLG2 17 64477785 64497036 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLH 6 43576150 43615660 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLI 18 54269404 54321266 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLK 5 75511756 75601144 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLL 10 101578882 101588270 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLM 7 44072247 44082540 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLN 4 2071918 2242121 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 36 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLQ 3 121431427 121546641 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 47 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR1A 2 86020216 86106155 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 36 6 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR1B 2 112541915 112577150 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR1C 6 43509702 43562419 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 43 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR1D 13 27620742 27744237 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR1E 9 37485935 37503697 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2A 17 7484366 7514616 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 38 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2B 4 56977722 57031168 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 25 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2C 16 57462387 57472010 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2D 2 127843551 127858157 FALSE 82 -0.261392512927958 50 127719285 130373216 1 2 1 1 2 1 2653931 1 15 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2E 19 1086579 1095380 FALSE 587 0.217691882461168 93 1042394 1299919 0.39968910724052 4 1 0.39968910724052 4 1 257525 3 12 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2F 22 37952607 38041915 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 29 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2G 11 62761544 62766710 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2H 3 184361718 184368596 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2I 19 36113710 36115346 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 5 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2J 7 102473118 102478907 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2J2 7 102665368 102671629 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 1 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2J3 7 102537918 102572653 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2K 8 100150584 100154002 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2L 11 837356 842545 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR2M 15 57706629 57782762 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR3A 10 77969251 78029545 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR3B 12 106357658 106510198 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 29 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR3C 1 145824088 145842505 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR3D 8 22245104 22254600 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR3E 16 22297375 22335103 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR3F 20 18467127 18484643 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR3G 5 90471748 90514553 FALSE 171 0.215918464504023 94 84137275 90525167 0.39968910724052 4 NA 0.39968910724052 4 NA 6387892 NA 10 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR3GL 1 145964702 145978848 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR3H 22 41525804 41544606 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLR3K 16 46407 53628 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 3 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POLRMT 19 617224 633604 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 26 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POM121 7 72879365 72951440 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 19 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POM121C 7 75416787 75486271 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 16 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POM121L12 7 53035642 53036924 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POM121L2 6 27285903 27312170 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POMC 2 25160853 25168903 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 4 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POMGNT1 1 46188682 46220305 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 29 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POMGNT2 3 43079232 43106076 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POMK 8 43093506 43123434 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POMP 13 28659104 28678925 FALSE 430 0.468082405963645 104 28015579 28659157 0.397448435712946 6 NA 0.397448435712946 6 NA 643578 NA 4 6 0 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POMT1 9 131502902 131523806 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 19 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POMT2 14 77274956 77320884 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 22 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POMZP3 7 76609986 76627261 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PON1 7 95297676 95324707 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PON2 7 95404863 95435329 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PON3 7 95359944 95396368 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POP1 8 98117297 98159834 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POP4 19 29604017 29617237 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 8 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POP5 12 120578764 120581398 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POP7 7 100706053 100707495 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POPDC2 3 119636457 119665324 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 7 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POPDC3 6 105158280 105179995 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POR 7 75899200 75986855 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 15 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PORCN 23 48508962 48520814 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 13 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POSTN 13 37562583 37598844 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 25 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POT1 7 124822386 124929983 TRUE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 37 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POTEB 15 21846329 21877703 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 1 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POTEB2 15 20835372 20866314 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POTEB3 15 21408243 21440451 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 6 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POTEC 18 14507339 14543585 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POTED 21 13609858 13641585 FALSE 694 -2.18012361865479 4 10605580 14109044 0.397448435712946 0 0 0.397448435712946 0 0 3503464 0 4 7 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POTEE 2 131218067 131265278 FALSE 84 -0.292186070013859 45 130656603 132790182 1 2 1 1 2 1 2133579 1 16 17 7 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POTEF 2 130074030 130129222 FALSE 82 -0.261392512927958 50 127719285 130373216 1 2 1 1 2 1 2653931 1 15 16 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POTEG 14 19402486 19434341 FALSE 444 -1.67303521522048 10 18601172 19424269 0.397448435712946 0 0 0.397448435712946 0 0 823097 0 3 9 5 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POTEH 22 15690026 15721631 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 9 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POTEI 2 130459455 130509666 FALSE 83 -2.75809702681023 3 130463255 130655062 0.397448435712946 0 0 0.397448435712946 0 0 191807 0 4 13 6 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POTEJ 2 130611481 130658091 FALSE 83 -2.75809702681023 3 130463255 130655062 0.397448435712946 0 0 0.397448435712946 0 0 191807 0 4 16 8 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POTEM 14 18967434 18999012 FALSE 444 -1.67303521522048 10 18601172 19424269 0.397448435712946 0 0 0.397448435712946 0 0 823097 0 3 7 6 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU1F1 3 87259404 87276587 FALSE 121 -0.0206780540273211 77 75738958 89482041 0.252310779181821 4 NA 0.252310779181821 4 NA 13743083 NA 14 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU2AF1 11 111352252 111455630 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU2F1 1 167220829 167427345 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU2F2 19 42086110 42196585 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 13 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU2F3 11 120236640 120319944 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU3F1 1 38044611 38046794 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU3F2 6 98834592 98839470 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU3F3 2 104855511 104858574 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU3F4 23 83508261 83512127 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU4F1 13 78598362 78603560 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU4F2 4 146638893 146642474 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU4F3 5 146338839 146341722 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU5F1 6 31164337 31180731 FALSE 189 -0.0260643675989525 69 31143403 31355632 0.39968910724052 3 1 0.39968910724052 3 1 212229 2 5 8 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU5F1B 8 127322183 127420066 FALSE 276 1.66320588196239 124 127416112 127743086 0.397448435712946 17 NA 0.397448435712946 17 NA 326974 NA 2 5 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU5F2 5 93733220 93741637 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU6F1 12 51186936 51217708 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 POU6F2 7 38977998 39493095 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PP2D1 3 19979961 20012330 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPA1 10 70202830 70233911 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPA2 4 105369077 105474081 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPAN 19 10106289 10111634 FALSE 612 -0.2463765322708 51 9849131 10133617 NA 2 NA NA 2 NA 284486 NA 11 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPAN-P2RY11 19 10106223 10114780 FALSE 612 -0.2463765322708 51 9849131 10133617 NA 2 NA NA 2 NA 284486 NA 11 17 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPARA 22 46150521 46243756 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPARD 6 35342558 35428191 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPARG 3 12287368 12434356 FALSE 112 -1.67393875810166 10 12190597 12381389 0.397448435712946 0 0 0.397448435712946 0 0 190792 0 2 324 5 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPARGC1A 4 23755041 23904089 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPARGC1B 5 149730298 149855022 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 21 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPAT 4 56393362 56435615 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPBP 4 73987038 73988197 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPCDC 15 75023555 75117462 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPCS 1 42456117 42473385 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPDPF 20 63520724 63522206 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPDPFL 8 49054311 49076090 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPEF1 23 18675909 18827921 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 16 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPEF2 4 75859864 75902571 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPFIA1 11 70270700 70385312 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPFIA2 12 81257975 81759553 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 35 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPFIA3 19 49119389 49151026 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 32 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPFIA4 1 203026498 203078740 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 32 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPFIBP1 12 27523431 27695564 FALSE 395 1.05231732428215 116 26055418 27646129 0.397448435712946 10 NA 0.397448435712946 10 NA 1590711 NA 13 29 2 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPFIBP2 11 7513298 7657127 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 31 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPHLN1 12 42238447 42459715 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 22 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIA 7 44796680 44824564 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIAL4A 1 120889746 120890405 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIAL4C 1 149583865 149584464 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIAL4D 1 145241630 145242124 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIAL4G 1 148479824 148483679 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIB 15 64155812 64163205 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIC 5 123023250 123036741 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 5 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPID 4 158709134 158723396 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIE 1 39692182 39763914 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIF 10 79347469 79355337 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIG 2 169584340 169641406 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 16 5 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIH 1 42658425 42676758 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIL1 6 36854827 36875024 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIL2 22 21666009 21700015 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 20 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIL3 2 200870907 200889303 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIL4 6 149504733 149546038 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIL6 6 109390215 109441171 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 10 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIP5K1 15 43533462 43590253 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 9 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPIP5K2 5 103120149 103212799 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 33 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPL 16 4882507 4960741 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 34 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPM1A 14 60245752 60299087 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 9 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPM1B 2 44167969 44244384 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPM1D 17 60600183 60666280 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 22 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPM1E 17 58755869 58985176 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPM1F 22 21919420 21952837 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPM1G 2 27381194 27409687 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPM1H 12 62643982 62935037 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPM1J 1 112709994 112715477 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPM1K 4 88257620 88284769 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPM1L 3 160755602 161078907 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPM1M 3 52245793 52250597 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPM1N 19 45488777 45502510 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPME1 11 74171099 74254703 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPOX 1 161166410 161178013 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1CA 11 67398183 67421183 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1CB 2 28751640 28802940 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1CC 12 110719680 110742939 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R10 6 30600400 30618612 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 22 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R11 6 30066709 30070333 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 3 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R12A 12 79773563 79935460 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 27 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R12B 1 202348699 202592706 FALSE 37 0.422972367154532 103 202010393 202741677 0.397448435712946 5 NA 0.397448435712946 5 NA 731284 NA 9 29 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R12C 19 55090913 55117559 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 20 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R13B 14 103733195 103847590 FALSE 469 0.0970036495769966 82 103726795 103742802 0.298111653356898 4 NA 0.298111653356898 4 NA 16007 NA 2 21 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R13L 19 45379634 45406349 FALSE 661 0.715350247494231 111 45349921 45423906 0.397448435712946 7 NA 0.397448435712946 7 NA 73985 NA 5 15 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R14A 19 38251237 38256591 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R14B 11 64244480 64246941 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R14C 6 150143076 150250357 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R14D 15 40815445 40828709 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R15A 19 48872392 48876057 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 8 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R15B 1 204403387 204411791 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R16A 8 144477969 144502121 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R16B 20 38805705 38923024 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R17 7 31686715 31708455 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 4 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R18 6 30676389 30687895 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R1A 12 54575387 54588659 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R1B 17 39626740 39636626 FALSE 550 0.588438690170753 105 39461721 39864123 0.397448435712946 6 NA 0.397448435712946 6 NA 402402 NA 11 7 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R1C 2 181954241 182131398 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R2 3 195514425 195543386 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R21 2 48440598 48515391 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 23 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R26 9 135479079 135488893 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R27 17 81833492 81835050 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R2B 5 156850538 156852528 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R2C 23 42777368 42778247 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R32 11 61481120 61490931 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R35 7 100435282 100436565 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R36 14 64549902 64589380 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 12 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R37 19 45091396 45148077 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 14 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R3A 7 113876777 114075920 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R3B 8 9136255 9151574 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R3C 10 91628442 91633054 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R3D 20 59936668 59940297 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R3E 14 23295643 23302848 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R3F 23 49269843 49301461 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 11 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R3G 6 5084581 5089487 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R42 8 66964099 67056604 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R7 2 241149576 241183652 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 12 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R8 1 27830778 27851676 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R9A 7 94907202 95296415 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 28 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP1R9B 17 50133735 50150630 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 16 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2CA 5 134194334 134226142 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2CB 8 30774457 30814314 FALSE 263 -0.733220050878338 27 30753052 31640612 0.255173832388045 0 0 0.255173832388045 0 0 887560 0 6 7 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2R1A 19 52190039 52229533 TRUE 674 0.870469461319559 113 52170989 52229707 0.397448435712946 8 NA 0.397448435712946 8 NA 58718 NA 2 38 3 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2R1B 11 111726908 111766427 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2R2A 8 26291491 26372680 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2R2B 5 146581146 147084784 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2R2C 4 6320578 6563600 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 13 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2R2D 10 131900644 131959834 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2R3A 3 135965673 136147891 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 22 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2R3C 14 35085467 35122517 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 13 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2R5A 1 212285537 212361863 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2R5B 11 64917553 64934473 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2R5C 14 101761798 101927989 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2R5D 6 42984499 43012342 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP2R5E 14 63371357 63543374 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 14 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP3CA 4 101023409 101348278 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP3CB 10 73436428 73496024 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP3CC 8 22440819 22541142 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP3R1 2 68178857 68256237 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP3R2 9 101591615 101595021 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP4C 16 30075978 30085377 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP4R1 18 9546791 9615240 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 22 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP4R2 3 72996785 73069199 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP4R3A 14 91457611 91510554 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP4R3B 2 55547292 55618880 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 19 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP4R3C 23 27460211 27463341 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 10 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP4R4 14 94146128 94279735 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 26 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP5C 19 46346994 46392981 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 14 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP5D1 19 46480796 46601200 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP6C 9 125146573 125189939 TRUE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 23 7 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP6R1 19 55229780 55258995 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 22 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP6R2 22 50343304 50445090 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 24 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPP6R3 11 68460731 68615334 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPRC1 10 102132994 102150331 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 28 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPT1 1 40071461 40097727 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPT2 6 32153441 32163680 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPT2-EGFL8 6 32153845 32171978 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 22 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPTC7 12 110533245 110583320 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 7 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPWD1 5 65563236 65587549 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PPY 17 43940804 43942468 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PQBP1 23 48897912 48903143 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PQLC1 18 79902420 79951664 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PQLC2 1 19312326 19329300 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PQLC2L 3 157543246 157677749 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PQLC3 2 11155198 11178874 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 7 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAC1 17 48721719 48722522 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAC2 17 48723168 48724758 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 3 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRADC1 2 73228006 73233238 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAF2 23 49071156 49074071 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAG1 8 8317736 8386498 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 19 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAM1 19 8490056 8503112 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAME 22 22547701 22559361 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 9 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF1 1 12791397 12796628 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF10 1 12892896 12898270 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 5 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF11 1 12824605 12831410 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 8 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF12 1 12774841 12777906 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF14 1 13342034 13347134 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF15 1 13315581 13322598 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 2 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF17 1 13389632 13392629 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF18 1 13222705 13226106 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 3 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF19 1 13369067 13371900 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 3 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF2 1 12857086 12861909 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 8 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF20 1 13410450 13421328 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 3 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF25 1 13068677 13077884 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF33 1 13303539 13308907 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 8 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF4 1 12879224 12886201 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF5 1 13254212 13263314 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF6 1 12938472 12947580 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 4 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF7 1 12916610 12920482 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 4 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF8 1 13281035 13285174 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 3 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAMEF9 1 13172455 13179464 FALSE 12 -0.567110023478264 33 12746528 13418237 0.303590043810077 1 0 0.303590043810077 1 0 671709 1 27 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRAP1 10 133347146 133352683 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRB1 12 11351823 11395566 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 13 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRB2 12 11391540 11501041 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 7 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRB3 12 11265924 11269805 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRB4 12 11307083 11310435 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 5 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRC1 15 90966038 90995629 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRCC 1 156750610 156800817 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRCD 17 76527586 76553578 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRCP 11 82823502 82970584 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 24 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM1 6 106086320 106109939 TRUE 206 1.07074954420563 116 106069853 106186694 0.397448435712946 10 NA 0.397448435712946 10 NA 116841 NA 2 28 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM10 11 129899706 130002835 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM11 11 45095806 45235110 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM12 9 130664594 130682981 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 7 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM13 6 99606730 99615578 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM14 8 70051651 70071693 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 10 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM15 21 41798225 41879482 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 36 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM16 1 3069168 3438621 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 25 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM2 1 13700198 13825079 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 27 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM4 12 107732866 107761272 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 16 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM5 4 120684919 120922870 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 16 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM6 5 123089121 123194266 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM7 16 90056566 90092072 FALSE 535 0.126990432456591 86 89733549 90075852 0.360033220093454 4 NA 0.360033220093454 4 NA 342303 NA 12 12 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM8 4 80183879 80204329 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDM9 5 23443586 23528597 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDX1 1 45511036 45523047 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDX2 19 12796820 12801859 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDX3 10 119167703 119178833 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDX4 23 23664262 23686399 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDX5 11 64318088 64321811 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRDX6 1 173477266 173488807 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PREB 2 27130756 27134675 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRELID1 5 177303774 177306959 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRELID2 5 145471799 145835369 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRELID3A 18 12407896 12432238 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRELID3B 20 59033145 59042909 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRELP 1 203475828 203491352 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PREP 6 105277565 105403084 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PREPL 2 44316281 44361862 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PREX1 20 48624252 48827883 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 44 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PREX2 8 67952118 68237030 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 65 21 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRF1 10 70597348 70602775 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRG2 11 57386794 57390657 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRG3 11 57376769 57381150 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRG4 1 186296279 186314562 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 24 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRH1 12 10824960 11171608 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 56 14 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRH1-PRR4 12 10845849 11171600 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 52 14 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRH2 12 10929236 10932341 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRICKLE1 12 42456757 42590355 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRICKLE2 3 64092242 64445476 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRICKLE3 23 49175264 49186528 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 13 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRICKLE4 6 41780762 41787372 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRIM1 12 56731596 56752373 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRIM2 6 57314805 57646849 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRIMA1 14 93718298 93788481 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRIMPOL 4 184649613 184694963 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKAA1 5 40759379 40798374 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKAA2 1 56645322 56715335 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKAB1 12 119667753 119681630 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKAB2 1 147155106 147172550 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKACA 19 14091688 14118084 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 12 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKACB 1 84078062 84238498 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKACG 9 69012529 69014113 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKAG1 12 49002274 49018825 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKAG2 7 151556111 151877125 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 21 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKAG3 2 218822383 218832086 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKAR1A 17 68511780 68551319 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 45 8 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKAR1B 7 549197 727650 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKAR2A 3 48744597 48847846 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKAR2B 7 107044649 107161811 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKCA 17 66302636 66810743 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKCB 16 23835946 24220611 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 18 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKCD 3 53156009 53192717 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKCE 2 45651345 46187990 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 16 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKCG 19 53879190 53907652 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 19 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKCH 14 61187559 61550976 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 20 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKCI 3 170222365 170305981 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 28 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKCQ 10 6427143 6580301 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKCSH 19 11435288 11450968 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKCZ 1 2050470 2185395 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 19 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKD1 14 29576479 30191898 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 23 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKD2 19 46674275 46717127 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 22 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKD3 2 37250502 37324808 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 20 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKDC 8 47773108 47960183 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 92 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKG1 10 50990891 52298350 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 28 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKG2 4 81087370 81215117 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKN 6 161347420 162727771 TRUE 227 0.619362333398079 107 160991922 163578580 0.397448435712946 7 NA 0.397448435712946 7 NA 2586658 NA 5 39 1 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKRA 2 178431414 178451512 FALSE 89 -0.503631193706026 35 177420363 178547579 0.252021069663427 1 0 0.252021069663427 1 0 1127216 1 11 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKRIP1 7 102363872 102426676 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRKX 23 3604370 3713608 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 9 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRL 6 22287244 22297501 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRLH 2 237566574 237567175 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 2 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRLHR 10 118589989 118595699 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRLR 5 35048756 35230589 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRM1 16 11280836 11281350 FALSE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 2 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRM2 16 11275639 11276480 FALSE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 3 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRM3 16 11273218 11273641 FALSE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 2 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRMT1 19 49675786 49689029 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRMT2 21 46635167 46665124 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRMT3 11 20387530 20509294 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRMT5 14 22920511 22929585 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 17 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRMT6 1 107056679 107067636 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRMT7 16 68310974 68358563 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRMT8 12 3381349 3593973 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRMT9 4 147637785 147684230 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRND 20 4721910 4728460 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRNP 20 4686236 4701590 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROB1 5 139390592 139395713 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROC 2 127418427 127429246 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 10 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROCA1 17 28703197 28711854 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROCR 20 35172073 35216240 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRODH 22 18912777 18936553 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRODH2 19 35799988 35813299 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROK1 1 110451200 110457354 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROK2 3 71771656 71785206 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROKR1 2 68643589 68658247 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 5 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROKR2 20 5302040 5314369 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROM1 4 15963076 16084378 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 28 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROM2 2 95274453 95291308 FALSE 72 -0.297431743288301 44 95106429 96195026 0.213873728132233 2 0 0.213873728132233 2 0 1088597 2 15 24 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROP1 5 177992235 177996242 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROS1 3 93873033 93980003 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROSER1 13 39009866 39038076 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROSER2 10 11823339 11872277 FALSE 314 0.0797787605968275 82 10796933 12825599 0.298111653356898 4 NA 0.298111653356898 4 NA 2028666 NA 10 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROSER3 19 35758143 35771028 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROX1 1 213983181 214041502 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROX2 14 74852871 74871940 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 8 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PROZ 13 113158654 113172383 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPF18 10 13586927 13630868 FALSE 315 0.228244116357697 94 12828838 14820149 0.39968910724052 4 NA 0.39968910724052 4 NA 1991311 NA 13 10 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPF19 11 60890730 60906588 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPF3 1 150321476 150353195 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPF31 19 54115410 54131719 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 13 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPF38A 1 52404564 52420839 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPF38B 1 108692323 108701803 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPF39 14 45084099 45116282 FALSE 451 -0.0664108785456086 67 44505506 45130739 0.31995059840763 3 NA 0.31995059840763 3 NA 625233 NA 6 16 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPF4 9 113275343 113292905 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPF40A 2 152651593 152717997 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 26 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPF40B 12 49568218 49644666 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 40 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPF4B 6 4021267 4064983 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 19 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPF6 20 63981135 64033100 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPF8 17 1650629 1684882 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 45 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPH 12 49293252 49298686 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPH2 6 42696600 42722574 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPS1 23 107628424 107651026 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPS1L1 7 18026774 18027863 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 4 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPS2 23 12791355 12824222 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPSAP1 17 76309486 76384521 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRPSAP2 17 18840085 18931287 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 12 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR11 17 59155499 59204705 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 10 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR12 19 49591643 49626439 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 30 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR13 12 53441605 53446645 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR14 16 30650717 30656440 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR14L 22 31676256 31750140 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR15 7 29563811 29567295 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 2 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR15L 17 47951967 47957878 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR16 5 120464278 120687332 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR18 6 166305300 166308448 FALSE 228 -0.0936034159017556 66 165280135 167136462 0.330876988437597 3 0 0.330876988437597 3 0 1856327 3 12 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR19 19 42302098 42310821 FALSE 655 -0.303862148002883 46 42297355 42428877 NA 2 NA NA 2 NA 131522 NA 7 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR22 19 5782960 5784765 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR23A 3 139005468 139006268 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 4 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR23B 3 139019031 139020926 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR23C 3 139042102 139044892 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR23D1 8 7539628 7542450 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 1 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR26 10 649948 669581 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR27 4 70133616 70176799 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR29 17 63998351 64004304 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR3 6 30556886 30563723 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR30 2 27136848 27139410 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR32 23 126819764 126821786 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR34 22 46049478 46054144 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR35 16 560422 565528 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 8 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR36 19 7868719 7874379 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 16 5 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR4 12 10845849 10849475 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR5 22 44668547 44737681 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR5-ARHGAP8 22 44702233 44862706 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 22 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR5L 11 36296288 36465204 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR7 5 177446445 177456286 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRR9 1 153217584 153219317 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRRC1 5 127517609 127555089 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRRC2A 6 31620720 31637771 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 41 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRRC2B 9 131373636 131500197 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 42 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRRC2C 1 171485551 171593511 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 48 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRRG1 23 37349275 37457295 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRRG2 19 49580646 49591015 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRRG3 23 151695124 151705924 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRRG4 11 32829943 32858123 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRRT1 6 32148359 32153083 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRRT2 16 29811382 29815892 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRRT3 3 9945542 9952394 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 13 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRRT4 7 128350325 128361685 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRRX1 1 170662728 170739419 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRRX2 9 129665641 129722674 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 4 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS1 7 142749468 142753076 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 7 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS12 4 118280038 118353003 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 17 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS16 6 27247701 27256624 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 13 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS2 7 142760398 142774564 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 8 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS21 16 2817180 2826304 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS22 16 2852727 2858170 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 8 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS23 11 86791059 86952910 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS27 16 2712418 2720551 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS3 9 33750466 33799231 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 9 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS33 16 2783953 2787948 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS35 6 83512538 83525704 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS36 16 31138925 31150094 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS37 7 141836286 141841487 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS38 1 227815693 227846470 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS41 16 2798485 2805302 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS42 3 46829542 46834095 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS45 3 46742092 46744755 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS48 4 151277171 151291453 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS50 3 46712115 46812574 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 19 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS51 8 10482878 10547585 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 7 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS53 16 31083425 31089628 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS54 16 58279997 58295047 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS55 8 10525546 10554166 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 8 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS56 2 232520463 232525716 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS57 19 685546 695498 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS58 7 142252143 142258058 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRSS8 16 31131433 31135762 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRTFDC1 10 24848607 24952604 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRTG 15 55611546 55743090 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRTN3 19 840960 848175 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRUNE1 1 151008420 151035713 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRUNE2 9 76611376 76906087 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 50 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRX 19 40393768 40413366 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 18 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRXL2A 10 80407829 80437115 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRXL2B 1 2586491 2591469 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PRXL2C 9 96639577 96655303 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSAP 10 71816298 71851375 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSAPL1 4 7430294 7434973 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSAT1 9 78297143 78330093 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 9 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSCA 8 142670308 142682724 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 3 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSD 10 102402617 102421539 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSD2 5 139795821 139844466 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 18 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSD3 8 18527301 19084730 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 22 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSD4 2 113157325 113209396 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 23 3 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSEN1 14 73136418 73223691 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 11 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSEN2 1 226870184 226896105 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSENEN 19 35745114 35747519 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSG1 19 42866464 42879822 FALSE 656 -1.19927952331901 16 42433040 43267802 0.39968910724052 0 0 0.39968910724052 0 0 834762 0 13 11 3 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSG11 19 43007656 43026512 FALSE 656 -1.19927952331901 16 42433040 43267802 0.39968910724052 0 0 0.39968910724052 0 0 834762 0 13 8 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSG2 19 43064211 43083045 FALSE 656 -1.19927952331901 16 42433040 43267802 0.39968910724052 0 0 0.39968910724052 0 0 834762 0 13 8 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSG3 19 42721638 42740569 FALSE 656 -1.19927952331901 16 42433040 43267802 0.39968910724052 0 0 0.39968910724052 0 0 834762 0 13 9 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSG4 19 43192702 43207299 FALSE 656 -1.19927952331901 16 42433040 43267802 0.39968910724052 0 0 0.39968910724052 0 0 834762 0 13 10 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSG5 19 43166256 43186536 FALSE 656 -1.19927952331901 16 42433040 43267802 0.39968910724052 0 0 0.39968910724052 0 0 834762 0 13 7 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSG6 19 42902079 42919563 FALSE 656 -1.19927952331901 16 42433040 43267802 0.39968910724052 0 0 0.39968910724052 0 0 834762 0 13 10 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSG7 19 42924132 42937178 FALSE 656 -1.19927952331901 16 42433040 43267802 0.39968910724052 0 0 0.39968910724052 0 0 834762 0 13 7 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSG8 19 42752686 42855691 FALSE 656 -1.19927952331901 16 42433040 43267802 0.39968910724052 0 0 0.39968910724052 0 0 834762 0 13 10 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSG9 19 43211791 43269530 FALSE 656 -1.19927952331901 16 42433040 43267802 0.39968910724052 0 0 0.39968910724052 0 0 834762 0 13 9 0 TRUE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSIP1 9 15464066 15511019 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSKH1 16 67893272 67929678 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSKH2 8 86048373 86088621 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMA1 11 14504874 14643635 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMA2 7 42916857 42932223 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMA3 14 58244831 58272012 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 11 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMA4 15 78540405 78552419 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMA5 1 109399031 109426427 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMA6 14 35278633 35317493 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 8 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMA7 20 62136735 62143440 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMA8 18 26133852 26193355 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMB1 6 170535117 170553341 FALSE 231 -0.348813635967544 46 170286311 170584601 NA 2 NA NA 2 NA 298290 NA 5 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMB10 16 67934502 67937087 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMB11 14 23042167 23044276 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMB2 1 35599544 35641844 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMB3 17 38752736 38764231 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMB4 1 151399534 151401944 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMB5 14 23016543 23035230 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMB6 17 4796144 4798503 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMB7 9 124353466 124415444 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMB8 6 32840717 32844703 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMB9 6 32844136 32859585 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 22 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMC1 14 90256495 90275429 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMC2 7 103344254 103369395 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMC3 11 47418769 47426473 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMC3IP 17 42572315 42577831 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMC4 19 39971005 39981441 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMC5 17 63827152 63832026 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMC6 14 52707172 52728587 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 13 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMD1 2 231056864 231172827 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 32 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMD10 23 108084207 108091618 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMD11 17 32444261 32483318 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMD12 17 67337916 67366627 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMD13 11 236546 252984 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMD14 2 161308038 161411717 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMD2 3 184298709 184309054 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 22 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMD3 17 39980797 39997960 FALSE 551 -0.178633749129299 62 39868328 40193677 0.235629703240478 3 NA 0.235629703240478 3 NA 325349 NA 13 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMD4 1 151254703 151267479 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMD5 9 120815496 120842984 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMD6 3 64010549 64024010 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMD7 16 74296775 74306288 FALSE 528 -0.523993511899561 34 73143840 74409864 0.312402751065481 1 0 0.312402751065481 1 0 1266024 1 4 8 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMD8 19 38374536 38383824 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 8 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMD9 12 121888731 121918297 FALSE 423 -0.315985647593647 46 121839804 122003686 NA 2 NA NA 2 NA 163882 NA 4 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSME1 14 24136158 24138967 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSME2 14 24143362 24147570 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 10 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSME3 17 42824385 42843758 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSME4 2 53864067 53970840 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 48 8 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMF1 20 1113263 1189415 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMG1 21 39174769 39183851 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 7 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMG2 18 12658043 12725740 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 21 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMG3 7 1567330 1571005 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSMG4 6 3231403 3303373 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSORS1C1 6 31114750 31140092 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 15 5 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSORS1C2 6 31137536 31139350 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSPC1 13 19674752 19783019 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSPH 7 56011051 56051604 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSPN 19 6375148 6379058 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSRC1 1 109279556 109283186 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSTK 10 122954381 122997513 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 13 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSTPIP1 15 76993359 77037332 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PSTPIP2 18 45983536 46072272 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 14 4 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTAFR 1 28147166 28193936 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTAR1 9 69709522 69759959 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTBP1 19 797075 812327 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 15 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTBP2 1 96721665 96823738 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTBP3 9 112217716 112333667 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 17 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTCD1 7 99416739 99466163 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTCD2 5 72320367 72368395 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTCD3 2 86106182 86142157 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 24 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTCH1 9 95442980 95517057 TRUE 298 0.609408307265446 107 95443161 95876006 0.397448435712946 7 NA 0.397448435712946 7 NA 432845 NA 2 61 1 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTCH2 1 44819844 44843063 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 27 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTCHD1 23 23334016 23404372 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 12 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTCHD4 6 47878028 48068689 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTCRA 6 42915989 42925835 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTDSS1 8 96261715 96336995 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTDSS2 11 448268 491399 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 13 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTEN 10 87863113 87971930 TRUE 330 1.02149672103932 115 87862670 87977016 0.397448435712946 10 NA 0.397448435712946 10 NA 114346 NA 2 52 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTER 10 16436943 16513745 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTF1A 10 23192327 23194252 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGDR 14 52267713 52276724 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGDR2 11 60850940 60855971 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGDS 9 136975092 136981742 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGER1 19 14472466 14475362 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGER2 14 52314305 52328606 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 5 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGER3 1 70852353 71047808 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGER4 5 40679498 40693735 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGES 9 129738331 129753047 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 4 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGES2 9 128120693 128128462 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGES3 12 56663341 56688408 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGES3L 17 42968088 42980433 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGES3L-AARSD1 17 42950526 42980528 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 19 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGFR 1 78303884 78539749 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGFRN 1 116910057 116990358 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGIR 19 46620468 46625118 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGIS 20 49503874 49568146 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGR1 9 111549722 111599893 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGR2 14 73851844 73886827 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 9 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGS1 9 122370530 122395703 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTGS2 1 186671791 186680427 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTH 11 13492055 13496181 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTH1R 3 46877746 46903799 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 15 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTH2 19 49422414 49423441 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTH2R 2 208359714 208854503 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 14 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTHLH 12 27958084 27972705 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTK2 8 140657900 141002216 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 36 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTK2B 8 27311482 27459391 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 30 2 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTK6 20 63528001 63537370 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTK7 6 43076268 43161719 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTMA 2 231706895 231713541 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTMS 12 6765516 6770952 FALSE 381 -0.0962006740122522 67 6638345 6823870 0.31995059840763 3 NA 0.31995059840763 3 NA 185525 NA 10 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTN 7 137227341 137343865 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTOV1 19 49850735 49860744 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTP4A1 6 63521746 63583377 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTP4A2 1 31906421 31944856 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTP4A3 8 141391993 141432454 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPA 9 129110950 129148946 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 2 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPDC1 9 94030794 94109856 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPMT1 11 47565430 47573461 FALSE 346 -0.207050878279221 57 47484529 47631121 0.158317833115363 3 NA 0.158317833115363 3 NA 146592 NA 7 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN1 20 50510321 50585241 TRUE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 31 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN11 12 112418351 112509913 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 33 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN12 7 77537275 77640071 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 21 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN13 4 86594315 86815171 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 55 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN14 1 214348696 214552449 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN18 2 130356007 130375409 FALSE 82 -0.261392512927958 50 127719285 130373216 1 2 1 1 2 1 2653931 1 15 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN2 18 12785478 12929643 TRUE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN20 10 46911396 47002488 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN21 14 88465778 88554733 FALSE 460 0.12444651269489 86 81145505 88469683 0.360033220093454 4 NA 0.360033220093454 4 NA 7324178 NA 10 24 4 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN22 1 113813811 113871759 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN23 3 47381011 47413441 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 31 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN3 9 109375466 109498313 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 26 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN4 2 119759631 119983818 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 26 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN5 11 18727928 18792721 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN6 12 6946468 6961316 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 17 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN7 1 202147013 202161588 FALSE 37 0.422972367154532 103 202010393 202741677 0.397448435712946 5 NA 0.397448435712946 5 NA 731284 NA 9 12 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPN9 15 75463251 75579289 FALSE 492 -0.226543951235523 57 75468765 76202218 0.158317833115363 3 NA 0.158317833115363 3 NA 733453 NA 10 14 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRA 20 2864184 3039076 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 30 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRB 12 70515866 70637440 FALSE 415 0.0296903115421813 74 69585546 71157651 0.246063395031215 4 2 0.246063395031215 4 2 1572105 2 11 53 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRC 1 198638457 198757476 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 34 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRCAP 11 67435510 67438067 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRD 9 8314246 10612723 TRUE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 81 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRE 10 127907061 128085855 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 22 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRF 1 43525187 43623666 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 42 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRG 3 61561569 62297613 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRH 19 55181248 55209506 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 27 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRJ 11 47980558 48170841 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 32 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRK 6 127968779 128520674 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 39 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRM 18 7566782 8406861 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 37 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRN 2 219289623 219309648 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 26 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRN2 7 157539056 158587788 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 27 4 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRO 12 15322397 15597399 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 28 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRQ 12 80402178 80680271 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 53 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRR 12 70638073 70920843 FALSE 415 0.0296903115421813 74 69585546 71157651 0.246063395031215 4 2 0.246063395031215 4 2 1572105 2 11 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRS 19 5158495 5340803 TRUE 603 0.73978297168897 111 5194768 5290955 0.397448435712946 7 NA 0.397448435712946 7 NA 96187 NA 1 56 3 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRT 20 42072752 43189970 TRUE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 78 15 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRU 1 29236516 29326813 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 39 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTPRZ1 7 121873089 122062036 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 43 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTRH1 9 127690348 127724873 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 30 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTRH2 17 59674636 59707626 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 22 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTRHD1 2 24789734 24793382 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 2 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTS 11 112226365 112269955 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTTG1 5 160421822 160428744 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTTG1IP 21 44849585 44873903 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTTG2 4 37960435 37961125 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTX3 3 157436789 157443628 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PTX4 16 1485886 1488981 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PUDP 23 7048920 7148190 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PUF60 8 143816344 143829859 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 13 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PUM1 1 30931506 31065991 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PUM2 2 20248691 20352234 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 23 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PUM3 9 2720469 2844241 FALSE 281 -0.150462187040168 62 711236 2838509 0.235629703240478 3 NA 0.235629703240478 3 NA 2127273 NA 8 20 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PURA 5 140107777 140125619 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PURB 7 44876293 44885361 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PURG 8 30995802 31033715 FALSE 263 -0.733220050878338 27 30753052 31640612 0.255173832388045 0 0 0.255173832388045 0 0 887560 0 6 5 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PUS1 12 131929200 131945896 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PUS10 2 60940222 61018259 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PUS3 11 125893485 125903221 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 12 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PUS7 7 105439661 105522267 FALSE 247 -0.18197294596649 62 105388711 106112210 0.235629703240478 3 NA 0.235629703240478 3 NA 723499 NA 7 17 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PUS7L 12 43718993 43758817 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PUSL1 1 1308567 1311677 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 8 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PVALB 22 36800684 36819479 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PVALEF 17 81165507 81183164 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PVR 19 44643798 44663583 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PVRIG 7 100218241 100221490 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PWP1 12 107685732 107713167 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PWP2 21 44107290 44131181 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PWWP2A 5 160061801 160119423 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PWWP2B 10 132397168 132417863 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PXDC1 6 3722614 3752026 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PXDN 2 1631887 1744852 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 30 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PXDNL 8 51319578 51809445 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 29 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PXK 3 58332880 58426126 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 21 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PXMP2 12 132687606 132704991 FALSE 427 0.237104219097234 97 132687678 132861490 0.39968910724052 4 NA 0.39968910724052 4 NA 173812 NA 5 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PXMP4 20 33702754 33720319 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PXN 12 120210439 120265771 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PXT1 6 36390551 36442889 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 3 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PXYLP1 3 141228726 141367753 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYCARD 16 31201485 31203450 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYCR1 17 81932384 81942412 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYCR2 1 225919877 225924340 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYCR3 8 143603913 143609773 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYDC1 16 31215962 31217359 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYDC2 3 191461163 191461456 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 2 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYGB 20 25248069 25298014 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 22 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYGL 14 50857891 50944736 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 34 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYGM 11 64746389 64760297 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYGO1 15 55538890 55588947 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYGO2 1 154957026 154963853 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYHIN1 1 158930796 158977054 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYM1 12 55901413 55932618 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYROXD1 12 21437615 21471252 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 21 8 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYROXD2 10 98383565 98415184 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYURF 4 88520985 88523813 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 3 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PYY 17 43952738 44004469 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 PZP 12 9148840 9208370 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 36 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QARS 3 49095932 49105135 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 21 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QDPR 4 17460261 17512234 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QKI 6 163414000 163578596 FALSE 227 0.619362333398079 107 160991922 163578580 0.397448435712946 7 NA 0.397448435712946 7 NA 2586658 NA 5 61 7 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QPCT 2 37342827 37373322 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QPCTL 19 45692483 45703989 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QPRT 16 29679008 29698699 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QRFP 9 130892702 130896812 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QRFPR 4 121329312 121381059 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QRICH1 3 49029707 49094363 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QRICH2 17 76274049 76307998 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 32 11 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QRSL1 6 106629578 106668417 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 11 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QSER1 11 32892820 32993316 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 27 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QSOX1 1 180154834 180204030 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QSOX2 9 136206333 136245841 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 15 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QTRT1 19 10701430 10713437 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 QTRT2 3 114005833 114088422 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 R3HCC1 8 23270120 23296279 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 R3HCC1L 10 98134624 98244897 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 R3HDM1 2 135531455 135725270 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 28 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 R3HDM2 12 57253762 57431005 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 26 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 R3HDM4 19 896503 913245 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 8 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 R3HDML 20 44336986 44351235 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB10 2 26034107 26137454 FALSE 56 0.00177645496183448 77 25244133 26472685 0.252310779181821 4 NA 0.252310779181821 4 NA 1228552 NA 12 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB11A 15 65726054 65891991 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB11B 19 8389981 8404434 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 7 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB11FIP1 8 37858618 37899467 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 18 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB11FIP2 10 118004916 118046603 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB11FIP3 16 425619 523011 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 19 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB11FIP4 17 31391624 31538217 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB11FIP5 2 73073382 73156721 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB12 18 8609437 8639382 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB13 1 153981617 153986358 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB14 9 121178137 121223014 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 7 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB15 14 64945814 64973226 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB17 2 237574322 237601614 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 5 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB18 10 27504174 27542237 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB19 7 140404043 140426250 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB1A 2 65070696 65130331 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB1B 11 66268533 66277492 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB20 13 110523066 110561733 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB21 12 71754874 71800285 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB22A 20 58309696 58367507 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB23 6 57186992 57222314 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB24 5 177301198 177303744 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB25 1 156061160 156070514 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB26 16 2140803 2154165 FALSE 509 -0.0801213023027545 67 2089943 2153370 0.31995059840763 3 NA 0.31995059840763 3 NA 63427 NA 2 7 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB27A 15 55202966 55319113 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB27B 18 54717860 54895516 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB28 4 13361354 13484365 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB29 1 205767986 205775460 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB2A 8 60516857 60623627 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB2B 14 21459020 21476973 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB30 11 82973133 83071923 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB31 18 9708165 9862551 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB32 6 146543693 146554965 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB33A 23 130171649 130184870 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB33B 4 139453232 139476609 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB34 17 28714281 28718429 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB35 12 120095095 120117502 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 14 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB36 22 23145326 23164350 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 12 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB37 17 74670578 74747335 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 22 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB38 11 88113242 88175467 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB39A 11 107928503 107963482 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB39B 23 155258241 155264589 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB3A 19 18196784 18204074 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB3B 1 51907956 51990764 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB3C 5 58582221 58859394 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB3D 19 11322046 11346270 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB3GAP1 2 135052265 135176394 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB3GAP2 1 220148293 220272454 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 37 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB3IL1 11 61897301 61920269 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB3IP 12 69738681 69823204 FALSE 415 0.0296903115421813 74 69585546 71157651 0.246063395031215 4 2 0.246063395031215 4 2 1572105 2 11 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB40A 23 103499130 103519489 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB40AL 23 102937272 102938300 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB40B 17 82654973 82698728 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB40C 16 589357 629272 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB41 23 70282093 70285002 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 8 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB42 1 28592200 28595443 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB43 3 129087569 129122801 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB44 6 36697810 36733183 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 18 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB4A 1 229271062 229305894 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB4B 19 40778216 40796938 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB4B-EGLN2 19 40778242 40808418 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 15 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB5A 3 19947079 19985175 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB5B 12 55973913 55996683 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB5C 17 42124976 42155044 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB5IF 20 36605734 36612557 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB6A 11 73675638 73761137 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB6B 3 133824239 133895836 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 8 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB6C 2 129979664 129982738 FALSE 82 -0.261392512927958 50 127719285 130373216 1 2 1 1 2 1 2653931 1 15 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB6D 2 131361111 131364142 FALSE 84 -0.292186070013859 45 130656603 132790182 1 2 1 1 2 1 2133579 1 16 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB7A 3 128726122 128814796 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB8A 19 16111629 16134234 FALSE 627 -0.490607499224798 35 15728649 16234395 0.252021069663427 1 0 0.252021069663427 1 0 505746 1 13 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB8B 15 63189469 63267782 FALSE 487 0.296385928010631 99 61991730 63677860 0.361681390833996 5 NA 0.361681390833996 5 NA 1686130 NA 13 8 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB9A 23 13689125 13710506 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAB9B 23 103822322 103832228 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RABAC1 19 41956681 41959390 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 6 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RABEP1 17 5282265 5385812 FALSE 537 -0.704833888728741 29 5091667 5391656 0.39968910724052 1 0 0.39968910724052 1 0 299989 1 7 20 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RABEP2 16 28904421 28936526 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RABEPK 9 125200542 125234158 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RABGAP1 9 122940833 123104866 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 30 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RABGAP1L 1 174159410 174995308 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 34 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RABGEF1 7 66682164 66811464 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RABGGTA 14 24265538 24271739 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 15 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RABGGTB 1 75786197 75795079 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RABIF 1 202878957 202889135 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RABL2A 2 113627229 113643396 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 9 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RABL2B 22 50767501 50783663 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RABL3 3 120686681 120742993 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RABL6 9 136807943 136841187 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 19 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAC1 7 6374523 6403977 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAC2 22 37225261 37244448 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAC3 17 82031624 82034204 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RACGAP1 12 49976923 50033136 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RACK1 5 181236909 181248096 FALSE 183 -0.449406845966543 39 180792977 181260799 NA 2 NA NA 2 NA 467822 NA 11 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD1 5 34905264 34918989 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 8 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD17 5 69369293 69414801 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD18 3 8775402 8963773 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 14 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD21 8 116845935 116874866 TRUE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 29 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD21L1 20 1226056 1296421 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD23A 19 12945855 12953642 FALSE 620 0.246971120530574 97 12876151 13116391 0.39968910724052 4 NA 0.39968910724052 4 NA 240240 NA 12 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD23B 9 107283137 107332194 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 12 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD50 5 132556019 132646344 TRUE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 56 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD51 15 40694774 40732339 TRUE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 22 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD51AP1 12 4538798 4560048 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD51AP2 2 17510584 17518439 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 15 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD51B 14 67819779 68730218 TRUE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 39 6 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD51C 17 58692573 58735611 TRUE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 21 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD51D 17 35092208 35121522 TRUE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 42 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD51L3-RFFL 17 35011349 35121493 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 50 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD52 12 912077 990053 FALSE 376 0.607695826332189 107 896308 1028045 0.397448435712946 6 NA 0.397448435712946 6 NA 131737 NA 3 21 3 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD54B 8 94371960 94475109 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 21 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD54L 1 46247688 46278473 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 27 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD54L2 3 51541144 51668667 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 26 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD9A 11 67317871 67398410 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAD9B 12 110501655 110532086 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RADIL 7 4797055 4883719 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 29 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAE1 20 57351010 57379211 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAET1E 6 149883375 149898102 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 7 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAET1G 6 149916878 149923121 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAET1L 6 150018334 150025532 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 5 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAF1 3 12583601 12664226 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 83 18 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAG1 11 36510709 36593156 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAG2 11 36575574 36598279 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAI1 17 17681473 17811453 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 24 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAI14 5 34656237 34832627 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 24 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAI2 23 17800049 17861337 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RALA 7 39623483 39708124 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RALB 2 120240064 120294713 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RALBP1 18 9475009 9538116 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RALGAPA1 14 35538352 35809304 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 53 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RALGAPA2 20 20389552 20712488 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 42 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RALGAPB 20 38472816 38578861 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RALGDS 9 133097720 133149334 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 24 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RALGPS1 9 126914774 127223166 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 29 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RALGPS2 1 178725147 178921841 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RALY 20 33993646 34108308 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RALYL 8 84182787 84921844 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAMAC 15 82986207 82991057 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAMP1 2 237858893 237912114 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 4 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAMP2 17 42758447 42763041 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAMP3 7 45157791 45186302 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAN 12 130871879 130877678 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RANBP1 22 20115938 20127357 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RANBP10 16 67723066 67806652 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RANBP17 5 170861870 171300015 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 28 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RANBP2 2 108719481 108785811 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 60 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RANBP3 19 5916139 5978142 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RANBP3L 5 36248434 36302114 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RANBP6 9 6011043 6015625 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RANBP9 6 13621498 13711564 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 16 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RANGAP1 22 41245611 41286251 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RANGRF 17 8288497 8290092 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAP1A 1 111542218 111716691 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAP1B 12 68610839 68671901 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAP1GAP 1 21596215 21669363 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 27 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAP1GAP2 17 2755705 3037739 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 25 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAP1GDS1 4 98261384 98443861 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAP2A 13 97434222 97469128 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAP2B 3 153162270 153170620 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAP2C 23 132203024 132219480 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAPGEF1 9 131576770 131740074 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 30 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAPGEF2 4 159103013 159360174 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 37 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAPGEF3 12 47734367 47771040 FALSE 401 0.570076889856971 105 47720770 47968206 0.397448435712946 6 NA 0.397448435712946 6 NA 247436 NA 6 29 2 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAPGEF4 2 172735274 173052893 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 32 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAPGEF5 7 22118238 22357144 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 23 3 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAPGEF6 5 131423921 131635236 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 37 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAPGEFL1 17 40177010 40195656 FALSE 551 -0.178633749129299 62 39868328 40193677 0.235629703240478 3 NA 0.235629703240478 3 NA 325349 NA 13 18 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAPH1 2 203394345 203535410 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAPSN 11 47437757 47449178 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RARA 17 40309192 40357643 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 69 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RARB 3 25174332 25597932 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RARG 12 53210567 53232980 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RARRES1 3 158696892 158732696 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RARRES2 7 150338317 150341674 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RARRES3 11 63536809 63546462 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RARS 5 168486445 168519299 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RARS2 6 87514378 87590003 FALSE 201 -0.221189436484543 57 87265553 88929289 0.158317833115363 3 NA 0.158317833115363 3 NA 1663736 NA 12 20 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASA1 5 87267888 87391931 TRUE 171 0.215918464504023 94 84137275 90525167 0.39968910724052 4 NA 0.39968910724052 4 NA 6387892 NA 10 45 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASA2 3 141487047 141615342 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 26 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASA3 13 113977783 114132611 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASA4 7 102573807 102616757 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASA4B 7 102482445 102517781 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASAL1 12 113098819 113136239 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASAL2 1 178094141 178484147 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASAL3 19 15451624 15464571 FALSE 626 0.131420245867563 86 15354999 15728497 0.360033220093454 4 NA 0.360033220093454 4 NA 373498 NA 10 21 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASD1 17 17494437 17496395 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASD2 22 35540868 35554001 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASEF 9 82979585 83063177 FALSE 293 -0.328784635523128 44 81990823 84670815 0.213873728132233 2 0 0.213873728132233 2 0 2679992 2 12 18 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASGEF1A 10 43194535 43266919 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 15 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASGEF1B 4 81426393 82044244 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASGEF1C 5 180100791 180209153 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 14 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASGRF1 15 78959947 79090773 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASGRF2 5 80960672 81230156 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 29 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASGRP1 15 38488103 38565575 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 19 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASGRP2 11 64726911 64745456 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASGRP3 2 33436324 33564750 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 18 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASGRP4 19 38409051 38426305 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 18 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASIP1 19 48720587 48740721 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASL10A 22 29312933 29319679 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASL10B 17 35731649 35743521 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASL11A 13 27270327 27273690 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASL11B 4 52862290 52866835 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASL12 15 65053337 65076690 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASSF1 3 50329782 50340980 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASSF10 11 13009577 13012106 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASSF2 20 4780023 4823645 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASSF3 12 64507001 64697567 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASSF4 10 44959407 44995891 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASSF5 1 206507530 206589448 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASSF6 4 73571550 73620631 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 12 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASSF7 11 560404 564021 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASSF8 12 25959029 26079892 FALSE 395 1.05231732428215 116 26055418 27646129 0.397448435712946 10 NA 0.397448435712946 10 NA 1590711 NA 13 8 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RASSF9 12 85800697 85836570 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAVER1 19 10316212 10333640 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAVER2 1 64745095 64833232 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAX 18 59267035 59274086 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RAX2 19 3769089 3772221 FALSE 598 -0.201030278929954 57 3651966 3942109 0.158317833115363 3 NA 0.158317833115363 3 NA 290143 NA 9 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RB1 13 48303726 48599436 TRUE 434 0.661158851956757 108 48261213 48511837 0.397448435712946 7 NA 0.397448435712946 7 NA 250624 NA 4 65 1 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RB1CC1 8 52622456 52745843 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 31 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBAK 7 5045821 5069488 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBAK-RBAKDN 7 4983718 5073221 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBBP4 1 32651142 32686211 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBBP5 1 205086142 205122015 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBBP6 16 24537693 24572863 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 32 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBBP7 23 16839283 16870414 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 16 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBBP8 18 22798261 23026488 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 21 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBBP8NL 20 62410237 62427533 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 16 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBBP9 20 18486540 18497243 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBCK1 20 407498 430966 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBFA 18 80034358 80046397 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBFOX1 16 5239802 7713338 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBFOX2 22 35738736 36028425 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBFOX3 17 79089345 79516148 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBKS 2 27781364 27891098 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBL1 20 36996349 37095995 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBL2 16 53433977 53491649 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 24 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM10 23 47144869 47186813 TRUE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 32 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM11 21 14216130 14228372 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM12 20 35648925 35664956 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM12B 8 93729356 93741017 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM14 11 66616582 66627347 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM14-RBM4 11 66616626 66646469 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM15 1 110338506 110346681 TRUE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM15B 3 51391268 51397908 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM17 10 6088987 6117457 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM18 9 122237624 122264839 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM19 12 113816738 113966371 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 25 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM20 10 110644397 110839469 FALSE 336 0.281281646454176 97 110567687 113628982 0.39968910724052 4 NA 0.39968910724052 4 NA 3061295 NA 14 22 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM22 5 150690794 150701107 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM23 14 22893206 22919184 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 12 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM24 6 17281346 17293875 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM25 14 73058436 73123898 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 21 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM26 13 79311824 79406477 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM27 5 146203600 146289132 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM28 7 128297685 128343908 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM3 23 48574449 48579066 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM33 7 155644451 155781485 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 26 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM34 1 235131183 235161457 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM38 20 57391407 57409333 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM39 20 35701347 35742312 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 17 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM4 11 66638617 66668374 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM41 23 107064420 107118823 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM42 19 35629030 35637686 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 11 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM43 2 151247940 151261879 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM44 2 237798389 237842808 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 21 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM45 2 178112424 178139011 FALSE 89 -0.503631193706026 35 177420363 178547579 0.252021069663427 1 0 0.252021069663427 1 0 1127216 1 11 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM46 4 154781213 154828813 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM47 4 40423267 40630875 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 8 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM48 7 92528773 92538005 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM4B 11 66664998 66677921 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM5 3 50088908 50119021 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 23 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM6 3 49940007 50100045 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 31 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM7 11 114400030 114414203 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBM8A 1 145917714 145927678 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBMS1 2 160272151 160493794 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBMS2 12 56521929 56596196 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBMS3 3 28574791 30010391 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBMX 23 136848004 136880764 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 10 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBMX2 23 130401969 130413343 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBMXL1 1 88979456 88992960 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 6 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBMXL2 11 7089027 7090900 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBMXL3 23 115189427 115192868 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 12 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBP1 3 139517434 139539829 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBP2 3 139452884 139480747 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBP3 10 47348371 47357875 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 14 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBP4 10 93591687 93601744 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBP5 12 7123684 7128942 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBP7 1 9997206 10016020 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBPJ 4 26163455 26435131 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBPJL 20 45306851 45317824 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBPMS 8 30384479 30572261 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBPMS2 15 64739892 64775587 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBSN 3 15070073 15099163 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RBX1 22 40951347 40973309 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RC3H1 1 173931214 174022297 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RC3H2 9 122844556 122905341 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 23 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCAN1 21 34513142 34615142 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCAN2 6 46220736 46491972 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCAN3 1 24502351 24541040 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 4 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCBTB1 13 49531946 49585583 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCBTB2 13 48488959 48533256 FALSE 434 0.661158851956757 108 48261213 48511837 0.397448435712946 7 NA 0.397448435712946 7 NA 250624 NA 4 15 0 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCC1 1 28505943 28539300 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCC1L 7 75027122 75074228 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCC2 1 17406760 17439724 FALSE 16 0.136831934058324 84 16759339 18631648 0.243587385410565 5 2 0.243587385410565 5 2 1872309 3 15 15 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCCD1 15 90954870 90963125 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCE1 11 66842835 66846546 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCHY1 4 75479037 75514764 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCL1 9 4792869 4885917 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 9 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCN1 11 32090904 32105755 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCN2 15 76931619 76954392 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCN3 19 49527618 49546962 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCOR1 14 102592661 102730576 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCOR2 11 63911221 63916844 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCOR3 1 211258377 211316385 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 14 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCSD1 1 167630093 167706249 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RCVRN 17 9896320 9905621 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RD3 1 211476522 211492917 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RD3L 14 103940426 103942561 FALSE 470 -0.28238273283378 51 103746376 104759488 NA 2 NA NA 2 NA 1013112 NA 11 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RDH10 8 73294612 73325281 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RDH11 14 67676801 67695814 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RDH12 14 67701886 67734452 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 8 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RDH13 19 55039108 55071291 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 7 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RDH14 2 18554723 18560680 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RDH16 12 56951431 56959374 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RDH5 12 55720367 55724705 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RDH8 19 10013249 10022279 FALSE 612 -0.2463765322708 51 9849131 10133617 NA 2 NA NA 2 NA 284486 NA 11 7 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RDM1 17 35918066 35930773 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RDX 11 109864295 110296722 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REC114 15 73443158 73560014 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REC8 14 24171853 24180257 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 16 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RECK 9 36036433 36124451 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 26 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RECQL 12 21468911 21501669 TRUE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 31 7 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RECQL4 8 144511288 144517845 TRUE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 25 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RECQL5 17 75626845 75667189 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 27 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REELD1 4 146214515 146230878 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REEP1 2 86213993 86338083 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REEP2 5 138439017 138446969 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REEP3 10 63521363 63625123 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REEP4 8 22138020 22141951 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REEP5 5 112876379 112922539 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REEP6 19 1490747 1497927 FALSE 589 -0.44786516347233 39 1398963 1609436 NA 2 NA NA 2 NA 210473 NA 14 6 4 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REG1A 2 79120362 79123419 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REG1B 2 79085030 79088019 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REG3A 2 79157003 79159753 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REG3G 2 79025686 79028505 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REG4 1 119794018 119811660 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REL 2 60881521 60931610 FALSE 63 0.867855860307907 113 60881556 60931617 0.397448435712946 8 NA 0.397448435712946 8 NA 50061 NA 1 40 2 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RELA 11 65653596 65663094 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RELB 19 45001430 45038198 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RELCH 18 62187255 62310217 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 34 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RELL1 4 37590800 37686376 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RELL2 5 141636950 141641077 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RELN 7 103471784 103989516 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 69 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RELT 11 73376264 73397474 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REM1 20 31475293 31484905 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REM2 14 22883165 22887686 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REN 1 204154819 204190324 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RENBP 23 153935263 153944691 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REP15 12 27696519 27697596 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REPIN1 7 150368189 150374044 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 8 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REPS1 6 138903493 138988261 FALSE 220 0.0543375783167098 82 138298662 142443515 0.298111653356898 4 NA 0.298111653356898 4 NA 4144853 NA 16 20 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REPS2 23 16946691 17153280 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 18 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RER1 1 2391775 2405444 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RERE 1 8352397 8817643 FALSE 7 0.18541391362799 90 8324498 9691530 0.275334878251284 5 NA 0.275334878251284 5 NA 1367032 NA 12 30 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RERG 12 15107783 15348675 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RERGL 12 18080869 18320107 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 17 1 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RESP18 2 219327409 219333177 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 8 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REST 4 56907876 56966678 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RET 10 43077027 43130351 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 66 20 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RETN 19 7669044 7670454 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RETNLB 3 108743424 108757384 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RETREG1 5 16473038 16617058 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 13 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RETREG2 2 219176225 219185479 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 13 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RETREG3 17 42579513 42610623 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RETSAT 2 85342088 85354620 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 12 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REV1 2 99400475 99490035 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 25 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REV3L 6 111299028 111483715 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 56 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REX1BD 19 18588685 18592336 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REXO1 19 1815246 1848463 FALSE 591 -0.292096165521122 44 1753671 2129102 0.213873728132233 2 0 0.213873728132233 2 0 375431 2 13 23 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REXO2 11 114439386 114450279 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REXO4 9 133406059 133418096 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 REXO5 16 20806429 20849668 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFC1 4 39287456 39366375 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 27 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFC2 7 74231499 74254458 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFC3 13 33818049 33966558 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFC4 3 186789880 186807058 FALSE 136 0.193577617007497 90 186677783 187370824 0.275334878251284 5 NA 0.275334878251284 5 NA 693041 NA 10 10 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFC5 12 118013588 118033130 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFESD 5 95646754 95684773 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFFL 17 35005990 35089319 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFK 9 76385517 76394517 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFLNA 12 123973241 124316024 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFLNB 17 439978 445939 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFNG 17 82047902 82051831 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 8 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFPL1 22 29438583 29442455 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 5 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFPL2 22 32190435 32203477 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFPL3 22 32354885 32361161 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 5 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFPL4A 19 55759014 55763175 FALSE 680 -0.746582857980643 27 55712403 55809041 0.255173832388045 0 0 0.255173832388045 0 0 96638 0 4 5 3 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFPL4AL1 19 55769141 55773179 FALSE 680 -0.746582857980643 27 55712403 55809041 0.255173832388045 0 0 0.255173832388045 0 0 96638 0 4 4 3 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFPL4B 6 112347330 112351296 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFT1 3 53088483 53130462 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFTN1 3 16313574 16514026 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFTN2 2 197568224 197676045 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFWD3 16 74621394 74666881 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFX1 19 13961538 14007039 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 24 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFX2 19 5993164 6199572 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 33 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFX3 9 3218297 3526004 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 18 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFX4 12 106582907 106762803 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 21 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFX5 1 151340640 151347357 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFX6 6 116877212 116932163 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 22 5 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFX7 15 56087280 56243266 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 22 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFX8 2 101397361 101474703 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFXANK 19 19192229 19201869 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RFXAP 13 36819224 36829104 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGCC 13 41457559 41470882 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGL1 1 183636085 183928531 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 26 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGL2 6 33291654 33299324 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGL3 19 11384341 11419342 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 18 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGL4 22 23688136 23699176 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGMA 15 93035273 93089204 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGMB 5 98768650 98798643 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGN 23 47078355 47093314 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGP1 9 35749287 35758575 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGPD1 2 86907953 87013976 FALSE 70 -0.71547500568643 29 86815737 88028585 0.39968910724052 1 0 0.39968910724052 1 0 1212848 1 6 6 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGPD2 2 87755955 87825952 FALSE 70 -0.71547500568643 29 86815737 88028585 0.39968910724052 1 0 0.39968910724052 1 0 1212848 1 6 9 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGPD3 2 106391290 106468376 FALSE 78 -0.410137368612735 39 106158011 108293668 NA 2 NA NA 2 NA 2135657 NA 8 27 6 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGPD4 2 107826937 107890841 FALSE 78 -0.410137368612735 39 106158011 108293668 NA 2 NA NA 2 NA 2135657 NA 8 27 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGPD6 2 110513812 110577185 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 1 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGPD8 2 112370092 112434488 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGR 10 84245053 84259960 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS1 1 192575727 192580031 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS10 10 119499828 119542708 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS11 16 268301 275980 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 15 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS12 4 3293028 3439913 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 28 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS13 1 192636138 192660306 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS14 5 177357837 177372601 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS16 1 182598623 182604408 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS17 6 153004459 153131249 FALSE 224 -0.117433393604286 66 152211521 156776133 0.330876988437597 3 0 0.330876988437597 3 0 4564612 3 15 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS18 1 192158457 192185815 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS19 20 64073181 64079988 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS2 1 192809039 192812283 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS20 8 53851808 53959303 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS21 1 192316992 192367285 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS22 8 99960936 100131268 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 30 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS3 9 113444731 113597743 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 34 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS4 1 163068775 163076802 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS5 1 163111121 163321791 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS6 14 71932439 72566529 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 18 2 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS7 1 240775515 241357230 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS7BP 5 64506257 64612312 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS8 1 182641816 182684576 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS9 17 65100812 65227703 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGS9BP 19 32675407 32678300 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RGSL1 1 182409192 182560599 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 24 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHAG 6 49605158 49636884 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHBDD1 2 226835581 226999215 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHBDD2 7 75842602 75888926 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHBDD3 22 29259852 29268209 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHBDF1 16 58059 76355 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 19 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHBDF2 17 76470891 76501790 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 18 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHBDL1 16 675666 678268 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHBDL2 1 38885807 38941799 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHBDL3 17 32266176 32324661 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHBG 1 156369212 156385219 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHCE 1 25362249 25430192 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHCG 15 89471398 89496613 FALSE 499 -0.326925020976481 44 88857449 89702022 0.213873728132233 2 0 0.213873728132233 2 0 844573 2 13 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHD 1 25272393 25330445 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHEB 7 151466012 151520120 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHEBL1 12 49064685 49070025 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHEX 1 206052723 206102459 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHNO1 12 2876258 2889523 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHO 3 129528640 129535169 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOA 3 49359145 49412998 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 16 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOB 2 20447074 20449445 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOBTB1 10 60869438 61001440 FALSE 324 0.504242099052201 104 60086767 62198353 0.397448435712946 6 NA 0.397448435712946 6 NA 2111586 NA 7 13 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOBTB2 8 22987417 23020199 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOBTB3 5 95713522 95824383 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 16 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOC 1 112701106 112707434 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOD 11 67056818 67072013 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOF 12 121777754 121803403 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOG 11 3826978 3840983 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOH 4 40191053 40246967 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOJ 14 63204114 63293219 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 5 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOQ 2 46541806 46583121 FALSE 59 -0.32871660107588 46 46484402 47170815 NA 2 NA NA 2 NA 686413 NA 11 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOT1 17 32142454 32253374 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOT2 16 668086 674174 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOU 1 228735077 228746669 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOV 15 40872214 40874289 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOXF1 23 120109053 120115937 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOXF2 23 120158561 120165630 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHOXF2B 23 120070672 120077705 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHPN1 8 143368887 143384220 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 15 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RHPN2 19 32978593 33064888 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIBC1 23 53422690 53431120 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 9 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIBC2 22 45413691 45432496 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIC1 9 5629025 5776557 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 30 2 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIC3 11 8106093 8169055 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 10 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIC8A 11 207511 215113 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIC8B 12 106774595 106889316 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RICTOR 5 38937919 39074408 FALSE 162 0.66567045546691 108 38937964 39003620 0.397448435712946 7 NA 0.397448435712946 7 NA 65656 NA 2 60 1 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIDA 8 98102344 98117241 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIF1 2 151409883 151508013 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 69 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIIAD1 1 151710433 151729805 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RILP 17 1646145 1650077 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RILPL1 12 123470054 123533718 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RILPL2 12 123410683 123436717 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIMBP2 12 130396137 130716281 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 28 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIMBP3 22 18605815 18611919 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 8 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIMBP3B 22 21383374 21389478 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 4 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIMKLA 1 42380795 42422578 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIMKLB 12 8681600 8783095 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIMS1 6 71886703 72403143 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 45 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIMS2 8 103500748 104256094 FALSE 274 -0.276254726456932 51 103435783 105801444 NA 2 NA NA 2 NA 2365661 NA 7 44 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIMS3 1 40620679 40665657 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIMS4 20 44751808 44810338 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIN1 11 66330242 66336840 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIN2 20 19757606 20002459 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 18 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIN3 14 92513774 92688994 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RING1 6 33208495 33212722 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RINL 19 38867834 38878279 FALSE 646 -0.00229584309761491 77 38714572 38869416 0.252310779181821 4 NA 0.252310779181821 4 NA 154844 NA 9 13 1 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RINT1 7 105532085 105567677 FALSE 247 -0.18197294596649 62 105388711 106112210 0.235629703240478 3 NA 0.235629703240478 3 NA 723499 NA 7 18 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIOK1 6 7389496 7418037 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 17 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIOK2 5 97160867 97183260 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 13 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIOK3 18 23452823 23486603 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIOX1 14 73490964 73493392 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 8 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIOX2 3 97941818 97972457 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIPK1 6 3063991 3115187 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIPK2 8 89757747 89791063 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIPK3 14 24336021 24340045 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIPK4 21 41739369 41767106 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 14 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIPOR1 16 67518418 67546788 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 27 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIPOR2 6 24804281 25042170 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 31 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIPOR3 20 50586108 50691528 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 25 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIPPLY1 23 106900063 106903335 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIPPLY2 6 83853266 83857515 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIPPLY3 21 37006150 37019659 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIT1 1 155897808 155911404 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RIT2 18 42743227 43115691 FALSE 575 0.704801540732652 110 41955285 45736573 0.397448435712946 7 4 0.397448435712946 7 4 3781288 3 6 6 3 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RITA1 12 113185526 113192368 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RLBP1 15 89209869 89221751 FALSE 499 -0.326925020976481 44 88857449 89702022 0.213873728132233 2 0 0.213873728132233 2 0 844573 2 13 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RLF 1 40161373 40240921 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RLIM 23 74585217 74614617 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RLN1 9 5334969 5339873 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 3 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RLN2 9 5299868 5304969 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 3 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RLN3 19 14028148 14031042 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 4 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RMC1 18 23503470 23531807 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 20 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RMDN1 8 86468257 86514357 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 11 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RMDN2 2 37923187 38067142 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 17 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RMDN3 15 40735884 40755851 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RMI1 9 83980711 84004074 FALSE 293 -0.328784635523128 44 81990823 84670815 0.213873728132233 2 0 0.213873728132233 2 0 2679992 2 12 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RMI2 16 11249619 11381662 FALSE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 31 8 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RMND1 6 151404762 151452181 FALSE 223 0.236892508535766 96 150395481 152208217 0.39968910724052 4 1 0.39968910724052 4 1 1812736 3 10 12 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RMND5A 2 86720173 86778041 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 9 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RMND5B 5 178130996 178150565 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASE1 14 20801228 20803278 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASE10 14 20505537 20511169 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASE11 14 20583559 20609884 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASE12 14 20590193 20590823 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASE13 14 21032820 21034785 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASE2 14 20955452 20956436 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASE3 14 20891399 20892348 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASE4 14 20684100 20701215 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASE6 14 20781051 20782467 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASE7 14 21042226 21044234 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASE8 14 21057822 21058455 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASE9 14 20556093 20560931 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASEH1 2 3544793 3558616 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASEH2A 19 12806556 12815201 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASEH2B 13 50909678 51024120 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASEH2C 11 65714005 65720947 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASEK 17 7012417 7014532 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASEK-C17orf49 17 7012635 7017520 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASEL 1 182573634 182589256 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNASET2 6 166929504 166957191 FALSE 228 -0.0936034159017556 66 165280135 167136462 0.330876988437597 3 0 0.330876988437597 3 0 1856327 3 12 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RND1 12 48857145 48865898 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RND2 17 43025241 43032036 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RND3 2 150468195 150539011 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF10 12 120533480 120577594 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF103 2 86603393 86623866 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF103-CHMP3 2 86505668 86721122 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 19 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF11 1 51236271 51273455 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF111 15 58865175 59097419 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 43 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF112 17 19411125 19417276 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 15 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF113A 23 119870475 119871827 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF113B 13 98175785 98177265 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF114 20 49936336 49953892 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF115 1 145738868 145824077 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF121 11 71928701 71997597 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF122 8 33547755 33567125 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF123 3 49689499 49721529 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 47 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF125 18 32018372 32073213 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 6 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF126 19 647526 663277 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF128 23 106693794 106796993 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF13 3 149812708 149962139 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF130 5 179911651 180072118 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF133 7 122697712 122699156 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF135 17 30968785 30999911 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF138 18 32091855 32131561 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 7 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF139 8 124474738 124487914 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF14 5 141958328 141990291 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF141 11 10511678 10541230 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF144A 2 6917392 7068286 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 8 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF144B 6 18387350 18468874 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF145 5 159157409 159210053 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF146 6 127266610 127288567 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF148 7 122701664 122702967 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF149 2 101271219 101308701 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF150 4 140859807 141212877 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF151 16 1966823 1968975 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF152 18 61808063 61894247 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF157 17 76142453 76240373 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 19 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF165 18 46326809 46463140 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF166 16 88696495 88706421 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 6 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF167 17 4940008 4945222 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF168 3 196468783 196503768 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF169 11 74748868 74842413 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF17 13 24764152 24879921 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 38 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF170 8 42849637 42897290 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF175 4 153710125 153760235 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF180 5 64165844 64372869 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF181 2 85595725 85597613 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF182 6 13924446 13980302 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 3 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF183 9 113297093 113303376 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF185 22 31160183 31207019 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF186 1 19814029 19815278 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF187 1 228487061 228495766 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF19A 8 100257060 100336218 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF19B 1 32936445 32964685 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF2 1 185045364 185102608 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF20 9 101533851 101563344 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 20 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF207 1 6205475 6221299 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 16 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF208 9 137220247 137221581 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF212 4 1056250 1113562 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF212B 14 23185316 23273477 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 14 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF213 17 80260866 80398786 FALSE 570 -0.251638265228374 50 80089734 80476396 1 2 1 1 2 1 386662 1 9 93 8 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF214 11 117232625 117286445 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF215 22 30368811 30421771 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF216 7 5620047 5781739 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 20 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF217 6 124962545 125092633 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF219 13 78614291 78659179 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF220 1 44405194 44651724 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF222 17 8390704 8397826 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 3 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF223 1 1070966 1074307 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 3 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF224 9 137227271 137229638 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF225 19 58396090 58397079 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF227 17 7913324 7916276 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF24 20 3927309 4015582 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF25 2 218663864 218672411 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF26 11 119334527 119337313 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 6 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF31 14 24146683 24160661 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 24 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF32 7 156640281 156677130 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF34 12 121400041 121430623 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF38 9 36336396 36487548 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF39 6 30070266 30075887 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 8 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF4 4 2462220 2625320 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 9 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF40 16 30761745 30776307 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF41 12 56202175 56221933 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF43 17 58352500 58417595 TRUE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 39 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF44 5 176526697 176538025 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 12 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF5 6 32178354 32180793 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF6 13 26132115 26222493 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF7 3 141738204 141747560 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNF8 6 37353972 37394738 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNFT1 17 59952240 59964761 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 10 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNFT2 12 116738178 116853631 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNGTT 6 88610272 88963721 FALSE 201 -0.221189436484543 57 87265553 88929289 0.158317833115363 3 NA 0.158317833115363 3 NA 1663736 NA 12 17 2 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNH1 11 494512 507300 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 11 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNLS 10 88273864 88584530 FALSE 331 0.160746647112512 87 88274961 89024998 0.206344716318008 6 3 0.206344716318008 6 3 750037 3 10 8 1 FALSE AMP (BALANCED) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNMT 18 13726660 13764558 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNPC3 1 103525691 103555239 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNPEP 1 201982372 202006147 FALSE 36 -0.0702600326825716 67 201211017 202010242 0.31995059840763 3 NA 0.31995059840763 3 NA 799225 NA 14 14 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNPEPL1 2 240565804 240581372 FALSE 109 -0.204551948627658 52 240042747 240874079 0.261858812358373 3 1 0.261858812358373 3 1 831332 2 13 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RNPS1 16 2253116 2268412 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROBO1 3 78597240 79767815 TRUE 121 -0.0206780540273211 77 75738958 89482041 0.252310779181821 4 NA 0.252310779181821 4 NA 13743083 NA 14 38 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROBO2 3 75906695 77649964 FALSE 121 -0.0206780540273211 77 75738958 89482041 0.252310779181821 4 NA 0.252310779181821 4 NA 13743083 NA 14 33 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROBO3 11 124865386 124881470 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROBO4 11 124883691 124898500 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROCK1 18 20946906 21111851 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 34 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROCK2 2 11179761 11348330 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 36 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROGDI 16 4796968 4802950 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROM1 11 62611722 62615120 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROMO1 20 35699272 35700984 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROPN1 3 123968521 123992178 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROPN1B 3 125969144 125983454 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROPN1L 5 10441524 10472029 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROR1 1 63774022 64181498 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROR2 9 91563091 91950162 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 17 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RORA 15 60488284 61229319 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RORB 9 74497365 74693177 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RORC 1 151806071 151831872 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ROS1 6 117288300 117425855 FALSE 211 0.437218059892028 102 116922097 117331289 0.397448435712946 5 2 0.397448435712946 5 2 409192 3 4 147 47 TRUE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RP1 8 54509422 54871720 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 27 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RP1L1 8 10606349 10712187 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 33 7 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RP2 23 46836940 46882358 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RP9 7 33094797 33109401 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 7 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPA1 17 1829702 1900082 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPA2 1 27891524 27914746 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPA3 7 7636518 7718607 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPA4 23 96883908 96885467 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPAIN 17 5419641 5432876 FALSE 538 -0.524547519785345 34 5395000 5521780 0.312402751065481 1 0 0.312402751065481 1 0 126780 1 7 8 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPAP1 15 41517176 41544269 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 28 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPAP2 1 92298965 92402056 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPAP3 12 47661249 47706061 FALSE 400 0.134361824814035 86 46793047 47718156 0.360033220093454 4 NA 0.360033220093454 4 NA 925109 NA 5 17 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPE 2 210002565 210022259 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPE65 1 68428822 68449959 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPEL1 10 103245887 103248016 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPF1 1 84479259 84497790 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPF2 6 110982015 111028263 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPGR 23 38269163 38327564 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 22 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPGRIP1 14 21287939 21351301 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPGRIP1L 16 53598153 53703938 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 29 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPH3A 12 112570380 112898881 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 21 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPH3AL 17 212389 386254 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPIA 2 88691644 88750935 FALSE 71 0.0815929456248537 82 88067910 95104630 0.298111653356898 4 NA 0.298111653356898 4 NA 7036720 NA 11 10 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL10 23 154389955 154409168 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL10A 6 35468408 35470785 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL10L 14 46651010 46651821 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 3 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL11 1 23691742 23696835 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL12 9 127447674 127451405 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL13 16 89560657 89566828 FALSE 533 -0.192592276429899 57 89508498 89586624 0.158317833115363 3 NA 0.158317833115363 3 NA 78126 NA 3 5 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL13A 19 49487554 49492308 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL14 3 40457292 40468587 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL15 3 23916545 23924374 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL17 18 49488453 49492523 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL17-C18orf32 18 49481681 49492479 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL18 19 48615328 48619536 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL18A 19 17859876 17864153 FALSE 633 -0.0653644831439953 67 17843737 18149705 0.31995059840763 3 NA 0.31995059840763 3 NA 305968 NA 8 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL19 17 39200283 39204732 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL21 13 27251309 27256691 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL22 1 6185020 6209389 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 8 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL22L1 3 170864875 170870483 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL23 17 38847865 38853843 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL23A 17 28719393 28724359 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL24 3 101681091 101686782 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL26 17 8377516 8383250 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL26L1 5 172958729 172969771 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL27 17 42998273 43002959 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL27A 11 8682411 8714759 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 19 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL28 19 55385345 55403250 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 8 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL29 3 51993522 51995942 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL3 22 39312882 39320389 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL30 8 98024851 98046469 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL31 2 101001715 101024032 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 13 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL32 3 12834485 12841588 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL34 4 108620566 108630412 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL35 9 124857880 124861981 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL35A 3 197949980 197956610 FALSE 140 0.171385044141441 90 197852595 198169826 0.275334878251284 5 NA 0.275334878251284 5 NA 317231 NA 4 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL36 19 5674947 5691876 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL36A 23 101390824 101396154 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL36A-HNRNPH2 23 101391011 101412297 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 16 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL36AL 14 49618519 49620685 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 2 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL37 5 40825262 40835335 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL37A 2 216498189 216579180 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL38 17 74203582 74210655 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL39 23 119786504 119791643 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL39L 3 187120948 187180908 FALSE 136 0.193577617007497 90 186677783 187370824 0.275334878251284 5 NA 0.275334878251284 5 NA 693041 NA 10 1 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL3L 16 1943974 1957606 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL4 15 66498015 66524532 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL41 12 56116586 56117943 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL5 1 92831983 92841924 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL6 12 112405190 112418838 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL7 8 73290267 73295789 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL7A 9 133348214 133351426 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL7L1 6 42879618 42889925 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL8 8 144789765 144792587 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPL9 4 39452521 39458949 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPLP0 12 120196686 120201235 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPLP1 15 69452784 69456194 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPLP2 11 809647 812880 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPN1 3 128619970 128681075 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPN2 20 37178410 37241623 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPP14 3 58306247 58324695 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPP21 6 30345131 30346884 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPP25 15 74954416 74957464 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPP25L 9 34610486 34612104 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPP30 10 90871716 90908553 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPP38 10 15097180 15139818 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPP40 6 4994732 5004063 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPRD1A 18 35984387 36067576 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPRD1B 20 38033546 38127780 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPRD2 1 150363091 150476566 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPRM 2 153477338 153478808 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPRML 17 46978156 46979248 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS10 6 34417454 34426125 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS10-NUDT3 6 34284887 34426071 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS11 19 49496365 49499689 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS12 6 132814441 132817564 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS13 11 17074389 17077787 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS14 5 150442635 150449756 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS15 19 1438358 1440494 FALSE 589 -0.44786516347233 39 1398963 1609436 NA 2 NA NA 2 NA 210473 NA 14 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS15A 16 18781295 18790383 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS16 19 39433207 39435948 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS17 15 82536750 82540564 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS18 6 33272010 33276510 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS19 19 41859918 41872926 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS19BP1 22 39529093 39532855 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS2 16 1962052 1964860 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS20 8 56067295 56074581 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS21 20 62387116 62388520 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS23 5 82273358 82278577 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS24 10 78033732 78056813 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS25 11 119015712 119018691 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS26 12 56041351 56044697 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS27 1 153990755 153992155 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS27A 2 55231903 55235853 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 5 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS27L 15 63125872 63158021 FALSE 487 0.296385928010631 99 61991730 63677860 0.361681390833996 5 NA 0.361681390833996 5 NA 1686130 NA 13 11 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS28 19 8321158 8323340 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS29 14 49570984 49599164 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS3 11 75399486 75422280 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS3A 4 151099573 151104652 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS4X 23 72255679 72277300 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS5 19 58386400 58394806 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 5 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS6 9 19375715 19380254 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS6KA1 1 26529761 26575030 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS6KA2 6 166409364 166906451 FALSE 228 -0.0936034159017556 66 165280135 167136462 0.330876988437597 3 0 0.330876988437597 3 0 1856327 3 12 24 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS6KA3 23 20149911 20267519 FALSE 706 0.169663593513349 90 19670859 20156144 0.275334878251284 2 NA 0.275334878251284 2 NA 485285 NA 5 22 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS6KA4 11 64359148 64372215 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 22 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS6KA5 14 90847862 91060636 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS6KA6 23 84058346 84187907 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 23 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS6KB1 17 59893046 59950564 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 30 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS6KB2 11 67428460 67435408 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS6KC1 1 213051233 213274773 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS6KL1 14 74903954 74923396 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 13 2 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS7 2 3575205 3580920 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS8 1 44775251 44778779 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPS9 19 54200742 54249003 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 29 10 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPSA 3 39406689 39412542 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPTN 1 152153595 152159228 FALSE 30 -1.0065224812273 20 152085351 152410539 0.381347761373373 0 0 0.381347761373373 0 0 325188 0 7 10 1 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPTOR 17 80544819 80966371 FALSE 571 0.525418499841411 105 80544980 80966164 0.397448435712946 6 NA 0.397448435712946 6 NA 421184 NA 1 47 9 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPUSD1 16 784974 788397 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPUSD2 15 40569300 40574943 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPUSD3 3 9837849 9844602 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RPUSD4 11 126202094 126211692 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRAD 16 66921679 66925644 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRAGA 9 19049395 19050983 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRAGB 23 55717739 55758774 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 11 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRAGC 1 38838198 38859823 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRAGD 6 89364636 89412270 FALSE 202 -0.0287117028264841 72 88941203 89712641 0.211382613745547 4 NA 0.211382613745547 4 NA 771438 NA 11 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRAS 19 49635292 49640201 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRAS2 11 14277926 14364506 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRBP1 20 17613678 17682295 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 26 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RREB1 6 7107597 7251980 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 24 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRH 4 109827994 109844604 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRM1 11 4094707 4138876 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 19 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRM2 2 10120698 10131419 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRM2B 8 102204502 102239118 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 10 1 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRN3 16 15060022 15094317 FALSE 519 -0.0068915740419202 77 14482806 15617149 0.252310779181821 4 NA 0.252310779181821 4 NA 1134343 NA 15 18 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRNAD1 1 156728442 156736960 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRP1 21 43789513 43805293 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 14 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRP12 10 97356358 97426076 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 34 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRP15 1 218285287 218337983 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRP1B 21 43659548 43696079 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 18 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRP36 6 43021645 43034156 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRP7A 22 42509968 42519802 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRP8 11 6595075 6603620 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRP9 3 51933430 51941941 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 15 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RRS1 8 66429028 66430733 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RS1 23 18639910 18672109 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 9 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSAD1 17 50478800 50485975 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSAD2 2 6865806 6898239 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSBN1 1 113761832 113812476 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSBN1L 7 77696443 77783022 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSC1A1 1 15659869 15661722 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSF1 11 77659996 77821017 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSL1D1 16 11833850 11851585 FALSE 517 -0.0362540617203195 72 11676092 11941161 0.211382613745547 4 NA 0.211382613745547 4 NA 265069 NA 6 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSL24D1 15 55180806 55197067 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSPH1 21 42472486 42496354 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSPH10B 7 5925550 5970683 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 15 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSPH10B2 7 6754109 6799365 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSPH14 22 23059415 23145021 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 12 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSPH3 6 158972871 159000187 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSPH4A 6 116616479 116632985 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSPH6A 19 45795710 45815319 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSPH9 6 43645046 43672599 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSPO1 1 37611350 37634923 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSPO2 8 107899316 108083648 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSPO3 6 127118604 127197765 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 113 22 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSPO4 20 958452 1002264 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSPRY1 16 57186137 57240475 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSRC1 3 158105855 158545730 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSRC2 12 122503458 122527000 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSRP1 1 25242237 25338213 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 16 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RSU1 10 16590611 16817528 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTBDN 19 12825478 12835428 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 8 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTCA 1 100266207 100292769 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTCB 22 32387582 32412255 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTEL1 20 63657810 63696253 TRUE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 38 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTEL1-TNFRSF6B 20 63659300 63698684 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 44 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTF1 15 41408408 41483563 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTF2 20 56468585 56519449 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 16 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTKN 2 74425836 74442422 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTKN2 10 62183035 62268707 FALSE 324 0.504242099052201 104 60086767 62198353 0.397448435712946 6 NA 0.397448435712946 6 NA 2111586 NA 7 14 5 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTL1 14 100879753 100903722 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 16 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTL10 22 19846138 19854896 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTL3 23 78656069 78659328 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTL4 23 112454500 112457112 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTL5 23 72127110 72131901 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTL6 22 44492572 44498298 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTL8A 23 135050932 135052196 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTL8B 23 135020504 135022529 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTL8C 23 135032366 135033546 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTL9 23 110358816 110456334 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 18 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTN1 14 59595976 59870966 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 16 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTN2 19 45485289 45497061 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTN3 11 63681446 63759891 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTN4 2 54972187 55112621 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 21 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTN4IP1 6 106571971 106629487 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTN4R 22 20241415 20283246 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTN4RL1 17 1934677 2025345 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTN4RL2 11 57460549 57477534 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTP1 3 187197486 187201465 FALSE 136 0.193577617007497 90 186677783 187370824 0.275334878251284 5 NA 0.275334878251284 5 NA 693041 NA 10 4 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTP2 3 187698259 187702557 FALSE 137 0.632133845014845 107 187371138 189902345 0.397448435712946 7 NA 0.397448435712946 7 NA 2531207 NA 7 3 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTP3 3 46497491 46500949 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTP4 3 187368332 187372076 FALSE 136 0.193577617007497 90 186677783 187370824 0.275334878251284 5 NA 0.275334878251284 5 NA 693041 NA 10 4 2 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTP5 2 241869600 241873823 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 9 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTRAF 14 51989475 52010691 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 12 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RTTN 18 70003031 70205945 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 51 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUBCN 3 197671393 197749727 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUBCNL 13 46342000 46438190 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUFY1 5 179550558 179610026 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUFY2 10 68341107 68407294 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 24 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUFY3 4 70704204 70807315 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUFY4 2 218034960 218090581 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 12 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUNDC1 17 42980565 42993690 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUNDC3A 17 44308413 44318671 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUNDC3B 7 87627548 87832296 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUNX1 21 34787801 36004667 TRUE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 50 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUNX1T1 8 91954967 92103286 FALSE 270 1.15772175814929 117 91959014 92095569 0.397448435712946 11 NA 0.397448435712946 11 NA 136555 NA 1 29 0 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUNX2 6 45328157 45664349 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUNX3 1 24899511 24965121 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUSC1 1 155320896 155331114 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUSC2 9 35490127 35561898 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 23 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUVBL1 3 128064778 128153914 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RUVBL2 19 48993448 49015995 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RWDD1 6 116571367 116597675 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RWDD2A 6 83193379 83198932 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RWDD2B 21 29004384 29019378 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RWDD3 1 95234155 95247225 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RWDD4 4 183639635 183659225 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 8 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RXFP1 4 158315311 158653372 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RXFP2 13 31739542 31803388 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 22 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RXFP3 5 33936386 33938237 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RXFP4 1 155941710 155942949 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RXRA 9 134317098 134440585 FALSE 307 0.839250393178831 113 134326493 134730469 0.397448435712946 8 NA 0.397448435712946 8 NA 403976 NA 2 34 1 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RXRB 6 33193588 33200688 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RXRG 1 165400917 165445355 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 11 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RXYLT1 12 63779803 63809558 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RYBP 3 72371825 72446621 TRUE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 39 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RYK 3 134065303 134250744 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 15 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RYR1 19 38433699 38587564 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 124 4 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RYR2 1 237042205 237833988 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 118 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 RYR3 15 33310945 33866121 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 116 18 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A1 1 153627926 153632039 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A10 1 151982915 151994390 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A11 1 152032506 152047907 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A12 1 153373706 153375649 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A13 1 153618787 153631360 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A14 1 153614255 153616986 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A16 1 153606886 153613145 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A2 1 153561108 153567890 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A3 1 153547329 153549372 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A4 1 153543613 153550136 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A5 1 153537147 153541765 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A6 1 153534599 153536244 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A7 1 153457744 153460701 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A7A 1 153416524 153423225 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A7L2 1 153437058 153439949 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A8 1 153390032 153391188 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100A9 1 153357854 153361027 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100B 21 46598962 46605208 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100G 23 16650158 16654670 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 2 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100P 4 6693069 6697170 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100PBP 1 32816767 32858879 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S100Z 5 76850001 76921650 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S1PR1 1 101236865 101243713 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S1PR2 19 10221433 10231331 FALSE 613 0.734659655541196 111 10134096 10231337 0.397448435712946 7 NA 0.397448435712946 7 NA 97241 NA 2 11 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S1PR3 9 88990863 89005010 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S1PR4 19 3172346 3180332 FALSE 597 -0.316308503877712 46 3155904 3648696 NA 2 NA NA 2 NA 492792 NA 16 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 S1PR5 19 10512742 10517931 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAA1 11 18266174 18269977 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAA2 11 18239223 18248643 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAA2-SAA4 11 18231423 18248635 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAA4 11 18231349 18236893 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAAL1 11 18069935 18106091 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAC3D1 11 65040901 65044828 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SACM1L 3 45689056 45745424 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 20 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SACS 13 23328826 23433740 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 59 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAE1 19 47113274 47210636 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 9 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAFB 19 5623035 5668478 FALSE 605 -0.992174434124463 21 5610728 5651066 0.383364652758899 0 0 0.383364652758899 0 0 40338 0 2 22 0 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAFB2 19 5586999 5624046 FALSE 604 -0.336428649063697 46 5304635 5610091 NA 2 NA NA 2 NA 305456 NA 4 23 1 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAG 2 233307816 233347055 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAGE1 23 135889205 135913061 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 20 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SALL1 16 51135975 51151367 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SALL2 14 21521081 21537216 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SALL3 18 78980275 79002677 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 15 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SALL4 20 51782331 51802520 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD1 19 14087840 14091036 FALSE 622 0.0684639159029493 82 13804937 14482950 0.298111653356898 4 NA 0.298111653356898 4 NA 678013 NA 21 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD10 20 63974113 63980008 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD11 1 923928 944581 FALSE 1 -0.106716554101356 67 69453 1051961 0.31995059840763 3 NA 0.31995059840763 3 NA 982508 NA 11 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD12 8 118189455 118622112 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD13 1 84298366 84389957 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD14 17 50110040 50129882 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD15 14 77376689 77391497 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 10 4 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD3 6 130144315 130365425 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD4A 14 54567097 54793315 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 17 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD4B 19 39342396 39385710 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD5 6 147508927 147737547 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD7 3 169911572 169939175 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD8 10 75099586 75182123 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD9 7 93099513 93118023 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMD9L 7 93130055 93148369 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMHD1 20 36889773 36951901 TRUE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMM50 22 43955421 44010531 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 17 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAMSN1 21 14485228 14658821 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAP130 2 127941217 128028120 FALSE 82 -0.261392512927958 50 127719285 130373216 1 2 1 1 2 1 2653931 1 15 23 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAP18 13 21140514 21149084 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAP25 7 100572228 100573820 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAP30 4 173369969 173377532 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAP30BP 17 75667116 75708062 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAP30L 5 154445957 154461054 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAPCD1 6 31762799 31764851 FALSE 192 0.00493836391948355 77 31761776 31933922 0.252310779181821 4 NA 0.252310779181821 4 NA 172146 NA 16 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAPCD2 9 137062124 137070588 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAR1A 10 70147289 70170523 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAR1B 5 134601144 134649271 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SARAF 8 30063012 30083208 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SARDH 9 133663560 133739955 FALSE 306 -0.140346870455269 62 133636322 134157948 0.235629703240478 3 NA 0.235629703240478 3 NA 521626 NA 6 23 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SARM1 17 28364356 28404049 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SARNP 12 55752463 55817756 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SARS 1 109213918 109238169 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SARS2 19 38915266 38930896 FALSE 647 -0.439700824472697 39 38869641 39110047 NA 2 NA NA 2 NA 240406 NA 10 16 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SART1 11 65961689 65979828 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SART3 12 108522580 108561400 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 21 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SASH1 6 148272304 148552050 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 32 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SASH3 23 129779979 129795201 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SASS6 1 100083563 100132955 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAT1 23 23783173 23786226 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAT2 17 7626234 7627876 FALSE 540 -0.560247871447121 34 7559238 7654707 0.312402751065481 1 0 0.312402751065481 1 0 95469 1 12 6 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SATB1 3 18345387 18445588 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SATB2 2 199269500 199471266 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 12 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SATL1 23 85092287 85243961 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAV1 14 50632058 50668331 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 8 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAXO1 9 18858906 19049358 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAXO2 15 82262810 82284930 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SAYSD1 6 39104064 39115189 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SBDS 7 66987677 66995601 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SBF1 22 50445000 50475024 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 40 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SBF2 11 9778667 10294207 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 43 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SBK1 16 28292519 28323849 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SBK2 19 55529733 55537089 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SBK3 19 55540656 55545543 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 6 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SBNO1 12 123289109 123364843 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 33 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SBNO2 19 1107636 1174283 FALSE 587 0.217691882461168 93 1042394 1299919 0.39968910724052 4 1 0.39968910724052 4 1 257525 3 12 35 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SBSN 19 35523367 35528351 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 9 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SBSPON 8 73064540 73124088 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SC5D 11 121292453 121308694 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCAF1 19 49642125 49658642 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCAF11 12 45919131 45992120 FALSE 399 -0.399680623701767 39 45913072 46788611 NA 2 NA NA 2 NA 875539 NA 4 25 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCAF4 21 31671033 31732075 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCAF8 6 154733325 154834244 FALSE 224 -0.117433393604286 66 152211521 156776133 0.330876988437597 3 0 0.330876988437597 3 0 4564612 3 15 27 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCAI 9 124942608 125143506 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 20 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCAMP1 5 78360583 78479071 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCAMP2 15 74843730 74873365 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCAMP3 1 155255979 155262430 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCAMP4 19 1905214 1926013 FALSE 591 -0.292096165521122 44 1753671 2129102 0.213873728132233 2 0 0.213873728132233 2 0 375431 2 13 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCAMP5 15 74957219 75021496 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCAND1 20 35953617 35959472 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCAP 3 47413694 47477126 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 27 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCAPER 15 76347904 76905444 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 35 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCARA3 8 27633868 27676776 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 12 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCARA5 8 27869882 27992727 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 10 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCARB1 12 124776856 124882668 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCARB2 4 76158733 76234536 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCARF1 17 1633858 1645747 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCARF2 22 20424815 20437826 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCCPDH 1 246724047 246768137 FALSE 45 -0.259945689995748 51 245749557 247491500 NA 2 NA NA 2 NA 1741943 NA 13 12 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCD 10 100347124 100364834 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCD5 4 82629539 82798857 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCEL 13 77535674 77645263 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 32 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCFD1 14 30622112 30735812 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 25 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCFD2 4 52872982 53366075 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCG2 2 223596940 223602503 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 8 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCG3 15 51681353 51721031 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCG5 15 32641676 32697098 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCGB1A1 11 62405103 62423195 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCGB1C1 11 193080 194573 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 3 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCGB1D1 11 62190216 62193539 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCGB1D2 11 62242210 62244808 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCGB1D4 11 62296277 62299064 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCGB2A1 11 62208668 62213939 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCGB2A2 11 62270155 62273156 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCGB2B2 19 34593329 34675699 FALSE 639 -0.405297231811747 39 34430686 34943334 NA 2 NA NA 2 NA 512648 NA 7 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCGB3A1 5 180590103 180591540 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCGB3A2 5 147870682 147882191 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCGN 6 25652201 25701783 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCHIP1 3 159839861 159897360 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCIMP 17 5208961 5234860 FALSE 537 -0.704833888728741 29 5091667 5391656 0.39968910724052 1 0 0.39968910724052 1 0 299989 1 7 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCIN 7 12570577 12660179 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCLT1 4 128864921 129093607 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 27 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCLY 2 238060889 238099413 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 12 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCMH1 1 41027200 41242154 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCML1 23 17737449 17754988 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCML2 23 18239314 18354727 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 18 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCML4 6 107704104 107824317 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCN10A 3 38696807 38816217 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 37 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCN11A 3 38845769 38950561 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 36 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCN1A 2 165984641 166149214 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 38 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCN1B 19 35030466 35040449 FALSE 640 -0.147583171664558 62 34943608 35134626 0.235629703240478 3 NA 0.235629703240478 3 NA 191018 NA 8 7 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCN2A 2 165194993 165392310 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 39 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCN2B 11 118161951 118176673 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCN3A 2 165087522 165204067 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 38 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCN3B 11 123629187 123655244 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCN4A 17 63938554 63972918 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 33 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCN4B 11 118133377 118152888 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCN5A 3 38548057 38649673 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 40 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCN7A 2 166403573 166494326 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 34 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCN8A 12 51590266 51812864 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 40 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCN9A 2 166195185 166376001 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 38 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCNM1 1 151156664 151170297 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCNN1A 12 6346843 6377730 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCNN1B 16 23278231 23381299 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCNN1D 1 1280436 1292029 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 20 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCNN1G 16 23182715 23216883 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCO1 17 10672474 10698375 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCO2 22 50523568 50526439 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCOC 4 140257286 140385726 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCP2 1 52927229 53051703 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCP2D1 20 18813726 18814392 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 2 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCPEP1 17 56978105 57006768 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 13 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCRG1 4 173384701 173406380 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCRIB 8 143790920 143815379 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 36 7 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCRN1 7 29920103 29990289 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 8 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCRN2 17 47837692 47841333 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCRN3 2 174395730 174429575 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 10 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCRT1 8 144330565 144336281 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCRT2 20 661596 676179 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCT 11 626431 627143 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCTR 2 119439843 119525301 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCUBE1 22 43197283 43343388 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCUBE2 11 9019498 9138114 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 24 3 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCUBE3 6 35214419 35253079 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCX 8 144266560 144268481 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCYL1 11 65525077 65538704 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCYL2 12 100267140 100341724 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 21 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SCYL3 1 169849631 169894267 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 18 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDAD1 4 75940950 75990962 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDC1 2 20200797 20225433 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDC2 8 96493351 96611780 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDC3 1 30869467 30908761 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDC4 20 45325288 45348424 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDCBP 8 58552924 58582860 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDCBP2 20 1309909 1329239 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 10 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDCCAG8 1 243256034 243500092 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 21 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDE2 1 225982702 225999331 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDF2 17 28648356 28662189 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDF2L1 22 21642261 21644298 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDF4 1 1216908 1232031 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 9 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDHA 5 218241 256700 TRUE 159 -0.112173854210592 67 92307 223843 0.31995059840763 3 NA 0.31995059840763 3 NA 131536 NA 4 24 2 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDHAF1 19 35995199 35996315 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDHAF2 11 61430042 61447529 TRUE 351 -0.00270858795298945 77 61249834 61434618 0.252310779181821 4 NA 0.252310779181821 4 NA 184784 NA 10 13 2 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDHAF3 7 97116590 97181763 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDHAF4 6 70566917 70589569 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDHB 1 17018722 17054170 TRUE 16 0.136831934058324 84 16759339 18631648 0.243587385410565 5 2 0.243587385410565 5 2 1872309 3 15 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDHC 1 161314257 161375340 TRUE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDHD 11 112086773 112120013 TRUE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDK1 7 3301448 4269000 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 52 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDK2 17 73334384 73644089 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 53 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDR16C5 8 56300010 56320776 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDR39U1 14 24439766 24442905 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDR42E1 16 81988855 82011488 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDR9C7 12 56923154 56934405 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDS 12 113392445 113426301 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SDSL 12 113422237 113438276 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEBOX 17 28364268 28365244 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC11A 15 84669538 84716716 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC11C 18 59139477 59158836 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 6 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC13 3 10293131 10321178 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC14L1 17 77088749 77217101 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 18 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC14L2 22 30396857 30425317 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC14L3 22 30447959 30472049 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 13 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC14L4 22 30488913 30505711 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 13 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC14L5 16 4958317 5019158 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 19 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC14L6 22 30522799 30546682 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC16A 9 136440096 136483759 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 43 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC16B 1 177923956 177984303 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 28 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC22A 3 123201927 123274130 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC22B 1 120150898 120176515 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC22C 3 42547969 42601080 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC23A 14 39031919 39109646 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 21 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC23B 20 18507482 18561415 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 19 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC23IP 10 119892711 119944658 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 20 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC24A 5 134648789 134727823 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC24B 4 109433772 109540896 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 27 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC24C 10 73744384 73772161 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 23 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC24D 4 118722823 118838683 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 23 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC31A 4 82818661 82901166 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC31B 10 100486642 100519864 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 28 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC61A1 3 128051641 128071683 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC61A2 10 12129637 12169961 FALSE 314 0.0797787605968275 82 10796933 12825599 0.298111653356898 4 NA 0.298111653356898 4 NA 2028666 NA 10 14 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC61B 9 99222064 99230615 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC61G 7 54752250 54759974 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC62 3 169966635 169998373 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEC63 6 107867756 107958189 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 21 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SECISBP2 9 89318506 89359662 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SECISBP2L 15 48988476 49046563 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SECTM1 17 82321024 82334074 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEH1L 18 12947133 12987536 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEL1L 14 81471549 81533861 FALSE 460 0.12444651269489 86 81145505 88469683 0.360033220093454 4 NA 0.360033220093454 4 NA 7324178 NA 10 22 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEL1L2 20 13849247 13996443 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 19 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEL1L3 4 25747427 25863760 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELE 1 169722641 169764705 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 13 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELENBP1 1 151364302 151372733 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELENOF 1 86862445 86914424 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELENOH 11 57741250 57743554 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELENOI 2 26308547 26395891 FALSE 56 0.00177645496183448 77 25244133 26472685 0.252310779181821 4 NA 0.252310779181821 4 NA 1228552 NA 12 31 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELENOK 3 53884410 53891988 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELENOM 22 31104772 31120069 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELENON 1 25800176 25818224 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 12 3 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELENOO 22 50200979 50217616 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 12 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELENOP 5 42799880 42887392 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELENOS 15 101270817 101277500 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELENOT 3 150602875 150630445 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELENOV 19 39515113 39520686 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 7 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELENOW 19 47778572 47784686 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 4 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELL 1 169690667 169711698 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELP 1 169588849 169630193 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SELPLG 12 108622277 108633959 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEM1 7 96481626 96709891 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA3A 7 83955777 84492724 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA3B 3 50267558 50277546 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA3C 7 80742538 80922359 FALSE 236 0.496193817902199 104 78017165 81770105 0.397448435712946 6 NA 0.397448435712946 6 NA 3752940 NA 6 20 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA3D 7 84995553 85186855 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA3E 7 83363238 83649113 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA3F 3 50155045 50189075 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 19 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA3G 3 52433053 52445085 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA4A 1 156147366 156177752 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA4B 15 90160604 90229679 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA4C 2 96859716 96870757 FALSE 74 -0.129279957310398 64 96646499 97245420 0.313405470508204 3 1 0.313405470508204 3 1 598921 2 10 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA4D 9 89360787 89498130 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 22 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA4F 2 74654228 74683853 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 16 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA4G 10 100969518 100985871 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 21 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA5A 5 9035026 9546075 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 25 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA5B 3 122909082 123028605 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 27 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA6A 5 116443616 116574934 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 23 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA6B 19 4542593 4559808 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 19 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA6C 1 151131685 151146664 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA6D 15 47184101 47774223 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 24 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMA7A 15 74409289 74433958 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 16 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMG1 20 45206997 45209772 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEMG2 20 45221300 45224458 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SENP1 12 48042898 48106308 FALSE 402 1.053712508772 116 47973141 48045294 0.397448435712946 10 NA 0.397448435712946 10 NA 72153 NA 2 17 1 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SENP2 3 185582496 185633551 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SENP3 17 7561875 7571969 FALSE 540 -0.560247871447121 34 7559238 7654707 0.312402751065481 1 0 0.312402751065481 1 0 95469 1 12 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SENP3-EIF4A1 17 7563287 7578715 FALSE 540 -0.560247871447121 34 7559238 7654707 0.312402751065481 1 0 0.312402751065481 1 0 95469 1 12 22 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SENP5 3 196867856 196934714 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SENP6 6 75601509 75718278 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SENP7 3 101324205 101513241 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 26 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SENP8 15 72114258 72143688 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPHS1 10 13317424 13348298 FALSE 315 0.228244116357697 94 12828838 14820149 0.39968910724052 4 NA 0.39968910724052 4 NA 1991311 NA 13 9 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPHS2 16 30443631 30446181 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPSECS 4 25120014 25160442 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPT1 16 30378133 30395991 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPT10 2 109542982 109614206 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPT11 4 76949703 77040384 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPT12 16 4777669 4788521 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 9 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPT14 7 55793544 55862789 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 9 0 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPT2 2 241315100 241354027 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 14 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPT3 22 41969475 41998221 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPT4 17 58520250 58540818 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 16 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPT5 22 19714464 19724224 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPT5-GP1BB 22 19717220 19724772 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPT6 23 119615724 119693370 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPT7 7 35800932 35907105 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPT8 5 132750817 132807241 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEPT9 17 77280569 77500596 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 19 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERAC1 6 158109515 158168280 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 16 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERBP1 1 67407810 67430415 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERF1B 5 70025247 70043113 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERF2 15 43777087 43802589 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 21 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERGEF 11 17788048 18013162 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERHL2 22 42553617 42574382 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERINC1 6 122443354 122471822 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERINC2 1 31409565 31434680 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 14 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERINC3 20 44496221 44522109 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERINC4 15 43794162 43800221 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 13 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERINC5 5 80111651 80256079 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERP1 3 150541994 150603228 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 19 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERP2 13 44373665 44397714 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINA1 14 94376747 94390693 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINA10 14 94280455 94293271 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINA11 14 94442464 94452790 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINA12 14 94487274 94517844 FALSE 463 -0.464555355125233 39 94463259 95086236 NA 2 NA NA 2 NA 622977 NA 8 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINA3 14 94612377 94624055 FALSE 463 -0.464555355125233 39 94463259 95086236 NA 2 NA NA 2 NA 622977 NA 8 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINA4 14 94561091 94569913 FALSE 463 -0.464555355125233 39 94463259 95086236 NA 2 NA NA 2 NA 622977 NA 8 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINA5 14 94561442 94593120 FALSE 463 -0.464555355125233 39 94463259 95086236 NA 2 NA NA 2 NA 622977 NA 8 16 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINA6 14 94304248 94323394 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINA7 23 106032442 106038738 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINA9 14 94462717 94479689 FALSE 463 -0.464555355125233 39 94463259 95086236 NA 2 NA NA 2 NA 622977 NA 8 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINB1 6 2832332 2842006 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 7 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINB10 18 63897174 63936111 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 13 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINB11 18 63647579 63726432 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 16 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINB12 18 63556160 63567011 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINB13 18 63586989 63604639 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 9 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINB2 18 63871692 63903890 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINB3 18 63655197 63661963 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINB4 18 63637259 63644298 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINB5 18 63476761 63505085 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 7 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINB6 6 2948159 2972165 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINB7 18 63752935 63805376 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINB8 18 63969925 64019779 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 9 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINB9 6 2887266 2903280 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINC1 1 173903804 173917378 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPIND1 22 20773879 20787720 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 8 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINE1 7 101127089 101139266 FALSE 243 -0.216974721306157 57 101087510 101616208 0.158317833115363 3 NA 0.158317833115363 3 NA 528698 NA 13 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINE2 2 223975112 224039319 FALSE 103 0.153439494900873 86 223878656 225408986 0.360033220093454 4 NA 0.360033220093454 4 NA 1530330 NA 8 12 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINE3 13 51335773 51364735 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINF1 17 1761959 1777574 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINF2 17 1742836 1755268 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPING1 11 57597387 57614853 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINH1 11 75562056 75572783 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINI1 3 167735243 167825568 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERPINI2 3 167441789 167479004 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERTAD1 19 40421592 40426025 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 3 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERTAD2 2 64631621 64751005 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERTAD3 19 40440844 40444705 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERTAD4 1 210232799 210246631 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERTM1 13 36673912 36697839 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SERTM2 23 111511662 111522399 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SESN1 6 108986437 109094819 TRUE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 13 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SESN2 1 28259527 28282491 TRUE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SESN3 11 95165513 95232541 TRUE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SESTD1 2 179101692 179264790 FALSE 93 0.0177648223479793 77 178905448 179191867 0.252310779181821 4 NA 0.252310779181821 4 NA 286419 NA 2 17 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SET 9 128683424 128696400 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETBP1 18 44680173 45068510 FALSE 575 0.704801540732652 110 41955285 45736573 0.397448435712946 7 4 0.397448435712946 7 4 3781288 3 6 50 2 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETD1A 16 30957294 30984664 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETD1B 12 121804180 121832584 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 30 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETD2 3 47016429 47163967 TRUE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 55 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETD3 14 99397746 99480889 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETD4 21 36034541 36079389 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 17 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETD5 3 9397615 9479240 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 31 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETD6 16 58515479 58521181 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETD7 4 139495941 139606699 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETD9 5 56909260 56925532 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETDB1 1 150926263 150964744 TRUE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 33 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETDB2 13 49444374 49495003 TRUE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 18 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETMAR 3 4303304 4317567 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETSIP 1 92074533 92075441 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SETX 9 132261356 132354985 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 43 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEZ6 17 28954901 29006440 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEZ6L 22 26169474 26383597 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SEZ6L2 16 29871159 29899547 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SF1 11 64764606 64778786 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SF3A1 22 30331988 30356947 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SF3A2 19 2236504 2248679 FALSE 593 -0.414090744354779 39 2233974 2403179 NA 2 NA NA 2 NA 169205 NA 11 10 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SF3A3 1 37956975 37990921 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SF3B1 2 197389784 197435091 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 46 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SF3B2 11 66050729 66069308 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SF3B3 16 70523788 70577670 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 26 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SF3B4 1 149923317 149928344 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SF3B5 6 144094881 144095573 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SF3B6 2 24067584 24076443 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFI1 22 31488688 31618586 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 34 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFMBT1 3 52903572 53046750 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 21 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFMBT2 10 7158624 7411486 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFN 1 26863138 26864457 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFPQ 1 35176378 35193148 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFR1 10 104122058 104126385 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFRP1 8 41261958 41309497 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFRP2 4 153780592 153789120 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFRP4 7 37905932 38025695 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFRP5 10 97766751 97771952 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFSWAP 12 131711081 131799737 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 23 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFT2D1 6 166319728 166342591 FALSE 228 -0.0936034159017556 66 165280135 167136462 0.330876988437597 3 0 0.330876988437597 3 0 1856327 3 12 8 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFT2D2 1 168225938 168253025 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFT2D3 2 127701508 127705242 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 3 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFTA2 6 30931353 30955636 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 21 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFTA3 14 36473288 36513829 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFTPA1 10 79610939 79615455 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 6 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFTPA2 10 79555852 79560402 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFTPB 2 85657314 85668741 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 11 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFTPC 8 22156913 22164479 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFTPD 10 79937740 79982614 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 9 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFXN1 5 175477062 175529742 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 10 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFXN2 10 102714538 102743492 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFXN3 10 101031234 101041244 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFXN4 10 119140767 119165667 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SFXN5 2 72942036 73075619 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGCA 17 50164214 50175931 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGCB 4 52020706 52038482 FALSE 145 -0.255465332866297 51 48565705 52745352 NA 2 NA NA 2 NA 4179647 NA 10 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGCD 5 155870344 156767788 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGCE 7 94524204 94656572 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 31 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGCG 13 23180952 23325165 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGCZ 8 14089864 15238339 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGF29 16 28553915 28591790 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGIP1 1 66533383 66748299 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 29 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGK1 6 134169246 134318112 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 31 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGK2 20 43558968 43588237 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGK3 8 66667596 66862022 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 19 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGK494 17 28607964 28614200 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGMS1 10 50305586 50625163 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 7 0 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGMS2 4 107824563 107915047 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGO1 3 20160593 20186292 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGO2 2 200510008 200583782 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGPL1 10 70815961 70881173 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGPP1 14 63684214 63728039 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGPP2 2 222424517 222560948 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 7 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGSH 17 80206716 80220923 FALSE 570 -0.251638265228374 50 80089734 80476396 1 2 1 1 2 1 386662 1 9 13 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGSM1 22 24806169 24927578 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 27 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGSM2 17 2337498 2381058 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 26 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGSM3 22 40370591 40410289 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGTA 19 2754714 2783371 FALSE 595 -0.450163878767581 39 2732975 3094339 NA 2 NA NA 2 NA 361364 NA 12 10 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SGTB 5 65665928 65723035 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH2B1 16 28846600 28874212 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH2B2 7 102285091 102321711 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH2B3 12 111405948 111451623 TRUE 420 1.09743664526736 116 111406043 111453794 0.397448435712946 10 NA 0.397448435712946 10 NA 47751 NA 2 25 1 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH2D1A 23 124227868 124373197 TRUE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 35 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH2D1B 1 162395266 162412138 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH2D2A 1 156806243 156816862 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH2D3A 19 6752160 6767588 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH2D3C 9 127738317 127778741 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 23 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH2D4A 8 19313617 19396218 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 10 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH2D4B 10 80537902 80646560 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH2D5 1 20719732 20732837 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH2D6 2 85418721 85437029 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH2D7 15 78077808 78104909 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3BGR 21 39445855 39515506 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3BGRL 23 81201943 81298547 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3BGRL2 6 79631283 79703659 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3BGRL3 1 26279176 26281522 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3BP1 22 37634654 37656119 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 20 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3BP2 4 2793023 2841098 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 16 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3BP4 2 234951973 235055714 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 14 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3BP5 3 15254853 15341368 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3BP5L 1 248810446 248826633 FALSE 49 -0.100969785741045 67 248650725 248918255 0.31995059840763 3 NA 0.31995059840763 3 NA 267530 NA 7 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3D19 4 151102751 151325632 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 28 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3D21 1 36306387 36324886 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3GL1 19 4360370 4400547 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 12 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3GL2 9 17579082 17797129 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3GL3 15 83447228 83618743 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3GLB1 1 86704570 86748184 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3GLB2 9 129007036 129028303 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3KBP1 23 19533975 19887601 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 21 0 TRUE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3PXD2A 10 103594027 103855543 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3PXD2B 5 172325000 172454523 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3RF1 4 169094256 169271105 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3RF2 5 145936579 146081791 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3RF3 2 109129348 109504632 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3TC1 4 8182072 8241803 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 27 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3TC2 5 148923639 149063163 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SH3YL1 2 217730 266398 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 12 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHANK1 19 50661827 50719450 FALSE 671 0.319009489173821 99 50630099 50948696 0.361681390833996 5 NA 0.361681390833996 5 NA 318597 NA 14 39 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHANK2 11 70467856 71252577 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 34 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHANK3 22 50674415 50733298 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHARPIN 8 144098633 144108124 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 16 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHB 9 37919134 38069211 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 9 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHBG 17 7613946 7633383 FALSE 540 -0.560247871447121 34 7559238 7654707 0.312402751065481 1 0 0.312402751065481 1 0 95469 1 12 16 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHC1 1 154962298 154974395 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHC2 19 416583 460996 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 14 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHC3 9 89005771 89178767 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHC4 15 48823735 48963444 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHCBP1 16 46580554 46621626 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHCBP1L 1 182899865 182953525 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHD 19 4278601 4290724 FALSE 600 -0.234869927794019 51 4175145 4306008 NA 2 NA NA 2 NA 130863 NA 7 8 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHE 1 154469772 154502113 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHF 15 45167214 45201175 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHH 7 155799986 155812273 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHISA2 13 26044597 26051031 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHISA3 4 42397839 42402487 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHISA4 1 201888680 201892306 FALSE 36 -0.0702600326825716 67 201211017 202010242 0.31995059840763 3 NA 0.31995059840763 3 NA 799225 NA 14 5 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHISA5 3 48467798 48504826 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHISA6 17 11241263 11564063 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHISA7 19 55428740 55442863 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHISA8 22 41909554 41914667 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHISA9 16 12901620 13240413 FALSE 518 0.520580734359524 105 11965400 14446991 0.397448435712946 6 NA 0.397448435712946 6 NA 2481591 NA 8 9 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHISAL1 22 44243667 44312851 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHISAL2A 1 52633344 52669683 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHISAL2B 5 64690308 64718090 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHKBP1 19 40576851 40591399 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 19 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHLD1 20 5750393 5863912 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHLD2 10 87094161 87191468 FALSE 329 -0.116680330790243 67 86927969 87862413 0.31995059840763 3 NA 0.31995059840763 3 NA 934444 NA 13 15 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHLD3 5 65624765 65630891 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 1 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHMT1 17 18327860 18363563 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHMT2 12 57229327 57234935 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHOC2 10 110919547 111013667 FALSE 336 0.281281646454176 97 110567687 113628982 0.39968910724052 4 NA 0.39968910724052 4 NA 3061295 NA 14 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHOX2 3 158095954 158106503 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHPK 17 3608262 3636322 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHPRH 6 145864245 145964423 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 38 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHQ1 3 72749277 72861914 TRUE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHROOM1 5 132822141 132830898 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 13 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHROOM2 23 9786456 9949443 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 25 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHROOM3 4 76435100 76783253 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHROOM4 23 50591647 50814302 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 23 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SHTN1 10 116881482 117126586 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SI 3 164978898 165078495 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 47 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIAE 11 124633113 124695707 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIAH1 16 48356364 48448402 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIAH2 3 150741127 150763477 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIAH3 13 45777243 45851736 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIDT1 3 113532296 113629578 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIDT2 11 117178733 117197445 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIGIRR 11 405716 417455 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 10 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIGLEC1 20 3686970 3707128 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 35 9 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIGLEC10 19 51410021 51417803 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 14 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIGLEC11 19 49948985 49961172 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIGLEC12 19 51491357 51501789 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 12 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIGLEC14 19 51642553 51646801 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIGLEC15 18 45825512 45844080 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIGLEC5 19 51611927 51645545 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 14 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIGLEC6 19 51519525 51531856 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIGLEC7 19 51142299 51153526 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIGLEC8 19 51450847 51458456 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 11 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIGLEC9 19 51124908 51136651 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 12 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIGLECL1 19 51246348 51269330 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIGMAR1 9 34634722 34637809 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIK2 11 111602391 111730853 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIK3 11 116843402 117098437 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIKE1 1 114769479 114780685 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIL1 5 138946720 139293557 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIM1 6 100385015 100464929 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIM2 21 36699133 36749917 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIMC1 5 176238367 176345991 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 18 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIN3A 15 75369379 75455842 FALSE 491 0.837128527237426 113 75369526 75455718 0.397448435712946 8 NA 0.397448435712946 8 NA 86192 NA 1 49 2 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIN3B 19 16829400 16880353 FALSE 629 -0.412926938873791 39 16377140 16841876 NA 2 NA NA 2 NA 464736 NA 12 24 1 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SINHCAF 12 31280584 31327058 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIPA1 11 65638097 65650930 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIPA1L1 14 71320449 71741229 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 33 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIPA1L2 1 232397965 232561558 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 32 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIPA1L3 19 37907228 38208372 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 32 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIRPA 20 1894167 1940592 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIRPB1 20 1563521 1620061 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 12 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIRPB2 20 1470741 1491587 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 7 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIRPD 20 1534251 1558843 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIRPG 20 1629152 1657779 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 8 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIRT1 10 67884669 67918390 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIRT2 19 38878555 38899862 FALSE 647 -0.439700824472697 39 38869641 39110047 NA 2 NA NA 2 NA 240406 NA 10 16 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIRT3 11 215458 236931 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIRT4 12 120302316 120313249 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIRT5 6 13574529 13615158 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIRT6 19 4174109 4182604 FALSE 599 0.276554850290338 97 3959289 4175087 0.39968910724052 4 NA 0.39968910724052 4 NA 215798 NA 7 10 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIRT7 17 81911939 81921323 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIT1 9 35649295 35650950 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIVA1 14 104753100 104768494 FALSE 470 -0.28238273283378 51 103746376 104759488 NA 2 NA NA 2 NA 1013112 NA 11 4 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIX1 14 60643415 60658259 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 5 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIX2 2 45005161 45009430 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIX3 2 44941898 44946077 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIX4 14 60709528 60724348 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 11 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIX5 19 45764785 45769226 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SIX6 14 60508951 60512850 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 5 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SKA1 18 50374995 50394173 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SKA2 17 59109951 59155269 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SKA3 13 21153595 21176602 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SKAP1 17 48133440 48430275 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SKAP2 7 26667062 26995239 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 12 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SKI 1 2228695 2310119 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SKIDA1 10 21513478 21526368 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SKIL 3 170357678 170396835 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SKIV2L 6 31959080 31969755 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 28 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SKOR1 15 67819704 67834561 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 18 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SKOR2 18 47206322 47251603 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 16 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SKP1 5 134148935 134177038 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SKP2 5 36151989 36184319 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLA 8 133036724 133103054 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLA2 20 36612318 36646216 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLAIN1 13 77697854 77764242 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLAIN2 4 48341322 48426212 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLAMF1 1 160608100 160647295 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLAMF6 1 160485030 160523262 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLAMF7 1 160739057 160754821 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLAMF8 1 159826750 159837249 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLAMF9 1 159951492 159954254 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLBP 4 1692800 1712555 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 8 1 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC10A1 14 69775417 69797289 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC10A2 13 103043998 103066846 FALSE 441 -0.133025597356164 67 102840913 109206723 0.31995059840763 3 NA 0.31995059840763 3 NA 6365810 NA 12 7 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC10A3 23 154487306 154490690 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC10A4 4 48483343 48489196 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC10A5 8 81693607 81696174 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC10A6 4 86823468 86849263 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC10A7 4 146253975 146521964 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC11A1 2 218382029 218396894 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC11A2 12 50979401 51028566 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC12A1 15 48178438 48304078 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC12A2 5 128083766 128189688 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 29 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC12A3 16 56865207 56915850 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 27 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC12A4 16 67943474 67969601 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 28 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC12A5 20 46021690 46060152 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 28 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC12A6 15 34229996 34338060 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 27 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC12A7 5 1050376 1112035 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 26 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC12A8 3 125082636 125212864 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC12A9 7 100826820 100867009 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 20 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC13A1 7 123113531 123199986 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC13A2 17 28473293 28497781 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC13A3 20 46557823 46684467 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC13A4 7 135681237 135729258 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC13A5 17 6684713 6713567 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC14A1 18 45687025 45752520 FALSE 575 0.704801540732652 110 41955285 45736573 0.397448435712946 7 4 0.397448435712946 7 4 3781288 3 6 9 3 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC14A2 18 45212995 45683686 FALSE 575 0.704801540732652 110 41955285 45736573 0.397448435712946 7 4 0.397448435712946 7 4 3781288 3 6 20 6 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC15A1 13 98683801 98752654 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC15A2 3 121894089 121944102 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 22 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC15A3 11 60937084 60952530 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC15A4 12 128793191 128823983 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC15A5 12 16188485 16277685 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC16A1 1 112911847 112957013 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC16A10 6 111087503 111231194 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 11 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC16A11 17 7041630 7043923 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC16A12 10 89430299 89556641 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC16A13 17 7036075 7040121 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 7 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC16A14 2 230034974 230068999 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC16A2 23 74421461 74533917 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 10 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC16A3 17 82228397 82261129 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC16A4 1 110362848 110391082 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC16A5 17 75087727 75106162 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC16A6 17 68267026 68291267 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC16A7 12 59596067 59789855 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC16A8 22 38078134 38084093 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC16A9 10 59650761 59736002 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC17A1 6 25782897 25832059 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC17A2 6 25912754 25930726 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC17A3 6 25833066 25882286 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC17A4 6 25754699 25781191 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC17A5 6 73593379 73654155 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC17A6 11 22338097 22379503 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC17A7 19 49429401 49442360 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC17A8 12 100357079 100422059 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 14 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC17A9 20 62952647 62969585 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC18A1 8 20144855 20183206 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 16 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC18A2 10 117241073 117279430 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC18A3 10 49610301 49612720 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC18B1 6 132769370 132813339 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC19A1 21 45493572 45544411 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 32 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC19A2 1 169463909 169486003 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC19A3 2 227683763 227718031 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC1A1 9 4490444 4587469 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 13 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC1A2 11 35251205 35420063 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC1A3 5 36606355 36688334 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC1A4 2 64988477 65023865 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC1A5 19 46774883 46788594 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC1A6 19 14950034 15022990 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 22 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC1A7 1 53087179 53142632 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC20A1 2 112645857 112663827 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC20A2 8 42416475 42541926 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A1 6 160121789 160158718 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 12 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A10 11 63137867 63369718 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A11 11 64555626 64572875 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A12 11 64590641 64602353 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 13 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A13 3 38265812 38278757 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A14 3 38282294 38318575 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A15 1 115976498 116070054 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 13 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A16 6 110424687 110476641 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 13 2 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A17 14 23346306 23352912 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A18 11 2899721 2925246 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 11 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A18AS 11 2887780 2903740 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A2 6 160171061 160277638 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A23 6 3268962 3457022 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A24 11 63079940 63144221 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A25 11 63163776 63229652 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A3 6 160348268 160452581 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A31 16 89195761 89201664 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 7 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A4 5 132294443 132344206 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 11 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A5 5 132369752 132395614 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A6 11 62936385 62984983 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A7 6 43295694 43305538 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A8 11 62989154 63015839 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC22A9 11 63369789 63410294 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC23A1 5 139367196 139384553 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC23A2 20 4852356 5010293 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC23A3 2 219161465 219170095 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 13 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC24A1 15 65611366 65660995 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC24A2 9 19507452 19786928 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC24A3 20 19212646 19722937 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 18 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC24A4 14 92322581 92501483 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC24A5 15 48120972 48142672 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A1 22 19175575 19178830 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A10 17 81712236 81721016 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 12 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A11 17 4937130 4940251 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A12 2 171784370 171999859 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 29 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A13 7 96120220 96322147 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A14 23 130339888 130373361 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A15 13 40789412 40810111 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A16 10 68477999 68527474 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A17 22 40769630 40819399 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A18 22 17563439 17590994 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A19 17 75272981 75289510 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A2 5 141302629 141304045 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A20 3 48856931 48898993 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A21 14 36678431 37172866 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 11 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A22 11 790475 798333 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A23 19 6436079 6465203 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A24 1 108134036 108200849 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A25 9 128068201 128109245 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A26 3 66133610 66388116 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 21 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A27 6 46652915 46678193 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A28 10 99610522 99620609 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A29 14 100291111 100306547 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A3 12 98593591 98606379 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A30 13 45393316 45418455 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A31 4 127730378 127774299 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A32 8 103398635 103415189 FALSE 273 0.0471800530858091 82 102651830 103432781 0.298111653356898 4 NA 0.298111653356898 4 NA 780951 NA 9 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A33 1 9539482 9585179 FALSE 7 0.18541391362799 90 8324498 9691530 0.275334878251284 5 NA 0.275334878251284 5 NA 1367032 NA 12 8 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A34 1 15736405 15741396 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A35 17 8287763 8295343 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A36 3 140941830 140980961 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A37 8 23528805 23575463 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A38 3 39383324 39397351 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A39 17 44319625 44324870 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A4 4 185143241 185150382 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A40 7 87833568 87876357 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A41 19 6426037 6433779 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A42 19 19063999 19112888 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A43 23 119399060 119454478 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A44 1 156193932 156212796 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A45 11 65375192 65383701 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A46 5 110738136 110765161 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A47 14 100323337 100330378 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A48 5 135579202 135889770 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A5 23 119468400 119471319 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 6 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A51 9 37879400 37904353 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A52 18 31759562 31760880 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC25A53 23 104099214 104157027 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC26A1 4 979073 993440 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 12 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC26A10 12 57619527 57626151 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC26A11 17 80219699 80253500 FALSE 570 -0.251638265228374 50 80089734 80476396 1 2 1 1 2 1 386662 1 9 20 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC26A2 5 149960737 149993455 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC26A3 7 107765467 107803225 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 21 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC26A4 7 107660635 107717809 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC26A5 7 103352730 103446177 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 30 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC26A6 3 48625723 48635493 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 21 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC26A7 8 91209494 91398152 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC26A8 6 35943514 36024868 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC26A9 1 205913048 205943460 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 23 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC27A1 19 17468769 17506168 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 13 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC27A2 15 50182196 50236395 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC27A3 1 153774354 153780157 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC27A4 9 128340646 128361470 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC27A5 19 58479512 58512413 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 19 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC27A6 5 128538013 129033642 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC28A1 15 84884654 84945796 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 19 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC28A2 15 45252230 45277845 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 17 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC28A3 9 84275457 84340683 FALSE 293 -0.328784635523128 44 81990823 84670815 0.213873728132233 2 0 0.213873728132233 2 0 2679992 2 12 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC29A1 6 44219505 44234151 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC29A2 11 66362521 66372214 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC29A3 10 71319258 71381423 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC29A4 7 5274369 5306870 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A1 1 42925375 42959176 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A10 20 46709487 46736347 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A11 22 23856703 23886309 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A12 6 133988697 134052636 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A13 12 39755021 40106089 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A14 12 7812512 7891148 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A2 3 170996348 171026750 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A3 12 7919230 7936275 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 10 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A4 17 7281667 7288257 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A4RG 20 63739861 63743505 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A5 1 9035107 9088478 FALSE 7 0.18541391362799 90 8324498 9691530 0.275334878251284 5 NA 0.275334878251284 5 NA 1367032 NA 12 13 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A6 9 133471095 133479137 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 12 0 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A7 1 9003300 9026345 FALSE 7 0.18541391362799 90 8324498 9691530 0.275334878251284 5 NA 0.275334878251284 5 NA 1367032 NA 12 13 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A8 9 127397138 127408424 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 12 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC2A9 4 9771153 10054936 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 20 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC30A1 1 211571568 211578742 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC30A10 1 219685427 219958647 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC30A2 1 26037252 26046133 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC30A3 2 27253684 27275817 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC30A4 15 45479611 45522807 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC30A5 5 69093646 69131069 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC30A6 2 32165841 32224379 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC30A7 1 100896076 100981753 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC30A8 8 116950273 117176714 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC30A9 4 41990472 42090457 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 18 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC31A1 9 113221562 113264492 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC31A2 9 113150942 113164137 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC32A1 20 38724462 38729372 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC33A1 3 155821024 155854456 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 9 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC34A1 5 177379235 177398848 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC34A2 4 25648011 25678748 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC34A3 9 137230757 137236554 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 13 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35A1 6 87470623 87512336 FALSE 201 -0.221189436484543 57 87265553 88929289 0.158317833115363 3 NA 0.158317833115363 3 NA 1663736 NA 12 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35A2 23 48903180 48911958 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 10 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35A3 1 99969351 100035637 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35A4 5 140564456 140569103 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35A5 3 112561709 112585577 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35B1 17 49700934 49709014 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35B2 6 44254096 44257890 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35B3 6 8411463 8435611 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35B4 7 134289332 134317051 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35C1 11 45804072 45813015 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35C2 20 46345980 46364458 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35D1 1 66999332 67054099 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35D2 9 96313444 96383710 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35D3 6 136922264 136925639 FALSE 218 -0.114845236609927 67 135285636 137194883 0.31995059840763 3 NA 0.31995059840763 3 NA 1909247 NA 10 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35E1 19 16549831 16572382 FALSE 629 -0.412926938873791 39 16377140 16841876 NA 2 NA NA 2 NA 464736 NA 12 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35E2A 1 1724838 1745999 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 7 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35E2B 1 1659529 1692728 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 8 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35E3 12 68746106 68793964 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35E4 22 30635652 30669016 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35F1 6 117907526 118317676 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35F2 11 107790991 107928293 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35F3 1 233904933 234324516 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35F4 14 57563922 57982194 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 13 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35F5 2 113705011 113756823 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 18 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35F6 2 26764284 26781231 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35G1 10 93893973 93956062 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35G2 3 136818647 136855892 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 6 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35G3 17 35192520 35194523 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35G4 18 11609596 11610612 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 4 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35G5 8 11330888 11332208 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC35G6 17 7481332 7483496 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC36A1 5 151437046 151492381 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC36A2 5 151314978 151347590 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC36A3 5 151276762 151303766 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC36A4 11 93144171 93197964 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC37A1 21 42496008 42581440 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC37A2 11 125063067 125090312 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 20 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC37A3 7 140293693 140404433 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 15 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC37A4 11 119024114 119030906 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC38A1 12 46183063 46270017 FALSE 399 -0.399680623701767 39 45913072 46788611 NA 2 NA NA 2 NA 875539 NA 4 16 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC38A10 17 81245000 81295547 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 22 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC38A11 2 164896186 164955525 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC38A2 12 46358189 46372867 FALSE 399 -0.399680623701767 39 45913072 46788611 NA 2 NA NA 2 NA 875539 NA 4 15 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC38A3 3 50205246 50221486 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC38A4 12 46764761 46832408 FALSE 399 -0.399680623701767 39 45913072 46788611 NA 2 NA NA 2 NA 875539 NA 4 16 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC38A5 23 48458537 48470256 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 15 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC38A6 14 60981114 61083733 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 18 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC38A7 16 58665109 58685104 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC38A8 16 84009667 84042636 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC38A9 5 55625845 55773194 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 22 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC39A1 1 153959099 153968184 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC39A10 2 195575977 195737702 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 14 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC39A11 17 72645949 73092712 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC39A12 10 17951839 18043292 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC39A13 11 47407132 47416501 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC39A14 8 22367249 22434129 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC39A2 14 20999255 21001871 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC39A3 19 2732204 2740152 FALSE 595 -0.450163878767581 39 2732975 3094339 NA 2 NA NA 2 NA 361364 NA 12 5 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC39A4 8 144409742 144416895 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 14 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC39A5 12 56230049 56237846 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC39A6 18 36108532 36129385 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 13 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC39A7 6 33200445 33204439 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC39A8 4 102251041 102431258 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC39A9 14 69398015 69462388 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 9 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC3A1 2 44275458 44321494 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 13 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC3A2 11 62856102 62888875 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC40A1 2 189560579 189583758 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC41A1 1 205789093 205813748 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC41A2 12 104802553 104958744 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 12 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC41A3 3 126006355 126101561 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC43A1 11 57484534 57515786 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC43A2 17 1569267 1628886 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 16 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC43A3 11 57406954 57427580 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC44A1 9 105244622 105439171 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC44A2 19 10602457 10644559 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 21 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC44A3 1 94820342 94895246 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC44A4 6 31863192 31879046 FALSE 192 0.00493836391948355 77 31761776 31933922 0.252310779181821 4 NA 0.252310779181821 4 NA 172146 NA 16 20 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC44A5 1 75202131 75611116 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 25 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC45A1 1 8317826 8344167 FALSE 6 -1.618022087249 11 8011953 8318135 0.397448435712946 0 0 0.397448435712946 0 0 306182 0 2 16 3 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC45A2 5 33944616 33984730 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC45A3 1 205657851 205680459 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 63 8 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC45A4 8 141207166 141308305 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC46A1 17 28394756 28407197 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC46A2 9 112878920 112890913 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC46A3 13 28700064 28718970 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC47A1 17 19495385 19579034 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC47A2 17 19678288 19718979 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 19 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC48A1 12 47753916 47782753 FALSE 401 0.570076889856971 105 47720770 47968206 0.397448435712946 6 NA 0.397448435712946 6 NA 247436 NA 6 6 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC49A3 4 681829 689441 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC4A1 17 44248385 44268141 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 21 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC4A10 2 161424332 161985282 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 31 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC4A11 20 3227417 3239559 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 21 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC4A1AP 2 27663471 27694976 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC4A2 7 151057210 151076527 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 28 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC4A3 2 219627327 219641980 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 28 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC4A4 4 71062667 71572087 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC4A5 2 74216242 74343414 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 28 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC4A7 3 27372721 27484420 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC4A8 12 51391317 51515763 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC4A9 5 140360202 140375143 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC50A1 1 155135344 155138857 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC51A 3 196211487 196243178 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 14 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC51B 15 65045370 65053396 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC52A1 17 5032600 5052009 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC52A2 8 144354135 144361286 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 18 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC52A3 20 760080 776015 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 9 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC5A1 22 32043032 32113029 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC5A10 17 18950345 19022595 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 32 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC5A11 16 24845841 24911628 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC5A12 11 26667019 26723427 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 16 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC5A2 16 31483002 31490860 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC5A3 21 34073570 34106262 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC5A4 22 32218476 32255341 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC5A5 19 17871973 17895174 FALSE 633 -0.0653644831439953 67 17843737 18149705 0.31995059840763 3 NA 0.31995059840763 3 NA 305968 NA 8 16 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC5A6 2 27199587 27212958 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC5A7 2 107986523 108013994 FALSE 78 -0.410137368612735 39 106158011 108293668 NA 2 NA NA 2 NA 2135657 NA 8 10 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC5A8 12 101155493 101210407 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 16 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC5A9 1 48222685 48248644 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A1 3 10992186 11039249 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A11 3 10816200 10940733 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 15 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A12 12 190077 214570 FALSE 375 0.00440437382068143 77 66864 894588 0.252310779181821 4 NA 0.252310779181821 4 NA 827724 NA 8 15 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A13 12 220621 262873 FALSE 375 0.00440437382068143 77 66864 894588 0.252310779181821 4 NA 0.252310779181821 4 NA 827724 NA 8 15 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A14 23 116436622 116461458 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 16 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A15 12 84859488 84913615 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A16 19 49289638 49325225 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A17 1 110150486 110202202 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 16 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A18 5 1225355 1246189 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A19 5 1201595 1225117 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A2 16 55655604 55706192 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A20 3 45755450 45796535 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A3 5 1392790 1445430 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 16 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A4 17 30194319 30236002 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A5 11 20599400 20659285 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 18 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A6 3 14402576 14489349 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 16 1 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A7 5 150189957 150222788 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A8 23 153688099 153696593 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC6A9 1 43991500 44031467 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 24 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC7A1 13 29509410 29595688 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 14 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC7A10 19 33208664 33225850 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC7A11 4 138164097 138242349 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC7A13 8 86214052 86321146 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC7A14 3 170459584 170586074 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC7A2 8 17497088 17570573 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 15 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC7A3 23 70925582 70931125 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 12 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC7A4 22 21028718 21032840 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 10 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC7A5 16 87830023 87869488 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC7A6 16 68264516 68301823 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC7A6OS 16 68284503 68310946 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC7A7 14 22773222 22829820 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC7A8 14 23125295 23183674 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 15 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC7A9 19 32830509 32869766 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC8A1 2 40097270 40611053 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 20 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC8A2 19 47428017 47472168 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 16 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC8A3 14 70044217 70189070 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 16 1 TRUE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC8B1 12 113298759 113359493 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9A1 1 27098815 27166981 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9A2 2 102619707 102711318 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 16 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9A3 5 470458 524332 FALSE 160 0.207920496709617 94 224566 833800 0.39968910724052 4 NA 0.39968910724052 4 NA 609234 NA 9 21 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9A3R1 17 74748652 74769353 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9A3R2 16 2025356 2039026 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 12 1 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9A4 2 102473303 102533972 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 16 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9A5 16 67237683 67272190 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 27 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9A6 23 135973841 136047269 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 19 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9A7 23 46599252 46759172 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 19 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9A8 20 49812713 49892242 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9A9 3 143265222 143848531 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 16 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9B1 4 102885048 103019739 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9B2 4 103019868 103085829 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9C1 3 112140887 112294258 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLC9C2 1 173500464 173603094 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 29 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLCO1A2 12 21264600 21419594 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 18 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLCO1B1 12 21131202 21239246 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 15 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLCO1B3 12 20810702 20916911 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLCO1B7 12 20962768 21092745 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 13 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLCO1C1 12 20695355 20753386 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 17 6 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLCO2A1 3 133928145 134052184 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 17 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLCO2B1 11 75100563 75206549 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 16 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLCO3A1 15 91853695 92172435 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLCO4A1 20 62642445 62685785 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLCO4C1 5 102233986 102296549 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLCO5A1 8 69667047 69835064 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLCO6A1 5 102371782 102499016 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 14 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLF1 5 94618347 94739436 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 28 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLF2 10 100912569 100965136 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 28 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLFN11 17 35350305 35373701 TRUE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLFN12 17 35411060 35433283 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLFN12L 17 35464249 35537861 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLFN13 17 35435096 35448837 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 13 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLFN14 17 35548125 35558098 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLFN5 17 35243036 35273655 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 14 2 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLFNL1 1 41015597 41023237 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLIRP 14 77708071 77761104 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 18 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLIT1 10 96998038 97185920 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 42 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLIT2 4 20253260 20620561 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 49 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLIT3 5 168661733 169301129 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 40 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLITRK1 13 83877205 83882393 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLITRK2 23 145817832 145829856 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLITRK3 3 165186720 165197109 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLITRK4 23 143622790 143635777 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLITRK5 13 87672615 87696272 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLITRK6 13 85792787 85806683 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLK 10 103967201 104029233 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 24 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLMAP 3 57755450 57929168 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLN 11 107707378 107719693 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLPI 20 45252239 45254564 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLTM 15 58879045 58933653 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLU7 5 160401641 160421711 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLURP1 8 142740944 142742411 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLURP2 8 142764338 142769844 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLX1A 16 30193887 30197561 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLX1B 16 29454501 29458219 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLX4 16 3581181 3611598 TRUE 514 0.622835549580881 107 3565001 3966951 0.397448435712946 7 NA 0.397448435712946 7 NA 401950 NA 6 37 3 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SLX4IP 20 10435303 10636829 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMAD1 4 145481194 145558079 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMAD2 18 47808957 47931146 TRUE 577 1.03400398157847 115 47809193 47896787 0.397448435712946 10 NA 0.397448435712946 10 NA 87594 NA 1 126 3 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMAD3 15 67063763 67195195 TRUE 489 0.961149926990278 114 66781496 67200256 0.397448435712946 9 NA 0.397448435712946 9 NA 418760 NA 2 45 6 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMAD4 18 51028394 51085045 TRUE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMAD5 5 136132845 136188747 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMAD6 15 66702228 66782848 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 8 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMAD7 18 48919853 48952052 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMAD9 13 36844831 36920765 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMAGP 12 51244558 51270890 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMAP1 6 70667776 70862015 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMAP2 1 40344850 40423326 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMARCA1 23 129446501 129523500 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 25 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMARCA2 9 1980290 2193624 TRUE 281 -0.150462187040168 62 711236 2838509 0.235629703240478 3 NA 0.235629703240478 3 NA 2127273 NA 8 86 4 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMARCA4 19 10960825 11079426 TRUE 615 0.780305232950539 112 10960884 11106721 0.397448435712946 8 NA 0.397448435712946 8 NA 145837 NA 2 64 8 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMARCA5 4 143513463 143557486 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMARCAD1 4 94207611 94291292 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 24 0 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMARCAL1 2 216412414 216483053 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMARCB1 22 23786931 23838008 TRUE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 31 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMARCC1 3 47585272 47782106 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 28 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMARCC2 12 56162983 56189567 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMARCD1 12 50084972 50100712 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMARCD2 17 63832081 63843065 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMARCD3 7 151238764 151277896 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 14 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMARCE1 17 40624962 40648864 TRUE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 56 6 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMC1A 23 53374149 53422728 TRUE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 52 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMC1B 22 45344063 45413619 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMC2 9 104094260 104141417 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 26 0 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMC3 10 110567691 110604636 TRUE 336 0.281281646454176 97 110567687 113628982 0.39968910724052 4 NA 0.39968910724052 4 NA 3061295 NA 14 38 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMC4 3 160399274 160434962 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 26 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMC5 9 70258962 70354888 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 27 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMC6 2 17663812 17800242 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 66 6 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMCHD1 18 2655738 2805017 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 49 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMCO1 3 196506877 196515366 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMCO2 12 27466810 27502185 FALSE 395 1.05231732428215 116 26055418 27646129 0.397448435712946 10 NA 0.397448435712946 10 NA 1590711 NA 13 8 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMCO3 12 14804650 14814182 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMCO4 11 93478472 93543508 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 1 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMCP 1 152878317 152885047 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMCR8 17 18315310 18328055 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMDT1 22 42079691 42084284 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMG1 16 18804853 18926454 TRUE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 72 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMG5 1 156249224 156282825 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMG6 17 2059839 2303771 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 27 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMG7 1 183472216 183598246 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 43 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMG8 17 59209400 59215247 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 13 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMG9 19 43727992 43754990 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM1 1 3772761 3775982 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM10 23 134990938 134992473 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM10L1 12 11171222 11176016 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 2 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM10L2A 23 135421943 135428074 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM10L2B 23 135094987 135098634 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM12 1 34712737 34859816 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM13 6 11094033 11138733 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM14 4 39546330 39639090 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM15 5 61157709 61162474 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 1 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM17 19 56643145 56655766 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM18 8 30638600 30646064 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM19 8 42541155 42555193 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM2 13 44143543 44161257 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM20 4 25861830 25929874 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM21 18 75409476 75427703 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM22 16 4788397 4796491 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM23 5 171782432 171796126 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM24 19 3473986 3480542 FALSE 597 -0.316308503877712 46 3155904 3648696 NA 2 NA NA 2 NA 492792 NA 16 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM26 20 18567347 18569563 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 2 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM27 9 32551144 32568621 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM29 6 34246380 34249470 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 4 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM3 5 150777946 150796734 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM30 7 113116718 113118613 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 1 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM31 4 164754064 164803795 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM32 5 136191468 136193134 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM35 11 118003634 118088299 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM4 3 52534013 52579237 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 24 2 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM5 17 75633434 75641404 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM6 17 75646243 75647977 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 1 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM7 19 16630751 16660442 FALSE 629 -0.412926938873791 39 16377140 16841876 NA 2 NA NA 2 NA 464736 NA 12 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM8 6 87322583 87399749 FALSE 201 -0.221189436484543 57 87265553 88929289 0.158317833115363 3 NA 0.158317833115363 3 NA 1663736 NA 12 9 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMIM9 23 154823348 154834662 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMKR1 7 129502479 129512932 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 2 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMLR1 6 130827406 130837135 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMN1 5 70925030 70953942 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMN2 5 70049612 70078522 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMNDC1 10 110290730 110304951 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMO 7 129188872 129213545 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 23 4 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMOC1 14 69854131 70032366 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 12 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMOC2 6 168441151 168673445 FALSE 230 -0.0331467567986683 71 168062029 170285618 0.212208033369562 4 0 0.212208033369562 4 0 2223589 4 11 14 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMOX 20 4120980 4187747 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 10 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMPD1 11 6390431 6394998 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 11 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMPD2 6 109440763 109443919 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMPD3 16 68358325 68448688 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMPD4 2 130151392 130182750 FALSE 82 -0.261392512927958 50 127719285 130373216 1 2 1 1 2 1 2653931 1 15 25 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMPDL3A 6 122789049 122809720 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMPDL3B 1 27934993 27959157 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMPX 23 21705972 21758163 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMR3A 4 70360761 70367158 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 3 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMR3B 4 70370093 70390244 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMS 23 21940573 21994835 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 11 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMTN 22 31064105 31104757 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMTNL1 11 57542641 57550274 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMTNL2 17 4583999 4608319 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 11 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMU1 9 33041764 33076659 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMUG1 12 54121277 54189008 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMURF1 7 99027438 99144100 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMURF2 17 64542295 64662068 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMYD1 2 88067780 88113387 FALSE 71 0.0815929456248537 82 88067910 95104630 0.298111653356898 4 NA 0.298111653356898 4 NA 7036720 NA 11 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMYD2 1 214281102 214337131 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMYD3 1 245749342 246507312 FALSE 45 -0.259945689995748 51 245749557 247491500 NA 2 NA NA 2 NA 1741943 NA 13 13 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMYD4 17 1779485 1830634 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 15 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SMYD5 2 73214222 73227237 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNAI1 20 49982999 49988886 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNAI2 8 48917604 48921740 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNAI3 16 88677682 88686493 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNAP23 15 42491233 42545356 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNAP25 20 10218830 10307418 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNAP29 22 20858983 20891218 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 6 1 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNAP47 1 227728539 227781231 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 18 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNAP91 6 83552880 83709691 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 30 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNAPC1 14 61762357 61796428 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 10 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNAPC2 19 7920316 7923250 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNAPC3 9 15422704 15465953 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNAPC4 9 136375577 136400168 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 30 6 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNAPC5 15 66490135 66497813 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNAPIN 1 153658654 153661830 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNCA 4 89724099 89838315 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNCAIP 5 122311354 122464219 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 26 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNCB 5 176620084 176630556 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 5 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNCG 10 86958618 86963260 FALSE 329 -0.116680330790243 67 86927969 87862413 0.31995059840763 3 NA 0.31995059840763 3 NA 934444 NA 13 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SND1 7 127652180 128092609 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 33 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNED1 2 240998838 241095568 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 40 4 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNF8 17 48929316 48945117 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNHG28 1 159834474 159873053 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 16 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNIP1 1 37534449 37554344 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNN 16 11668414 11679159 FALSE 517 -0.0362540617203195 72 11676092 11941161 0.211382613745547 4 NA 0.211382613745547 4 NA 265069 NA 6 2 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNORC 2 232857270 232878708 FALSE 106 0.545664806611778 105 232662878 232974659 0.397448435712946 6 NA 0.397448435712946 6 NA 311781 NA 5 5 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNPH 20 1266280 1309328 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRK 3 43286512 43424764 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRNP200 2 96274336 96305515 FALSE 73 0.130965048807663 86 96195440 96642849 0.360033220093454 4 NA 0.360033220093454 4 NA 447409 NA 10 47 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRNP25 16 53010 57669 FALSE 505 -0.300200862070701 46 47610 287135 NA 2 NA NA 2 NA 239525 NA 16 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRNP27 2 69893560 69905575 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRNP35 12 123457641 123473154 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRNP40 1 31259568 31296782 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRNP48 6 7590199 7611967 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRNP70 19 49085419 49108605 FALSE 667 -0.429532031730118 39 49016740 49154166 NA 2 NA NA 2 NA 137426 NA 17 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRPA 19 40750637 40765389 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRPA1 15 101281510 101295282 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRPB 20 2461634 2470853 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRPB2 20 16729961 16742563 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRPC 6 34757406 34773794 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRPD1 18 21612267 21633524 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRPD2 19 45687454 45692569 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 3 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRPD3 22 24555503 24609980 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRPE 1 203861603 203870550 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRPF 12 95858928 95903828 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 15 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRPG 2 70281362 70293771 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNRPN 15 24823637 24978723 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNTA1 20 33407955 33443892 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNTB1 8 120535745 120813273 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNTB2 16 69187129 69309052 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNTG1 8 49909789 50796691 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNTG2 2 950868 1367613 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 17 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNTN 3 63652668 63679020 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNU13 22 41673930 41690504 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNUPN 15 75598083 75626469 FALSE 492 -0.226543951235523 57 75468765 76202218 0.158317833115363 3 NA 0.158317833115363 3 NA 733453 NA 10 9 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNURF 15 24954986 24977850 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNW1 14 77717599 77761207 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 14 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX1 15 64094123 64146090 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX10 7 26291895 26374329 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 8 2 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX11 17 48103357 48123074 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX12 23 71056332 71073426 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX13 7 17790761 17940501 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 29 5 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX14 6 85505496 85594156 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 31 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX15 11 65027408 65040572 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX16 8 81799581 81842866 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX17 2 27370496 27377533 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX18 5 54517759 54546585 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 10 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX19 11 130875436 130916509 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX2 5 122774996 122830108 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 16 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX20 16 50666300 50681353 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX21 20 45833810 45843275 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX22 15 64151715 64157481 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX24 5 122843439 123029354 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX25 4 185204237 185370185 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 21 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX27 1 151612006 151699091 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX29 16 11976737 12574289 FALSE 518 0.520580734359524 105 11965400 14446991 0.397448435712946 6 NA 0.397448435712946 6 NA 2481591 NA 8 23 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX3 6 108211222 108261260 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX30 9 112750838 112881671 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX31 8 100572882 100663415 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 14 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX32 11 65833641 65856896 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX33 15 75647906 75662301 FALSE 492 -0.226543951235523 57 75468765 76202218 0.158317833115363 3 NA 0.158317833115363 3 NA 733453 NA 10 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX4 3 125446644 125520197 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX5 20 17941597 17968980 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX6 14 34561094 34630183 FALSE 449 -0.090252011740912 67 31387284 34807549 0.31995059840763 3 NA 0.31995059840763 3 NA 3420265 NA 14 14 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX7 1 98661701 98760500 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX8 7 2251770 2354318 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SNX9 6 157700387 157945077 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOAT1 1 179293714 179358680 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOAT2 12 53103518 53124538 FALSE 408 0.483867645866869 104 52675230 53105164 0.397448435712946 6 NA 0.397448435712946 6 NA 429934 NA 14 16 0 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOBP 6 107489958 107660167 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOCS1 16 11254405 11256200 TRUE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 7 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOCS2 12 93569814 93583487 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOCS3 17 78356778 78360077 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOCS4 14 55027230 55049488 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOCS5 2 46698952 46780245 FALSE 59 -0.32871660107588 46 46484402 47170815 NA 2 NA NA 2 NA 686413 NA 11 7 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOCS6 18 70288901 70330200 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOCS7 17 38352228 38405593 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOD1 21 31659622 31668931 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOD2 6 159669057 159762529 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOD3 4 24789912 24800842 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOGA1 20 36777442 36863686 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 27 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOGA3 6 127472794 127519191 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOHLH1 9 135693407 135699528 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOHLH2 13 36168208 36214615 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SON 21 33542618 33577481 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 36 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SORBS1 10 95311771 95561414 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 35 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SORBS2 4 185585444 185956652 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 33 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SORBS3 8 22544986 22575788 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 21 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SORCS1 10 106573663 107164534 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 30 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SORCS2 4 7192538 7742836 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 36 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SORCS3 10 104641101 105265235 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 30 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SORD 15 45023104 45077185 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SORL1 11 121452203 121633693 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 50 4 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SORT1 1 109309568 109397951 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOS1 2 38981396 39124345 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 57 10 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOS2 14 50117120 50231558 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 29 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOST 17 43753731 43758788 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOSTDC1 7 16461481 16530580 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 4 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOWAHA 5 132813587 132816797 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOWAHB 4 76894928 76898147 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOWAHC 2 109614334 109618990 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOWAHD 23 119758613 119760164 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX1 13 112067647 112070488 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX10 22 37970686 37987422 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX11 2 5692667 5701385 FALSE 51 1.20607402332156 118 5692535 5701369 0.397448435712946 11 NA 0.397448435712946 11 NA 8834 NA 1 33 2 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX12 20 325595 330224 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX13 1 204073115 204127743 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX14 3 137764284 137766338 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX15 17 7588178 7590170 FALSE 540 -0.560247871447121 34 7559238 7654707 0.312402751065481 1 0 0.312402751065481 1 0 95469 1 12 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX17 8 54457935 54460888 TRUE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX18 20 64047582 64049641 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX2 3 181711924 181714436 FALSE 128 0.146934569885818 86 179242975 181712000 0.360033220093454 4 NA 0.360033220093454 4 NA 2469025 NA 14 10 0 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX21 13 94709622 94712399 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX3 23 140502985 140505116 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX30 5 157625679 157671480 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX4 6 21592768 21598619 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX5 12 23529500 24562544 FALSE 392 1.89758378112465 125 23534339 23734778 0.397448435712946 20 NA 0.397448435712946 20 NA 200439 NA 1 18 0 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX6 11 15966449 16739591 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX7 8 10723768 10730512 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX8 16 981808 986979 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SOX9 17 72121020 72126420 TRUE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SP1 12 53380176 53416446 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SP100 2 230415942 230544090 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SP110 2 230167293 230225729 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 21 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SP140 2 230203110 230313215 TRUE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 37 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SP140L 2 230327184 230403732 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SP2 17 47896150 47928957 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 11 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SP3 2 173906459 173965702 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 13 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SP4 7 21428034 21514822 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 14 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SP5 2 170715351 170718078 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SP6 17 47844908 47855874 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SP7 12 53326575 53345315 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SP8 7 20782283 20786886 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 7 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SP9 2 174334946 174338492 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPA17 11 124673798 124697518 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPAAR 9 35909483 35937153 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPACA1 6 88047789 88066832 FALSE 201 -0.221189436484543 57 87265553 88929289 0.158317833115363 3 NA 0.158317833115363 3 NA 1663736 NA 12 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPACA3 17 32970376 32997877 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPACA4 19 48606743 48607714 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPACA5B 23 48130657 48132613 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 1 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPACA6 19 51689128 51712387 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPACA7 13 112376319 112434689 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPACA9 9 132878027 132890201 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPAG1 8 100157906 100259278 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 23 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPAG11A 8 7847876 7868867 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPAG11B 8 7442684 7463674 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 3 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPAG16 2 213284379 214410501 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 16 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPAG17 1 117953861 118185223 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 55 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPAG4 20 35615892 35621049 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPAG5 17 28577565 28599279 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPAG6 10 22345445 22454224 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPAG7 17 4959226 4967872 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPAG8 9 35808045 35812272 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPAG9 17 50962174 51120865 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 34 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPAM1 7 123925237 123971414 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPANXC 23 141241463 141242496 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 2 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPANXD 23 141697411 141698739 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 2 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPANXN1 23 145246828 145256112 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPANXN2 23 143711955 143721423 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPANXN3 23 143508735 143517475 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPANXN4 23 143025918 143034702 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPANXN5 23 52796144 52798101 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 2 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPARC 5 151661096 151687165 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPARCL1 4 87473335 87531061 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 14 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPART 13 36301638 36370180 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPAST 2 32063547 32157637 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 18 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA1 1 84506300 84566194 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA12 3 57060441 57075432 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA13 13 23979805 24307074 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA16 3 172889358 173141268 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA17 1 217631324 217871696 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA18 4 52051331 52097292 FALSE 145 -0.255465332866297 51 48565705 52745352 NA 2 NA NA 2 NA 4179647 NA 10 13 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA19 11 133840631 133845538 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA2 20 49903391 49915508 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA20 17 50543058 50555852 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 18 6 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA21 1 16387117 16437424 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 16 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA22 17 3440019 3513852 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA24 5 139396563 139404088 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA25 20 45886489 45887635 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA2L 16 89696343 89701705 FALSE 534 -0.234744649087081 51 89587069 89729295 NA 2 NA NA 2 NA 142226 NA 8 7 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA3 2 230990324 231025055 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA31A1 9 39355669 39361959 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 10 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA31A3 9 66986304 66992583 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 11 4 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA31A6 9 42183659 42189882 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 16 2 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA31A7 9 61190003 61196280 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA31D1 9 81988772 81995256 FALSE 292 -2.09777576429256 5 81930147 81990477 0.397448435712946 0 0 0.397448435712946 0 0 60330 0 3 21 1 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA31D3 9 81943586 81950038 FALSE 292 -2.09777576429256 5 81930147 81990477 0.397448435712946 0 0 0.397448435712946 0 0 60330 0 3 4 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA31D4 9 81928514 81934948 FALSE 292 -2.09777576429256 5 81930147 81990477 0.397448435712946 0 0 0.397448435712946 0 0 60330 0 3 4 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA31E1 9 87882826 87888899 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 19 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA32 17 45254393 45262112 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 8 0 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA33 16 89657802 89671272 FALSE 534 -0.234744649087081 51 89587069 89729295 NA 2 NA NA 2 NA 142226 NA 8 3 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA4 4 176184638 176195671 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 6 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA45 1 212830141 212847649 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA46 1 162373203 162376870 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA48 7 50096036 50159830 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 11 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA5 4 122923074 123319450 FALSE 154 -0.104605871325062 67 122922586 122947484 0.31995059840763 3 NA 0.31995059840763 3 NA 24898 NA 2 19 0 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA5L1 15 45402331 45421419 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA6 1 48295372 48472208 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA6L 9 4553386 4666674 FALSE 282 -0.0316991097404615 72 3225129 5713908 0.211382613745547 4 NA 0.211382613745547 4 NA 2488779 NA 17 28 6 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA7 14 88384924 88470350 FALSE 460 0.12444651269489 86 81145505 88469683 0.360033220093454 4 NA 0.360033220093454 4 NA 7324178 NA 10 20 5 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA8 15 96783389 96785615 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATA9 5 95652181 95698711 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATC1 8 144012414 144047085 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATC1L 21 46161148 46184476 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATS1 6 44342660 44377167 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATS2 12 49366584 49527424 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPATS2L 2 200305881 200482263 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 14 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPC24 19 11131520 11155808 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPC25 2 168834132 168913371 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 24 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPCS1 3 52704955 52711146 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPCS2 11 74949247 74979031 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPCS3 4 176319964 176332245 FALSE 157 0.0251014068813815 77 176192989 182751835 0.252310779181821 4 NA 0.252310779181821 4 NA 6558846 NA 7 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPDEF 6 34537802 34556333 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 7 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPDL1 5 169583634 169604778 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPDYA 2 28782517 28850611 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPDYC 11 65170154 65173244 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPDYE1 7 44000889 44010122 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPDYE16 7 76531319 76541459 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPDYE2 7 102551232 102562308 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPDYE2B 7 102650325 102661398 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 2 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPDYE3 7 100307702 100322196 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPDYE4 17 8753106 8758559 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPDYE5 7 75493625 75504304 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPDYE6 7 102347206 102356444 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPECC1 17 20009344 20319026 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 22 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPECC1L 22 24270817 24417740 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPECC1L-ADORA2A 22 24270898 24442356 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 27 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPEF1 20 3777504 3781448 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPEF2 5 35617844 35814611 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 42 7 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPEG 2 219434846 219498287 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 68 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPEM1 17 7420360 7421632 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPEM2 17 7425615 7427568 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 7 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPEN 1 15847864 15940460 TRUE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 60 0 TRUE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPERT 13 45702311 45714559 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 8 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPESP1 15 68818221 68946811 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 7 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPG11 15 44562696 44663678 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 46 1 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPG21 15 64963021 64990310 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPG7 16 89490719 89557768 FALSE 533 -0.192592276429899 57 89508498 89586624 0.158317833115363 3 NA 0.158317833115363 3 NA 78126 NA 3 19 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPHAR 1 229304857 229305504 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPHK1 17 76376584 76387860 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPHK2 19 48619291 48630717 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPHKAP 2 227979950 228181645 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 27 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPI1 11 47354860 47378576 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPIB 19 50418938 50431313 FALSE 670 -0.191579946531989 57 50417807 50629807 0.158317833115363 3 NA 0.158317833115363 3 NA 212000 NA 10 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPIC 12 101475421 101486997 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPICE1 3 113442718 113515187 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPIDR 8 47260575 47736306 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 21 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPIN1 9 88388419 88478694 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPIN2A 23 57134530 57137625 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPIN2B 23 57118551 57121546 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPIN3 23 56818298 56995827 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPIN4 23 63347228 63351344 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 3 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINDOC 11 63813388 63827718 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINK1 5 147824568 147831786 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINK13 5 148268180 148286254 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINK14 5 148169733 148175398 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINK2 4 56809860 56821742 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINK4 9 33218365 33248567 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINK5 5 148025683 148137289 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 34 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINK6 5 148202794 148215137 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINK7 5 148312419 148315922 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINK8 3 48306842 48328341 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINK9 5 148321203 148339849 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINT1 15 40844018 40858207 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINT2 19 38244035 38292614 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINT3 20 45512461 45515624 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPINT4 20 45722351 45725830 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPIRE1 18 12446512 12658134 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPIRE2 16 89818179 89871319 FALSE 535 0.126990432456591 86 89733549 90075852 0.360033220093454 4 NA 0.360033220093454 4 NA 342303 NA 12 18 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPN 16 29662979 29670876 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPNS1 16 28974221 28984548 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPNS2 17 4498838 4539035 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPNS3 17 4433688 4488208 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 15 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPO11 20 57329759 57343994 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPOCD1 1 31790422 31816051 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 22 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPOCK1 5 136975298 137598379 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPOCK2 10 72059035 72089032 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPOCK3 4 166733384 167234796 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPON1 11 13962689 14267884 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPON2 4 1166932 1208962 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPOP 17 49598884 49678234 TRUE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 28 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPOPL 2 138501801 138573547 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPOUT1 9 128819651 128829821 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 16 5 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPP1 4 87975650 87983426 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 9 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPP2 2 234050679 234077134 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPPL2A 15 50702266 50765808 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPPL2B 19 2328615 2354806 FALSE 593 -0.414090744354779 39 2233974 2403179 NA 2 NA NA 2 NA 169205 NA 11 15 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPPL2C 17 45844835 45847072 FALSE 562 -0.239849237512674 51 45395530 46066680 NA 2 NA NA 2 NA 671150 NA 8 8 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPPL3 12 120762510 120904371 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPR 2 72887360 72892158 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRED1 15 38252326 38357249 TRUE 478 0.784528466776882 112 38247915 38454136 0.397448435712946 8 NA 0.397448435712946 8 NA 206221 NA 2 39 3 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRED2 2 65310851 65432637 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRED3 19 38388421 38399587 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRN 10 133420666 133424572 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 2 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRR1A 1 152985231 152985500 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRR1B 1 153031202 153032900 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 1 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRR2A 1 153056113 153057537 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRR2B 1 153070224 153070840 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRR2D 1 153039725 153041931 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRR2E 1 153093135 153106184 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRR2F 1 153112114 153113515 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 1 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRR2G 1 153149582 153150869 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRR3 1 153001747 153003856 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRR4 1 152970666 152972574 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRTN 1 231337104 231355023 TRUE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRY1 4 123396795 123403760 FALSE 155 -0.704237669359932 29 122979275 125487575 0.39968910724052 1 0 0.39968910724052 1 0 2508300 1 4 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRY2 13 80335976 80340951 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRY4 5 142310427 142326455 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRYD3 12 53064316 53079420 FALSE 408 0.483867645866869 104 52675230 53105164 0.397448435712946 6 NA 0.397448435712946 6 NA 429934 NA 14 11 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRYD4 12 56468567 56479707 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPRYD7 13 49912706 49936490 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPSB1 1 9292880 9369532 FALSE 7 0.18541391362799 90 8324498 9691530 0.275334878251284 5 NA 0.275334878251284 5 NA 1367032 NA 12 4 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPSB2 12 6870935 6889358 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPSB3 16 1776712 1793700 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 24 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPSB4 3 141051402 141148611 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 4 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPTA1 1 158610706 158686715 FALSE 32 -0.643700144922936 29 158181711 158618068 0.39968910724052 1 0 0.39968910724052 1 0 436357 1 14 60 10 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPTAN1 9 128552558 128633662 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 60 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPTB 14 64746283 64879907 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 48 4 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPTBN1 2 54456285 54671445 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 47 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPTBN2 11 66685248 66729226 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 48 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPTBN4 19 40466241 40576464 FALSE 651 -0.29399302811106 44 40321893 40807785 0.213873728132233 2 0 0.213873728132233 2 0 485892 2 21 49 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPTBN5 15 41848144 41894077 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 77 9 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPTLC1 9 92000087 92115384 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPTLC2 14 77505997 77616773 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 13 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPTLC3 20 13008979 13169103 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 12 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPTSSA 14 34432789 34462356 FALSE 449 -0.090252011740912 67 31387284 34807549 0.31995059840763 3 NA 0.31995059840763 3 NA 3420265 NA 14 2 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPTSSB 3 161344792 161372880 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPTY2D1 11 18606401 18634791 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPTY2D1OS 11 18588781 18610255 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPX 12 21526307 21541249 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 10 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SPZ1 5 80319625 80321842 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SQLE 8 124998497 125022283 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SQOR 15 45631148 45691294 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SQSTM1 5 179806398 179838078 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRA1 5 140537340 140558252 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRARP 1 16004236 16008807 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 3 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRBD1 2 45388680 45612165 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 22 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRC 20 37344685 37406050 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 31 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRCAP 16 30698209 30741409 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 53 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRCIN1 17 38530016 38605930 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 24 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRD5A1 5 6633343 6674386 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 7 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRD5A2 2 31522480 31581067 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRD5A3 4 55346109 55373096 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SREBF1 17 17810399 17837002 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 23 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SREBF2 22 41833079 41907308 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SREK1 5 66139971 66183615 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SREK1IP1 5 64718144 64768685 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRF 6 43171299 43181507 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRFBP1 5 121961961 122075570 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRGAP1 12 63844293 64162221 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 26 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRGAP2 1 206203345 206464443 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRGAP2B 1 144887265 145095528 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRGAP2C 1 121184810 121392822 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRGAP3 3 8980591 9363053 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 26 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRGN 10 69088106 69104811 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRI 7 88205118 88226993 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRL 16 4189374 4242080 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRM 1 11054584 11060024 FALSE 10 -0.472587818930969 39 11046896 11690703 NA 2 NA NA 2 NA 643807 NA 11 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRMS 20 63540810 63547504 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRP14 15 40035739 40039188 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 6 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRP19 5 112861188 112898371 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRP54 14 34981957 35029567 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 15 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRP68 17 76038775 76072653 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 16 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRP72 4 56467336 56503681 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRP9 1 225777813 225790466 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRPK1 6 35832966 35921342 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRPK2 7 105110704 105399308 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 30 0 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRPK3 23 153776412 153785732 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 23 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRPRA 11 126262919 126269144 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRPRB 3 133784033 133825772 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 7 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRPX 23 38149336 38220924 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 10 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRPX2 23 100644166 100675788 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRR 17 2303383 2325260 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRRD 22 26483877 26494658 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRRM1 1 24631716 24673267 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRRM2 16 2752329 2772538 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 41 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRRM3 7 76201900 76287288 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRRM4 12 118981495 119163051 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRRM5 19 43596617 43614497 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 13 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRRT 7 100875111 100888664 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 21 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRSF1 17 58003360 58007346 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRSF10 1 23964804 23980927 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRSF11 1 70205682 70253052 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRSF12 6 89095959 89118081 FALSE 202 -0.0287117028264841 72 88941203 89712641 0.211382613745547 4 NA 0.211382613745547 4 NA 771438 NA 11 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRSF2 17 76734115 76737374 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRSF3 6 36594353 36605600 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRSF4 1 29147743 29181987 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRSF5 14 69726900 69772005 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 7 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRSF6 20 43457928 43464247 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRSF7 2 38743599 38751494 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRSF8 11 95067197 95071224 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRSF9 12 120461668 120469793 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SRXN1 20 646615 653370 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SS18 18 26016253 26091217 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SS18L1 20 62143795 62182484 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SS18L2 3 42581840 42595114 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSB 2 169791933 169812064 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSBP1 7 141738321 141787922 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 14 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSBP2 5 81413021 81751797 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 17 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSBP3 1 54225432 54413479 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSBP4 19 18418864 18434562 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSC4D 7 76389334 76409695 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSC5D 19 55488404 55519098 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 28 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSH1 12 108778192 108857590 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 23 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSH2 17 29625938 29930276 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSH3 11 67303448 67312607 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSMEM1 7 130206344 130216844 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSNA1 9 137188647 137190370 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSPN 12 26121991 26299290 FALSE 395 1.05231732428215 116 26055418 27646129 0.397448435712946 10 NA 0.397448435712946 10 NA 1590711 NA 13 14 1 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSPO 7 149776042 149833979 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 120 9 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSR1 6 7268306 7347446 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 12 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSR2 1 156009048 156020959 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSR3 3 156540140 156555184 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 5 3 TRUE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSR4 23 153793516 153798505 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSRP1 11 57325985 57335877 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 17 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSSCA1 11 65570430 65573942 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SST 3 187668906 187670399 FALSE 137 0.632133845014845 107 187371138 189902345 0.397448435712946 7 NA 0.397448435712946 7 NA 2531207 NA 7 2 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSTR1 14 38207999 38213067 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 5 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSTR2 17 73165012 73176633 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSTR3 22 37204238 37212322 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 6 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSTR4 20 23035386 23036812 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSTR5 16 1078781 1080142 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSU72 1 1541673 1574869 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 5 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSUH2 3 8619400 8745040 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 14 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSX1 23 48255317 48267444 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSX2IP 1 84643707 84690803 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSX3 23 48346428 48356707 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSX4 23 48383516 48393347 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 1 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSX4B 23 48402078 48411910 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 2 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSX5 23 48186220 48196763 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SSX7 23 52644090 52654900 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST13 22 40824535 40857022 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST14 11 130159562 130210376 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST18 8 52110839 52460959 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 26 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST20 15 79898840 79923702 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST20-MTHFS 15 79845150 79923754 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST3GAL1 8 133454848 133571940 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 7 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST3GAL2 16 70375978 70439237 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST3GAL3 1 43705824 43931165 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST3GAL4 11 126355640 126440344 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST3GAL5 2 85837120 85905199 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST3GAL6 3 98732236 98821201 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 24 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST5 11 8693351 8910951 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 23 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST6GAL1 3 186930485 187078553 FALSE 136 0.193577617007497 90 186677783 187370824 0.275334878251284 5 NA 0.275334878251284 5 NA 693041 NA 10 7 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST6GAL2 2 106801600 106887108 FALSE 78 -0.410137368612735 39 106158011 108293668 NA 2 NA NA 2 NA 2135657 NA 8 10 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST6GALNAC1 17 76624761 76643838 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST6GALNAC2 17 76565379 76586956 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 9 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST6GALNAC3 1 76074719 76634601 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST6GALNAC4 9 127907886 127917038 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST6GALNAC5 1 76867441 77065711 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST6GALNAC6 9 127885321 127905408 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST7 7 116953238 117230103 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST7L 1 112523518 112620825 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST8SIA1 12 22063773 22437041 FALSE 391 0.0584319382106557 80 18648442 22685001 0.224978670039217 5 2 0.224978670039217 5 2 4036559 3 26 9 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST8SIA2 15 92393828 92468728 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST8SIA3 18 57350813 57371731 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST8SIA4 5 100806935 100903266 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST8SIA5 18 46667821 46759257 FALSE 576 0.0364578392160976 77 45739251 47803994 0.252310779181821 4 NA 0.252310779181821 4 NA 2064743 NA 21 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ST8SIA6 10 17318383 17454330 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAB1 3 52495338 52524495 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 68 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAB2 12 103587273 103766727 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 70 6 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAC 3 36380344 36548007 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAC2 17 39210536 39225872 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAC3 12 57243453 57251193 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAG1 3 136336233 136752403 TRUE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 51 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAG2 23 123960212 124422664 TRUE 720 0.272623247386123 97 123712866 124123962 0.39968910724052 2 NA 0.39968910724052 2 NA 411096 NA 3 116 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAG3 7 100177563 100221488 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 39 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAM 10 17644125 17715914 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAM2 2 152116801 152175992 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAMBP 2 73828916 73873659 FALSE 65 -0.681372041727781 29 73385994 73862307 0.39968910724052 1 0 0.39968910724052 1 0 476313 1 6 11 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAMBPL1 10 88879734 88975153 FALSE 331 0.160746647112512 87 88274961 89024998 0.206344716318008 6 3 0.206344716318008 6 3 750037 3 10 23 0 FALSE AMP (BALANCED) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAP1 4 67558728 67607337 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAP2 19 4324043 4342786 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAR 8 38143649 38151265 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STARD10 11 72754729 72793681 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STARD13 13 33103135 33350630 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 21 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STARD3 17 39637065 39663484 FALSE 550 0.588438690170753 105 39461721 39864123 0.397448435712946 6 NA 0.397448435712946 6 NA 402402 NA 11 14 2 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STARD3NL 7 38178222 38230671 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STARD4 5 111496033 111512590 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STARD5 15 81309053 81324183 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STARD6 18 54324358 54357964 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STARD7 2 96184859 96208825 FALSE 72 -0.297431743288301 44 95106429 96195026 0.213873728132233 2 0 0.213873728132233 2 0 1088597 2 15 9 0 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STARD8 23 68647666 68725842 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 22 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STARD9 15 42575659 42720981 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 71 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAT1 2 190964358 191020960 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 23 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAT2 12 56341597 56360155 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAT3 17 42313324 42388568 FALSE 556 0.751442855285402 112 42199493 42316878 0.397448435712946 7 NA 0.397448435712946 7 NA 117385 NA 3 33 0 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAT4 2 191029576 191151596 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 26 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAT5A 17 42287547 42311943 FALSE 556 0.751442855285402 112 42199493 42316878 0.397448435712946 7 NA 0.397448435712946 7 NA 117385 NA 3 28 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAT5B 17 42199168 42276707 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 31 0 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAT6 12 57095408 57132139 FALSE 410 0.98695157340253 114 57078680 57129111 0.397448435712946 9 NA 0.397448435712946 9 NA 50431 NA 4 31 3 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STATH 4 69995930 70002570 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAU1 20 49113339 49188367 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STAU2 8 73420369 73747708 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STBD1 4 76306026 76311599 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STC1 8 23841915 23854807 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STC2 5 173314713 173329503 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STEAP1 7 90154375 90164829 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STEAP1B 7 22419444 22727613 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 10 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STEAP2 7 90167590 90238137 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STEAP3 2 119223831 119265652 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STEAP4 7 88270892 88306891 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STH 17 45999250 45999694 FALSE 562 -0.239849237512674 51 45395530 46066680 NA 2 NA NA 2 NA 671150 NA 8 2 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STIL 1 47250139 47314147 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 26 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STIM1 11 3854527 4093210 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 18 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STIM2 4 26857678 27025381 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STIMATE 3 52836219 52897596 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STIP1 11 64185272 64204543 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK10 5 172042073 172188386 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 22 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK11 19 1177558 1228435 TRUE 587 0.217691882461168 93 1042394 1299919 0.39968910724052 4 1 0.39968910724052 4 1 257525 3 12 24 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK11IP 2 219597860 219616451 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 27 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK16 2 219245455 219250337 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK17A 7 43582758 43650713 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK17B 2 196133566 196176503 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK19 6 31971091 31982821 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK24 13 98445185 98577940 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK25 2 241492674 241509730 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 15 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK26 23 132023265 132075943 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK3 8 98371228 98942827 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK31 7 23710167 23832513 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 26 3 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK32A 5 147234963 147387852 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK32B 4 5051442 5500998 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK32C 10 132207492 132331847 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 18 7 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK33 11 8391868 8594289 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 15 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK35 20 2101611 2177038 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK36 2 218672026 218702716 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 28 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK38 6 36493892 36547470 FALSE 197 0.3612229624611 101 36136678 37175236 0.397448435712946 5 NA 0.397448435712946 5 NA 1038558 NA 18 13 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK38L 12 27243968 27325959 FALSE 395 1.05231732428215 116 26055418 27646129 0.397448435712946 10 NA 0.397448435712946 10 NA 1590711 NA 13 13 1 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK39 2 167954020 168248141 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK4 20 44966474 45079959 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STK40 1 36339624 36385896 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STKLD1 9 133376367 133406096 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 19 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STMN1 1 25884181 25906991 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STMN2 8 79610814 79666175 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STMN3 20 63639705 63657682 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STMN4 8 27235323 27258420 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STMND1 6 17102258 17131372 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STMP1 7 135662496 135693418 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STN1 10 103882542 103918205 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STOM 9 121338988 121370304 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STOML1 15 73978923 73994622 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STOML2 9 35099776 35103195 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STOML3 13 38965925 38991066 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STON1 2 48529383 48598513 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STON1-GTF2A1L 2 48529925 48776517 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 38 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STON2 14 81260656 81436465 FALSE 460 0.12444651269489 86 81145505 88469683 0.360033220093454 4 NA 0.360033220093454 4 NA 7324178 NA 10 15 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STOX1 10 68827541 68895432 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STOX2 4 183797692 184023526 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STPG1 1 24356999 24416934 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STPG2 4 97184093 98143240 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 11 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STPG3 9 137251261 137253483 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STPG4 2 47045538 47155378 FALSE 59 -0.32871660107588 46 46484402 47170815 NA 2 NA NA 2 NA 686413 NA 11 16 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STRA6 15 74179466 74212267 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 22 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STRA8 7 135231979 135258492 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STRADA 17 63682336 63741986 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STRADB 2 201387858 201480846 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STRAP 12 15882391 15903478 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STRBP 9 123109500 123268576 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 18 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STRC 15 43599563 43618800 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 21 5 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STRIP1 1 110031577 110074641 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STRIP2 7 129434433 129488399 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 23 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STRN 2 36843640 36966472 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 19 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STRN3 14 30893799 31026401 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 19 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STRN4 19 46719507 46746994 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 19 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STS 23 7219456 7354810 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 12 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STT3A 11 125591712 125625215 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STT3B 3 31532638 31637622 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STUB1 16 680224 682870 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STUM 1 226548800 226609214 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX10 19 13144058 13150383 FALSE 621 -0.225919342368309 57 13135243 13799725 0.158317833115363 3 NA 0.158317833115363 3 NA 664482 NA 8 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX11 6 144150526 144188370 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX12 1 27773183 27824452 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX16 20 58651253 58679526 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX16-NPEPL1 20 58651434 58715410 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 22 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX17 9 99906633 99970341 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX18 4 4415742 4542346 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX19 3 94014369 94028610 FALSE 122 -0.368296020240939 40 93874356 99795292 0.199360539125166 2 0 0.199360539125166 2 0 5920936 2 28 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX1A 7 73699206 73719672 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX1B 16 30989256 31010661 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX2 12 130789600 130839266 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX3 11 59713456 59805882 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX4 16 31032889 31042975 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX5 11 62806897 62832088 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX6 1 180972712 181023121 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX7 6 132445867 132513198 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STX8 17 9250471 9576591 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STXBP1 9 127579370 127696027 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 20 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STXBP2 19 7636881 7647873 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 18 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STXBP3 1 108746674 108809526 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STXBP4 17 54968727 55173632 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 17 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STXBP5 6 147204425 147390476 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 30 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STXBP5L 3 120908072 121424761 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 29 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STXBP6 14 24809656 25050297 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STYK1 12 10618939 10674318 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STYX 14 52730180 52774998 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 11 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 STYXL1 7 75996338 76048004 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 8 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUB1 5 32531633 32604079 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUCLA2 13 47745736 48037968 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUCLG1 2 84423523 84460045 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 9 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUCLG2 3 67360460 67654614 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUCNR1 3 151873643 151884619 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUCO 1 172532349 172611833 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUDS3 12 118376380 118418031 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUFU 10 102503987 102633535 TRUE 334 0.693568044718264 111 102503918 102657271 0.397448435712946 7 NA 0.397448435712946 7 NA 153353 NA 2 39 7 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUGCT 7 40134977 40860763 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 15 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUGP1 19 19276018 19320844 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUGP2 19 18990888 19034023 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUGT1 13 52652709 52700909 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 14 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULF1 8 69466624 69660915 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULF2 20 47656348 47786616 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULT1A1 16 28605196 28623625 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULT1A2 16 28591943 28597109 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULT1A3 16 30199228 30204310 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 1 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULT1A4 16 29459889 29464976 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 1 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULT1B1 4 69721162 69787961 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULT1C2 2 108288639 108309915 FALSE 78 -0.410137368612735 39 106158011 108293668 NA 2 NA NA 2 NA 2135657 NA 8 7 1 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULT1C3 2 108247195 108265351 FALSE 78 -0.410137368612735 39 106158011 108293668 NA 2 NA NA 2 NA 2135657 NA 8 8 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULT1C4 2 108377911 108388057 FALSE 79 0.0303094967814047 74 108294295 111128755 0.246063395031215 4 2 0.246063395031215 4 2 2834460 2 22 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULT1E1 4 69841212 69860152 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULT2A1 19 47870466 47886397 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 6 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULT2B1 19 48552075 48599425 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULT4A1 22 43824509 43862503 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SULT6B1 2 37167820 37196598 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 7 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUMF1 3 3700814 4467281 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 25 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUMF2 7 56064002 56080670 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUMO1 2 202206180 202238608 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUMO2 17 75165586 75182983 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUMO3 21 44805617 44818779 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUMO4 6 149400227 149401292 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 2 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUN1 7 816615 896435 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 31 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUN2 22 38734725 38794143 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUN3 7 47987148 48029119 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUN5 20 32983773 33004433 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 13 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUOX 12 55997180 56006641 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUPT16H 14 21351472 21384266 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUPT20H 13 37009312 37059713 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 26 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUPT3H 6 44809317 45377953 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUPT4H1 17 58345175 58353093 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUPT5H 19 39436156 39476670 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 28 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUPT6H 17 28662091 28702684 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 37 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUPT7L 2 27650812 27663840 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUPV3L1 10 69180232 69209099 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SURF1 9 133351755 133356676 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SURF2 9 133356552 133361169 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SURF4 9 133361449 133376166 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SURF6 9 133328774 133336398 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUSD1 9 112040785 112175408 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUSD2 22 24181259 24189110 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUSD3 9 93058688 93085138 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUSD4 1 223220819 223364202 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUSD5 3 33150042 33219215 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUSD6 14 69611596 69715142 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUV39H1 23 48695554 48709012 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 9 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUV39H2 10 14878820 14904315 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SUZ12 17 31937018 32001045 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 32 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SV2A 1 149903318 149917882 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SV2B 15 91099950 91301309 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SV2C 5 76083172 76353939 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SVBP 1 42807052 42817252 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SVEP1 9 110365251 110579880 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 65 9 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SVIL 10 29457338 29736781 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 43 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SVIP 11 22813799 22830299 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SVOP 12 108907741 109021240 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SVOPL 7 138594285 138701352 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SWAP70 11 9664077 9752991 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 13 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SWI5 9 128275379 128288990 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SWSAP1 19 11374685 11376951 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SWT1 1 185157080 185291765 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYAP1 23 16719632 16765336 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 9 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYBU 8 109573978 109691791 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 14 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYCE1 10 133553901 133569835 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYCE1L 16 77199397 77213215 FALSE 530 0.0863261484312413 82 76522085 80684905 0.298111653356898 4 NA 0.298111653356898 4 NA 4162820 NA 12 11 4 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYCE2 19 12898786 12919276 FALSE 620 0.246971120530574 97 12876151 13116391 0.39968910724052 4 NA 0.39968910724052 4 NA 240240 NA 12 7 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYCE3 22 50551112 50562905 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYCN 19 39202831 39204266 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYCP1 1 114854803 114995370 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 31 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYCP2 20 59863563 59933655 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 46 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYCP2L 6 10886831 10979320 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 28 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYCP3 12 101728648 101739472 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYDE1 19 15107403 15114988 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYDE2 1 85156873 85201046 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYF2 1 25222679 25232502 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYK 9 90801787 90898549 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 27 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYMPK 19 45815410 45863290 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 30 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYN1 23 47571898 47619943 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 24 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYN2 3 12004402 12191400 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 20 1 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYN3 22 32512552 33058372 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNC 1 32680360 32703596 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNCRIP 6 85607785 85643792 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNDIG1 20 24469199 24666616 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNDIG1L 14 74405893 74426102 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 4 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNE1 6 152121684 152637801 FALSE 223 0.236892508535766 96 150395481 152208217 0.39968910724052 4 1 0.39968910724052 4 1 1812736 3 10 196 7 TRUE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNE2 14 63852983 64226433 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 134 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNE3 14 95407266 95475836 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNE4 19 36003299 36008793 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNGAP1 6 33419661 33457541 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 32 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNGR1 22 39349925 39385588 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNGR2 17 78168558 78173527 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNGR3 16 1989660 1994275 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNGR4 19 48364395 48376376 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNJ1 21 32628759 32728048 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 36 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNJ2 6 157981887 158099176 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 32 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNJ2BP 14 70366496 70417061 FALSE 456 -0.528554564313879 34 70049041 70667652 0.312402751065481 1 0 0.312402751065481 1 0 618611 1 8 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNJ2BP-COX16 14 70326064 70417074 FALSE 456 -0.528554564313879 34 70049041 70667652 0.312402751065481 1 0 0.312402751065481 1 0 618611 1 8 8 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNM 15 99098217 99135593 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 21 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNPO 5 150601080 150659220 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNPO2 4 118850688 119061247 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 20 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNPO2L 10 73644881 73663803 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNPR 3 63228315 63616921 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYNRG 17 37514797 37609496 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYP 23 49187804 49200259 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYPL1 7 106090503 106112576 FALSE 247 -0.18197294596649 62 105388711 106112210 0.235629703240478 3 NA 0.235629703240478 3 NA 723499 NA 7 6 1 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYPL2 1 109466628 109482137 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYS1 20 45361937 45376798 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYS1-DBNDD2 20 45363200 45410610 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT1 12 78863993 79452008 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT10 12 33374238 33439819 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT11 1 155859509 155885199 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT12 11 67006778 67050863 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT13 11 45240301 45286319 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT14 1 209938174 210171389 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT15 10 46578217 46594173 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT16 14 61811974 62112550 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 11 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT17 16 19167971 19268334 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT2 1 202590596 202710417 FALSE 37 0.422972367154532 103 202010393 202741677 0.397448435712946 5 NA 0.397448435712946 5 NA 731284 NA 9 9 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT3 19 50621307 50639827 FALSE 670 -0.191579946531989 57 50417807 50629807 0.158317833115363 3 NA 0.158317833115363 3 NA 212000 NA 10 11 3 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT4 18 43267878 43277650 FALSE 575 0.704801540732652 110 41955285 45736573 0.397448435712946 7 4 0.397448435712946 7 4 3781288 3 6 8 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT5 19 55171199 55180441 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT6 1 114089291 114153919 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT7 11 61515313 61581148 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT8 11 1828307 1837521 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 9 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYT9 11 7238778 7469042 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 10 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYTL1 1 27342020 27353937 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYTL2 11 85694224 85811159 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 22 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYTL3 6 158650014 158764876 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 16 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYTL4 23 100674491 100732123 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 16 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYTL5 23 38006582 38128819 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 17 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SYVN1 11 65121780 65134533 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SZRD1 1 16352575 16398145 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 5 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 SZT2 1 43389882 43454247 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 82 7 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAAR1 6 132644984 132646003 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAAR2 6 132617022 132624275 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAAR5 6 132588673 132589686 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAAR6 6 132570322 132571359 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAAR8 6 132552693 132553721 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAAR9 6 132538290 132539336 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAB1 22 39399741 39437060 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAB2 6 149218641 149411613 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 14 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAB3 23 30827442 30975084 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 12 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAC1 7 97731908 97740472 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAC3 12 57010000 57028883 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAC4 17 49838309 49848017 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TACC1 8 38728186 38853028 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 21 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TACC2 10 121989174 122254545 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 48 10 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TACC3 4 1721490 1745176 FALSE 142 0.0353806292410739 77 1699590 2008986 0.252310779181821 4 NA 0.252310779181821 4 NA 309396 NA 7 18 6 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TACO1 17 63600872 63608365 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TACR1 2 75046463 75199700 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TACR2 10 69403903 69416867 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TACR3 4 103586031 103719816 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TACSTD2 1 58575423 58577773 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TADA1 1 166856510 166876327 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TADA2A 17 37406874 37479730 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TADA2B 4 7041899 7057952 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TADA3 3 9779860 9793011 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF1 23 71366239 71532374 FALSE 715 -0.659931446909816 29 71291831 71671196 0.39968910724052 0 NA 0.39968910724052 0 0 379365 0 7 50 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF10 11 6606296 6612667 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 16 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF11 6 34877462 34888089 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF12 1 28589323 28643085 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF13 1 109062486 109076002 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF15 17 35713791 35864615 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 65 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF1A 1 222557902 222589933 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF1B 2 9843354 9934416 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 15 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF1C 16 84177847 84187070 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF1D 11 93729948 93784391 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF1L 9 32629454 32635669 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 22 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF2 8 119730775 119832863 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 29 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF3 10 7818504 8016627 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 13 2 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF4 20 61953469 62065810 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF4B 18 26225936 26391685 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 18 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF5 10 103367967 103389065 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF5L 1 229593111 229626047 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF6 7 100107070 100119841 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 15 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF6L 11 62771303 62787342 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF7 5 141260225 141320821 FALSE 176 -0.619616124561786 30 140795336 141629954 0.37140042022976 1 0 0.37140042022976 1 0 834618 1 58 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF7L 23 101268253 101293057 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF8 6 42050513 42087461 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF9 5 69364743 69370013 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAF9B 23 78129748 78139706 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAGAP 6 159034468 159045152 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAGLN 11 117199321 117204782 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAGLN2 1 159918107 159925732 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAGLN3 3 111998664 112013887 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAL1 1 47216290 47232220 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAL2 9 105662457 105663112 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TALDO1 11 747329 765024 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAMM41 3 11790442 11846919 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 9 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TANC1 2 158968671 159232659 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 34 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TANC2 17 63009556 63427699 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 35 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TANGO2 22 20017014 20065926 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TANGO6 16 68843604 69085180 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 22 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TANK 2 161136908 161236221 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAOK1 17 29390464 29551904 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAOK2 16 29973641 29992261 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 27 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAOK3 12 118149801 118372945 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAP1 6 32845209 32853978 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 14 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAP2 6 32821833 32838780 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 13 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAPBP 6 33299694 33314387 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 11 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAPBPL 12 6451690 6466517 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 15 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAPT1 4 16160505 16227410 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 15 0 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TARBP1 1 234391313 234479103 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 34 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TARBP2 12 53500921 53506431 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TARDBP 1 11012344 11026420 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TARM1 19 54069895 54081365 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TARS 5 33440696 33469539 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 20 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TARS2 1 150487364 150507609 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TARSL2 15 101653598 101724604 FALSE 504 -0.755474588997147 27 101650010 101922696 0.255173832388045 0 0 0.255173832388045 0 0 272686 0 5 20 2 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS1R1 1 6555181 6579757 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 12 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS1R2 1 18839599 18859682 FALSE 17 -1.08917150076189 19 18634420 18857583 0.39968910724052 0 0 0.39968910724052 0 0 223163 0 3 14 3 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS1R3 1 1331314 1335306 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 12 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R1 5 9628997 9712378 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R10 12 10825317 10826358 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R13 12 10907926 10909562 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R14 12 10937406 11171573 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 33 9 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R16 7 122994704 122995700 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R19 12 11021619 11022620 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R20 12 10996495 10997875 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R3 7 141764097 141765197 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R30 12 11132958 11134644 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R31 12 11030387 11031407 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R38 7 141972631 141973773 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R39 7 143183419 143184435 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R4 7 141778442 141780819 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 4 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R40 7 143222037 143223079 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R41 7 143477873 143478796 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 4 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R42 12 11185993 11186937 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R43 12 11091287 11092313 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 3 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R46 12 11061365 11062294 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R5 7 141790217 141791367 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R50 12 10985913 10986912 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R60 7 143443453 143444409 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 3 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R7 12 10801532 10802627 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R8 12 10806051 10807293 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAS2R9 12 10809094 10810168 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 4 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TASP1 20 13389392 13638940 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAT 16 71565660 71577130 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 11 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TATDN1 8 124488485 124539458 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TATDN2 3 10248023 10281218 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TATDN3 1 212791828 212816626 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAX1BP1 7 27739331 27844564 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 18 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAX1BP3 17 3662896 3668682 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TAZ 23 154411518 154421726 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBATA 10 70771239 70785401 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D1 4 37891087 38139175 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 27 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D10A 22 30291990 30327046 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D10B 16 30357102 30370264 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D10C 11 67403915 67410089 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D12 10 94402504 94535930 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D13 9 128787204 128810432 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 13 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D14 4 6909242 7033118 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 19 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D15 12 71839707 71927248 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D16 17 79932343 80035848 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 17 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D17 19 49877425 49888749 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D19 4 26576437 26755351 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D2 9 98198999 98255721 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 18 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D20 20 435480 462553 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D21 15 73873608 73889214 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D22A 22 46762617 47175699 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D22B 6 37257772 37332970 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D23 3 100261000 100325251 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D24 16 2475051 2509560 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D25 23 48539457 48562609 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 11 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D26 17 15732247 15749192 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D28 17 18635006 18661950 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D29 17 30553502 30563493 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D2B 15 77984036 78077724 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D30 12 64780516 64881032 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D31 8 123041968 123152153 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 24 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D32 6 121079494 121334745 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 32 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D3B 17 36165681 36176636 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D3F 17 36428618 36439566 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D4 13 75283503 75482114 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 29 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D5 3 17157162 18444817 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 43 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D7 6 13266542 13328583 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 16 5 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D8 2 101007617 101252866 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 26 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D8B 23 106802680 106876145 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 26 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D9 4 140620765 140756120 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 25 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBC1D9B 5 179862066 179907859 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBCA 5 77691166 77868780 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBCB 19 36114289 36125947 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 10 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBCC 6 42744481 42746096 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBCCD1 3 186546073 186570543 FALSE 135 0.383017234579865 101 186047790 186677676 0.397448435712946 5 NA 0.397448435712946 5 NA 629886 NA 9 11 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBCD 17 82752064 82945922 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 48 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBCE 1 235328570 235452443 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBCEL 11 121024072 121090775 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBCK 4 106041599 106321495 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 26 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBK1 12 64451880 64502108 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 20 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBKBP1 17 47694081 47712050 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 12 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBL1X 23 9463295 9741037 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 18 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBL1XR1 3 177019340 177228000 TRUE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBL2 7 73567533 73578791 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBL3 16 1972037 1982933 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 26 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBP 6 170554302 170572870 FALSE 231 -0.348813635967544 46 170286311 170584601 NA 2 NA NA 2 NA 298290 NA 5 8 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBPL1 6 133952170 133990432 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBPL2 14 55413541 55456726 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 8 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBR1 2 161416094 161425870 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBRG1 11 124622836 124635398 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBRG4 7 45100100 45112047 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBX1 22 19756703 19783593 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 14 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBX10 11 67631303 67639560 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBX15 1 118883046 118989556 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBX18 6 84687351 84764519 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBX19 1 168281040 168314426 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBX2 17 61399896 61409466 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBX20 7 35202430 35254147 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBX21 17 47733244 47746119 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 12 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBX22 23 80014756 80031769 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBX3 12 114670254 114684164 TRUE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 21 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBX4 17 61452404 61485110 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBX5 12 114353931 114408442 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBX6 16 30085793 30091887 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBXA2R 19 3594506 3606840 FALSE 597 -0.316308503877712 46 3155904 3648696 NA 2 NA NA 2 NA 492792 NA 16 7 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBXAS1 7 139777051 140020325 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TBXT 6 166157656 166168700 FALSE 228 -0.0936034159017556 66 165280135 167136462 0.330876988437597 3 0 0.330876988437597 3 0 1856327 3 12 11 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TC2N 14 91779751 91867536 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCAF1 7 143851375 143902198 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 6 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCAF2 7 143620952 143730409 FALSE 254 -0.83823948879751 23 143401650 144401063 0.307934776518021 0 0 0.307934776518021 0 0 999413 0 24 10 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCAIM 3 44338119 44409451 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCAP 17 39664187 39666555 FALSE 550 0.588438690170753 105 39461721 39864123 0.397448435712946 6 NA 0.397448435712946 6 NA 402402 NA 11 3 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCEA1 8 53966552 54022529 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCEA2 20 64049836 64072347 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCEA3 1 23381061 23424740 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCEAL1 23 103628704 103630953 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCEAL2 23 102125688 102127711 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCEAL3 23 103607451 103629690 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCEAL4 23 103576231 103587736 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCEAL5 23 103273691 103276872 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCEAL6 23 102140476 102142970 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCEAL7 23 103330196 103332326 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCEAL8 23 103252995 103255203 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCEAL9 23 103356489 103358462 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCEANC 23 13653189 13681964 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCEANC2 1 54053584 54112519 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCERG1 5 146447311 146511961 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCERG1L 10 131092391 131311721 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCF12 15 56918623 57299281 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCF15 20 603797 610398 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCF19 6 31158542 31167159 FALSE 189 -0.0260643675989525 69 31143403 31355632 0.39968910724052 3 1 0.39968910724052 3 1 212229 2 5 13 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCF20 22 42160013 42343616 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 26 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCF21 6 133889138 133895553 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCF23 2 27149004 27156974 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCF24 8 66946501 66962590 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCF25 16 89873570 89913627 FALSE 535 0.126990432456591 86 89733549 90075852 0.360033220093454 4 NA 0.360033220093454 4 NA 342303 NA 12 20 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCF3 19 1609290 1652605 TRUE 589 -0.44786516347233 39 1398963 1609436 NA 2 NA NA 2 NA 210473 NA 14 31 5 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCF4 18 55222331 55664787 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCF7 5 134114711 134151865 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCF7L1 2 85133410 85310388 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCF7L2 10 112950250 113167678 TRUE 336 0.281281646454176 97 110567687 113628982 0.39968910724052 4 NA 0.39968910724052 4 NA 3061295 NA 14 29 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCFL5 20 62841115 62861763 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCHH 1 152106317 152115454 FALSE 30 -1.0065224812273 20 152085351 152410539 0.381347761373373 0 0 0.381347761373373 0 0 325188 0 7 24 1 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCHHL1 1 152084144 152089064 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 12 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCHP 12 109900264 109983841 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 30 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCIM 8 40153455 40155308 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCIRG1 11 68039016 68050895 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCL1A 14 95709967 95714196 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCL1B 14 95686417 95692643 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCN1 11 59852800 59866575 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCN2 22 30606838 30627278 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCOF1 5 150357629 150400308 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 34 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCP1 6 159778498 159789749 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCP10 6 167357031 167384510 FALSE 229 0.162833614043837 88 167136718 168061946 0.3914153250654 4 2 0.3914153250654 4 2 925228 2 9 7 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCP10L 21 32574841 32587373 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCP10L2 6 167146414 167196913 FALSE 229 0.162833614043837 88 167136718 168061946 0.3914153250654 4 2 0.3914153250654 4 2 925228 2 9 11 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCP11 6 35118071 35148610 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCP11L1 11 33039417 33105943 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 23 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCP11L2 12 106301929 106347015 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 11 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCP11X2 23 102456862 102471842 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 1 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCTA 3 49412206 49416475 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCTE1 6 44278743 44297688 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCTE3 6 169740114 169751587 FALSE 230 -0.0331467567986683 71 168062029 170285618 0.212208033369562 4 0 0.212208033369562 4 0 2223589 4 11 4 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCTEX1D1 1 66752459 66778787 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 4 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCTEX1D2 3 196291219 196318299 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCTEX1D4 1 44805913 44806675 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 3 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCTN1 12 110614027 110649430 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCTN2 12 123671113 123708403 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 18 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TCTN3 10 95663396 95694143 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDG 12 103965804 103988874 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDGF1 3 46574534 46582463 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDO2 4 155854738 155920406 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDP1 14 89954939 90044768 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDP2 6 24649977 24667033 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 8 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDRD1 10 114179270 114232304 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDRD10 1 154502219 154548147 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDRD12 19 32719753 32829580 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDRD15 2 21123917 21143272 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 22 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDRD3 13 60396457 60573878 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 16 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDRD5 1 179591613 179691272 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 19 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDRD6 6 46687875 46704319 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 27 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDRD7 9 97411950 97496125 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 23 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDRD9 14 103928462 104052667 FALSE 470 -0.28238273283378 51 103746376 104759488 NA 2 NA NA 2 NA 1013112 NA 11 42 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDRKH 1 151770107 151791416 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TDRP 8 489792 545781 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEAD1 11 12674591 12944483 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEAD2 19 49340595 49362457 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEAD3 6 35473597 35497076 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEAD4 12 2959330 3040673 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEC 4 48135783 48269864 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TECPR1 7 98214624 98252251 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 29 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TECPR2 14 102362963 102502481 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TECR 19 14517085 14565980 FALSE 623 1.40086508861985 122 14514851 14560233 0.397448435712946 13 NA 0.397448435712946 13 NA 45382 NA 2 32 2 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TECRL 4 64275257 64409468 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TECTA 11 121101173 121191493 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 38 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TECTB 10 112283400 112305035 FALSE 336 0.281281646454176 97 110567687 113628982 0.39968910724052 4 NA 0.39968910724052 4 NA 3061295 NA 14 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEDC1 14 105489855 105499575 FALSE 474 -0.136925231270881 62 104993000 105529597 0.235629703240478 3 NA 0.235629703240478 3 NA 536597 NA 15 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEDC2 16 2460080 2464963 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEDDM1 1 182398117 182400616 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEF 22 41367333 41399326 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEFM 17 30897336 30906820 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEK 9 27109141 27230175 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 26 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEKT1 17 6789133 6831761 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 7 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEKT2 1 36084075 36088275 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEKT3 17 15303811 15341641 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 9 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEKT4 2 94871433 94876829 FALSE 71 0.0815929456248537 82 88067910 95104630 0.298111653356898 4 NA 0.298111653356898 4 NA 7036720 NA 11 8 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEKT5 16 10627501 10694945 FALSE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 10 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TELO2 16 1493344 1510457 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 23 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEN1 17 75979220 76000586 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEN1-CDK3 17 75979231 76005999 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TENM1 23 124375903 124963817 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 52 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TENM2 5 167284799 168264157 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 46 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TENM3 4 182143987 182803024 FALSE 157 0.0251014068813815 77 176192989 182751835 0.252310779181821 4 NA 0.252310779181821 4 NA 6558846 NA 7 44 1 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TENM4 11 78652831 79440948 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 51 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TENT2 5 79612120 79686648 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TENT4A 5 6713007 6757048 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TENT4B 16 50152918 50235310 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TENT5A 6 81491439 81752774 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TENT5B 1 27005020 27012836 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TENT5C 1 117605934 117628372 TRUE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 22 3 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TENT5D 23 80335504 80445311 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEP1 14 20365667 20413429 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 59 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEPP 16 57976435 57988116 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEPSIN 17 81228277 81239091 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 14 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TERB1 16 66754976 66801620 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 18 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TERB2 15 44956702 44979229 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TERF1 8 73008864 73048122 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TERF2 16 69355561 69408571 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TERF2IP 16 75647786 75761872 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TERT 5 1253147 1295069 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TES 7 116210493 116258783 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TESC 12 117038923 117099479 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TESK1 9 35605305 35610041 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 13 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TESK2 1 45343883 45491166 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TESMIN 11 68707440 68751564 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TESPA1 12 54948018 54984746 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TET1 10 68560656 68694482 TRUE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 44 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TET2 4 105145875 105279816 TRUE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 63 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TET3 2 73986404 74108176 TRUE 67 0.793792332862825 112 73958749 74108115 0.397448435712946 8 NA 0.397448435712946 8 NA 149366 NA 2 51 2 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX10 9 100302077 100352939 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 19 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX101 19 43401496 43418597 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 6 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX11 23 70528940 70908731 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 29 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX12 11 112167372 112172559 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX13A 23 105218929 105220674 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX13B 23 107980864 107982370 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX13C 23 125320120 125325214 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX13D 23 124246249 124336862 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 15 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX14 17 58556678 58692055 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 36 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX15 8 30831544 30913003 FALSE 263 -0.733220050878338 27 30753052 31640612 0.255173832388045 0 0 0.255173832388045 0 0 887560 0 6 42 1 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX19 17 82359247 82363776 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX2 17 64147227 64263301 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX22 14 105398579 105450106 FALSE 474 -0.136925231270881 62 104993000 105529597 0.235629703240478 3 NA 0.235629703240478 3 NA 536597 NA 15 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX26 13 30932703 30975502 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX261 2 70985938 70994945 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX264 3 51662693 51704323 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX29 13 111316184 111344249 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX30 13 102765990 102773811 FALSE 440 -0.576133065842435 32 102637150 102839818 0.364170154096734 1 0 0.364170154096734 1 0 202668 1 8 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX33 22 36991120 37007841 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX35 1 178513077 178548602 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX36 10 125576522 125683144 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX37 2 88524651 88529584 FALSE 71 0.0815929456248537 82 88067910 95104630 0.298111653356898 4 NA 0.298111653356898 4 NA 7036720 NA 11 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX38 1 46668855 46673594 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX43 5 126631722 126636287 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX44 2 231592901 231594283 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX45 19 7492976 7508450 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX46 1 23010834 23015850 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX47 7 88794106 88795721 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX48 9 114666434 114682066 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 4 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX49 12 48727435 48765786 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX50 1 173635333 173637134 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX51 2 126898864 126902097 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX53 9 114656304 114662374 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TEX9 15 56244009 56445997 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TF 3 133745956 133796640 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 17 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFAM 10 58385022 58399221 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFAP2A 6 10393186 10419659 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFAP2B 6 50818723 50847613 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFAP2C 20 56629302 56639283 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFAP2D 6 50713828 50772988 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFAP2E 1 35573370 35595328 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFAP4 16 4257186 4273075 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFB1M 6 155257509 155314493 FALSE 224 -0.117433393604286 66 152211521 156776133 0.330876988437597 3 0 0.330876988437597 3 0 4564612 3 15 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFB2M 1 246540560 246566324 FALSE 45 -0.259945689995748 51 245749557 247491500 NA 2 NA NA 2 NA 1741943 NA 13 9 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFCP2 12 51093663 51173134 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFCP2L1 2 121216587 121285207 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 16 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFDP1 13 113584721 113641470 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFDP2 3 141944428 142149544 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFDP3 23 133216669 133218348 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFE3 23 49028726 49043486 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 38 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFEB 6 41683978 41736259 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 18 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFEC 7 115935148 116159896 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFF1 21 42362282 42366594 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFF2 21 42346357 42351128 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFF3 21 42311667 42315651 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFG 3 100709331 100748966 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFIP11 22 26491225 26512505 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFPI 2 187464230 187565760 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFPI2 7 93885396 93890991 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFPT 19 54107013 54115675 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFR2 7 100620416 100642779 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 19 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TFRC 3 196027183 196082189 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 34 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TG 8 132866958 133134903 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 66 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGDS 13 94574051 94596257 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGFA 2 70447280 70554193 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGFB1 19 41301587 41353911 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 27 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGFB1I1 16 31471585 31477960 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGFB2 1 218346235 218444619 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGFB3 14 75958099 75982991 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 8 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGFBI 5 136028895 136063818 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 17 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGFBR1 9 99104038 99154192 TRUE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 31 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGFBR2 3 30606502 30694142 TRUE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGFBR3 1 91680343 91906335 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 19 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGFBR3L 19 7916145 7919097 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGFBRAP1 2 105264391 105330034 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 16 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGIF1 18 3411608 3459978 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGIF2 20 36573488 36593950 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGIF2-RAB5IF 20 36574553 36612384 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGIF2LX 23 89921882 89922883 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGM1 14 24249114 24264432 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 18 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGM2 20 38127387 38166578 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGM3 20 2296001 2341078 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 16 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGM4 3 44874608 44914990 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 16 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGM5 15 43232595 43266857 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 13 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGM6 20 2380908 2432753 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGM7 15 43276280 43302255 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGOLN2 2 85318020 85328425 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 8 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TGS1 8 55773142 55825448 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TH 11 2163929 2171877 FALSE 341 0.150532842564489 86 2129151 2776033 0.360033220093454 4 NA 0.360033220093454 4 NA 646882 NA 11 15 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THADA 2 43230836 43596046 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 44 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THAP1 8 42836674 42843325 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THAP10 15 70881342 70892785 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THAP11 16 67842082 67844195 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THAP12 11 76349956 76380971 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THAP2 12 71663009 71680639 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THAP3 1 6624866 6635586 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THAP4 2 241584405 241637449 FALSE 110 0.168915372975671 89 240875186 241873242 0.396348860884268 4 1 0.396348860884268 4 1 998056 3 22 11 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THAP5 7 108554543 108569750 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THAP6 4 75513946 75550473 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THAP7 22 20999104 21002196 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THAP8 19 36034985 36054762 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 7 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THAP9 4 82900684 82919969 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THBD 20 23045633 23049741 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THBS1 15 39581079 39599466 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 24 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THBS2 6 169215780 169254044 FALSE 230 -0.0331467567986683 71 168062029 170285618 0.212208033369562 4 0 0.212208033369562 4 0 2223589 4 11 27 2 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THBS3 1 155195588 155209051 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 25 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THBS4 5 79991311 80083287 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 22 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THEG 19 361747 376670 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THEGL 4 56530609 56603507 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THEM4 1 151873584 151909808 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THEM5 1 151847263 151853697 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THEM6 8 142727203 142736927 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THEMIS 6 127708072 127918631 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THEMIS2 1 27872543 27886685 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THG1L 5 157731197 157741448 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THNSL1 10 25016658 25026664 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THNSL2 2 88170295 88186636 FALSE 71 0.0815929456248537 82 88067910 95104630 0.298111653356898 4 NA 0.298111653356898 4 NA 7036720 NA 11 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THOC1 18 214520 268050 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 22 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THOC2 23 123600561 123733056 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 43 0 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THOC3 5 175917873 176034680 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THOC5 22 29505879 29555216 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 19 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THOC6 16 3024027 3027755 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 9 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THOC7 3 63833870 63863903 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THOP1 19 2785460 2815807 FALSE 595 -0.450163878767581 39 2732975 3094339 NA 2 NA NA 2 NA 361364 NA 12 15 3 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THPO 3 184371935 184381968 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 14 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THRA 17 40058290 40093867 FALSE 551 -0.178633749129299 62 39868328 40193677 0.235629703240478 3 NA 0.235629703240478 3 NA 325349 NA 13 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THRAP3 1 36224416 36305357 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THRB 3 24117153 24495756 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THRSP 11 78063861 78068351 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THSD1 13 52377167 52416373 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 14 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THSD4 15 71096952 71783383 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 24 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THSD7A 7 11370357 11832198 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 32 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THSD7B 2 136765545 137677717 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 31 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THSD8 19 12802031 12813581 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THTPA 14 23555988 23560271 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THUMPD1 16 20702816 20742084 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THUMPD2 2 39736060 39779267 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THUMPD3 3 9362842 9386791 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 10 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THY1 11 119417378 119424985 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 THYN1 11 134248279 134253370 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIA1 2 70209444 70248660 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIAF1 17 29073521 29078857 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIAL1 10 119571802 119597029 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIAM1 21 31118416 31559977 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIAM2 6 154832697 155257723 FALSE 224 -0.117433393604286 66 152211521 156776133 0.330876988437597 3 0 0.330876988437597 3 0 4564612 3 15 35 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TICAM1 19 4815932 4831704 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 9 1 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TICAM2 5 115578650 115602479 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TICRR 15 89575482 89631056 FALSE 499 -0.326925020976481 44 88857449 89702022 0.213873728132233 2 0 0.213873728132233 2 0 844573 2 13 40 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIE1 1 43300993 43323108 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 25 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIFA 4 112274542 112285903 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 3 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIFAB 5 135444218 135452399 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIGAR 12 4307763 4354593 FALSE 378 0.86368839094413 113 4269828 4445792 0.397448435712946 8 NA 0.397448435712946 8 NA 175964 NA 5 8 1 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIGD2 4 89111500 89114899 FALSE 149 -0.326082249036553 45 87163539 94278399 1 2 1 1 2 1 7114860 1 29 7 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIGD3 11 65354767 65357613 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIGD4 4 152769354 152779764 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIGD5 8 143597835 143603224 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIGD6 5 149993118 150001167 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIGD7 16 3298832 3305729 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIGIT 3 114276913 114310288 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMD4 5 156919282 156963255 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMELESS 12 56416373 56449403 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 27 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM10 11 57528463 57530803 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM10B 11 6481447 6484679 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM13 19 2425624 2427894 FALSE 594 0.361599717529754 101 2405415 2717768 0.397448435712946 5 NA 0.397448435712946 5 NA 312353 NA 6 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM17A 1 201955491 201970661 FALSE 36 -0.0702600326825716 67 201211017 202010242 0.31995059840763 3 NA 0.31995059840763 3 NA 799225 NA 14 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM17B 23 48893447 48898143 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM21 18 74148511 74160530 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 7 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM22 17 997117 1003671 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM23 10 45972449 46003734 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM23B 10 49942033 49974850 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 1 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM29 19 10928733 10933535 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM44 19 7926718 7943920 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM50 19 39480412 39493785 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM8A 23 101345659 101349196 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM8B 11 112084800 112086798 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMM9 14 58408494 58427614 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 3 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMMDC1 3 119498532 119525090 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMP1 23 47582313 47586789 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMP2 17 78852977 78925387 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 13 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMP3 22 32801701 32863043 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIMP4 3 12153051 12159351 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TINAG 6 54307859 54390152 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TINAGL1 1 31576485 31587686 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TINCR 19 5558167 5578349 FALSE 604 -0.336428649063697 46 5304635 5610091 NA 2 NA NA 2 NA 305456 NA 4 2 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TINF2 14 24239643 24242674 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIPARP 3 156673235 156706770 FALSE 125 1.37077859585097 121 156548985 156706700 0.397448435712946 13 NA 0.397448435712946 13 NA 157715 NA 2 23 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIPIN 15 66336206 66386746 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIPRL 1 168178933 168202114 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TIRAP 11 126283065 126298845 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TJAP1 6 43477523 43506556 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TJP1 15 29699367 29968865 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 44 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TJP2 9 69121264 69274615 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 28 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TJP3 19 3708109 3750813 FALSE 598 -0.201030278929954 57 3651966 3942109 0.158317833115363 3 NA 0.158317833115363 3 NA 290143 NA 9 25 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TK1 17 78174075 78187233 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 7 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TK2 16 66508003 66552544 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TKFC 11 61333210 61353295 FALSE 351 -0.00270858795298945 77 61249834 61434618 0.252310779181821 4 NA 0.252310779181821 4 NA 184784 NA 10 22 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TKT 3 53224707 53256052 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TKTL1 23 154295671 154330350 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TKTL2 4 163471093 163473746 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLCD1 17 28724348 28727935 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLCD2 17 1702790 1710438 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLDC1 16 84476421 84554033 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLDC2 20 36876121 36894235 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLE1 9 81583683 81689305 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 21 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLE2 19 2997638 3047635 FALSE 595 -0.450163878767581 39 2732975 3094339 NA 2 NA NA 2 NA 361364 NA 12 23 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLE3 15 70047790 70098176 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 23 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLE4 9 79571773 79726882 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 25 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLE6 19 2977446 2995184 FALSE 595 -0.450163878767581 39 2732975 3094339 NA 2 NA NA 2 NA 361364 NA 12 16 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLK1 2 170990823 171231314 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 22 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLK2 17 62458658 62615481 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 22 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLL1 4 165873258 166103895 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLL2 10 96364606 96513918 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLN1 9 35696948 35732395 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 57 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLN2 15 62390526 62844631 FALSE 487 0.296385928010631 99 61991730 63677860 0.361681390833996 5 NA 0.361681390833996 5 NA 1686130 NA 13 58 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLNRD1 15 81000944 81005788 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLR1 4 38790677 38856817 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLR10 4 38772239 38782990 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLR2 4 153684070 153705702 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLR3 4 186069152 186088069 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLR4 9 117704175 117724730 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLR5 1 223109406 223143282 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLR6 4 38823715 38856817 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLR7 23 12867083 12890380 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 14 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLR8 23 12906620 12923169 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 14 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLR9 3 52221080 52226163 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLX1 10 101130505 101137789 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLX2 2 74513463 74517147 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TLX3 5 171309284 171312134 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM2D1 1 61681046 61725423 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM2D2 8 38988808 38996824 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM2D3 15 101621444 101652391 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 7 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM4SF1 3 149369022 149377865 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM4SF18 3 149318498 149334414 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 5 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM4SF19 3 196319342 196338503 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM4SF19-TCTEX1D2 3 196316082 196338373 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM4SF20 2 227362156 227381995 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM4SF4 3 149473974 149503281 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM4SF5 17 4771884 4783213 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM6SF1 15 83107407 83144854 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 11 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM6SF2 19 19264364 19273391 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM7SF2 11 65111845 65116384 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM7SF3 12 26973195 27014434 FALSE 395 1.05231732428215 116 26055418 27646129 0.397448435712946 10 NA 0.397448435712946 10 NA 1590711 NA 13 13 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM9SF1 14 24189143 24195687 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM9SF2 13 99446311 99564006 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM9SF3 10 96518109 96587452 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TM9SF4 20 32109506 32167258 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMA16 4 163494442 163520539 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 7 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMA7 3 48440257 48444208 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMBIM1 2 218274192 218292586 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMBIM4 12 66135846 66170072 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMBIM6 12 49707725 49764934 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMC1 9 72521608 72838230 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 20 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMC2 20 2536607 2641784 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 21 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMC3 15 81331217 81374213 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMC4 19 54160108 54173250 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMC5 16 19410496 19499113 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 26 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMC6 17 78110458 78132407 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 24 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMC7 16 18983934 19063942 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 17 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMC8 17 78130770 78142968 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 17 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMCC1 3 129647792 129893606 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMCC2 1 205228176 205285632 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 14 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMCC3 12 94567124 94650562 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMCO1 1 165724293 165827755 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMCO2 1 40245947 40251691 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMCO3 13 113490995 113554590 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 14 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMCO4 1 19682213 19799945 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 14 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMCO5A 15 37921939 37967724 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMCO6 5 140639427 140645408 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMED1 19 10832438 10836318 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMED10 14 75131470 75176631 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 6 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMED2 12 123584531 123598577 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMED3 15 79311062 79427432 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMED4 7 44577894 44582287 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMED5 1 93149742 93180728 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMED6 16 69343248 69351809 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMED7 5 115613508 115632992 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMED7-TICAM2 5 115578642 115626161 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMED8 14 77335021 77377109 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 7 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMED9 5 177592158 177596124 FALSE 180 0.0547178976592215 82 177259972 177608963 0.298111653356898 4 NA 0.298111653356898 4 NA 348991 NA 18 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEFF1 9 100473113 100577636 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEFF2 2 191949043 192195709 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM100 17 55719627 55732121 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM101 17 44011188 44023946 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM102 17 7435443 7437679 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM104 17 74776483 74839779 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 13 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM105 17 81311270 81330674 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM106A 17 43211835 43220041 FALSE 558 -0.437962745946443 39 43180803 43527818 NA 2 NA NA 2 NA 347015 NA 5 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM106B 7 12211241 12243367 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 7 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM106C 12 47963569 47968878 FALSE 401 0.570076889856971 105 47720770 47968206 0.397448435712946 6 NA 0.397448435712946 6 NA 247436 NA 6 8 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM107 17 8173237 8176399 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM108 3 133038391 133397792 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM109 11 60913874 60923443 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM11 17 21197280 21214624 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM110-MUSTN1 3 52833121 52897562 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM114 16 8537605 8590193 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 4 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM115 3 50354749 50359610 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM116 12 111931282 112013185 FALSE 421 -0.0176554379426518 77 111455010 112163629 0.252310779181821 4 NA 0.252310779181821 4 NA 708619 NA 11 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM117 12 43835967 44389762 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM119 12 108589846 108598320 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 4 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM120A 7 75986837 75994659 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM120B 12 121712752 121783001 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM121 14 105526603 105530202 FALSE 474 -0.136925231270881 62 104993000 105529597 0.235629703240478 3 NA 0.235629703240478 3 NA 536597 NA 15 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM121B 22 17116299 17121367 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 7 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM123 11 102396332 102470384 FALSE 365 -0.0795721779001769 64 102336719 108222481 0.313405470508204 3 1 0.313405470508204 3 1 5885762 2 36 6 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM125 1 43269994 43274002 FALSE 22 -0.315394266901499 44 43186698 44139047 0.213873728132233 2 0 0.213873728132233 2 0 952349 2 24 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM126A 11 85647967 85656547 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM126B 11 85628573 85636539 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM127 2 96248516 96265994 TRUE 73 0.130965048807663 86 96195440 96642849 0.360033220093454 4 NA 0.360033220093454 4 NA 447409 NA 10 24 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM128 4 4235542 4248212 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM129 4 1715952 1721358 FALSE 142 0.0353806292410739 77 1699590 2008986 0.252310779181821 4 NA 0.252310779181821 4 NA 309396 NA 7 6 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM130 7 98846488 98870771 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM131 2 97756333 97995891 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 44 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM131L 4 153466346 153636711 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 38 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM132A 11 60924463 60937159 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 20 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM132B 12 125186836 125662377 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 17 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM132C 12 128267403 128707915 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 17 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM132D 12 129071725 129903666 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM132E 17 34579487 34639318 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM134 11 67461710 67469272 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM135 11 87037844 87323758 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM136 11 120325129 120333682 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM138 11 61362001 61369509 FALSE 351 -0.00270858795298945 77 61249834 61434618 0.252310779181821 4 NA 0.252310779181821 4 NA 184784 NA 10 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM139 7 143279957 143288048 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM140 7 135148072 135166215 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM141 9 136791355 136793257 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM143 19 48332356 48364237 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM144 4 158201604 158255411 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM145 19 42313325 42325062 FALSE 655 -0.303862148002883 46 42297355 42428877 NA 2 NA NA 2 NA 131522 NA 7 13 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM147 19 35545595 35547526 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM14A 6 52671109 52686588 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM14B 6 10747759 10852753 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 20 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM14C 6 10722915 10731129 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM150A 2 85598548 85603196 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM150B 19 55312801 55334048 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 7 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM150C 4 82483170 82562357 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM151A 11 66291870 66296664 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM151B 6 44270466 44307506 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 34 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM154 4 152618632 152680165 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM155 4 121758930 121765427 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM156 4 38966744 39032922 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM158 3 45224466 45226278 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 3 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM159 16 21158377 21180616 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM160 19 47045907 47048630 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 4 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM161A 19 19119169 19138513 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM161B 5 88189633 88269476 FALSE 171 0.215918464504023 94 84137275 90525167 0.39968910724052 4 NA 0.39968910724052 4 NA 6387892 NA 10 14 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM163 2 134455759 134719000 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM164 23 110002631 110182734 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM165 4 55395957 55453397 FALSE 146 0.213211587194963 92 52745501 65323242 0.39968910724052 4 2 0.39968910724052 4 2 12577741 2 35 16 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM167A 5 83052846 83077863 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM167B 1 109089803 109096934 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM168 7 112762382 112790592 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM169 2 216081866 216102783 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM17 2 62500221 62511894 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM170A 16 75443054 75465497 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM170B 6 11538278 11583524 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM171 5 73120292 73131817 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM173 5 139475534 139482935 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM174 5 73173195 73175143 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM175 4 932387 958656 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 13 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM176A 7 150800403 150805120 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 7 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM176B 7 150791285 150801360 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 6 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM177 2 119679167 119686507 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM178A 2 39664982 39717963 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM178B 7 141074232 141480380 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 6 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM179 14 104474678 104605647 FALSE 470 -0.28238273283378 51 103746376 104759488 NA 2 NA NA 2 NA 1013112 NA 11 11 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM179B 11 62787415 62790405 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM18 2 667335 677439 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 7 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM181 6 158536436 158635428 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM182 2 102736905 103019900 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM183A 1 203007386 203024848 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM184A 7 1542235 1560821 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM184B 22 38219291 38273034 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM184C 4 147617383 147672044 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM185A 23 149596556 149631912 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM185B 2 120221278 120223408 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM186 16 8780384 8797648 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM187 23 153972327 153983195 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM189 20 50118254 50153734 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM189-UBE2V1 20 50081124 50153637 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM19 12 71686087 71705046 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM190 19 55376836 55378244 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM191B 22 18527802 18530573 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM191C 22 21466423 21471269 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 8 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM192 4 165070608 165208549 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM196 7 19719310 19773598 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 5 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM198 2 219543663 219550595 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM199 17 28357581 28363683 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM200A 6 130365734 130443063 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM200B 1 29119428 29123935 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM200C 18 5882072 5895955 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM201 1 9588922 9614873 FALSE 7 0.18541391362799 90 8324498 9691530 0.275334878251284 5 NA 0.275334878251284 5 NA 1367032 NA 12 14 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM202 15 72398273 72408029 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM203 9 137204082 137205638 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM204 16 1528688 1555580 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 5 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM205 19 11342776 11346518 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM206 1 212363931 212414901 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM207 3 190428655 190449876 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM208 16 67227103 67229278 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM209 7 130164715 130207770 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 15 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM210 9 137170858 137172409 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM211 22 24934954 24946695 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM212 3 171843349 171938715 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM213 7 138797952 138838101 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM214 2 27032910 27041695 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM215 9 32783499 32787399 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM216 11 61391687 61398863 FALSE 351 -0.00270858795298945 77 61249834 61434618 0.252310779181821 4 NA 0.252310779181821 4 NA 184784 NA 10 5 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM217 6 37212180 37258155 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM218 11 125096545 125111763 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 5 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM219 16 29940885 29973052 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM220 17 10699015 10730316 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 13 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM221 19 17435509 17448567 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 5 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM222 1 27322145 27336400 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM223 11 62771629 62792021 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM225 11 123882926 123885642 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM225B 7 99598066 99610813 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM229A 7 124030916 124033023 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM229B 14 67447084 67533739 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 4 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM230 20 5068232 5113103 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM231 16 75536744 75556286 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM232 5 110289233 110738956 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM233 12 119593459 119643066 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM234 1 32214472 32222359 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM235 17 78231310 78240987 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 7 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM236 10 17752252 17800868 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM237 2 201620184 201643570 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM238 19 55379245 55384598 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 2 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM239 20 2816302 2820284 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 3 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM240 1 1535174 1540453 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 5 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM241 18 23197144 23437961 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 23 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM242 6 157289386 157323601 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM243 7 87196160 87220587 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM244 6 129831244 129861547 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM245 9 109015152 109119945 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 21 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM246 9 101473171 101533537 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM247 2 46479565 46484425 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 4 1 TRUE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM248 7 66921225 66958551 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM249 8 144352219 144354914 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 4 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM25 11 118531041 118547280 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM250 9 136114581 136118863 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM251 14 93184951 93187089 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM252 9 68536580 68540867 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM253 14 21098937 21103724 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM254 10 80078646 80092557 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM255A 23 120258650 120311556 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM255B 13 113759240 113816995 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM256 17 7402975 7404137 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM256-PLSCR3 17 7389734 7404097 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM258 11 61768501 61792802 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 30 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM259 19 1009648 1021179 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM26 10 61406643 61453450 FALSE 324 0.504242099052201 104 60086767 62198353 0.397448435712946 6 NA 0.397448435712946 6 NA 2111586 NA 7 8 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM260 14 56488354 56650606 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 17 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM262 11 65084979 65089375 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM263 12 106955719 106978778 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM265 16 30740381 30744281 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM266 15 76059837 76229121 FALSE 492 -0.226543951235523 57 75468765 76202218 0.158317833115363 3 NA 0.158317833115363 3 NA 733453 NA 10 14 1 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM267 5 43444252 43483893 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM268 9 114611206 114646422 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM269 1 42785007 42816619 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM270 7 73861159 73865893 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM272 13 51813347 51845175 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM273 10 49154725 49188585 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM30A 6 75252924 75284968 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM30B 14 61277370 61281840 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 5 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM31 23 103710909 103714028 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM33 4 41935120 41960572 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM35A 23 101078720 101096364 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM35B 1 34981535 34985353 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM37 2 119429901 119438520 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM38A 19 16661127 16690029 FALSE 629 -0.412926938873791 39 16377140 16841876 NA 2 NA NA 2 NA 464736 NA 12 7 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM38B 9 105694544 105776612 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 7 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM39A 3 119429500 119468830 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM39B 1 32072031 32102866 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM40 3 12733525 12769457 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM41A 3 185476496 185499057 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 33 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM41B 11 9280654 9314780 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM42 3 44861869 44865670 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM43 3 14124940 14143679 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 12 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM44 3 194587673 194633689 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 12 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM45A 3 100492619 100577444 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM45B 11 129815819 129860003 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM47 23 34627064 34657288 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM50A 1 25337917 25362361 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM50B 21 33432485 33480011 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM51 1 15152532 15220480 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 8 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM52 1 1917590 1919273 FALSE 4 0.271636252662079 97 1471992 1966499 0.39968910724052 4 NA 0.39968910724052 4 NA 494507 NA 16 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM52B 12 10170542 10191801 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM53 1 44635238 44674555 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM54 1 32894594 32901438 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM56 1 95117338 95197607 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM56-RWDD3 1 95117923 95247225 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM59 1 54026681 54053504 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM59L 19 18607430 18621039 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM60 7 77793728 77798580 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM61 1 54980792 54992293 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM62 15 43123279 43185146 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM63A 1 225845536 225882369 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM63B 6 44126914 44155519 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM63C 14 77116568 77259495 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 27 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM64 8 90621995 90791632 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM65 8 124306189 124372692 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM67 8 93754844 93819234 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 28 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM68 8 55696424 55773407 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM69 1 45687214 45694443 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM70 8 73972437 73982783 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM71 8 132685007 132760712 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM72 10 44911200 44937002 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM74 8 108606850 108787615 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM74B 20 1180561 1185415 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM79 1 156282935 156293185 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM80 11 695428 705028 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 7 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM81 1 205083129 205084460 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM82 1 15742422 15747982 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM86A 11 18693122 18704785 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM86B 19 55226639 55229264 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM87A 15 42210452 42273663 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 21 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM87B 2 112055223 112119318 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 20 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM88 17 7855065 7856099 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM88B 1 1426128 1427787 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 3 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM89 3 48620759 48621855 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM8A 16 370773 387113 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 16 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM8B 9 35814451 35865518 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 20 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM9 1 201134772 201171574 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM91 19 41350911 41384083 FALSE 652 0.106016391674115 83 40843969 41438332 0.353029999616203 4 2 0.353029999616203 4 2 594363 2 18 15 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM92 17 50271406 50281485 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 6 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM94 17 75441159 75500090 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 33 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM95 17 7355123 7357219 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM97 17 28319095 28328685 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM98 17 32927910 32945106 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM99 17 40819106 40836274 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 13 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMEM9B 11 8947294 8965011 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMF1 3 69019827 69052339 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMIE 3 46694528 46710886 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMIGD1 17 30316333 30334059 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMIGD2 19 4292232 4302431 FALSE 600 -0.234869927794019 51 4175145 4306008 NA 2 NA NA 2 NA 130863 NA 7 7 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMIGD3 1 111483348 111563962 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMLHE 23 155490115 155669944 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMOD1 9 97501180 97601748 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMOD2 15 51751561 51816368 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMOD3 15 51829628 51947295 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMOD4 1 151169986 151176284 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPO 12 98515512 98550379 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPPE 3 33090421 33096801 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS11A 4 67909385 67964140 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS11B 4 68226653 68245720 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS11D 4 67820876 67884032 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS11E 4 68447449 68497604 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS11F 4 68053198 68129880 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 11 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS12 12 50842920 50887884 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS13 11 117900643 117929459 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS15 21 18269116 18485879 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 25 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS2 21 41464551 41531116 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 122 22 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS3 21 42371837 42396846 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS4 11 118077012 118121890 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS5 11 113687546 113706373 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS6 22 37065436 37109713 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 22 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS7 3 112034843 112081269 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMPRSS9 19 2360238 2426239 FALSE 593 -0.414090744354779 39 2233974 2403179 NA 2 NA NA 2 NA 169205 NA 11 23 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMSB10 2 84905625 84906675 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 2 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMSB15A 23 102513676 102516784 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMSB15B 23 103918896 104076212 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMSB4X 23 12975108 12977227 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 2 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMTC1 12 29500840 29784759 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMTC2 12 82686880 83134870 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMTC3 12 88142296 88199887 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMTC4 13 100603927 100675093 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMUB1 7 151081080 151083546 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMUB2 17 44186970 44191731 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMX1 14 51240162 51257546 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 8 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMX2 11 57712600 57740973 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMX2-CTNND1 11 57712605 57791586 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 20 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMX3 18 68673688 68715298 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 17 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TMX4 20 7977348 8019829 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 9 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNC 9 115019578 115118257 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 43 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNF 6 31575567 31578336 FALSE 190 -0.0119107701145039 73 31356275 31662464 0.249162995977636 4 2 0.249162995977636 4 2 306189 2 19 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFAIP1 17 28335602 28347009 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFAIP2 14 103123442 103137439 FALSE 467 -0.166720648541046 62 102922761 103677490 0.235629703240478 3 NA 0.235629703240478 3 NA 754729 NA 13 14 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFAIP3 6 137867188 137883312 TRUE 219 0.602641570411187 107 137197170 138296943 0.397448435712946 6 NA 0.397448435712946 6 NA 1099773 NA 6 26 2 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFAIP6 2 151357592 151380048 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFAIP8 5 119268692 119399688 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFAIP8L1 19 4639518 4655568 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 3 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFAIP8L2 1 151156629 151159749 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFAIP8L3 15 51056598 51105276 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF10A 8 23190452 23225126 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 13 3 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF10B 8 23020133 23069179 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 11 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF10C 8 23102590 23117437 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF10D 8 23135588 23164030 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF11A 18 62325287 62391292 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 14 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF11B 8 118923557 118952200 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF12A 16 3018445 3022383 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF13B 17 16929816 16972118 FALSE 544 -0.432476680468626 39 16223200 17212252 NA 2 NA NA 2 NA 989052 NA 14 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF13C 22 41922023 41926818 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 5 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF14 1 2555639 2565382 TRUE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF17 16 11965107 11968068 FALSE 518 0.520580734359524 105 11965400 14446991 0.397448435712946 6 NA 0.397448435712946 6 NA 2481591 NA 8 5 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF18 1 1203508 1206691 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF19 13 23570370 23676104 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF1A 12 6328757 6342114 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 11 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF1B 1 12167003 12209228 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 13 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF21 6 47231532 47309905 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF25 1 6460786 6466195 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF4 1 1211326 1214138 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 7 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF6B 20 63696651 63698684 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF8 1 12063377 12144207 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 16 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFRSF9 1 7915894 7943165 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFSF10 3 172505508 172523507 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFSF11 13 42562736 42608013 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFSF12 17 7548891 7557890 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFSF12-TNFSF13 17 7549099 7561601 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 14 1 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFSF13 17 7558292 7561608 FALSE 540 -0.560247871447121 34 7559238 7654707 0.312402751065481 1 0 0.312402751065481 1 0 95469 1 12 8 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFSF13B 13 108251240 108308484 FALSE 441 -0.133025597356164 67 102840913 109206723 0.31995059840763 3 NA 0.31995059840763 3 NA 6365810 NA 12 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFSF14 19 6661253 6670588 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFSF15 9 114784635 114806126 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFSF18 1 173039960 173050963 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFSF4 1 173183734 173207313 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFSF8 9 114893343 114930595 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNFSF9 19 6530999 6535928 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNIK 3 171061339 171460408 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 34 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNIP1 5 151029945 151093577 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNIP2 4 2741648 2756376 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNIP3 4 121131408 121227466 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 14 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNK1 17 7380534 7389774 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNK2 3 195863364 195911945 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 25 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNKS 8 9555914 9782346 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 29 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNKS1BP1 11 57299638 57324952 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 26 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNKS2 10 91798312 91865276 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 29 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNMD 23 100584802 100599885 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNN 1 175067858 175148066 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 25 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNNC1 3 52451102 52454070 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 6 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNNC2 20 45823214 45833745 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNNI1 1 201403768 201429866 FALSE 36 -0.0702600326825716 67 201211017 202010242 0.31995059840763 3 NA 0.31995059840763 3 NA 799225 NA 14 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNNI2 11 1838989 1841680 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNNI3 19 55151767 55157773 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNNI3K 1 74235401 74544428 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 26 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNNT1 19 55132794 55149354 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 12 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNNT2 1 201359008 201377762 FALSE 36 -0.0702600326825716 67 201211017 202010242 0.31995059840763 3 NA 0.31995059840763 3 NA 799225 NA 14 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNNT3 11 1919562 1938706 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 18 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNP1 2 216859458 216860064 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNP2 16 11267748 11269533 FALSE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 3 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNPO1 5 72816312 72916733 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNPO2 19 12699194 12724011 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 23 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNPO3 7 128954180 129055173 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 22 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNR 1 175315194 175743770 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 28 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNRC18 7 5306790 5425414 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 51 7 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNRC6A 16 24610209 24827632 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 38 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNRC6B 22 40044817 40335808 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 35 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNRC6C 17 77959240 78108835 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 28 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNS1 2 217799588 218033982 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 38 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNS2 12 53046969 53064372 FALSE 408 0.483867645866869 104 52675230 53105164 0.397448435712946 6 NA 0.397448435712946 6 NA 429934 NA 14 35 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNS3 7 47275154 47582558 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 34 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNS4 17 40475828 40501597 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 15 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TNXB 6 32041153 32115334 FALSE 193 -0.434539870290981 36 31934396 32192747 0.315774863180649 1 0 0.315774863180649 1 0 258351 1 23 73 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOB1 17 50862223 50867978 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOB2 22 41433492 41447023 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOE1 1 45339670 45343975 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOGARAM1 14 44962208 45074431 FALSE 451 -0.0664108785456086 67 44505506 45130739 0.31995059840763 3 NA 0.31995059840763 3 NA 625233 NA 6 32 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOGARAM2 2 28956611 29061373 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 24 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOLLIP 11 1274371 1309654 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOM1 22 35299275 35347994 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOM1L1 17 54899387 54961956 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 16 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOM1L2 17 17843511 17972422 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOMM20 1 235109336 235128936 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOMM20L 14 58395916 58408701 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 5 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOMM22 22 38681948 38685421 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOMM34 20 44942130 44960486 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOMM40 19 44890569 44903689 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOMM40L 1 161225939 161230744 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOMM5 9 37582646 37592642 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 3 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOMM6 6 41787662 41789898 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOMM7 7 22812628 22822852 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 3 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOMM70 3 100363431 100401398 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TONSL 8 144428775 144444444 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 30 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOP1 20 41028818 41124487 TRUE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOP1MT 8 143304384 143359979 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOP2A 17 40388516 40417950 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 40 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOP2B 3 25597905 25664907 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 36 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOP3A 17 18271428 18315007 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 21 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOP3B 22 21957025 21982816 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 19 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOPAZ1 3 44241886 44332098 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 33 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOPBP1 3 133598175 133662380 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 32 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOPORS 9 32540544 32552553 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 15 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOR1A 9 129812944 129824134 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 7 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOR1AIP1 1 179882042 179925000 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOR1AIP2 1 179839967 179877803 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOR1B 9 129803153 129811281 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 7 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOR2A 9 127731524 127735317 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOR3A 1 179081377 179098023 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOR4A 9 137277749 137282641 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOX 8 58805418 59119208 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOX2 20 43914864 44069616 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOX3 16 52438005 52547802 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TOX4 14 21476597 21499175 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TP53 17 7661779 7687550 TRUE 541 0.852618407541812 113 7655708 7687396 0.397448435712946 8 NA 0.397448435712946 8 NA 31688 NA 3 42 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TP53AIP1 11 128934731 128943399 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TP53BP1 15 43403061 43510728 TRUE 482 0.64044234586315 108 43403258 43521497 0.397448435712946 7 NA 0.397448435712946 7 NA 118239 NA 3 62 10 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TP53BP2 1 223779899 223845972 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TP53I11 11 44885903 44951306 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TP53I13 17 29566052 29573157 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TP53I3 2 24077433 24085861 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TP53INP1 8 94925972 94949411 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TP53INP2 20 34704290 34713439 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TP53RK 20 46684365 46689779 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TP53TG3D 16 32252719 32255922 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TP53TG5 20 45372563 45407889 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TP63 3 189631416 189897279 TRUE 137 0.632133845014845 107 187371138 189902345 0.397448435712946 7 NA 0.397448435712946 7 NA 2531207 NA 7 45 8 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TP73 1 3652520 3736201 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 16 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPBG 6 82363206 82370828 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPBGL 11 75240905 75243697 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPCN1 12 113221050 113298585 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 26 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPCN2 11 69048897 69162440 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 25 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPD52 8 80034745 80231232 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPD52L1 6 125119049 125264407 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 8 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPD52L2 20 63865228 63891545 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPD52L3 9 6328375 6331900 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPGS1 19 507497 519654 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPGS2 18 36777647 36829216 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 13 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPH1 11 18017564 18042426 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPH2 12 71938846 72186618 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPI1 12 6867119 6870948 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPK1 7 144451941 144836395 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPM1 15 63042632 63071915 FALSE 487 0.296385928010631 99 61991730 63677860 0.361681390833996 5 NA 0.361681390833996 5 NA 1686130 NA 13 15 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPM2 9 35681992 35690121 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPM3 1 154155304 154194648 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPM4 19 16067021 16103005 FALSE 627 -0.490607499224798 35 15728649 16234395 0.252021069663427 1 0 0.252021069663427 1 0 505746 1 13 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPMT 6 18128311 18155074 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 8 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPO 2 1374066 1543711 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 21 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPP1 11 6612763 6619485 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPP2 13 102597003 102679958 FALSE 439 -0.216246535569968 57 102597216 102636382 0.158317833115363 3 NA 0.158317833115363 3 NA 39166 NA 1 32 2 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPPP 5 659862 693395 FALSE 160 0.207920496709617 94 224566 833800 0.39968910724052 4 NA 0.39968910724052 4 NA 609234 NA 9 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPPP2 14 21024109 21036276 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPPP3 16 67389809 67393535 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPR 1 186311652 186375693 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 56 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPRA1 3 127571266 127598267 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPRG1 3 188947214 189325304 FALSE 137 0.632133845014845 107 187371138 189902345 0.397448435712946 7 NA 0.397448435712946 7 NA 2531207 NA 7 5 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPRG1L 1 3625002 3630127 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPRKB 2 73729104 73737400 FALSE 65 -0.681372041727781 29 73385994 73862307 0.39968910724052 1 0 0.39968910724052 1 0 476313 1 6 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPRN 9 137191617 137204193 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 10 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPRX1 19 47801243 47819051 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 6 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPSAB1 16 1240696 1242554 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 5 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPSB2 16 1227272 1230184 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 5 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPSD1 16 1256059 1258998 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 6 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPSG1 16 1221651 1225257 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 9 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPST1 7 66205199 66420543 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPST2 22 26521983 26596717 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPT1 13 45333471 45341370 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPTE 21 10521553 10606140 FALSE 693 0.397034508268135 103 10413729 10603577 0.397448435712946 5 NA 0.397448435712946 5 NA 189848 NA 2 21 2 TRUE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPTE2 13 19422877 19536762 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPTEP2-CSNK1E 22 38291918 38398522 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TPX2 20 31739271 31801805 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRA2A 7 23504780 23532041 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 8 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRA2B 3 185915906 185938136 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRABD 22 50185915 50199598 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRABD2A 2 84821650 84907008 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRABD2B 1 47760528 47996895 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 10 1 TRUE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRADD 16 67154180 67160298 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAF1 9 120902393 120929173 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAF2 9 136881912 136926607 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAF3 14 102777476 102911500 TRUE 466 1.08636102865995 116 102777609 102911484 0.397448435712946 10 NA 0.397448435712946 10 NA 133875 NA 1 39 0 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAF3IP1 2 238320441 238400900 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 19 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAF3IP2 6 111556454 111606278 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 12 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAF3IP3 1 209756032 209782320 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAF4 17 28743984 28750958 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAF5 1 211326615 211374946 TRUE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAF6 11 36487027 36510272 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAF7 16 2155698 2178129 FALSE 510 0.594834269358152 105 2155798 2179262 0.397448435712946 6 NA 0.397448435712946 6 NA 23464 NA 2 28 0 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAFD1 12 112125501 112153609 FALSE 421 -0.0176554379426518 77 111455010 112163629 0.252310779181821 4 NA 0.252310779181821 4 NA 708619 NA 11 14 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAIP 3 49828599 49856574 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 15 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAK1 3 42013802 42225889 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 26 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAK2 2 201377207 201451579 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAM1 8 70573442 70608387 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAM1L1 4 117083554 117085576 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAM2 6 52497402 52576915 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRANK1 3 36826820 36945098 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 46 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAP1 16 3651639 3717597 FALSE 514 0.622835549580881 107 3565001 3966951 0.397448435712946 7 NA 0.397448435712946 7 NA 401950 NA 6 26 3 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC1 17 7930345 7932123 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC10 21 44012319 44106552 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC11 4 183659267 183713594 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 28 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC12 2 3379675 3485094 FALSE 50 0.0158508458876727 77 41647 3847209 0.252310779181821 4 NA 0.252310779181821 4 NA 3805562 NA 18 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC13 5 65624716 65666233 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 13 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC2 23 13712244 13734635 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC2B 19 57363511 57365353 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC2L 16 88856220 88862686 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC3 1 36136570 36156053 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC3L 6 116494989 116545610 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC4 11 119018432 119025454 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 8 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC5 19 7680843 7687703 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 3 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC6A 19 45162928 45178237 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC6B 14 39147811 39170532 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC8 18 31829173 31953136 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 32 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAPPC9 8 139727725 140458579 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 27 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRARG1 17 1279663 1300987 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRAT1 3 108822698 108855005 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRDMT1 10 17142254 17202054 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 13 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRDN 6 123216339 123637093 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 43 4 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TREH 11 118657316 118679690 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 15 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TREM1 6 41267926 41286719 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TREM2 6 41158506 41163186 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TREML1 6 41149342 41154337 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TREML2 6 41190277 41201194 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TREML4 6 41228324 41238882 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRERF1 6 42224931 42452051 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 23 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TREX1 3 48465811 48467645 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TREX2 23 153444720 153470587 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRH 3 129974305 129977938 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRHDE 12 72087266 72670757 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 22 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRHR 8 109086621 109119584 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIAP1 12 120443961 120446412 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIB1 8 125430321 125438405 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIB2 2 12716889 12742734 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIB3 20 362835 397559 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 7 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIL 7 28953358 28958292 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 10 2 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM10 6 30151945 30160934 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 12 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM11 1 228393673 228406840 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM13 13 49995888 50020481 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM14 9 98069275 98119212 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 14 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM15 6 30163206 30172696 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM16 17 15627960 15684311 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM16L 17 18697998 18736118 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM17 1 228407940 228416861 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM2 4 153152342 153339320 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM21 11 4384897 4393696 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 9 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM22 11 5689689 5737089 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 13 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM23 5 65589680 65625975 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 15 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM24 7 138460334 138589993 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 21 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM25 17 56836387 56914080 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 23 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM26 6 30184455 30213427 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 11 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM27 6 28903002 28923989 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM28 19 58544091 58550722 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 16 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM29 11 120111275 120185529 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 14 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM3 11 6448613 6474459 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM31 6 30102897 30113106 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 9 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM32 9 116687302 116701300 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM33 1 114392777 114511160 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM34 11 5619764 5644398 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 11 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM35 8 27284887 27311319 FALSE 261 -0.0837604649753267 63 23201811 27432329 0.39968910724052 3 1 0.39968910724052 3 1 4230518 2 27 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM36 5 115124762 115180546 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM37 17 58982638 59106921 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 27 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM38 6 25962802 25991226 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM39 6 30326479 30343729 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM39-RPP21 6 30328907 30346854 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 14 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM4 7 99876958 99919600 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 11 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM40 6 30136108 30148735 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 6 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM41 5 181222499 181235809 FALSE 183 -0.449406845966543 39 180792977 181260799 NA 2 NA NA 2 NA 467822 NA 11 13 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM42 3 140678039 140701150 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM43 2 95592018 95599778 FALSE 72 -0.297431743288301 44 95106429 96195026 0.213873728132233 2 0 0.213873728132233 2 0 1088597 2 15 5 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM43B 2 95476967 95484731 FALSE 72 -0.297431743288301 44 95106429 96195026 0.213873728132233 2 0 0.213873728132233 2 0 1088597 2 15 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM44 11 35662805 35818007 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM45 1 117111060 117122587 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM46 1 155173787 155184971 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM47 17 75874161 75878575 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 11 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM48 11 55262182 55271119 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 6 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM49 11 89797655 89808575 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM49B 11 49027501 49038451 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 8 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM49C 11 90031106 90042025 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM49D1 11 89911111 89921767 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM49D2 11 89924064 89933063 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM5 11 5663557 5938619 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 59 11 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM50 7 73312539 73328082 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM51 11 55883297 55891810 FALSE 349 -0.681582297671407 28 55828029 56989546 0.220609740555404 0 0 0.220609740555404 0 0 1161517 0 35 9 3 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM51GP 11 48975324 48983826 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 9 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM52 5 181254417 181261139 FALSE 183 -0.449406845966543 39 180792977 181260799 NA 2 NA NA 2 NA 467822 NA 11 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM54 2 27282392 27307439 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM55 8 66126896 66175487 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM56 7 101085439 101097967 FALSE 243 -0.216974721306157 57 101087510 101616208 0.158317833115363 3 NA 0.158317833115363 3 NA 528698 NA 13 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM58 1 247857199 247878205 FALSE 46 -0.706609729922377 28 247491884 248388475 0.220609740555404 0 0 0.220609740555404 0 0 896591 0 33 9 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM59 3 160432445 160485773 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM6 11 5596109 5612958 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 11 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM6-TRIM34 11 5596725 5644398 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 22 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM60 4 165016458 165041744 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM61 4 164954446 164977668 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM62 1 33145402 33182059 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM63 1 26051304 26068436 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM64 11 89968502 89975228 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM64B 11 89869282 89876017 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM64C 11 49053714 49059112 FALSE 347 -0.584033628892346 30 47631635 55795567 0.37140042022976 1 0 0.37140042022976 1 0 8163932 1 32 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM65 17 75880335 75897003 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 9 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM66 11 8612037 8682694 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 25 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM67 1 231162112 231221556 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM68 11 4598672 4608259 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 10 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM69 15 44728988 44767829 FALSE 484 -0.0815687033557533 63 44565937 49422724 0.39968910724052 3 1 0.39968910724052 3 1 4856787 2 33 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM7 5 181193924 181205293 FALSE 183 -0.449406845966543 39 180792977 181260799 NA 2 NA NA 2 NA 467822 NA 11 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM71 3 32818018 32897826 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM72 16 31214021 31231537 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM73 7 75395063 75410996 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM74 7 72959485 72969466 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM77 11 89710299 89717872 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM8 10 102642310 102660680 FALSE 334 0.693568044718264 111 102503918 102657271 0.397448435712946 7 NA 0.397448435712946 7 NA 153353 NA 2 10 0 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIM9 14 50975262 51096061 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 14 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIML1 4 188139419 188147743 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 11 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIML2 4 188091273 188109603 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 12 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIO 5 14143702 14532128 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 67 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIOBP 22 37696988 37776556 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 41 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIP10 19 6737925 6751526 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 16 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIP11 14 91965991 92040896 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 34 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIP12 2 229763838 229923239 FALSE 105 -0.0449948418153149 69 226864700 232633981 0.39968910724052 3 1 0.39968910724052 3 1 5769281 2 55 46 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIP13 5 892643 919357 TRUE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIP4 15 64387748 64455303 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIP6 7 100867138 100873454 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 10 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIQK 8 92883530 93017673 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIR 19 12730640 12734775 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRIT1 1 39838110 39883511 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMO 9 97904489 97922570 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 8 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT1 19 13104902 13117567 FALSE 620 0.246971120530574 97 12876151 13116391 0.39968910724052 4 NA 0.39968910724052 4 NA 240240 NA 12 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT10A 4 99546709 99564032 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 8 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT10B 9 37753803 37778972 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT10C 3 101561862 101566446 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT11 6 125986430 126203817 FALSE 214 0.11719009388009 86 117379165 127119155 0.360033220093454 4 NA 0.360033220093454 4 NA 9739990 NA 31 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT112 11 64316460 64318084 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT12 8 124450820 124462150 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT13 1 100133150 100150497 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT1L 1 185118098 185157072 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT2A 22 20111866 20117392 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 14 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT2B 23 101009346 101052116 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT44 4 8436140 8493531 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 15 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT5 14 60971451 60981358 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 10 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT6 20 5937235 5950558 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT61A 14 103529184 103537073 FALSE 467 -0.166720648541046 62 102922761 103677490 0.235629703240478 3 NA 0.235629703240478 3 NA 754729 NA 13 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT61B 2 28849821 28870301 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 11 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMT9B 8 12945642 13031503 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 7 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRMU 22 46330875 46357340 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRNAU1AP 1 28553085 28578545 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRNP1 1 26993707 27000898 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRNT1 3 3126916 3150879 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRO 23 54920462 54931431 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 25 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TROAP 12 49323236 49331731 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TROVE2 1 193059422 193091777 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPA1 8 72019917 72075617 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 27 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPC1 3 142724074 142807888 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 15 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPC3 4 121879027 121951754 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 16 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPC4 13 37636636 37870425 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPC4AP 20 35002404 35092871 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPC5 23 111774315 112082776 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 20 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPC5OS 23 111876051 111903990 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPC6 11 101451564 101872562 FALSE 362 0.834718314991909 113 101029872 101453674 0.397448435712946 8 NA 0.397448435712946 8 NA 423802 NA 2 16 3 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPC7 5 136213320 136365545 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPM1 15 31001061 31161273 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 37 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPM2 21 44350163 44443081 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 37 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPM3 9 70529063 71446904 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 35 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPM4 19 49157741 49211836 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 29 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPM5 11 2404515 2423045 FALSE 341 0.150532842564489 86 2129151 2776033 0.360033220093454 4 NA 0.360033220093454 4 NA 646882 NA 11 26 4 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPM6 9 74722495 74888094 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 50 5 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPM7 15 50552473 50686815 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 44 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPM8 2 233917398 234019522 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 27 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPS1 8 115408496 115809673 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPT1 11 64223799 64226254 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPV1 17 3565444 3609411 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 18 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPV2 17 16415542 16437003 FALSE 544 -0.432476680468626 39 16223200 17212252 NA 2 NA NA 2 NA 989052 NA 14 17 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPV3 17 3510502 3557995 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 19 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPV4 12 109783085 109833401 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 19 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPV5 7 142908101 142933808 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 17 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRPV6 7 142871203 142885762 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 19 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRRAP 7 98877933 99050831 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 88 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRUB1 10 114938193 114977676 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TRUB2 9 128305161 128322742 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSACC 1 156337314 156346995 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSC1 9 132891348 132946874 TRUE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 62 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSC2 16 2047465 2089487 TRUE 508 0.427980297577669 103 2037459 2089430 0.397448435712946 5 NA 0.397448435712946 5 NA 51971 NA 4 68 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSC22D1 13 44432143 44577147 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSC22D2 3 150408335 150466431 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSC22D3 23 107713221 107777342 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSC22D4 7 100463359 100479279 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSEN15 1 184051651 184123978 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSEN2 3 12484432 12539623 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSEN34 19 54189938 54194536 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSEN54 17 75516060 75524739 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 12 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSFM 12 57782589 57808071 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 17 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSG101 11 18468336 18527232 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSGA10 2 98997261 99154964 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 22 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSGA10IP 11 65945445 65959963 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSGA13 7 130668648 130687432 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSHB 1 115029824 115034309 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSHR 14 80954989 81146302 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 33 10 TRUE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSHZ1 18 75210755 75289950 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 14 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSHZ2 20 52972407 53495330 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSHZ3 19 31274945 31349547 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSKS 19 49739753 49763330 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSKU 11 76782251 76798154 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSLP 5 111070062 111078024 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSN 2 121737103 121767853 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSNARE1 8 142212080 142403240 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSNAX 1 231528653 231566524 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSNAX-DISC1 1 231528653 231819244 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 21 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSNAXIP1 16 67806765 67832148 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 28 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN1 1 46175073 46185958 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN10 17 81637171 81648749 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN11 12 30926428 30996599 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN12 7 120787320 120858402 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 8 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN13 7 16753535 16784536 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 6 2 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN14 10 80454166 80533123 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN15 10 69451473 69507669 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN16 19 11296139 11326996 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN17 5 176647387 176659054 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 9 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN18 11 44726465 44932421 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN19 12 85014311 85036277 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN2 1 115048011 115089500 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN3 15 77041404 77083984 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN31 12 57738013 57750211 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN32 11 2301997 2318200 FALSE 341 0.150532842564489 86 2129151 2776033 0.360033220093454 4 NA 0.360033220093454 4 NA 646882 NA 11 11 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN33 7 129144892 129169697 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 8 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN4 11 842808 867116 FALSE 340 -0.275819008742104 48 193102 1956396 1 2 1 1 2 1 1763294 1 67 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN5 4 98470367 98658629 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN6 23 100627109 100639991 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN7 23 38561370 38688920 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN8 12 71125085 71441898 FALSE 415 0.0296903115421813 74 69585546 71157651 0.246063395031215 4 2 0.246063395031215 4 2 1572105 2 11 11 3 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPAN9 12 3077355 3286564 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPEAR 21 44497892 44711580 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 70 8 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPO 22 43151514 43163242 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPO2 6 41042554 41044337 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPOAP1 17 58301228 58328760 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 44 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPYL1 6 116276578 116279903 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPYL2 23 53082367 53088540 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 11 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPYL4 6 116249961 116254140 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPYL5 8 97273474 97277964 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSPYL6 2 54253184 54256272 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSR1 17 2322503 2337507 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSR2 23 54440401 54445487 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSR3 16 1349240 1351911 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSSC4 11 2400488 2403878 FALSE 341 0.150532842564489 86 2129151 2776033 0.360033220093454 4 NA 0.360033220093454 4 NA 646882 NA 11 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSSK1B 5 113432554 113435031 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSSK2 22 19130808 19132623 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 5 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSSK3 1 32351521 32364312 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSSK4 14 24205697 24208362 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSSK6 19 19512418 19515685 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TST 22 37010859 37020183 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSTA3 8 143612618 143618048 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSTD1 1 161037631 161038990 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSTD2 9 97600080 97633575 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TSTD3 6 99520693 99531918 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTBK1 6 43243680 43288259 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTBK2 15 42738734 42920809 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 22 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC1 5 160009113 160065543 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC12 11 113314529 113383544 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 21 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC13 1 230906243 230978875 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC14 3 180602130 180617828 FALSE 128 0.146934569885818 86 179242975 181712000 0.360033220093454 4 NA 0.360033220093454 4 NA 2469025 NA 14 19 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC16 9 127716066 127731600 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 19 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC17 11 43358932 43494933 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC19 17 15999380 16045015 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 29 1 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC21A 3 39107704 39138903 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 31 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC21B 2 165857475 165953843 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 34 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC22 1 54779712 54801267 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC23 15 99136323 99251223 FALSE 503 -0.114734071568888 63 98969684 101646805 0.39968910724052 3 1 0.39968910724052 3 1 2677121 2 17 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC23L 5 34838833 34899456 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC24 1 156579727 156586770 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC25 17 41930635 41965651 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC26 7 139133744 139191986 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC27 2 32628032 32821051 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 20 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC28 22 27978014 28679865 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 44 6 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC29 4 146706638 146945882 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC3 21 37073226 37203112 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 54 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC30A 2 177612992 177618966 FALSE 89 -0.503631193706026 35 177420363 178547579 0.252021069663427 1 0 0.252021069663427 1 0 1127216 1 11 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC30B 2 177548998 177553014 FALSE 89 -0.503631193706026 35 177420363 178547579 0.252021069663427 1 0 0.252021069663427 1 0 1127216 1 11 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC31 2 74483073 74494886 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC32 2 19896643 19901986 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 3 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC33 5 40512333 40755975 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC34 1 2635976 2801717 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC36 11 118527472 118531197 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 4 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC37 5 95461755 95555007 FALSE 173 -0.00676144619457997 73 90854119 96783148 0.249162995977636 4 2 0.249162995977636 4 2 5929029 2 20 39 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC38 22 46267961 46294008 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC39A 1 51287258 51345116 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC39B 9 15163622 15307360 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC39C 18 23992773 24135610 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 17 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC4 1 54715822 54742657 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC5 14 20256558 20305994 FALSE 445 -0.422756368010856 37 19428700 20299459 0.160356091311466 1 0 0.160356091311466 1 0 870759 1 18 10 2 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC6 14 37595847 38041442 FALSE 450 0.167074609688432 89 34810987 44505064 0.396348860884268 4 1 0.396348860884268 4 1 9694077 3 30 44 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC7A 2 46916157 47076137 FALSE 59 -0.32871660107588 46 46484402 47170815 NA 2 NA NA 2 NA 686413 NA 11 23 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC7B 14 90524564 90816479 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC8 14 88824153 88881078 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC9 14 70641787 70675360 FALSE 456 -0.528554564313879 34 70049041 70667652 0.312402751065481 1 0 0.312402751065481 1 0 618611 1 8 4 0 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC9B 19 40216058 40218399 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTC9C 11 62728069 62740293 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTF1 9 132375548 132406851 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 17 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTF2 1 117060303 117107453 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 26 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTI1 20 37983007 38033468 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTI2 8 33473386 33513601 FALSE 265 -1.01258309430305 21 32769486 33503438 0.383364652758899 0 0 0.383364652758899 0 0 733952 0 3 18 2 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTK 6 80003887 80042527 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 21 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTL 2 112482154 112541739 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTLL1 22 43039644 43089428 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTLL10 1 1173884 1197935 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 15 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTLL11 9 121821928 122093606 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 15 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTLL12 22 43166622 43187133 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTLL2 6 167325071 167359503 FALSE 229 0.162833614043837 88 167136718 168061946 0.3914153250654 4 2 0.3914153250654 4 2 925228 2 9 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTLL3 3 9808086 9855138 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 27 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTLL4 2 218710845 218755416 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 23 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTLL5 14 75633625 75955078 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 43 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTLL6 17 48762235 48817214 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 19 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTLL7 1 83865028 83999150 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTLL8 22 50015123 50056935 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTLL9 20 31870702 31944963 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTN 2 178525989 178830802 FALSE 89 -0.503631193706026 35 177420363 178547579 0.252021069663427 1 0 0.252021069663427 1 0 1127216 1 11 625 30 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTPA 8 63048553 63086053 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTPAL 20 44475886 44494603 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTR 18 31557010 31599021 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTYH1 19 54415219 54436900 FALSE 678 -0.174810850979212 59 54220766 54783783 0.22538042745788 3 0 0.22538042745788 3 0 563017 3 20 16 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTYH2 17 74213514 74262020 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 17 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TTYH3 7 2631951 2664802 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 15 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUB 11 8019244 8106112 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 16 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBA1A 12 49184796 49189324 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBA1B 12 49127782 49131397 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBA1C 12 49188736 49274603 FALSE 405 -0.0928182214525397 64 49065122 51912448 0.313405470508204 3 1 0.313405470508204 3 1 2847326 2 53 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBA3C 13 19173770 19181852 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBA3D 2 131476093 131482934 FALSE 84 -0.292186070013859 45 130656603 132790182 1 2 1 1 2 1 2133579 1 16 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBA3E 2 130191743 130198461 FALSE 82 -0.261392512927958 50 127719285 130373216 1 2 1 1 2 1 2653931 1 15 9 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBA4A 2 219249711 219278170 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBA4B 2 219253243 219272188 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBA8 22 18110331 18146554 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBAL3 10 5393098 5404830 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBB 6 30720201 30725426 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBB1 20 59019254 59026654 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBB2A 6 3153669 3157526 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 7 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBB2B 6 3224261 3231730 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBB3 16 89921392 89938761 FALSE 535 0.126990432456591 86 89733549 90075852 0.360033220093454 4 NA 0.360033220093454 4 NA 342303 NA 12 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBB4A 19 6494319 6502848 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBB4B 9 137241213 137243707 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBB6 18 12307669 12344320 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBB8 10 46892 74163 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBB8P12 18 47390 49557 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 7 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBD1 17 59859482 59892945 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBE1 6 112070777 112087529 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 12 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBG1 17 42609676 42615234 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBG2 17 42659305 42667006 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 12 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBGCP2 10 133278630 133312337 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 24 5 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBGCP3 13 112485005 112588205 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBGCP4 15 43369221 43409771 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 37 5 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBGCP5 15 22983192 23039673 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 25 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUBGCP6 22 50217689 50244992 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 33 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUFM 16 28842411 28846408 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUFT1 1 151540305 151583583 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TULP1 6 35497874 35512938 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TULP2 19 48880965 48898733 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TULP3 12 2877223 2941140 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TULP4 6 158232236 158511828 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUSC1 9 25676389 25678440 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUSC2 3 50320027 50328251 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUSC3 8 15417215 15766649 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUT1 11 62575045 62592177 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUT4 1 52408282 52553487 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 43 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TUT7 9 86287733 86354454 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 33 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TVP23A 16 10760919 10818794 FALSE 516 0.371260792805015 100 9753602 11556542 0.397448435712946 5 2 0.397448435712946 5 2 1802940 3 17 11 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TVP23B 17 18780995 18806714 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 8 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TVP23C 17 15502264 15563595 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TVP23C-CDRT4 17 15436021 15563561 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TWF1 12 43793723 43806375 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TWF2 3 52228610 52239260 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TWIST1 7 19020991 19117672 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 3 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TWIST2 2 238848032 238910543 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 2 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TWISTNB 7 19695462 19709087 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 6 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TWNK 10 100987367 100994401 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TWSG1 18 9334767 9402420 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXK 4 48066393 48134256 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXLNA 1 32179686 32198285 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXLNB 6 139240061 139292139 FALSE 220 0.0543375783167098 82 138298662 142443515 0.298111653356898 4 NA 0.298111653356898 4 NA 4144853 NA 16 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXLNG 23 16786427 16844519 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 12 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXN 9 110243811 110256640 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXN2 22 36467036 36482030 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNDC11 16 11679080 11742878 FALSE 517 -0.0362540617203195 72 11676092 11941161 0.211382613745547 4 NA 0.211382613745547 4 NA 265069 NA 6 20 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNDC12 1 52020131 52056171 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNDC15 5 134873803 134901525 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNDC16 14 52430590 52552522 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 20 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNDC17 17 6640758 6644541 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNDC2 18 9885726 9889275 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNDC5 6 7881517 7910814 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNDC8 9 110303521 110337884 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNDC9 2 99318982 99340702 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNIP 1 145992435 145996600 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNL1 18 56597208 56651600 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNL4A 18 79970811 80033949 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNL4B 16 72044289 72094431 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 21 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNRD1 12 104215779 104350305 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 23 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNRD2 22 19875517 19941992 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 20 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TXNRD3 3 126571779 126655155 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TYK2 19 10350529 10380676 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 25 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TYMP 22 50525752 50530056 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TYMS 18 657604 673578 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TYR 11 89177452 89295759 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TYRO3 15 41557675 41583586 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 22 3 TRUE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TYROBP 19 35904401 35908295 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TYRP1 9 12685439 12710290 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TYSND1 10 70137981 70146676 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TYW1 7 66995173 67239519 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 18 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TYW1B 7 72558744 72828198 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TYW3 1 74733152 74766678 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 TYW5 2 199929975 199955736 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 U2AF1 21 43092956 43107587 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 U2AF1L4 19 35742464 35745445 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 6 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 U2AF2 19 55654146 55674715 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 U2SURP 3 142964497 143060546 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 28 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 U52112.1 23 153872221 153909223 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UACA 15 70654554 70763593 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 30 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UAP1 1 162561506 162599842 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UAP1L1 9 137077501 137084539 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBA1 23 47190861 47215128 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 26 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBA2 19 34428352 34471251 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 17 0 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBA3 3 69054730 69080408 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBA5 3 132654446 132678097 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 15 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBA52 19 18571730 18577550 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBA6 4 67612652 67701179 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBA7 3 49805207 49813946 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 23 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBAC1 9 135932969 135961380 FALSE 308 -0.252007328361237 49 134730507 136493842 0.264691231031417 2 0 0.264691231031417 2 0 1763335 2 30 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBAC2 13 99200774 99386434 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBALD1 16 4608883 4615027 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBALD2 17 76265202 76271299 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBAP1 9 34179005 34252523 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBAP1L 15 65092770 65115197 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBAP2 9 33921693 34048949 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 29 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBAP2L 1 154220179 154271510 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 31 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBASH3A 21 42403447 42447681 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 16 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBASH3B 11 122655675 122814473 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 14 1 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBB 17 16380798 16382745 FALSE 544 -0.432476680468626 39 16223200 17212252 NA 2 NA NA 2 NA 989052 NA 14 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBC 12 124911604 124917368 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBD 6 29555515 29559925 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2A 23 119574467 119591083 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2B 5 134371179 134391992 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2C 20 45812576 45816957 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2D1 10 58334975 58370753 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2D2 5 139526431 139628433 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2D3 4 102794383 102868896 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2D4 7 43926438 43956136 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2E1 3 23805903 23891316 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2E2 3 23203020 23591793 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2E3 2 180967248 181076585 FALSE 94 0.355754312996103 101 179443289 181538825 0.397448435712946 5 NA 0.397448435712946 5 NA 2095536 NA 5 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2F 2 237966827 238042782 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 10 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2F-SCLY 2 237967014 238099412 FALSE 108 0.110976643247082 85 237336320 240042378 0.358205813304787 4 1 0.358205813304787 4 1 2706058 3 22 22 3 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2G1 17 4269259 4366628 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2G2 21 44768580 44802019 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2H 7 129830732 129952949 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2I 16 1308880 1327018 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2J1 6 89326625 89352848 FALSE 202 -0.0287117028264841 72 88941203 89712641 0.211382613745547 4 NA 0.211382613745547 4 NA 771438 NA 11 9 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2J2 1 1253909 1273885 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 7 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2K 4 39698044 39782792 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2L3 22 21549447 21624034 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2L5 13 30422488 30428616 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2L6 11 57551656 57568284 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2M 19 58555712 58558960 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2N 12 93405673 93442262 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2O 17 76389451 76453206 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 25 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2Q1 1 154548577 154559028 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2Q2 15 75843285 75901078 FALSE 492 -0.226543951235523 57 75468765 76202218 0.158317833115363 3 NA 0.158317833115363 3 NA 733453 NA 10 14 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2Q2L 15 84172490 84182234 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2QL1 5 6448623 6494909 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2R2 9 33817567 33920404 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2S 19 55399745 55407777 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 5 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2T 1 202331657 202341980 FALSE 37 0.422972367154532 103 202010393 202741677 0.397448435712946 5 NA 0.397448435712946 5 NA 731284 NA 9 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2U 1 64203627 64267368 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2V1 20 50081124 50115959 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2V2 8 48008400 48064708 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2W 8 73780097 73878910 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE2Z 17 48908369 48929056 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 8 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE3A 15 25333728 25439056 FALSE 475 -0.30523055610303 44 20536449 32696492 0.213873728132233 2 0 0.213873728132233 2 0 12160043 2 59 18 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE3B 12 109477402 109536705 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 28 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE3C 7 157138913 157269372 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 23 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE3D 6 82892398 83065841 FALSE 199 -0.0913295858671715 63 70168088 87088108 0.39968910724052 3 1 0.39968910724052 3 1 16920020 2 59 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE4A 11 118359585 118399211 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBE4B 1 10032832 10181239 FALSE 9 0.404569097613007 103 9730551 11046507 0.397448435712946 5 NA 0.397448435712946 5 NA 1315956 NA 18 29 3 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBFD1 16 23557362 23574389 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBIAD1 1 11273206 11296049 FALSE 10 -0.472587818930969 39 11046896 11690703 NA 2 NA NA 2 NA 643807 NA 11 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBL3 13 29764371 29850684 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBL4A 23 154483717 154486670 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBL4B 1 110112468 110113945 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBL5 19 9827892 9830115 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 4 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBL7 15 74445977 74461182 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 11 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBLCP1 5 159263081 159286040 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBN1 16 4846665 4882360 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBN2 7 139230356 139308236 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 26 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBOX5 20 3107573 3160196 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBP1 3 33388336 33441371 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBQLN1 9 83659963 83708203 FALSE 293 -0.328784635523128 44 81990823 84670815 0.213873728132233 2 0 0.213873728132233 2 0 2679992 2 12 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBQLN2 23 56563639 56567868 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBQLN3 11 5507300 5509985 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 8 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBQLN4 1 156035301 156053794 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBQLNL 11 5514393 5516705 FALSE 343 -0.656684307752265 28 4094968 6027130 0.220609740555404 0 0 0.220609740555404 0 0 1932162 0 75 6 3 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBR1 15 42942897 43106113 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 49 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBR2 6 42564062 42693504 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 49 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBR3 2 169827458 170084131 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 42 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBR4 1 19074506 19210276 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 113 9 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBR5 8 102253012 102412841 FALSE 272 0.543983612780906 105 102232195 102651485 0.397448435712946 6 NA 0.397448435712946 6 NA 419290 NA 4 69 6 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBR7 14 93207056 93229215 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBTD1 10 97498868 97571209 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBTD2 5 172209640 172284071 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBTF 17 44205033 44221626 FALSE 560 -0.265990704178671 47 43642044 45257153 0.205658471801404 2 0 0.205658471801404 2 0 1615109 2 47 19 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBTFL1 11 90085950 90087131 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBXN1 11 62676498 62679117 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBXN10 1 20186085 20196048 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBXN11 1 26281328 26318363 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBXN2A 2 23927285 24004909 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 6 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBXN2B 8 58411264 58451501 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBXN4 2 135741619 135785055 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBXN6 19 4444999 4457822 FALSE 601 -0.141945803430174 62 4306253 4817986 0.235629703240478 3 NA 0.235629703240478 3 NA 511733 NA 17 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBXN7 3 196347662 196432474 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UBXN8 8 30732247 30767006 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 8 0 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UCHL1 4 41256413 41268455 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UCHL3 13 75549480 75606020 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UCHL5 1 193012250 193060080 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UCK1 9 131523801 131531268 FALSE 304 -0.0894788427480187 66 130893399 133474083 0.330876988437597 3 0 0.330876988437597 3 0 2580684 3 42 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UCK2 1 165827531 165911618 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UCKL1 20 63939829 63956415 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UCMA 10 13221767 13234334 FALSE 315 0.228244116357697 94 12828838 14820149 0.39968910724052 4 NA 0.39968910724052 4 NA 1991311 NA 13 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UCN 2 27307400 27308445 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UCN2 3 48561727 48563773 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 2 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UCN3 10 5365009 5374692 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 3 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UCP1 4 140559434 140568805 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UCP2 11 73974667 73983307 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UCP3 11 74000281 74009435 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UEVLD 11 18529609 18588747 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UFC1 1 161152776 161158856 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UFD1 22 19449910 19479215 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UFL1 6 96521595 96555276 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UFM1 13 38349849 38363619 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UFSP1 7 100888723 100889718 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 2 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UFSP2 4 185399540 185425985 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGCG 9 111896766 111935369 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGDH 4 39498755 39528311 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGGT1 2 128091200 128195677 FALSE 82 -0.261392512927958 50 127719285 130373216 1 2 1 1 2 1 2653931 1 15 41 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGGT2 13 95801580 96053482 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 39 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGP2 2 63840940 63891562 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT1A1 2 233760248 233773299 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 18 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT1A10 2 233636454 233773305 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 48 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT1A3 2 233729108 233773299 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 24 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT1A4 2 233718778 233773299 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 28 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT1A5 2 233712992 233773299 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 32 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT1A6 2 233691607 233773300 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 36 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT1A7 2 233681938 233773299 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 40 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT1A8 2 233617645 233773310 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 52 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT1A9 2 233671853 233773300 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 44 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT2A1 4 69588417 69653249 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT2A2 4 69589309 69639642 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT2A3 4 68928463 68951791 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT2B10 4 68815993 68831196 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT2B11 4 69199951 69214731 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT2B15 4 68646630 68670628 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT2B17 4 68537184 68568527 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT2B28 4 69280499 69295050 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT2B4 4 69480165 69526014 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT2B7 4 69051363 69112987 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT3A1 5 35951010 36001028 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT3A2 5 36035017 36071358 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UGT8 4 114598455 114678224 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UHMK1 1 162497251 162529629 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UHRF1 19 4903080 4962154 FALSE 602 -0.510436259887525 35 4818366 5153517 0.252021069663427 1 0 0.252021069663427 1 0 335151 1 5 18 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UHRF1BP1 6 34792015 34883138 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 31 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UHRF1BP1L 12 100028455 100142848 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 28 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UHRF2 9 6413151 6507054 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UIMC1 5 176905005 177022633 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 16 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ULBP1 6 149964007 149973710 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ULBP2 6 149942000 149949235 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 6 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ULBP3 6 150063150 150069095 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ULK1 12 131894651 131923167 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 30 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ULK2 17 19770829 19867936 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 29 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ULK3 15 74836116 74843346 FALSE 490 -0.181574753772834 59 67202874 75368514 0.22538042745788 3 0 0.22538042745788 3 0 8165640 3 82 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ULK4 3 41246599 41962430 FALSE 117 0.540932046993509 105 41194895 41246976 0.397448435712946 6 NA 0.397448435712946 6 NA 52081 NA 2 37 3 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UMAD1 7 7640711 7968020 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UMOD 16 20333052 20356301 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UMODL1 21 42062959 42143453 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 31 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UMPS 3 124730366 124749273 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC119 17 28546707 28552668 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC119B 12 120710435 120723640 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC13A 19 17601328 17688365 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 49 1 TRUE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC13B 9 35161992 35405338 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 42 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC13C 15 53978201 54633414 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 45 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC13D 17 75827225 75844717 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 30 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC45A 15 90930180 90954093 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 27 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC45B 17 35147817 35189345 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 21 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC50 2 98608579 98618515 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC5A 5 176810477 176880898 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 18 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC5B 10 71212570 71302864 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC5C 4 95162504 95549206 FALSE 150 -0.0806272377459175 63 94278729 105233452 0.39968910724052 3 1 0.39968910724052 3 1 10954723 2 42 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC5CL 6 41026911 41039217 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC5D 8 35235457 35796550 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 21 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC79 14 93333219 93707876 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 61 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC80 2 209771993 209999300 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 68 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC93A 6 167271169 167316019 FALSE 229 0.162833614043837 88 167136718 168061946 0.3914153250654 4 2 0.3914153250654 4 2 925228 2 9 10 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNC93B1 11 67991104 68004982 FALSE 355 -0.0617979544410303 69 66870445 69427694 0.39968910724052 3 1 0.39968910724052 3 1 2557249 2 50 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNCX 7 1232907 1237318 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNG 12 109097574 109110992 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 8 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNK 17 75784771 75825799 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 18 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UNKL 16 1363205 1414751 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 19 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UPB1 22 24494107 24528390 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UPF1 19 18831938 18868236 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UPF2 10 11920022 12043170 FALSE 314 0.0797787605968275 82 10796933 12825599 0.298111653356898 4 NA 0.298111653356898 4 NA 2028666 NA 10 26 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UPF3A 13 114281584 114305817 FALSE 443 -0.0470174303582716 68 110166288 114326281 0.39968910724052 3 1 0.39968910724052 3 1 4159993 2 35 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UPF3B 23 119805311 119852998 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UPK1A 19 35666516 35678483 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 8 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UPK1B 3 119173517 119205153 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UPK2 11 118925164 118958559 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UPK3A 22 45284982 45295874 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UPK3B 7 76510428 76516521 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UPK3BL1 7 102637025 102642791 FALSE 246 0.0245535265384991 73 102258231 105268761 0.249162995977636 4 2 0.249162995977636 4 2 3010530 2 35 1 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UPP1 7 48088628 48108733 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UPP2 2 157876702 158136154 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UPRT 23 75274085 75304600 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UQCC1 20 35302566 35412141 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UQCC2 6 33694293 33711727 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UQCC3 11 62670273 62673687 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UQCR10 22 29767369 29770413 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 3 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UQCR11 19 1597172 1605490 FALSE 589 -0.44786516347233 39 1398963 1609436 NA 2 NA NA 2 NA 210473 NA 14 2 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UQCRB 8 96225920 96235634 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UQCRC1 3 48599002 48610976 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UQCRC2 16 21952660 21983660 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UQCRFS1 19 29205321 29213541 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UQCRH 1 46303631 46316776 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UQCRHL 1 15807169 15809348 FALSE 13 0.427503188463988 102 13475948 15876410 0.397448435712946 5 2 0.397448435712946 5 2 2400462 3 21 2 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UQCRQ 5 132866560 132868031 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 URAD 13 27977714 27988654 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 URB1 21 32311018 32393026 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 47 8 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 URB2 1 229626234 229660199 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 URGCP 7 43875894 43926411 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 URGCP-MRPS24 7 43866558 43906589 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 URI1 19 29923644 30016608 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 15 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 URM1 9 128371319 128392016 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UROC1 3 126481281 126517773 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UROD 1 45012147 45015575 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UROS 10 125784980 125823285 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USB1 16 57999546 58021618 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USE1 19 17215346 17219829 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 8 1 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USF1 1 161039251 161045977 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USF2 19 35268978 35279821 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USF3 3 113648385 113696646 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USH1C 11 17493895 17544416 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USH1G 17 74916084 74923256 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USH2A 1 215622894 216423396 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 98 7 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USHBP1 19 17249176 17282786 FALSE 630 0.178025989322381 87 16847142 17610017 0.206344716318008 6 3 0.206344716318008 6 3 762875 3 30 28 0 FALSE AMP (BALANCED) suppress_likely_unfocal_large_gain 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USO1 4 75724593 75814286 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP1 1 62436297 62451804 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP10 16 84699978 84779922 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 19 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP11 23 47232690 47248328 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 23 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP12 13 27066142 27171896 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP13 3 179652755 179789401 FALSE 128 0.146934569885818 86 179242975 181712000 0.360033220093454 4 NA 0.360033220093454 4 NA 2469025 NA 14 21 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP14 18 158383 214629 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP15 12 62260338 62417431 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 26 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP16 21 29024629 29054488 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 19 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP17L1 8 7332387 7333979 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP17L10 4 9210657 9212608 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP17L11 4 9215405 9217356 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 1 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP17L15 4 9234385 9236334 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP17L17 4 9243879 9245830 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 2 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP17L18 4 9248630 9250581 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 3 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP17L2 8 12137168 12139077 FALSE 259 -1.47337286372647 13 11974570 12191811 0.39968910724052 0 0 0.39968910724052 0 0 217241 0 8 7 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP17L22 4 9267619 9269570 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 2 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP17L4 8 7337115 7338707 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP17L7 8 12132417 12134438 FALSE 259 -1.47337286372647 13 11974570 12191811 0.39968910724052 0 0 0.39968910724052 0 0 217241 0 8 7 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP18 22 18149899 18177397 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP19 3 49108046 49120938 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 29 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP2 11 119355215 119381726 FALSE 371 -0.0720027620955921 67 119309875 122796188 0.31995059840763 3 NA 0.31995059840763 3 NA 3486313 NA 21 16 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP20 9 129834698 129881838 FALSE 302 -0.0534546983322568 71 129147457 130703746 0.212208033369562 4 0 0.212208033369562 4 0 1556289 4 19 26 3 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP21 1 161159450 161165723 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP22 17 20999593 21043760 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 13 0 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP24 1 55066359 55215113 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 70 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP25 21 15730025 15880069 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP26 23 133024631 133097109 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP27X 23 49879948 49882565 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP28 11 113797874 113875570 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP29 19 57119138 57131926 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 12 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP3 15 63504511 63594640 FALSE 487 0.296385928010631 99 61991730 63677860 0.361681390833996 5 NA 0.361681390833996 5 NA 1686130 NA 13 15 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP30 12 109023089 109088026 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 14 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP31 16 23061406 23149270 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 23 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP32 17 60179094 60422470 FALSE 566 -0.174889495343407 59 59893017 62675893 0.22538042745788 3 0 0.22538042745788 3 0 2782876 3 20 36 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP33 1 77695987 77759852 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP34 2 61187463 61470769 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 87 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP35 11 78188812 78214711 FALSE 359 -0.0312825226716548 68 76659618 90202925 0.39968910724052 3 1 0.39968910724052 3 1 13543307 2 61 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP36 17 78787381 78841441 FALSE 569 -0.194513493268614 57 78571250 80088075 0.158317833115363 3 NA 0.158317833115363 3 NA 1516825 NA 16 23 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP37 2 218450251 218568361 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP38 4 143184917 143223830 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP39 2 85602856 85649282 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 20 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP4 3 49277831 49340712 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 22 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP40 2 233475520 233566782 FALSE 107 -0.01179284805339 73 232974927 237334821 0.249162995977636 4 2 0.249162995977636 4 2 4359894 2 29 33 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP41 22 20350578 20390758 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 11 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP42 7 6104884 6161564 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 24 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP43 17 9644698 9729691 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 20 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP44 12 95516560 95551490 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 10 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP45 6 99432379 99521728 FALSE 205 -0.11783089378724 63 95586517 106060754 0.39968910724052 3 1 0.39968910724052 3 1 10474237 2 27 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP46 4 52590972 52659335 FALSE 145 -0.255465332866297 51 48565705 52745352 NA 2 NA NA 2 NA 4179647 NA 10 10 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP47 11 11841423 11959323 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 33 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP48 1 21678298 21783606 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 27 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP49 6 41789896 41895361 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP5 12 6852128 6866632 FALSE 382 0.198939751856543 94 6823973 7665848 0.39968910724052 4 NA 0.39968910724052 4 NA 841875 NA 25 21 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP50 15 50500562 50546708 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP51 23 55484616 55489202 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 9 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP53 4 119212587 119295517 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 21 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP54 10 73497538 73625953 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 31 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP6 17 5116438 5175034 FALSE 537 -0.704833888728741 29 5091667 5391656 0.39968910724052 1 0 0.39968910724052 1 0 299989 1 7 33 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP6NL 10 11453946 11611754 FALSE 314 0.0797787605968275 82 10796933 12825599 0.298111653356898 4 NA 0.298111653356898 4 NA 2028666 NA 10 20 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP7 16 8892094 8964514 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 32 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP8 15 50424380 50514419 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USP9X 23 41085635 41236579 FALSE 709 -0.360421027642709 43 40084126 41229701 1 1 0 1 1 0 1145575 1 6 51 0 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 USPL1 13 30617693 30660770 FALSE 431 -0.241905473269828 48 28662493 32231176 1 2 1 1 2 1 3568683 1 16 17 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UST 6 148747328 149076990 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 10 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTF1 10 133230274 133231558 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTP11 1 38009258 38024824 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTP14A 23 129906121 129929761 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTP14C 13 52024691 52033600 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTP15 5 73565443 73583377 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 12 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTP18 17 51260528 51297936 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTP20 12 101280109 101386616 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 65 5 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTP23 8 116766503 116849463 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTP25 1 209828007 209857565 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTP3 4 70688479 70690551 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTP4 16 69131291 69231130 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTP6 17 31860899 31901765 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTRN 6 144285701 144853034 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 77 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTS2 1 7843083 7853512 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTS2B 3 191267168 191330536 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UTS2R 17 82374230 82375586 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UVRAG 11 75815167 76143195 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UVSSA 4 1347266 1395992 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 21 6 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UXS1 2 106093303 106194339 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 15 1 TRUE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 UXT 23 47651798 47659161 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 6 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAC14 16 70687439 70801161 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 19 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAMP1 12 6462237 6470987 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAMP2 17 8159149 8163546 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAMP3 1 7771269 7781432 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAMP4 1 171700160 171742247 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAMP5 2 85584408 85593412 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 3 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAMP8 2 85561562 85582031 FALSE 69 0.056731040620248 80 74536874 86790866 0.224978670039217 5 2 0.224978670039217 5 2 12253992 3 51 3 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VANGL1 1 115641953 115698224 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VANGL2 1 160400586 160428678 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAPA 18 9914002 9960021 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAPB 20 58389122 58451101 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VARS 6 31777518 31795953 FALSE 192 0.00493836391948355 77 31761776 31933922 0.252310779181821 4 NA 0.252310779181821 4 NA 172146 NA 16 27 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VARS2 6 30908242 30926459 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 43 8 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VASH1 14 76762189 76783015 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 9 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VASH2 1 212950520 212992037 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VASN 16 4371848 4383528 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VASP 19 45506579 45526983 FALSE 662 -0.0696905493900657 66 45468602 46850126 0.330876988437597 3 0 0.330876988437597 3 0 1381524 3 46 13 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAT1 17 43014605 43025123 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAT1L 16 77788530 77980107 FALSE 530 0.0863261484312413 82 76522085 80684905 0.298111653356898 4 NA 0.298111653356898 4 NA 4162820 NA 12 11 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAV1 19 6772714 6857366 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 27 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAV2 9 133761894 133992604 FALSE 306 -0.140346870455269 62 133636322 134157948 0.235629703240478 3 NA 0.235629703240478 3 NA 521626 NA 6 31 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAV3 1 107571160 107965144 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 28 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAX1 10 117128521 117138301 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VAX2 2 70900590 70965373 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 19 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VBP1 23 155197007 155239817 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VCAM1 1 100719742 100739045 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VCAN 5 83471465 83582303 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 47 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VCL 10 73995193 74121363 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VCP 9 35056064 35073249 FALSE 287 -0.318915334733881 44 22010833 36828293 0.213873728132233 2 0 0.213873728132233 2 0 14817460 2 100 18 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VCPIP1 8 66628487 66667217 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VCPKMT 14 50108632 50116600 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 6 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VCX 23 7842262 7844143 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 4 2 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VCX2 23 8169944 8171267 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 2 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VCX3A 23 6533618 6535118 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 3 2 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VCX3B 23 8464830 8466510 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 4 2 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VDAC1 5 133971915 134005133 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VDAC2 10 75210154 75231448 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VDAC3 8 42391624 42405897 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VDR 12 47841537 47943048 FALSE 401 0.570076889856971 105 47720770 47968206 0.397448435712946 6 NA 0.397448435712946 6 NA 247436 NA 6 11 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VEGFA 6 43770184 43786487 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 26 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VEGFB 11 64234538 64238793 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VEGFC 4 176683538 176792727 FALSE 157 0.0251014068813815 77 176192989 182751835 0.252310779181821 4 NA 0.252310779181821 4 NA 6558846 NA 7 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VEGFD 23 15345591 15384376 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 7 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VENTX 10 133237404 133241929 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 5 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VEPH1 3 157259742 157533619 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 23 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VEZF1 17 57971547 57988259 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VEZT 12 95217746 95302790 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 21 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VGF 7 101162509 101165593 FALSE 243 -0.216974721306157 57 101087510 101616208 0.158317833115363 3 NA 0.158317833115363 3 NA 528698 NA 13 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VGLL1 23 136532152 136556807 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VGLL2 6 117265558 117273565 FALSE 211 0.437218059892028 102 116922097 117331289 0.397448435712946 5 2 0.397448435712946 5 2 409192 3 4 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VGLL3 3 86876388 86991119 FALSE 121 -0.0206780540273211 77 75738958 89482041 0.252310779181821 4 NA 0.252310779181821 4 NA 13743083 NA 14 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VGLL4 3 11556070 11771350 FALSE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VHL 3 10141008 10152220 TRUE 111 -0.205033804353539 54 319825 12187515 0.159525970813345 3 0 0.159525970813345 3 0 11867690 3 58 16 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VHLL 1 156298624 156299299 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 2 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VIL1 2 218419092 218453295 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VILL 3 37988059 38007188 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 22 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VIM 10 17228259 17237593 FALSE 316 -0.125734155176116 64 14825620 26860871 0.313405470508204 3 1 0.313405470508204 3 1 12035251 2 57 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VIP 6 152750798 152759765 FALSE 224 -0.117433393604286 66 152211521 156776133 0.330876988437597 3 0 0.330876988437597 3 0 4564612 3 15 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VIPAS39 14 77426675 77457952 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 19 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VIPR1 3 42489299 42537573 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VIPR2 7 159028175 159144957 FALSE 257 0.0628459934565962 82 157576685 159144789 0.298111653356898 4 NA 0.298111653356898 4 NA 1568104 NA 5 15 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VIRMA 8 94487693 94553529 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 33 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VIT 2 36696690 36814792 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 17 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VKORC1 16 31090842 31095980 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VKORC1L1 7 65873166 65959563 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VLDLR 9 2621834 2660053 FALSE 281 -0.150462187040168 62 711236 2838509 0.235629703240478 3 NA 0.235629703240478 3 NA 2127273 NA 8 20 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VMA21 23 151396515 151409364 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VMAC 19 5904858 5910853 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VMO1 17 4785285 4786433 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VMP1 17 59707192 59842255 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VN1R1 19 57454790 57457142 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 5 1 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VN1R2 19 53258292 53261837 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VN1R4 19 53266676 53267723 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VNN1 6 132681590 132714049 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VNN2 6 132743870 132763459 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VNN3 6 132722787 132734765 FALSE 216 -0.00231637064153856 76 127149862 135054722 0.39968910724052 3 1 0.39968910724052 3 1 7904860 2 45 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VOPP1 7 55436056 55572988 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPREB1 22 22244675 22245515 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPREB3 22 23752743 23754468 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS11 11 119067692 119081978 FALSE 369 -0.122319017859 67 118527576 119195404 0.31995059840763 3 NA 0.31995059840763 3 NA 667828 NA 26 18 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS13A 9 77177353 77421541 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 80 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS13B 8 99013266 99877580 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 74 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS13C 15 61852389 62060473 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 93 5 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS13D 1 12230030 12512047 FALSE 11 0.345955975122579 100 11691624 12725782 0.397448435712946 5 2 0.397448435712946 5 2 1034158 3 18 83 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS16 20 2840703 2866732 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS18 15 40894430 40903975 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS25 17 42773436 42779599 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS26A 10 69123512 69172861 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 10 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS26B 11 134224645 134247792 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS26C 21 37223420 37267919 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS28 8 144423601 144428563 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS29 12 110491097 110502117 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 5 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS33A 12 122229564 122266521 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS33B 15 90998416 91022603 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS35 16 46656132 46689518 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS35L 16 19555240 19706793 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 32 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS36 13 52412602 52450628 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 14 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS37A 8 17246571 17302427 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 13 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS37B 12 122865328 122896444 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS37C 11 61130256 61161617 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 6 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS37D 7 73667825 73672112 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS39 15 42158701 42208316 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 26 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS41 7 38722963 38932394 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 29 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS45 1 150067279 150145329 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS4A 16 69311356 69326939 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS4B 18 63389190 63422483 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS50 7 93232340 93361121 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 29 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS51 11 65089324 65111860 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS52 6 33250272 33272047 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 20 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS53 17 508668 721717 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 22 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS54 2 63892146 64019072 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 25 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS72 1 151169987 151195321 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS8 3 184812143 185052614 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 48 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VPS9D1 16 89707134 89720986 FALSE 534 -0.234744649087081 51 89587069 89729295 NA 2 NA NA 2 NA 142226 NA 8 17 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VRK1 14 96797304 96931722 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VRK2 2 57907629 58159920 FALSE 62 0.0521275041360271 80 47832473 60797055 0.224978670039217 5 2 0.224978670039217 5 2 12964582 3 35 16 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VRK3 19 49976467 50025946 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VRTN 14 74303069 74360008 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 9 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSIG1 23 108044970 108079184 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSIG10 12 118063593 118136026 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 13 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSIG10L 19 51331536 51342124 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 16 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSIG2 11 124747472 124752238 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSIG4 23 66021738 66040125 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 11 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSIG8 1 159854316 159862657 FALSE 33 -0.348314131628814 44 158619287 160093347 0.213873728132233 2 0 0.213873728132233 2 0 1474060 2 30 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSIR 10 71747559 71773498 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSNL1 2 17539126 17657018 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSTM1 19 54040825 54063953 FALSE 676 0.0540757208211633 82 53795835 54219944 0.298111653356898 4 NA 0.298111653356898 4 NA 424109 NA 19 8 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSTM2A 7 54542325 54571080 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSTM2B 19 29526499 29564479 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSTM2L 20 37903104 37945350 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSTM4 10 49014245 49115509 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 10 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSTM5 11 93818232 93850531 FALSE 361 -0.00626340354088552 73 92801890 101029628 0.249162995977636 4 2 0.249162995977636 4 2 8227738 2 37 4 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSX1 20 25070885 25082365 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 9 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VSX2 14 74239472 74262738 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 8 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VTA1 6 142147162 142224689 FALSE 220 0.0543375783167098 82 138298662 142443515 0.298111653356898 4 NA 0.298111653356898 4 NA 4144853 NA 16 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VTCN1 1 117143587 117210960 FALSE 26 -0.0550133500557354 68 112674990 117624255 0.39968910724052 3 1 0.39968910724052 3 1 4949265 2 44 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VTI1A 10 112446998 112818744 FALSE 336 0.281281646454176 97 110567687 113628982 0.39968910724052 4 NA 0.39968910724052 4 NA 3061295 NA 14 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VTI1B 14 67647075 67674831 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 8 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VTN 17 28367276 28373091 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VWA1 1 1434861 1442882 FALSE 2 0.188696460525447 90 1052057 1452346 0.275334878251284 5 NA 0.275334878251284 5 NA 400289 NA 25 7 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VWA2 10 114239330 114291513 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VWA3A 16 22092538 22156966 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VWA3B 2 98087116 98313299 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 27 3 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VWA5A 11 124115362 124147721 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VWA5B1 1 20290919 20354894 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 25 6 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VWA5B2 3 184230429 184242329 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 21 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VWA7 6 31765590 31777294 FALSE 192 0.00493836391948355 77 31761776 31933922 0.252310779181821 4 NA 0.252310779181821 4 NA 172146 NA 16 19 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VWA8 13 41566837 41961120 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 45 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VWC2 7 49773661 49921950 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VWC2L 2 214411065 214578959 FALSE 100 0.137874771111175 84 206755392 214729020 0.243587385410565 5 2 0.243587385410565 5 2 7973628 3 30 4 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VWCE 11 61258286 61295424 FALSE 351 -0.00270858795298945 77 61249834 61434618 0.252310779181821 4 NA 0.252310779181821 4 NA 184784 NA 10 22 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VWDE 7 12330885 12403941 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 37 12 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VWF 12 5948874 6124770 FALSE 379 -0.0303126799173677 68 4489844 6566854 0.39968910724052 3 1 0.39968910724052 3 1 2077010 2 28 60 5 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 VXN 8 66493208 66518524 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WAC 10 28532493 28623112 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WAPL 10 86435256 86521815 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 24 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WARS 14 100333788 100376805 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WARS2 1 119031216 119140671 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WAS 23 48676596 48691427 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 12 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WASF1 6 110099819 110180004 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WASF2 1 27404226 27490158 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WASF3 13 26557703 26688948 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WASHC1 9 14521 73865 FALSE 279 -0.548195418860268 34 14889 214478 0.312402751065481 1 0 0.312402751065481 1 0 199589 1 4 7 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WASHC2A 10 50067888 50133506 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 24 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WASHC2C 10 45727200 45792961 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 28 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WASHC3 12 102012927 102062149 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WASHC4 12 105107324 105169134 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 33 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WASHC5 8 125024260 125091840 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 28 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WASL 7 123681935 123749067 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WBP1 2 74458329 74460891 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WBP11 12 14784579 14803540 FALSE 389 0.00553812729738645 74 12727474 18242949 0.246063395031215 4 2 0.246063395031215 4 2 5515475 2 31 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WBP1L 10 102743901 102834516 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WBP2 17 75845699 75856507 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 8 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WBP2NL 22 41998725 42058456 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WBP4 13 41061274 41084006 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDCP 2 24029340 24049575 FALSE 54 -0.0456910083748844 72 21041028 25161736 0.211382613745547 4 NA 0.211382613745547 4 NA 4120708 NA 22 9 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDFY1 2 223855716 223945387 FALSE 103 0.153439494900873 86 223878656 225408986 0.360033220093454 4 NA 0.360033220093454 4 NA 1530330 NA 8 12 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDFY2 13 51584455 51767707 FALSE 435 -0.144032578797024 62 48512111 72755338 0.235629703240478 3 NA 0.235629703240478 3 NA 24243227 NA 58 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDFY3 4 84669610 84966391 FALSE 148 -0.052911147299413 69 73061852 87135677 0.39968910724052 3 1 0.39968910724052 3 1 14073825 2 87 72 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDFY4 10 48684876 48982956 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 73 8 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDHD1 14 54938950 55027105 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 27 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDPCP 2 63121383 63827843 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 32 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR1 4 10074339 10116949 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 16 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR11 10 120851175 120909524 FALSE 337 -0.0908426063106568 64 113629597 120904757 0.313405470508204 3 1 0.313405470508204 3 1 7275160 2 46 29 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR12 2 202874782 203014798 FALSE 97 0.0929905243123966 78 200490212 206062809 0.39968910724052 3 1 0.39968910724052 3 1 5572597 2 40 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR13 23 48590042 48608867 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 12 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR17 4 176065834 176182818 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 30 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR18 19 984271 998438 FALSE 586 -0.362459117532357 40 110773 1042302 0.199360539125166 2 0 0.199360539125166 2 0 931529 2 35 11 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR19 4 39182404 39285810 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 36 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR20 14 102139503 102224847 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR24 16 684622 690444 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR25 14 100376418 100530303 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR26 1 224385143 224437033 FALSE 40 0.052779167736156 78 207584642 227005125 0.39968910724052 3 1 0.39968910724052 3 1 19420483 2 104 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR27 6 169457212 169702067 FALSE 230 -0.0331467567986683 71 168062029 170285618 0.212208033369562 4 0 0.212208033369562 4 0 2223589 4 11 25 3 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR3 1 117929720 117966542 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 27 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR31 9 113313222 113340298 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR33 2 127701022 127811187 FALSE 81 0.127145969985058 84 113193908 127717199 0.243587385410565 5 2 0.243587385410565 5 2 14523291 3 45 33 1 TRUE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR34 9 128633661 128656787 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR35 2 19910260 19990131 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 30 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR36 5 111091716 111130502 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 24 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR37 10 1049538 1132384 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR38 9 124853417 124857890 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR4 21 42843094 42879568 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 12 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR41 5 77425970 77620611 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 14 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR43 2 28894643 28948222 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR44 23 118346073 118449961 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 22 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR45 23 49071470 49101170 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 13 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR45B 17 82614562 82648553 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR46 6 33279108 33289527 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 16 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR47 1 108970214 109042113 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR48 3 39051998 39096671 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 20 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR49 3 167478684 167653983 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR5 9 134135365 134159968 FALSE 306 -0.140346870455269 62 133636322 134157948 0.235629703240478 3 NA 0.235629703240478 3 NA 521626 NA 6 13 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR53 3 196554177 196568674 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR54 2 74421678 74425755 FALSE 68 -0.193479612688103 57 74135598 74536494 0.158317833115363 3 NA 0.158317833115363 3 NA 400896 NA 24 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR55 5 140664676 140674124 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR59 16 74871367 75000173 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 29 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR5B 3 122412332 122416051 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR6 3 49007062 49015953 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 17 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR60 7 158856578 158956747 FALSE 257 0.0628459934565962 82 157576685 159144789 0.298111653356898 4 NA 0.298111653356898 4 NA 1568104 NA 5 28 6 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR61 15 78277835 78299794 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 12 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR62 19 36054881 36105106 FALSE 643 -0.194040374275308 57 35738843 36141081 0.158317833115363 3 NA 0.158317833115363 3 NA 402238 NA 28 35 5 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR63 1 84999147 85133138 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 35 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR64 1 241652278 241802133 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 27 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR66 12 121917862 122003927 FALSE 423 -0.315985647593647 46 121839804 122003686 NA 2 NA NA 2 NA 163882 NA 4 26 5 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR7 18 56651343 57036606 FALSE 580 0.0213797303318786 75 48761665 58343006 0.39968910724052 3 1 0.39968910724052 3 1 9581341 2 39 30 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR70 5 37379212 37753435 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR72 15 53513741 53762878 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 23 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR73 15 84639281 84654343 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 9 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR74 11 62832342 62841809 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR75 2 189441433 189475565 FALSE 96 0.123596453753062 84 189004073 200478010 0.243587385410565 5 2 0.243587385410565 5 2 11473937 3 48 22 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR76 15 43826963 43868419 FALSE 483 -0.461231856022863 39 43521857 44564659 NA 2 NA NA 2 NA 1042802 NA 20 16 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR77 1 111439890 111449376 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR78 1 66812885 66924887 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR81 17 1716523 1738599 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 27 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR82 3 52254421 52288020 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR83 19 12666800 12675832 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 12 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR83OS 19 12668071 12669489 FALSE 619 -0.283713220466496 51 12629187 12874762 NA 2 NA NA 2 NA 245575 NA 22 4 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR86 7 151375909 151410727 FALSE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 13 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR87 19 37884823 37906677 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 35 7 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR88 19 33132090 33175795 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR89 14 63597039 63641861 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 5 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR90 16 649311 667833 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 41 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR91 7 135183839 135211534 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 16 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR92 2 68122936 68157560 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR93 15 89690797 89743638 FALSE 499 -0.326925020976481 44 88857449 89702022 0.213873728132233 2 0 0.213873728132233 2 0 844573 2 13 18 5 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDR97 8 144107726 144118315 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 28 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDSUB1 2 159235793 159286799 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDTC1 1 27234516 27308633 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WDYHV1 8 123416725 123470028 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 7 5 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WEE1 11 9573681 9593457 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WEE2 7 141708353 141731271 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 13 2 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFDC1 16 84294646 84329851 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFDC10A 20 45629526 45631196 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 2 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFDC10B 20 45684653 45705019 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFDC11 20 45648563 45670270 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFDC12 20 45123425 45124465 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFDC13 20 45702016 45708817 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFDC2 20 45469706 45481532 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFDC3 20 45747944 45791932 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFDC5 20 45109452 45115172 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFDC6 20 45534196 45539495 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFDC8 20 45551153 45579326 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFDC9 20 45607939 45631268 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFIKKN1 16 629239 634116 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 7 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFIKKN2 17 50834650 50842348 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 8 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WFS1 4 6269849 6303265 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 15 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WHAMM 15 82809628 82836108 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 15 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WHRN 9 114402080 114505450 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 19 4 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WIF1 12 65050626 65121566 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WIPF1 2 174559572 174682916 FALSE 87 0.0684699878954453 80 169614696 177216602 0.224978670039217 5 2 0.224978670039217 5 2 7601906 3 52 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WIPF2 17 40219304 40284136 FALSE 552 0.305189066960732 98 40256472 41046888 0.357144474819126 5 2 0.357144474819126 5 2 790416 3 31 10 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WIPF3 7 29806486 29917066 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 11 1 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WIPI1 17 68420948 68457513 FALSE 567 -0.15639394283828 60 62676571 72126326 0.390152951022651 3 1 0.390152951022651 3 1 9449755 2 69 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WIPI2 7 5190188 5233826 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WISP1 8 133191039 133231690 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WISP2 20 44714844 44728509 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WISP3 6 112054072 112070969 FALSE 208 0.0980733548088805 80 110442618 113860280 0.224978670039217 5 2 0.224978670039217 5 2 3417662 3 17 12 4 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WIZ 19 15419980 15449951 FALSE 626 0.131420245867563 86 15354999 15728497 0.360033220093454 4 NA 0.360033220093454 4 NA 373498 NA 10 17 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WLS 1 68098473 68233120 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNK1 12 752593 911452 FALSE 375 0.00440437382068143 77 66864 894588 0.252310779181821 4 NA 0.252310779181821 4 NA 827724 NA 8 48 3 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNK2 9 93184916 93320572 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 48 5 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNK3 23 54192823 54358642 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 33 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNK4 17 42780678 42796936 FALSE 557 0.00440903820986094 74 42317128 43179443 0.246063395031215 4 2 0.246063395031215 4 2 862315 2 35 24 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT1 12 48978453 48981676 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT10A 2 218880363 218899581 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT10B 12 48965340 48971763 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT11 11 76186325 76210736 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT16 7 121325367 121341104 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT2 7 117275451 117323289 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT2B 1 112466541 112530165 FALSE 25 -0.151477939046727 58 102989466 112669956 0.229991145683771 3 1 0.229991145683771 3 1 9680490 2 84 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT3 17 46762506 46833154 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT3A 1 228007051 228061260 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT4 1 22117305 22143969 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT5A 3 55465715 55490539 FALSE 119 -0.0120504345754912 75 52545492 74369329 0.39968910724052 3 1 0.39968910724052 3 1 21823837 2 93 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT5B 12 1529891 1647243 FALSE 377 -0.137657256980547 58 1028275 3873202 0.229991145683771 3 1 0.229991145683771 3 1 2844927 2 20 12 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT6 2 218859821 218874233 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT7A 3 13816258 13880121 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 7 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT7B 22 45920362 45977129 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT8A 5 138083892 138092365 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT8B 10 100463041 100483744 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT9A 1 227918656 227947898 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WNT9B 17 46833201 46886730 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 7 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WRAP53 17 7686071 7703502 FALSE 541 0.852618407541812 113 7655708 7687396 0.397448435712946 8 NA 0.397448435712946 8 NA 31688 NA 3 17 0 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WRAP73 1 3630767 3652761 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WRB 21 39377698 39428528 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WRB-SH3BGR 21 39380332 39515506 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WRN 8 31033801 31173769 FALSE 263 -0.733220050878338 27 30753052 31640612 0.255173832388045 0 0 0.255173832388045 0 0 887560 0 6 42 1 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WRNIP1 6 2765414 2786952 FALSE 185 -0.147294946476987 59 489058 26372851 0.22538042745788 3 0 0.22538042745788 3 0 25883793 3 153 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WSB1 17 27294076 27315926 FALSE 547 -0.0569503607432691 68 21007947 30957860 0.39968910724052 3 1 0.39968910724052 3 1 9949913 2 74 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WSB2 12 118032694 118062430 FALSE 422 0.215986368548516 91 112164110 121830271 0.39968910724052 4 2 0.39968910724052 4 2 9666161 2 80 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WSCD1 17 6057807 6124427 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WSCD2 12 108129471 108250537 FALSE 419 0.146363856682882 84 92421191 111363450 0.243587385410565 5 2 0.243587385410565 5 2 18942259 3 132 10 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WT1 11 32387775 32435630 TRUE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 28 10 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WTAP 6 159725585 159756319 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WTIP 19 34481638 34512304 FALSE 639 -0.405297231811747 39 34430686 34943334 NA 2 NA NA 2 NA 512648 NA 7 10 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WWC1 5 168291651 168472303 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 27 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WWC2 4 183099293 183320777 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 30 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WWC3 23 10015562 10144478 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 26 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WWOX 16 78099413 79212667 FALSE 530 0.0863261484312413 82 76522085 80684905 0.298111653356898 4 NA 0.298111653356898 4 NA 4162820 NA 12 11 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WWP1 8 86342738 86478420 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 28 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WWP2 16 69762306 69941741 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 23 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 WWTR1 3 149517235 149736714 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XAB2 19 7619525 7629565 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 19 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XAF1 17 6755447 6775647 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XAGE2 23 52369030 52375680 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 1 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XAGE3 23 52862525 52868068 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XAGE5 23 52812204 52818301 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 4 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XBP1 22 28794555 28800597 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XCL1 1 168576473 168582077 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XCL2 1 168540765 168543997 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 3 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XCR1 3 46017024 46027742 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XDH 2 31334321 31414715 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 39 6 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XG 23 2752048 2816500 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XIAP 23 123859724 123913979 FALSE 720 0.272623247386123 97 123712866 124123962 0.39968910724052 2 NA 0.39968910724052 2 NA 411096 NA 3 30 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XIRP1 3 39183210 39192596 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 22 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XIRP2 2 166888487 167259753 FALSE 86 -0.189701307314598 54 164494559 169614425 0.159525970813345 3 0 0.159525970813345 3 0 5119866 3 26 54 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XK 23 37685756 37732130 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XKR3 22 16783412 16821699 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 7 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XKR4 8 55102389 55542054 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XKR5 8 6808517 6835644 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XKR6 8 10896045 11201366 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XKR7 20 31968002 32003387 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XKR8 1 27959462 27968096 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XKR9 8 70669365 70790371 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XKRX 23 100913445 100929433 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XPA 9 97674909 97697357 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XPC 3 14145147 14178783 FALSE 113 -0.17267646183732 59 12392657 14402583 0.22538042745788 3 0 0.22538042745788 3 0 2009926 3 19 21 5 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XPNPEP1 10 109864766 109923553 FALSE 335 -0.146822134427476 58 102676959 110562788 0.229991145683771 3 1 0.229991145683771 3 1 7885829 2 36 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XPNPEP2 23 129738974 129769538 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 21 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XPNPEP3 22 40857077 40932815 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XPO1 2 61477849 61538626 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 42 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XPO4 13 20777329 20903048 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XPO5 6 43522330 43576075 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 32 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XPO6 16 28097979 28211920 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 25 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XPO7 8 21919671 22006585 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 29 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XPOT 12 64404350 64451127 FALSE 411 0.100824843727294 79 57138487 68764752 0.310979917909445 4 2 0.310979917909445 4 2 11626265 2 71 28 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XPR1 1 180632004 180890251 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XRCC1 19 43543040 43580473 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 20 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XRCC2 7 152644779 152676165 TRUE 256 -0.00248985780666267 73 151341801 157571534 0.249162995977636 4 2 0.249162995977636 4 2 6229733 2 25 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XRCC3 14 103697609 103715504 FALSE 468 1.11920783945042 116 103679530 103715866 0.397448435712946 11 NA 0.397448435712946 11 NA 36336 NA 4 20 4 FALSE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XRCC4 5 83077498 83353787 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 8 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XRCC5 2 216107464 216206303 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XRCC6 22 41621119 41664048 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XRN1 3 142306607 142448062 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 44 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XRN2 20 21303304 21389827 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 30 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XRRA1 11 74807739 74949200 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 26 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XXYLT1 3 195068279 195271167 FALSE 138 0.220396280658261 92 189957958 195726386 0.39968910724052 4 2 0.39968910724052 4 2 5768428 2 29 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XYLB 3 38346760 38421348 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 21 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XYLT1 16 17101769 17470881 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 18 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 XYLT2 17 50346092 50363138 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 18 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YAE1 7 39566376 39610320 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 6 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YAF2 12 42157104 42238349 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YAP1 11 102110461 102233423 FALSE 364 0.700986600265991 111 102083149 102336201 0.397448435712946 7 NA 0.397448435712946 7 NA 253052 NA 3 26 2 FALSE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YARS 1 32775237 32818153 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YARS2 12 32727490 32755902 FALSE 396 0.223282621637352 91 27647867 39301643 0.39968910724052 4 2 0.39968910724052 4 2 11653776 2 31 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YBEY 21 46286337 46297751 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YBX1 1 42682427 42702349 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YBX2 17 7288252 7294615 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 10 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YBX3 12 10699089 10723312 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YDJC 22 21628089 21630064 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YEATS2 3 183697818 183812625 FALSE 134 0.0617667955302599 79 183650496 186047428 0.310979917909445 4 2 0.310979917909445 4 2 2396932 2 38 32 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YEATS4 12 69359703 69390796 FALSE 413 -0.0193215587818043 77 68856685 69390241 0.252310779181821 4 NA 0.252310779181821 4 NA 533556 NA 4 7 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YES1 18 721588 812546 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YIF1A 11 66284580 66289170 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YIF1B 19 38305104 38317273 FALSE 645 -0.253526742349943 51 38081739 38711272 NA 2 NA NA 2 NA 629533 NA 18 9 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YIPF1 1 53851719 53889834 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YIPF2 19 10922185 10928681 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YIPF3 6 43511827 43516990 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YIPF4 2 32277910 32316594 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YIPF5 5 144158159 144170714 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YIPF6 23 68498323 68537285 FALSE 713 -0.733094169400323 27 67721070 71113596 0.255173832388045 0 NA 0.255173832388045 0 0 3392526 0 27 7 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YIPF7 4 44622065 44678556 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YJEFN3 19 19528861 19537581 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YJU2 19 4247079 4269090 FALSE 600 -0.234869927794019 51 4175145 4306008 NA 2 NA NA 2 NA 130863 NA 7 8 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YKT6 7 44200968 44214294 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YLPM1 14 74763366 74859435 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 39 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YME1L1 10 27110112 27155266 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YOD1 1 207043849 207052980 FALSE 39 -0.126177318869813 67 206934439 207582013 0.31995059840763 3 NA 0.31995059840763 3 NA 647574 NA 10 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YPEL1 22 21697544 21735834 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YPEL2 17 59331689 59401729 FALSE 565 -0.379013737794805 40 51171473 59890867 0.199360539125166 2 0 0.199360539125166 2 0 8719394 2 60 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YPEL3 16 30092314 30096915 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YPEL4 11 57645087 57649944 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YPEL5 2 30146941 30160533 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 2 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YRDC 1 37802944 37808185 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YTHDC1 4 68310387 68350089 FALSE 147 -0.0985562541878041 64 65323385 73058273 0.313405470508204 3 1 0.313405470508204 3 1 7734888 2 52 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YTHDC2 5 113513683 113595285 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 30 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YTHDF1 20 63195429 63216234 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YTHDF2 1 28736621 28769775 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YTHDF3 8 63168553 63212786 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YWHAB 20 44885676 44908532 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YWHAE 17 1344272 1400378 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 24 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YWHAG 7 76326794 76359031 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YWHAH 22 31944461 31957603 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YWHAQ 2 9583972 9631014 FALSE 52 0.0932361667373968 80 6840640 20671357 0.224978670039217 5 2 0.224978670039217 5 2 13830717 3 56 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YWHAZ 8 100916525 100953388 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YY1 14 100238298 100282792 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YY1AP1 1 155659443 155689000 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 16 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 YY2 23 21855987 21858727 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 Z82190.2 22 31754899 31956243 FALSE 702 -0.118433512720585 64 30019937 37374115 0.313405470508204 3 1 0.313405470508204 3 1 7354178 2 84 50 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 Z83844.1 22 37686414 37726503 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 23 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 Z83844.3 22 37639693 37666932 FALSE 703 0.046373418364998 78 37374590 37987420 0.39968910724052 3 1 0.39968910724052 3 1 612830 2 22 25 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 Z84488.2 6 116399395 116463696 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 18 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 Z84492.1 3 50350892 50367923 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 22 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 Z98752.3 20 43540171 43569498 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZACN 17 76071961 76083666 FALSE 568 -0.244444525474622 47 72127025 78570931 0.205658471801404 2 0 0.205658471801404 2 0 6443906 2 111 15 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZADH2 18 75195108 75209348 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZAN 7 100733626 100797797 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 53 10 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZAP70 2 97713560 97739862 FALSE 77 0.112211756564516 84 97713653 106145263 0.243587385410565 5 2 0.243587385410565 5 2 8431610 3 53 18 2 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZAR1 4 48490252 48494389 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 7 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZAR1L 13 32303700 32315344 FALSE 432 -0.018436515926473 73 32234680 42194925 0.249162995977636 4 2 0.249162995977636 4 2 9960245 2 45 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBBX 3 167240287 167381346 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 21 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBED2 3 111592900 111595443 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 3 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBED3 5 77072072 77087323 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 3 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBED4 22 49853842 49890078 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBED5 11 10812074 10858796 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBED6 1 203795714 203854999 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 30 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBED6CL 7 150329789 150332721 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 3 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBED8 5 160393148 160400097 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBED9 6 28570535 28616212 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBP1 20 57603846 57620576 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB1 14 64503712 64533690 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 10 2 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB10 8 80485619 80526265 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 14 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB11 3 101648889 101677495 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB12 6 31899607 31901992 FALSE 192 0.00493836391948355 77 31761776 31933922 0.252310779181821 4 NA 0.252310779181821 4 NA 172146 NA 16 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB14 18 5289019 5297053 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB16 11 114059593 114250676 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB17 1 15941869 15976132 FALSE 15 0.276479146253238 96 15940242 16759119 0.39968910724052 4 1 0.39968910724052 4 1 818877 3 16 17 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB18 1 244048939 244057476 FALSE 44 0.117466813329847 86 243659450 245702541 0.360033220093454 4 NA 0.360033220093454 4 NA 2043091 NA 11 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB2 6 151364117 151391548 FALSE 223 0.236892508535766 96 150395481 152208217 0.39968910724052 4 1 0.39968910724052 4 1 1812736 3 10 13 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB20 3 114314501 115147271 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB21 21 41986831 42010387 FALSE 695 -0.147165035056481 58 14144780 46664411 0.229991145683771 3 1 0.229991145683771 3 1 32519631 2 214 13 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB22 6 33314406 33317942 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 8 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB24 6 109462594 109483237 FALSE 207 -0.136174873363586 62 106202033 110442411 0.235629703240478 3 NA 0.235629703240478 3 NA 4240378 NA 32 12 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB25 14 64449106 64505213 FALSE 453 0.0765144995838428 81 45204210 65046836 0.374441289901121 4 1 0.374441289901121 4 1 19842626 3 117 16 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB26 9 122915566 122931500 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB3 11 62748319 62754188 FALSE 352 -0.21946532292099 52 61436491 64803187 0.261858812358373 3 1 0.261858812358373 3 1 3366696 2 104 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB32 19 35704527 35717038 FALSE 641 -0.422487639157811 36 35140099 35716658 0.315774863180649 1 0 0.315774863180649 1 0 576559 1 27 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB33 23 120250752 120258398 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB34 9 126860665 126885878 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB37 1 173868082 173903549 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB38 3 141324213 141449792 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 14 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB39 12 56998834 57006446 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB4 17 7459366 7484263 FALSE 539 -0.311266907003776 44 5530537 7557209 0.213873728132233 2 0 0.213873728132233 2 0 2026672 2 59 19 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB40 1 22428838 22531157 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 22 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB41 1 197153680 197200542 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB42 14 104800596 104804712 FALSE 471 0.787803514486211 112 104769452 104801597 0.397448435712946 8 NA 0.397448435712946 8 NA 32145 NA 2 5 2 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB43 9 126805006 126838210 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB44 11 130226677 130314908 FALSE 374 -0.170800810782652 58 128813151 134387620 0.229991145683771 3 1 0.229991145683771 3 1 5574469 2 28 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB45 19 58513530 58538911 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB46 20 63743666 63831244 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB47 3 42653684 42665854 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB48 1 6580001 6589280 FALSE 5 0.162829608597436 88 1968793 7984995 0.3914153250654 4 2 0.3914153250654 4 2 6016202 2 56 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB49 4 4290251 4321786 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB5 9 37438114 37465399 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 8 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB6 9 122908056 122913330 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB7A 19 4044364 4066945 FALSE 599 0.276554850290338 97 3959289 4175087 0.39968910724052 4 NA 0.39968910724052 4 NA 215798 NA 7 23 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB7B 1 155002630 155018522 FALSE 31 -0.0980545569292565 65 152410866 158181507 0.381557495702965 3 1 0.381557495702965 3 1 5770641 2 178 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB7C 18 48026673 48410752 FALSE 578 0.483187621078781 104 47898426 48040919 0.397448435712946 6 NA 0.397448435712946 6 NA 142493 NA 2 11 0 TRUE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB8A 1 32539427 32605939 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB8B 1 32465069 32496686 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB8OS 1 32600172 32650903 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZBTB9 6 33453970 33457548 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 6 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC2HC1A 8 78666047 78719765 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC2HC1B 6 143864436 143938356 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 7 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC2HC1C 14 75064170 75079987 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 8 1 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H10 12 56118159 56127514 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H11A 1 203795654 203854999 FALSE 38 -0.0125062067107186 73 202742431 206933099 0.249162995977636 4 2 0.249162995977636 4 2 4190668 2 66 30 3 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H12A 1 37474552 37484379 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H12B 23 65366638 65507887 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 13 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H12C 11 110093361 110171841 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H12D 6 149446795 149485061 FALSE 222 -0.0805680602146673 66 143060973 150394210 0.330876988437597 3 0 0.330876988437597 3 0 7333237 3 42 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H13 13 45954465 46052759 FALSE 433 -0.164570947633422 58 42198475 48258929 0.229991145683771 3 1 0.229991145683771 3 1 6060454 2 35 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H14 14 88562909 88627596 FALSE 462 0.0199887291161933 76 88550362 94448733 0.39968910724052 3 1 0.39968910724052 3 1 5898371 2 52 30 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H15 2 186486156 186509363 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H18 16 88570381 88631966 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 22 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H3 8 143437655 143541453 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 18 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H4 19 47064187 47113752 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 23 1 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H6 2 112275594 112340063 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H7A 16 11750586 11797267 FALSE 517 -0.0362540617203195 72 11676092 11941161 0.211382613745547 4 NA 0.211382613745547 4 NA 265069 NA 6 24 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H7B 22 41301522 41360147 FALSE 704 -0.104055927598645 64 38041105 50782272 0.313405470508204 3 1 0.313405470508204 3 1 12741167 2 173 28 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3H8 2 112211525 112255136 FALSE 80 0.035966633400545 73 111142431 113193662 0.249162995977636 4 2 0.249162995977636 4 2 2051231 2 24 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3HAV1 7 139043520 139109719 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 19 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3HAV1L 7 139025706 139036029 FALSE 252 0.0239173865419841 73 131511418 141729715 0.249162995977636 4 2 0.249162995977636 4 2 10218297 2 58 7 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC3HC1 7 130018286 130051451 FALSE 250 0.0304726704826586 77 128879562 131142979 0.252310779181821 4 NA 0.252310779181821 4 NA 2263417 NA 25 12 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZC4H2 23 64915802 65034713 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 5 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCCHC10 5 132996985 133026604 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCCHC12 23 118823790 118826968 FALSE 719 -0.378508393274065 43 111246804 123706960 1 1 0 1 1 0 12460156 1 67 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCCHC13 23 74304190 74305031 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 3 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCCHC14 16 87406246 87492045 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 19 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCCHC17 1 31296982 31364953 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCCHC18 23 104112131 104115846 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCCHC2 18 62523007 62587709 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 22 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCCHC24 10 79382325 79445627 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCCHC3 20 296968 300321 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCCHC4 4 25312785 25370383 FALSE 144 -0.0680805341131442 64 16186592 48564977 0.313405470508204 3 1 0.313405470508204 3 1 32378385 2 93 14 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCCHC7 9 37120539 37358149 FALSE 289 -0.158610472006749 59 37126526 39149961 0.22538042745788 3 0 0.22538042745788 3 0 2023435 3 20 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCCHC8 12 122471600 122501073 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCCHC9 5 81301590 81313297 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCRB1 12 42312078 42326118 FALSE 397 -0.011000201812926 73 39303134 45817613 0.249162995977636 4 2 0.249162995977636 4 2 6514479 2 22 7 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCWPW1 7 100400826 100428992 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 18 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZCWPW2 3 28349146 28538122 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDBF2 2 206274663 206314438 FALSE 98 -0.534538327599125 34 206124310 206587285 0.312402751065481 1 0 0.312402751065481 1 0 462975 1 5 30 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC1 16 67394152 67416833 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC11 5 795606 850986 FALSE 160 0.207920496709617 94 224566 833800 0.39968910724052 4 NA 0.39968910724052 4 NA 609234 NA 9 12 5 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC11B 5 710360 766952 FALSE 160 0.207920496709617 94 224566 833800 0.39968910724052 4 NA 0.39968910724052 4 NA 609234 NA 9 11 3 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC12 9 128720869 128724127 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC13 11 19117099 19176422 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC14 6 157381133 157678146 FALSE 226 -0.00184095205523024 76 157215897 160752985 0.39968910724052 3 1 0.39968910724052 3 1 3537088 2 27 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC15 23 75368427 75523502 FALSE 716 0.343787689955659 101 71911321 77786243 0.397448435712946 2 NA 0.397448435712946 2 NA 5874922 NA 32 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC16 10 97446131 97457370 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC17 12 76763588 76853696 FALSE 417 0.204172883802386 91 71611081 91164652 0.39968910724052 4 2 0.39968910724052 4 2 19553571 2 58 17 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC18 1 26826710 26857602 FALSE 20 -1.06423626452679 19 26697078 26826772 0.39968910724052 0 0 0.39968910724052 0 0 129694 0 3 9 0 TRUE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC19 3 196197449 196211437 FALSE 139 0.240081072832351 95 195726563 197848020 0.39968910724052 4 2 0.39968910724052 4 2 2121457 2 30 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC2 8 17156029 17224799 FALSE 260 -0.334064426379982 45 12194047 23200770 1 2 1 1 2 1 11006723 1 64 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC20 13 21372573 21459370 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 13 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC21 9 14611071 14693471 FALSE 283 -0.119101988650472 65 5720335 19786838 0.381557495702965 3 1 0.381557495702965 3 1 14066503 2 36 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC22 14 77131270 77142734 FALSE 459 0.0773665419613095 81 75053657 81145262 0.374441289901121 4 1 0.374441289901121 4 1 6091605 3 41 4 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC23 3 113947901 113965401 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC24 11 66520637 66546238 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 17 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC3 3 44915257 44976185 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC4 7 6577434 6589374 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC5 11 57667747 57701187 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 14 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC6 10 112424428 112446917 FALSE 336 0.281281646454176 97 110567687 113628982 0.39968910724052 4 NA 0.39968910724052 4 NA 3061295 NA 14 15 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC7 16 84974181 85011535 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC8 22 20129456 20148007 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 16 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZDHHC9 23 129803288 129843909 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZEB1 10 31318495 31529814 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZEB2 2 144364364 144524583 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 19 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZER1 9 128729786 128772414 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 17 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFAND1 8 81701334 81732903 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 9 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFAND2A 7 1152071 1160759 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 4 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFAND2B 2 219195237 219209651 FALSE 102 -0.280392113152539 48 218640766 223837431 1 2 1 1 2 1 5196665 1 52 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFAND3 6 37819499 38154624 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFAND4 10 45615501 45672780 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 14 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFAND5 9 72351425 72365235 FALSE 291 -0.181789061713071 59 68387464 81688261 0.22538042745788 3 0 0.22538042745788 3 0 13300797 3 43 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFAND6 15 80059568 80138393 FALSE 493 -0.115562820590426 63 76203891 82045681 0.39968910724052 3 1 0.39968910724052 3 1 5841790 2 48 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFAT 8 134477788 134713049 FALSE 277 -0.0161094687318053 74 127746705 141477828 0.246063395031215 4 2 0.246063395031215 4 2 13731123 2 30 24 4 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFC3H1 12 71609472 71667725 FALSE 416 0.947289266108773 114 71439905 71610713 0.397448435712946 9 NA 0.397448435712946 9 NA 170808 NA 3 42 0 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFHX2 14 23520855 23556192 FALSE 448 -0.101960271608674 66 22634135 31386580 0.330876988437597 3 0 0.330876988437597 3 0 8752445 3 97 34 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFHX3 16 72782885 73891871 TRUE 527 0.848632818707421 113 72783077 73131070 0.397448435712946 8 NA 0.397448435712946 8 NA 347993 NA 1 81 2 TRUE INDETERMINATE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFHX4 8 76681219 76867285 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 46 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP1 16 75148492 75172236 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP14 19 36334453 36379199 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP2 5 178895894 178933212 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP28 19 56538948 56556810 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 15 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP3 17 5078248 5096374 FALSE 537 -0.704833888728741 29 5091667 5391656 0.39968910724052 1 0 0.39968910724052 1 0 299989 1 7 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP30 19 37613749 37692337 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP36 19 39406813 39409412 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP36L1 14 68787660 68796253 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 6 0 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP36L2 2 43222402 43226609 FALSE 58 0.0725364962728759 80 29181836 46480669 0.224978670039217 5 2 0.224978670039217 5 2 17298833 3 79 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP37 9 113038380 113056759 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 10 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP41 8 143246821 143262705 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP42 4 187995771 188005050 FALSE 158 -0.362826515702973 41 182753544 190026761 1 2 1 1 2 1 7273217 1 40 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP57 6 29672392 29681110 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP62 5 180847611 180861285 FALSE 183 -0.449406845966543 39 180792977 181260799 NA 2 NA NA 2 NA 467822 NA 11 11 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP64 20 52051663 52204308 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP69 1 40477215 40496343 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP69B 1 40450102 40463718 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP82 19 36383120 36418656 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP90 16 68530090 68576072 FALSE 524 0.01709011266886 73 68234053 70829690 0.249162995977636 4 2 0.249162995977636 4 2 2595637 2 45 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP91 11 58579111 58621042 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP91-CNTF 11 58579172 58624639 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 18 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFP92 23 153418322 153426481 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFPL1 11 65084210 65088400 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFPM1 16 88453317 88537016 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 18 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFPM2 8 104590733 105804532 FALSE 274 -0.276254726456932 51 103435783 105801444 NA 2 NA NA 2 NA 2365661 NA 7 17 5 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFR 5 32354350 32444761 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 25 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFR2 19 3804024 3869032 FALSE 598 -0.201030278929954 57 3651966 3942109 0.158317833115363 3 NA 0.158317833115363 3 NA 290143 NA 9 26 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFX 23 24149173 24216255 FALSE 707 -0.610771293199064 32 20161695 38687694 0.364170154096734 0 NA 0.364170154096734 0 0 18525999 0 61 13 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFYVE1 14 72969451 73027212 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 13 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFYVE16 5 80408013 80479350 FALSE 170 -0.274552530717068 48 79793605 84106818 1 2 1 1 2 1 4313213 1 23 27 8 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFYVE19 15 40807086 40815084 FALSE 479 -0.179094000289878 59 38464134 41565105 0.22538042745788 3 0 0.22538042745788 3 0 3100971 3 50 15 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFYVE21 14 103715730 103733668 FALSE 468 1.11920783945042 116 103679530 103715866 0.397448435712946 11 NA 0.397448435712946 11 NA 36336 NA 4 8 0 TRUE AMP PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFYVE26 14 67727374 67816590 FALSE 455 0.136812340726376 85 65107775 70048965 0.358205813304787 4 1 0.358205813304787 4 1 4941190 3 32 53 4 FALSE CNLOH AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFYVE27 10 97737121 97760907 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFYVE28 4 2269582 2418663 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 20 4 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZFYVE9 1 52142094 52346686 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 25 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZG16 16 29778240 29782973 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZG16B 16 2830169 2839585 FALSE 511 -0.16717718169217 58 2179705 2832047 0.229991145683771 3 1 0.229991145683771 3 1 652342 2 27 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZGLP1 19 10304803 10309880 FALSE 614 -0.0600194497824052 70 10252447 10929694 0.191163514035561 4 2 0.191163514035561 4 2 677247 2 28 5 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZGPAT 20 63707465 63736142 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZGRF1 4 112539333 112636995 FALSE 152 -0.189676435315195 55 105369657 122743912 0.179574639950532 3 0 0.179574639950532 3 0 17374255 3 71 41 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZHX1 8 123248451 123275541 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZHX1-C8orf76 8 123226189 123274284 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 18 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZHX2 8 122781394 122974512 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 10 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZHX3 20 41178448 41317672 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZIC1 3 147393422 147510293 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 12 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZIC2 13 99981772 99986773 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZIC3 23 137566142 137577691 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZIC4 3 147386046 147406860 FALSE 124 0.139950614348893 84 129563124 156544443 0.243587385410565 5 2 0.243587385410565 5 2 26981319 3 142 9 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZIC5 13 99962964 99971909 FALSE 437 -0.0466653810763178 68 72783613 101715195 0.39968910724052 3 1 0.39968910724052 3 1 28931582 2 58 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZIK1 19 57578456 57593777 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZIM2 19 56774547 56840729 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 30 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZIM3 19 57134096 57145202 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZKSCAN1 7 100015572 100041689 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZKSCAN2 16 25236001 25257931 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 15 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZKSCAN3 6 28349914 28369177 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZKSCAN4 6 28244623 28252224 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZKSCAN5 7 99504651 99534700 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZKSCAN7 3 44555193 44594173 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZKSCAN8 6 28141910 28159472 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMAT1 23 101882288 101932031 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMAT2 5 140698680 140706676 FALSE 175 -0.0533884218592098 69 135941261 140795134 0.39968910724052 3 1 0.39968910724052 3 1 4853873 2 65 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMAT3 3 179017223 179072279 FALSE 126 0.19927407790414 91 156829381 179027501 0.39968910724052 4 2 0.39968910724052 4 2 22198120 2 70 6 0 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMAT4 8 40530590 40897833 FALSE 268 -0.266658947890869 50 38429663 41896325 1 2 1 1 2 1 3466662 1 20 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMAT5 22 29730956 29767011 FALSE 701 0.13264142039285 86 28904866 30019587 0.360033220093454 4 NA 0.360033220093454 4 NA 1114721 NA 19 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMIZ1 10 79069035 79316528 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 27 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMIZ2 7 44748581 44769881 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 22 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMPSTE24 1 40258107 40294184 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMYM1 1 35032172 35115859 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMYM2 13 19958670 20091829 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 29 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMYM3 23 71239624 71255146 FALSE 714 -0.111342206574026 67 71118719 71290781 0.31995059840763 2 NA 0.31995059840763 2 NA 172062 NA 5 38 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMYM4 1 35268967 35422058 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 33 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMYM5 13 19823482 19863636 FALSE 429 -0.217287685664864 53 19173907 28015130 0.16513616132123 3 1 0.16513616132123 3 1 8841223 2 55 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMYM6 1 34986165 35031968 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 23 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMYND10 3 50341110 50346852 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMYND11 10 134465 254637 FALSE 312 0.0263843958308158 73 47144 7965286 0.249162995977636 4 2 0.249162995977636 4 2 7918142 2 40 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMYND12 1 42430329 42456267 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMYND15 17 4740015 4746119 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 15 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMYND19 9 137582079 137590490 FALSE 310 -0.191984445961488 56 136673791 138046921 0.216790121929951 3 0 0.216790121929951 3 0 1373130 3 64 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZMYND8 20 47209214 47356889 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 29 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF10 12 133130575 133159465 FALSE 428 -0.308400004626836 46 132869854 133234366 NA 2 NA NA 2 NA 364512 NA 10 9 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF100 19 21722766 21767628 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF101 19 19668796 19683509 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF106 15 42412823 42491141 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 36 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF107 7 64666083 64711582 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF112 19 44326555 44367217 FALSE 659 -0.801689271107813 24 44148801 44524243 0.39968910724052 1 0 0.39968910724052 1 0 375442 1 11 15 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF114 19 48270102 48287608 FALSE 666 0.0300699263869938 76 48211972 49016288 0.39968910724052 3 1 0.39968910724052 3 1 804316 2 39 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF117 7 64971776 65006684 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 13 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF12 7 6688433 6706923 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 11 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF121 19 9560353 9584533 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 6 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF124 1 247121975 247172016 FALSE 45 -0.259945689995748 51 245749557 247491500 NA 2 NA NA 2 NA 1741943 NA 13 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF131 5 43065176 43192021 FALSE 164 -0.013339216389284 75 39270645 43493645 0.39968910724052 3 1 0.39968910724052 3 1 4223000 2 25 11 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF132 19 58432814 58440222 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF133 20 18288283 18316996 FALSE 687 0.0742557109118458 80 10038445 23370390 0.224978670039217 5 2 0.224978670039217 5 2 13331945 3 57 13 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF134 19 57614233 57624723 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF135 19 58059239 58086310 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 15 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF136 19 12163064 12189881 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF138 7 64794388 64833681 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF14 19 19710471 19733097 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF140 12 133079838 133107544 FALSE 428 -0.308400004626836 46 132869854 133234366 NA 2 NA NA 2 NA 364512 NA 10 8 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF141 4 337814 384864 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF142 2 218637916 218659655 FALSE 101 -0.0440621414935119 69 214730345 218638730 0.39968910724052 3 1 0.39968910724052 3 1 3908385 2 31 21 2 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF143 11 9460319 9528524 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF146 19 36214602 36238774 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF148 3 125225561 125375354 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF154 19 57697367 57709194 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF155 19 43967862 43998325 FALSE 658 -0.851985286972629 23 43847684 44144686 0.307934776518021 0 0 0.307934776518021 0 0 297002 0 13 10 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF157 23 47370583 47414305 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 8 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF16 8 144930358 144950888 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 9 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF160 19 53066606 53103436 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF165 6 28080975 28089563 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF169 9 94259311 94301454 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF17 19 57411163 57421939 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF174 16 3401235 3409370 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF175 19 51571298 51592508 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 11 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF177 19 9363020 9382617 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 9 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF18 17 11977439 11997510 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF180 19 44474428 44500524 FALSE 659 -0.801689271107813 24 44148801 44524243 0.39968910724052 1 0 0.39968910724052 1 0 375442 1 11 11 4 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF181 19 34734155 34745378 FALSE 639 -0.405297231811747 39 34430686 34943334 NA 2 NA NA 2 NA 512648 NA 7 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF182 23 47974851 48003978 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 10 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF184 6 27450743 27473118 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 12 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF185 23 152914442 152973480 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 24 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF189 9 101398873 101410660 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF19 16 71464555 71565089 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 13 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF195 11 3339261 3379222 FALSE 342 -0.207416533720722 57 2777059 4091747 0.158317833115363 3 NA 0.158317833115363 3 NA 1314688 NA 18 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF197 3 44584888 44648471 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 21 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF2 2 95165432 95184317 FALSE 72 -0.297431743288301 44 95106429 96195026 0.213873728132233 2 0 0.213873728132233 2 0 1088597 2 15 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF20 19 12092843 12140407 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 16 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF200 16 3222325 3236221 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 6 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF202 11 123724177 123741675 FALSE 372 -0.198423947497139 52 122796959 126446922 0.261858812358373 3 1 0.261858812358373 3 1 3649963 2 71 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF205 16 3112560 3120517 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 10 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF207 17 32350117 32381886 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 12 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF208 19 21932958 22010949 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 6 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF211 19 57630395 57642779 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF212 7 149239651 149255609 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 9 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF213 16 3129777 3142805 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 8 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF214 11 6999318 7020368 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 9 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF215 11 6926404 7001004 FALSE 344 -0.242883245448482 48 6027426 9053257 1 2 1 1 2 1 3025831 1 59 14 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF217 20 53567065 53609907 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 24 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF219 14 21090046 21104722 FALSE 446 -0.0121799506494745 75 20300755 21536898 0.39968910724052 3 1 0.39968910724052 3 1 1236143 2 43 17 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF22 10 45000475 45005326 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 6 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF221 19 43951223 43967709 FALSE 658 -0.851985286972629 23 43847684 44144686 0.307934776518021 0 0 0.307934776518021 0 0 297002 0 13 10 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF222 19 44025342 44033112 FALSE 658 -0.851985286972629 23 43847684 44144686 0.307934776518021 0 0 0.307934776518021 0 0 297002 0 13 9 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF223 19 44051367 44067991 FALSE 658 -0.851985286972629 23 43847684 44144686 0.307934776518021 0 0 0.307934776518021 0 0 297002 0 13 9 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF224 19 44094339 44109886 FALSE 658 -0.851985286972629 23 43847684 44144686 0.307934776518021 0 0 0.307934776518021 0 0 297002 0 13 11 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF225 19 44112181 44134816 FALSE 658 -0.851985286972629 23 43847684 44144686 0.307934776518021 0 0 0.307934776518021 0 0 297002 0 13 11 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF226 19 44165073 44178381 FALSE 659 -0.801689271107813 24 44148801 44524243 0.39968910724052 1 0 0.39968910724052 1 0 375442 1 11 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF227 19 44207547 44237268 FALSE 659 -0.801689271107813 24 44148801 44524243 0.39968910724052 1 0 0.39968910724052 1 0 375442 1 11 11 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF229 19 44417519 44448578 FALSE 659 -0.801689271107813 24 44148801 44524243 0.39968910724052 1 0 0.39968910724052 1 0 375442 1 11 12 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF23 16 71447597 71463095 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 9 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF230 19 44002948 44013926 FALSE 658 -0.851985286972629 23 43847684 44144686 0.307934776518021 0 0 0.307934776518021 0 0 297002 0 13 8 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF232 17 5105541 5123116 FALSE 537 -0.704833888728741 29 5091667 5391656 0.39968910724052 1 0 0.39968910724052 1 0 299989 1 7 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF233 19 44259880 44275317 FALSE 659 -0.801689271107813 24 44148801 44524243 0.39968910724052 1 0 0.39968910724052 1 0 375442 1 11 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF234 19 44141557 44160309 FALSE 658 -0.851985286972629 23 43847684 44144686 0.307934776518021 0 0 0.307934776518021 0 0 297002 0 13 10 2 TRUE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF235 19 44228729 44305046 FALSE 659 -0.801689271107813 24 44148801 44524243 0.39968910724052 1 0 0.39968910724052 1 0 375442 1 11 32 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF236 18 76822607 76970727 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 36 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF239 10 43556344 43574618 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 9 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF24 18 35332212 35345482 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 7 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF248 10 37776526 37858106 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 12 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF25 10 37949572 37976633 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF250 8 144876497 144902168 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF251 8 144720907 144756417 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF253 19 19865886 19894674 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF254 19 24033405 24129961 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF256 19 57940833 57947675 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF257 19 22052452 22091480 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF26 12 132986365 133032952 FALSE 428 -0.308400004626836 46 132869854 133234366 NA 2 NA NA 2 NA 364512 NA 10 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF260 19 36510695 36528660 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF263 16 3263800 3301401 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 18 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF264 19 57191500 57222846 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF266 19 9412461 9435578 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 9 1 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF267 16 31873758 31917357 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF268 12 133181409 133214831 FALSE 428 -0.308400004626836 46 132869854 133234366 NA 2 NA NA 2 NA 364512 NA 10 15 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF273 7 64870172 64930966 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF274 19 58183029 58213562 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 11 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF275 23 153334147 153360110 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF276 16 89720400 89740903 FALSE 534 -0.234744649087081 51 89587069 89729295 NA 2 NA NA 2 NA 142226 NA 8 24 5 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF277 7 112206588 112343096 FALSE 248 0.0587098201474026 79 106112527 121339182 0.310979917909445 4 2 0.310979917909445 4 2 15226655 2 51 15 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF28 19 52797409 52857600 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF280A 22 22513736 22520270 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF280B 22 22484421 22509154 FALSE 698 -0.388847552922956 43 20999007 23161516 NA 2 NA NA 2 NA 2162509 NA 28 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF280C 23 130202711 130268899 FALSE 721 -0.348898415462348 46 124191504 134373003 1 1 0 1 1 0 10181499 1 38 20 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF280D 15 56630181 56734086 FALSE 486 -0.086631802700127 63 49508204 61991073 0.39968910724052 3 1 0.39968910724052 3 1 12482869 2 69 24 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF281 1 200404940 200410056 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF282 7 149195485 149226248 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF283 19 43827292 43852017 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 6 3 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF284 19 44072144 44089613 FALSE 658 -0.851985286972629 23 43847684 44144686 0.307934776518021 0 0 0.307934776518021 0 0 297002 0 13 10 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF285 19 44382298 44401608 FALSE 659 -0.801689271107813 24 44148801 44524243 0.39968910724052 1 0 0.39968910724052 1 0 375442 1 11 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF286A 17 15699577 15720787 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF286B 17 18658429 18682262 FALSE 546 -0.340504726001618 44 17239697 21006964 0.213873728132233 2 0 0.213873728132233 2 0 3767267 2 48 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF287 17 16551387 16569206 FALSE 544 -0.432476680468626 39 16223200 17212252 NA 2 NA NA 2 NA 989052 NA 14 12 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF292 6 87152833 87264196 FALSE 200 0.518310252214992 105 87151867 87265009 0.397448435712946 6 NA 0.397448435712946 6 NA 113142 NA 1 49 3 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF296 19 45071500 45076588 FALSE 660 0.0562198978485724 82 44525218 45349585 0.298111653356898 4 NA 0.298111653356898 4 NA 824367 NA 29 7 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF3 7 100064033 100082548 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF30 19 34926903 34945170 FALSE 639 -0.405297231811747 39 34430686 34943334 NA 2 NA NA 2 NA 512648 NA 7 9 5 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF300 5 150894392 150904983 FALSE 177 -0.0284491958343739 68 141634927 173326026 0.39968910724052 3 1 0.39968910724052 3 1 31691099 2 174 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF302 19 34677639 34686397 FALSE 639 -0.405297231811747 39 34430686 34943334 NA 2 NA NA 2 NA 512648 NA 7 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF304 19 57351307 57359898 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF311 6 28994785 29005316 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF316 7 6637322 6656432 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF317 19 9140380 9163424 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 11 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF318 6 43307134 43369478 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 35 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF319 16 57994668 58000453 FALSE 523 -0.259325028843374 48 56849748 68233770 1 2 1 1 2 1 11384022 1 115 7 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF32 10 43643859 43648856 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 4 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF320 19 52863790 52897693 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF322 6 26634383 26659752 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 5 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF324 19 58467045 58475436 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 8 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF324B 19 58451604 58457833 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 8 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF326 1 89995112 90035531 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 14 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF329 19 58126252 58155110 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF330 4 141220887 141234697 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF331 19 53519527 53580269 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF333 19 14689801 14733746 FALSE 624 -0.254634436997458 50 14562514 15159559 1 2 1 1 2 1 597045 1 18 16 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF334 20 46499630 46513559 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF335 20 45948653 45972172 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 32 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF337 20 25674215 25696841 FALSE 688 -0.062404289305266 70 23377368 32327576 0.191163514035561 4 2 0.191163514035561 4 2 8950208 2 50 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF33A 10 38010650 38065088 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF33B 10 42574185 42638568 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF34 8 144773114 144787345 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF341 20 33731657 33792269 FALSE 690 -0.083236603914959 64 32889265 37365196 0.313405470508204 3 1 0.313405470508204 3 1 4475931 2 76 20 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF343 20 2481817 2524702 FALSE 685 -0.0171837643385264 74 289538 9532467 0.246063395031215 4 2 0.246063395031215 4 2 9242929 2 97 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF345 19 36850361 36913029 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF346 5 177022696 177081189 FALSE 178 -0.412273969650653 39 173328225 177079394 NA 2 NA NA 2 NA 3751169 NA 30 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF347 19 53124072 53159075 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF35 3 44648727 44660791 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF350 19 51964343 51986856 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF354A 5 178711592 178730702 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF354B 5 178859953 178888122 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF354C 5 179060415 179083537 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF358 19 7515292 7521026 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF362 1 33256545 33300719 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 10 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF365 10 62374192 62670301 FALSE 325 -0.0563014692991439 68 62198471 73154286 0.39968910724052 3 1 0.39968910724052 3 1 10955815 2 70 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF366 5 72442652 72507727 FALSE 168 -0.129050351979596 64 69174389 79729260 0.313405470508204 3 1 0.313405470508204 3 1 10554871 2 71 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF367 9 96385941 96418329 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 6 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF37A 10 38094334 38150293 FALSE 320 -0.173594273561622 58 32271736 43094667 0.229991145683771 3 1 0.229991145683771 3 1 10822931 2 20 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF382 19 36604817 36634113 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF383 19 37217926 37248738 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF384 12 6666477 6689572 FALSE 381 -0.0962006740122522 67 6638345 6823870 0.31995059840763 3 NA 0.31995059840763 3 NA 185525 NA 10 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF385A 12 54369133 54391298 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF385B 2 179441982 179861505 FALSE 94 0.355754312996103 101 179443289 181538825 0.397448435712946 5 NA 0.397448435712946 5 NA 2095536 NA 5 13 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF385C 17 42025576 42098479 FALSE 555 -0.167947713494169 62 41501348 42199311 0.235629703240478 3 NA 0.235629703240478 3 NA 697963 NA 32 18 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF385D 3 21412222 22373321 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF391 6 27374615 27403904 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF394 7 99486519 99500324 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF395 8 28345585 28402701 FALSE 262 -0.43868316499787 37 27433522 30751426 0.160356091311466 1 0 0.160356091311466 1 0 3317904 1 29 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF396 18 35366697 35377337 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 6 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF397 18 35241030 35267133 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 16 1 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF398 7 149126416 149182802 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF404 19 43872363 43901385 FALSE 658 -0.851985286972629 23 43847684 44144686 0.307934776518021 0 0 0.307934776518021 0 0 297002 0 13 8 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF407 18 74597870 75065671 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 32 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF408 11 46700818 46705912 FALSE 345 -0.036403890322975 68 9053645 47483471 0.39968910724052 3 1 0.39968910724052 3 1 38429826 2 196 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF41 23 47445879 47482946 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 11 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF410 14 73886617 73932511 FALSE 457 -0.0344945553864425 71 70671124 75009191 0.212208033369562 4 0 0.212208033369562 4 0 4338067 4 45 12 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF414 19 8509678 8514164 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF415 19 53107879 53133077 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 11 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF416 19 57571566 57578927 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF417 19 57900296 57916610 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF418 19 57921884 57935393 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF419 19 57487711 57496097 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF420 19 37007857 37130314 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 5 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF423 16 49487524 49857919 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF425 7 149102784 149126346 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF426 19 9523224 9538645 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 11 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF428 19 43607219 43619874 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF429 19 21496682 21556270 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 5 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF43 19 21804949 21852125 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF430 19 21020620 21060050 FALSE 636 0.270928168733892 97 20039398 21310483 0.39968910724052 4 NA 0.39968910724052 4 NA 1271085 NA 11 6 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF431 19 21142024 21196053 FALSE 636 0.270928168733892 97 20039398 21310483 0.39968910724052 4 NA 0.39968910724052 4 NA 1271085 NA 11 6 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF432 19 52031379 52095738 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 23 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF433 19 12014732 12035741 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF436 1 23359448 23369442 FALSE 18 0.0861439726439358 79 18857682 25813951 0.310979917909445 4 2 0.310979917909445 4 2 6956269 2 96 7 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF438 10 30820207 31031937 FALSE 318 -0.0724121287039431 64 27112041 31908898 0.313405470508204 3 1 0.313405470508204 3 1 4796857 2 18 13 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF439 19 11848726 11883750 FALSE 617 -0.416153402896496 39 11614810 11948366 NA 2 NA NA 2 NA 333556 NA 9 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF44 19 12224686 12294887 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF440 19 11814284 11835201 FALSE 617 -0.416153402896496 39 11614810 11948366 NA 2 NA NA 2 NA 333556 NA 9 10 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF441 19 11767000 11784078 FALSE 617 -0.416153402896496 39 11614810 11948366 NA 2 NA NA 2 NA 333556 NA 9 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF442 19 12345949 12365905 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 9 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF443 19 12429707 12441112 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 10 6 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF444 19 56132599 56160893 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF445 3 44431720 44477670 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 16 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF446 19 58474017 58481230 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF449 23 135344796 135363152 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF45 19 43912629 43935278 FALSE 658 -0.851985286972629 23 43847684 44144686 0.307934776518021 0 0 0.307934776518021 0 0 297002 0 13 10 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF451 6 57086844 57170307 FALSE 198 -0.0865139323561372 64 37212968 70165938 0.313405470508204 3 1 0.313405470508204 3 1 32952970 2 183 26 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF454 5 178941191 178966433 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 9 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF460 19 57280051 57293569 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF461 19 36637192 36666853 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF462 9 106863097 107013634 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 34 2 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF467 7 149764182 149773479 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 10 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF468 19 52838008 52890375 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 14 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF469 16 88427471 88440757 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 42 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF470 19 56567511 56588911 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF471 19 56507843 56530221 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF473 19 50025714 50053414 FALSE 668 -0.00756924034427425 76 49154418 50382007 0.39968910724052 3 1 0.39968910724052 3 1 1227589 2 48 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF474 5 122129513 122153571 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF479 7 57119614 57139864 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF48 16 30378106 30400108 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 19 3 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF480 19 52297177 52325922 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 6 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF483 9 111525159 111577844 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 17 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF484 9 92845031 92878038 FALSE 297 -0.251341355457208 47 85038306 95438072 0.205658471801404 2 0 0.205658471801404 2 0 10399766 2 54 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF485 10 43606407 43617903 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF486 19 20167228 20200490 FALSE 636 0.270928168733892 97 20039398 21310483 0.39968910724052 4 NA 0.39968910724052 4 NA 1271085 NA 11 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF487 10 43436841 43483179 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 5 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF488 10 47365496 47384273 FALSE 322 -0.296629924764822 45 43127485 50327341 1 2 1 1 2 1 7199856 1 61 3 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF490 19 12577961 12640098 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 18 1 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF491 19 11797667 11809622 FALSE 617 -0.416153402896496 39 11614810 11948366 NA 2 NA NA 2 NA 333556 NA 9 5 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF492 19 22634324 22667670 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF493 19 21397119 21427573 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF496 1 247297412 247331846 FALSE 45 -0.259945689995748 51 245749557 247491500 NA 2 NA NA 2 NA 1741943 NA 13 12 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF497 19 58354357 58362848 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 6 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF500 16 4748239 4767624 FALSE 515 0.00560742952139998 73 3974696 9748426 0.249162995977636 4 2 0.249162995977636 4 2 5773730 2 40 10 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF501 3 44729596 44737083 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 4 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF502 3 44712643 44723831 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF503 10 75397830 75401906 FALSE 327 -0.1374464737441 58 73914824 86716415 0.229991145683771 3 1 0.229991145683771 3 1 12801591 2 47 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF506 19 19785839 19821751 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF507 19 32345594 32387667 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF510 9 96755865 96778129 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF511 10 133308475 133313162 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 6 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF511-PRAP1 10 133309410 133352529 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 15 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF512 2 27582969 27623215 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF512B 20 63956702 63969865 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF513 2 27377231 27380790 FALSE 57 -0.137768456756315 60 26473208 29174485 0.390152951022651 3 1 0.390152951022651 3 1 2701277 2 54 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF514 2 95147330 95165413 FALSE 72 -0.297431743288301 44 95106429 96195026 0.213873728132233 2 0 0.213873728132233 2 0 1088597 2 15 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF516 18 76358190 76495190 FALSE 585 -0.267312555586219 47 63331832 80247320 0.205658471801404 2 0 0.205658471801404 2 0 16915488 2 51 16 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF517 8 144798876 144811169 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF518A 10 96129715 96205288 FALSE 333 -0.120710237177508 64 89029659 102502575 0.313405470508204 3 1 0.313405470508204 3 1 13472916 2 145 24 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF518B 4 10439874 10457410 FALSE 143 -0.263852344214521 48 2041982 16179660 1 2 1 1 2 1 14137678 1 103 13 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF519 18 14057457 14132490 FALSE 573 -0.100044259423994 65 47492 20959803 0.381557495702965 3 1 0.381557495702965 3 1 20912311 2 67 6 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF521 18 25061926 25352190 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 19 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF524 19 55600022 55603138 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 4 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF525 19 53365693 53392217 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 6 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF526 19 42220271 42228201 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF527 19 37371061 37393066 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF528 19 52397849 52418412 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF529 19 36534774 36605276 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF530 19 57599885 57612722 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF532 18 58862600 58986480 FALSE 583 -0.0997360195455249 67 58918304 62979103 0.31995059840763 3 NA 0.31995059840763 3 NA 4060799 NA 16 19 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF534 19 52429187 52452315 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 12 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF536 19 30228290 30713538 FALSE 638 0.00523964300113011 75 29823759 34428443 0.39968910724052 3 1 0.39968910724052 3 1 4604684 2 30 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF540 19 37551406 37614097 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 15 3 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF541 19 47520685 47555856 FALSE 664 -0.0237806976832711 71 47021146 48121368 0.212208033369562 4 0 0.212208033369562 4 0 1100222 4 27 23 0 FALSE CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF543 19 57320509 57330776 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF544 19 58228594 58277495 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF546 19 39984134 40021041 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF547 19 57363477 57379565 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF548 19 57389850 57402992 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF549 19 57527325 57557542 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 17 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF550 19 57535257 57559863 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 15 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF551 19 57681969 57717301 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 16 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF552 19 57803841 57814913 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF554 19 2819874 2835773 FALSE 595 -0.450163878767581 39 2732975 3094339 NA 2 NA NA 2 NA 361364 NA 12 9 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF555 19 2841435 2860484 FALSE 595 -0.450163878767581 39 2732975 3094339 NA 2 NA NA 2 NA 361364 NA 12 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF556 19 2867335 2883445 FALSE 595 -0.450163878767581 39 2732975 3094339 NA 2 NA NA 2 NA 361364 NA 12 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF557 19 7069444 7087968 FALSE 606 -0.300833190845045 44 5653194 7112254 0.213873728132233 2 0 0.213873728132233 2 0 1459060 2 48 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF558 19 8806170 8832328 FALSE 608 -0.4260530649559 36 7440446 8922993 0.315774863180649 1 0 0.315774863180649 1 0 1482547 1 53 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF559 19 9323772 9351162 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 12 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF559-ZNF177 19 9324174 9382617 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 21 2 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF560 19 9466507 9498607 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 14 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF561 19 9604680 9621399 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 9 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF562 19 9641808 9675086 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 8 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF563 19 12317477 12333720 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF564 19 12525370 12551542 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF565 19 36182060 36246257 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 12 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF566 19 36445119 36489902 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF567 19 36687612 36727701 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF568 19 36916329 36998700 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 16 9 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF569 19 37411155 37469275 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF57 19 2900898 2918476 FALSE 595 -0.450163878767581 39 2732975 3094339 NA 2 NA NA 2 NA 361364 NA 12 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF570 19 37467585 37488652 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF571 19 37554782 37594790 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 6 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF572 8 124973298 124979389 FALSE 275 0.00921907933759103 74 105801858 126557368 0.246063395031215 4 2 0.246063395031215 4 2 20755510 2 64 8 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF573 19 37735833 37817300 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 8 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF574 19 42068477 42081549 FALSE 653 -0.36329049278298 43 41439552 42271756 NA 2 NA NA 2 NA 832204 NA 27 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF575 19 43525497 43536130 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF576 19 43596392 43601157 FALSE 657 -0.238119891436316 47 43268044 43847378 0.205658471801404 2 0 0.205658471801404 2 0 579334 2 21 3 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF577 19 51804816 51890950 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 16 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF578 19 52453576 52512154 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF579 19 55576770 55580845 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 7 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF580 19 55635016 55643469 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 2 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF581 19 55635459 55645622 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF582 19 56375846 56393545 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF583 19 56397966 56436035 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF584 19 58401504 58418327 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF585A 19 37106734 37172741 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 15 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF585B 19 37181579 37218153 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 11 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF586 19 57769655 57819939 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF587 19 57849857 57865112 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF587B 19 57819741 57846238 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 6 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF589 3 48241100 48299253 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 12 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF592 15 84748635 84806432 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 19 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF593 1 26169871 26170873 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF594 17 5179536 5191883 FALSE 537 -0.704833888728741 29 5091667 5391656 0.39968910724052 1 0 0.39968910724052 1 0 299989 1 7 9 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF595 4 53285 88211 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 3 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF596 8 232137 264703 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF597 16 3432422 3443553 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 7 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF598 16 1997654 2009823 FALSE 507 -0.29702136903978 45 367751 2037034 1 2 1 1 2 1 1669283 1 78 17 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF599 19 34758076 34773229 FALSE 639 -0.405297231811747 39 34430686 34943334 NA 2 NA NA 2 NA 512648 NA 7 10 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF600 19 52749942 52786807 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF605 12 132918308 132956306 FALSE 428 -0.308400004626836 46 132869854 133234366 NA 2 NA NA 2 NA 364512 NA 10 10 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF606 19 57977053 58003349 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 13 0 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF607 19 37696363 37719790 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF608 5 124636913 124748807 FALSE 174 0.0074982384267952 74 96784013 135941125 0.246063395031215 4 2 0.246063395031215 4 2 39157112 2 149 22 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF609 15 64460742 64686068 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 21 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF610 19 52336245 52367778 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF611 19 52702813 52735073 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 9 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF613 19 51927147 51948759 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF614 19 52012765 52030240 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF615 19 51991332 52008230 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 14 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF616 19 52113091 52139922 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF618 9 113876282 114056591 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 21 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF619 3 40477113 40490236 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 10 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF620 3 40477131 40518736 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 18 4 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF621 3 40524878 40574685 FALSE 116 -0.289076598697298 44 37043152 40533064 0.213873728132233 2 0 0.213873728132233 2 0 3489912 2 36 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF622 5 16451519 16465792 FALSE 161 0.124152901382882 83 837441 38933408 0.353029999616203 4 2 0.353029999616203 4 2 38095967 2 111 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF623 8 143636013 143656418 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF624 17 16620737 16653856 FALSE 544 -0.432476680468626 39 16223200 17212252 NA 2 NA NA 2 NA 989052 NA 14 13 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF625 19 12142090 12156729 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF625-ZNF20 19 12132117 12156731 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF626 19 20620061 20661596 FALSE 636 0.270928168733892 97 20039398 21310483 0.39968910724052 4 NA 0.39968910724052 4 NA 1271085 NA 11 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF627 19 11559374 11619135 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 15 0 TRUE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF628 19 55476332 55484487 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 13 3 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF629 16 30778449 30787202 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF630 23 47983356 48071658 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 11 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF638 2 71276561 71435069 FALSE 64 0.0164988565055537 73 60942343 73293476 0.249162995977636 4 2 0.249162995977636 4 2 12351133 2 85 41 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF639 3 179322991 179338583 FALSE 128 0.146934569885818 86 179242975 181712000 0.360033220093454 4 NA 0.360033220093454 4 NA 2469025 NA 14 8 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF641 12 48337180 48351414 FALSE 403 -0.0440124723196544 69 48046374 49025097 0.39968910724052 3 1 0.39968910724052 3 1 978723 2 29 8 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF644 1 90915298 91022272 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 18 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF646 16 31074422 31084196 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 23 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF648 1 182054570 182061712 FALSE 34 0.0424625197522991 78 160093784 201209660 0.39968910724052 3 1 0.39968910724052 3 1 41115876 2 255 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF649 19 51889224 51905040 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF652 17 49289206 49362473 FALSE 564 -0.197515554527135 54 46704803 51170021 0.159525970813345 3 0 0.159525970813345 3 0 4465218 3 91 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF653 19 11483427 11505923 FALSE 616 0.0312924113965692 74 11107345 11614564 0.246063395031215 4 2 0.246063395031215 4 2 507219 2 23 12 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF654 3 88059274 88144665 FALSE 121 -0.0206780540273211 77 75738958 89482041 0.252310779181821 4 NA 0.252310779181821 4 NA 13743083 NA 14 17 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF655 7 99558406 99576453 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF658 9 66856426 66932141 FALSE 290 -1.24617711619839 15 39178263 68384537 0.39968910724052 0 0 0.39968910724052 0 0 29206274 0 21 15 1 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF66 19 20776304 20807322 FALSE 636 0.270928168733892 97 20039398 21310483 0.39968910724052 4 NA 0.39968910724052 4 NA 1271085 NA 11 5 2 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF660 3 44578223 44599694 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF662 3 42905731 42917641 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 9 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF664 12 123971845 124015439 FALSE 425 -0.0179759403667328 74 122061955 132621549 0.246063395031215 4 2 0.246063395031215 4 2 10559594 2 70 3 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF665 19 53159213 53193386 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 6 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF667 19 56439325 56478065 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 10 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF668 16 31060843 31074320 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF669 1 247099962 247104372 FALSE 45 -0.259945689995748 51 245749557 247491500 NA 2 NA NA 2 NA 1741943 NA 13 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF670 1 247036784 247078755 FALSE 45 -0.259945689995748 51 245749557 247491500 NA 2 NA NA 2 NA 1741943 NA 13 8 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF670-ZNF695 1 246945547 247078811 FALSE 45 -0.259945689995748 51 245749557 247491500 NA 2 NA NA 2 NA 1741943 NA 13 17 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF671 19 57719751 57727624 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF672 1 248838210 248849517 FALSE 49 -0.100969785741045 67 248650725 248918255 0.31995059840763 3 NA 0.31995059840763 3 NA 267530 NA 7 6 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF674 23 46497727 46545457 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 9 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF675 19 23525631 23687220 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF676 19 22179091 22215775 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF677 19 53235381 53254898 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF678 1 227563543 227677443 FALSE 41 -0.123520332951989 63 227016190 233294507 0.39968910724052 3 1 0.39968910724052 3 1 6278317 2 51 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF679 7 64228474 64266931 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF680 7 64519884 64563106 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 8 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF681 19 23739195 23758891 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF682 19 19997058 20039506 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 5 1 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF683 1 26361634 26374522 FALSE 19 -0.147426015176418 60 25814082 26696875 0.390152951022651 3 1 0.390152951022651 3 1 882793 2 28 10 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF684 1 40531561 40548169 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF687 1 151281618 151292180 FALSE 29 -0.0990756788922716 65 146965028 152085033 0.381557495702965 3 1 0.381557495702965 3 1 5120005 2 95 18 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF688 16 30569346 30572734 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF689 16 30602558 30624012 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF69 19 11887784 11914329 FALSE 617 -0.416153402896496 39 11614810 11948366 NA 2 NA NA 2 NA 333556 NA 9 4 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF691 1 42846573 42852477 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF692 1 248850006 248859144 FALSE 49 -0.100969785741045 67 248650725 248918255 0.31995059840763 3 NA 0.31995059840763 3 NA 267530 NA 7 13 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF695 1 246945547 247008093 FALSE 45 -0.259945689995748 51 245749557 247491500 NA 2 NA NA 2 NA 1741943 NA 13 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF696 8 143289676 143298061 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF697 1 119619422 119647773 FALSE 27 -0.157277929743064 60 117624577 146020151 0.390152951022651 3 1 0.390152951022651 3 1 28395574 2 47 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF699 19 9294275 9309838 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 10 3 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF7 8 144827464 144847509 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 11 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF70 22 23738678 23751092 FALSE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF700 19 11925068 11950773 FALSE 617 -0.416153402896496 39 11614810 11948366 NA 2 NA NA 2 NA 333556 NA 9 9 0 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF701 19 52555457 52587174 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 5 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF703 8 37695751 37700021 FALSE 266 -0.265904829022011 50 33503750 38388060 1 2 1 1 2 1 4884310 1 23 13 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF704 8 80628451 80874781 FALSE 269 0.0264509734137718 74 41929526 91395136 0.246063395031215 4 2 0.246063395031215 4 2 49465610 2 173 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF705A 12 8157034 8188537 FALSE 383 -0.245608465613088 48 7690016 11766850 1 2 1 1 2 1 4076834 1 80 7 2 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF705D 8 12104389 12115516 FALSE 259 -1.47337286372647 13 11974570 12191811 0.39968910724052 0 0 0.39968910724052 0 0 217241 0 8 1 0 FALSE HOMDEL PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF705E 11 71814045 71821548 FALSE 357 -0.0257141161984139 68 70152504 76410875 0.39968910724052 3 1 0.39968910724052 3 1 6258371 2 76 6 4 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF705G 8 7355517 7385558 FALSE 258 -0.307806250284923 45 166288 11974090 1 2 1 1 2 1 11807802 1 79 7 3 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF706 8 101177878 101206193 FALSE 271 0.00208055060676349 73 92102827 102225901 0.249162995977636 4 2 0.249162995977636 4 2 10123074 2 52 2 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF707 8 143684452 143713898 FALSE 278 -0.434925386270385 37 141478737 145054204 0.160356091311466 1 0 0.160356091311466 1 0 3575467 1 93 13 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF708 19 21291160 21329425 FALSE 636 0.270928168733892 97 20039398 21310483 0.39968910724052 4 NA 0.39968910724052 4 NA 1271085 NA 11 5 2 TRUE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF709 19 12461184 12513854 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 8 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF71 19 56595264 56626481 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF710 15 90001392 90082206 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 10 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF711 23 85244032 85273362 FALSE 717 -0.403073252148867 39 77829133 110792200 1 1 0 1 1 0 32963067 1 137 14 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF713 7 55887475 55942530 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF714 19 21082159 21125270 FALSE 636 0.270928168733892 97 20039398 21310483 0.39968910724052 4 NA 0.39968910724052 4 NA 1271085 NA 11 3 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF716 7 57450177 57473546 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF717 3 75678660 75785583 FALSE 120 -0.312005481177926 46 74369420 75738577 NA 2 NA NA 2 NA 1369157 NA 3 14 11 TRUE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF718 4 124480 202303 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF720 16 31713229 31794869 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF721 4 425815 499156 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 2 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF723 19 22832321 22858667 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF724 19 23221599 23250390 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 4 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF726 19 23914876 23945159 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF727 7 64045443 64078549 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF728 19 22975468 23003176 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF729 19 22286408 22317176 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 4 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF730 19 23075210 23147219 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 6 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF732 4 270675 305321 FALSE 141 -0.430983633239493 37 85803 1696172 0.160356091311466 1 0 0.160356091311466 1 0 1610369 1 27 6 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF735 7 64207090 64220508 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF736 7 64307459 64354860 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF737 19 20535825 20565809 FALSE 636 0.270928168733892 97 20039398 21310483 0.39968910724052 4 NA 0.39968910724052 4 NA 1271085 NA 11 4 1 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF738 19 21358930 21379302 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 5 1 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF74 22 20394115 20408461 FALSE 696 -0.315852566015791 45 15528179 20883577 1 2 1 1 2 1 5355398 1 62 11 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF740 12 53180700 53195141 FALSE 409 -0.131894759667689 64 53105606 57072784 0.313405470508204 3 1 0.313405470508204 3 1 3967178 2 126 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF746 7 149472696 149497817 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 13 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF747 16 30530367 30535347 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 5 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF749 19 57435329 57445485 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF750 17 82829435 82840578 FALSE 572 -0.226794870067398 54 80966382 83094485 0.159525970813345 3 0 0.159525970813345 3 0 2128103 3 66 9 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF75A 16 3305406 3318852 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF75D 23 135248920 135344087 FALSE 723 -0.465193248743722 39 134429138 155545126 1 1 0 1 1 0 21115988 1 184 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF76 6 35258909 35295985 FALSE 196 -0.0160421922844768 74 32664868 36135981 0.246063395031215 4 2 0.246063395031215 4 2 3471113 2 74 13 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF761 19 53431993 53458261 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF763 19 11965037 11980381 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF764 16 30553764 30558498 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF765 19 53389793 53430413 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF766 19 52269571 52296046 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 7 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF768 16 30524001 30526821 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF77 19 2933218 2944971 FALSE 595 -0.450163878767581 39 2732975 3094339 NA 2 NA NA 2 NA 361364 NA 12 9 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF770 15 34978341 34988287 FALSE 477 -0.181891089627763 59 32774275 37966653 0.22538042745788 3 0 0.22538042745788 3 0 5192378 3 23 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF771 16 30407297 30431108 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF772 19 57466663 57477570 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 9 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF773 19 57499915 57518404 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF774 15 90352245 90369146 FALSE 501 -0.0762559612247684 63 89805188 98648512 0.39968910724052 3 1 0.39968910724052 3 1 8843324 2 39 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF775 7 150379335 150398631 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF776 19 57746796 57758159 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF777 7 149431363 149461123 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 13 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF778 16 89217703 89237071 FALSE 531 -0.180281146680981 60 80685129 89268452 0.390152951022651 3 1 0.390152951022651 3 1 8583323 2 79 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF780A 19 40069152 40090938 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF780B 19 40028260 40056209 FALSE 649 -0.325435457247335 44 39182436 40226653 0.213873728132233 2 0 0.213873728132233 2 0 1044217 2 35 11 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF781 19 37667751 37692322 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 4 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF782 9 96816472 96875623 FALSE 299 -0.22885158403606 54 95880862 104124898 0.159525970813345 3 0 0.159525970813345 3 0 8244036 3 54 11 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF783 7 149262171 149297302 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 10 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF784 19 55620742 55624601 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 5 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF785 16 30573740 30585771 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 6 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF786 7 149069643 149090782 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF787 19 56087366 56121280 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF789 7 99472841 99503650 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 17 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF79 9 127424374 127445372 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 9 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF790 19 36817428 36850787 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 8 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF791 19 12610918 12633840 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 9 0 TRUE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF792 19 34956354 34964049 FALSE 640 -0.147583171664558 62 34943608 35134626 0.235629703240478 3 NA 0.235629703240478 3 NA 191018 NA 8 10 2 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF793 19 37506939 37548762 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 7 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF799 19 12390016 12401271 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 10 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF8 19 58278951 58302805 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 10 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF80 3 114234631 114237578 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 4 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF800 7 127346790 127431924 FALSE 249 -0.176616754467963 58 121350454 128878734 0.229991145683771 3 1 0.229991145683771 3 1 7528280 2 44 11 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF804A 2 184598366 184939492 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 16 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF804B 7 88759368 89337057 FALSE 237 -0.0453137846547105 68 81950522 92600001 0.39968910724052 3 1 0.39968910724052 3 1 10649479 2 41 22 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF805 19 57240685 57255135 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 10 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF808 19 52527652 52564464 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 8 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF81 23 47836902 48002561 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 19 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF813 19 53467735 53496255 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF814 19 57848731 57889074 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 21 1 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF816 19 52949379 52962911 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 4 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF816-ZNF321P 19 52928475 52962823 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 6 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF821 16 71859680 71895336 FALSE 526 -0.177761604927675 62 71358838 72171190 0.235629703240478 3 NA 0.235629703240478 3 NA 812352 NA 20 9 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF823 19 11721265 11739009 FALSE 617 -0.416153402896496 39 11614810 11948366 NA 2 NA NA 2 NA 333556 NA 9 10 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF827 4 145757627 145938635 FALSE 156 -0.210198975556573 52 125489965 176192805 0.261858812358373 3 1 0.261858812358373 3 1 50702840 2 152 20 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF829 19 36888124 36916291 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF83 19 52594060 52690496 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 6 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF830 17 34961530 34963775 FALSE 548 0.218531072864417 91 30971098 35258787 0.39968910724052 4 2 0.39968910724052 4 2 4287689 2 39 5 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF831 20 59123381 59259113 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 21 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF835 19 56661981 56671783 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF836 19 52153864 52171643 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 14 2 TRUE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF837 19 58367618 58381060 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF839 14 102317377 102342702 FALSE 465 -0.0796316736703077 63 95191684 102726572 0.39968910724052 3 1 0.39968910724052 3 1 7534888 2 44 15 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF84 12 133037292 133063304 FALSE 428 -0.308400004626836 46 132869854 133234366 NA 2 NA NA 2 NA 364512 NA 10 9 2 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF841 19 52064466 52095765 FALSE 673 -0.37396081426576 42 51024816 52168057 0.291828260490273 2 0 0.291828260490273 2 0 1143241 2 41 13 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF843 16 31432593 31443160 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF844 19 12064699 12081565 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF845 19 53333746 53356906 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF846 19 9751993 9793180 FALSE 611 -0.768777618583631 26 8969786 9847988 0.27051742281109 0 0 0.27051742281109 0 0 878202 0 23 9 0 FALSE HOMDEL suppress_large_homdel 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF85 19 20923222 20950697 FALSE 636 0.270928168733892 97 20039398 21310483 0.39968910724052 4 NA 0.39968910724052 4 NA 1271085 NA 11 5 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF850 19 36714383 36772825 FALSE 644 -0.615503022254391 30 36142375 37898221 0.37140042022976 1 0 0.37140042022976 1 0 1755846 1 35 16 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF852 3 44494847 44510636 FALSE 118 -0.337169298776785 44 41249557 52540483 0.213873728132233 2 0 0.213873728132233 2 0 11290926 2 209 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF853 7 6615617 6624290 FALSE 232 0.0696409734787671 79 193390 15394175 0.310979917909445 4 2 0.310979917909445 4 2 15200785 2 90 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF860 3 31981771 31991628 FALSE 115 0.00328954199003118 75 14523712 37042283 0.39968910724052 3 1 0.39968910724052 3 1 22518571 2 76 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF862 7 149838367 149867479 FALSE 255 -0.297055926755896 45 144401412 151275103 1 2 1 1 2 1 6873691 1 57 19 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF865 19 55605405 55617269 FALSE 679 -0.177223101379455 61 54803618 55711963 0.215931509200739 3 0 0.215931509200739 3 0 908345 3 50 12 0 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF878 19 12043805 12052939 FALSE 618 -0.794369457080519 25 11948667 12628989 0.39968910724052 1 0 0.39968910724052 1 0 680322 1 25 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF879 5 179023752 179035064 FALSE 181 -0.213137347944653 52 177609513 180591498 0.261858812358373 3 1 0.261858812358373 3 1 2981985 2 39 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF880 19 52369917 52385795 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 8 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF883 9 112997120 113050043 FALSE 301 -0.139908013635166 59 104599318 129142460 0.22538042745788 3 0 0.22538042745788 3 0 24543142 3 211 14 1 FALSE CNLOH BEFORE & LOSS PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF888 19 52904417 52923481 FALSE 675 -0.424638758510165 38 52269629 53794031 0.294538945086957 2 0 0.294538945086957 2 0 1524402 2 37 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF891 12 133106817 133130473 FALSE 428 -0.308400004626836 46 132869854 133234366 NA 2 NA NA 2 NA 364512 NA 10 6 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF90 19 20077994 20127076 FALSE 636 0.270928168733892 97 20039398 21310483 0.39968910724052 4 NA 0.39968910724052 4 NA 1271085 NA 11 4 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF91 19 23304991 23395560 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF92 7 65373799 65401135 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF93 19 19900913 19963464 FALSE 635 -0.120540327464735 63 18173961 20023037 0.39968910724052 3 1 0.39968910724052 3 1 1849076 2 62 4 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF98 19 22391019 22532485 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 6 2 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNF99 19 22752183 22784107 FALSE 637 0.323839512689279 99 21329200 29822488 0.397448435712946 5 NA 0.397448435712946 5 NA 8493288 NA 30 5 0 FALSE GAIN (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNFX1 20 49237946 49278426 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 36 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNHIT1 7 101217668 101224190 FALSE 243 -0.216974721306157 57 101087510 101616208 0.158317833115363 3 NA 0.158317833115363 3 NA 528698 NA 13 5 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNHIT2 11 65116403 65117708 FALSE 354 -0.129276079533363 64 64813788 66868956 0.313405470508204 3 1 0.313405470508204 3 1 2055168 2 93 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNHIT3 17 36486629 36499310 FALSE 549 -0.176748018023475 58 35259092 39451054 0.229991145683771 3 1 0.229991145683771 3 1 4191962 2 77 9 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNHIT6 1 85649423 85708433 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 11 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNRD1 6 30058899 30064909 FALSE 188 -0.400427834626327 36 29945706 31143055 0.315774863180649 1 0 0.315774863180649 1 0 1197349 1 39 4 2 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNRF1 16 74999030 75110994 FALSE 529 -0.0815078228819007 64 74410640 76521299 0.313405470508204 3 1 0.313405470508204 3 1 2110659 2 27 5 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNRF2 7 30284307 30367692 FALSE 233 0.190104915477942 87 15418603 34827512 0.206344716318008 6 3 0.206344716318008 6 3 19408909 3 106 5 0 FALSE AMP (BALANCED) suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNRF3 22 28883592 29057487 TRUE 700 -0.222049920942519 53 23275255 28891828 0.16513616132123 3 1 0.16513616132123 3 1 5616573 2 55 40 3 TRUE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZNRF4 19 5455431 5456856 FALSE 604 -0.336428649063697 46 5304635 5610091 NA 2 NA NA 2 NA 305456 NA 4 6 1 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZP1 11 60867562 60875693 FALSE 350 -0.273279618123811 48 56989850 61248513 1 2 1 1 2 1 4258663 1 99 14 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZP2 16 21197450 21214510 FALSE 521 -0.148020056287693 58 16208757 56658029 0.229991145683771 3 1 0.229991145683771 3 1 40449272 2 278 19 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZP3 7 76397518 76442071 FALSE 235 -0.0764063670323116 65 55807091 77954851 0.381557495702965 3 1 0.381557495702965 3 1 22147760 2 100 16 2 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZP4 1 237877864 237890922 FALSE 42 0.0764594352609482 78 233295482 243341169 0.39968910724052 3 1 0.39968910724052 3 1 10045687 2 42 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZPBP 7 49850421 50121329 FALSE 234 -0.00536425255944584 74 34834371 55805324 0.246063395031215 4 2 0.246063395031215 4 2 20970953 2 88 14 2 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZPBP2 17 39868164 39877896 FALSE 551 -0.178633749129299 62 39868328 40193677 0.235629703240478 3 NA 0.235629703240478 3 NA 325349 NA 13 9 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZPLD1 3 102099244 102479841 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 12 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZPR1 11 116773799 116788050 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 14 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZRANB1 10 124942123 124988189 FALSE 339 -0.276268129076387 48 121870042 133626701 1 2 1 1 2 1 11756659 1 82 12 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZRANB2 1 71063291 71081297 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 10 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZRANB3 2 135136916 135531236 FALSE 85 0.0154221686047696 73 132796715 164493118 0.249162995977636 4 2 0.249162995977636 4 2 31696403 2 80 30 1 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZRSR2 23 15790472 15823260 FALSE 705 -0.565391142027929 34 2782084 19645371 0.312402751065481 0 NA 0.312402751065481 0 0 16863287 0 80 15 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN1 19 58034032 58054631 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 7 1 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN10 16 3088890 3099317 FALSE 512 0.21183770344819 94 2853067 3204470 0.39968910724052 4 NA 0.39968910724052 4 NA 351403 NA 19 13 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN12 6 28378955 28399734 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 9 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN16 6 28124560 28130082 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN18 19 58083838 58118427 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 11 3 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN2 15 84600986 84627796 FALSE 494 -0.465844006957411 36 82130576 86988068 0.315774863180649 1 0 0.315774863180649 1 0 4857492 1 32 10 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN20 1 33472645 33496507 FALSE 21 -0.16096803464347 60 26827046 43185191 0.390152951022651 3 1 0.390152951022651 3 1 16358145 2 218 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN21 7 100049774 100065038 FALSE 240 -0.285360425609256 45 99660652 100993102 1 2 1 1 2 1 1332450 1 55 8 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN22 19 58327019 58342332 FALSE 683 -0.148072958508137 62 57988299 58571238 0.235629703240478 3 NA 0.235629703240478 3 NA 582939 NA 28 7 0 FALSE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN23 6 28431930 28443502 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN25 7 99616946 99632407 FALSE 239 -0.0186787778365465 73 92623132 99652576 0.249162995977636 4 2 0.249162995977636 4 2 7029444 2 57 9 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN26 6 28267010 28278224 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN29 15 43358172 43371025 FALSE 481 -0.258482203906127 47 41778082 43401842 0.205658471801404 2 0 0.205658471801404 2 0 1623760 2 32 13 3 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN30 18 35251058 35290245 FALSE 574 0.333353817331654 100 20960227 37565636 0.397448435712946 5 2 0.397448435712946 5 2 16605409 3 66 8 0 FALSE GAIN PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN31 6 28324693 28356271 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN32 16 3382081 3401065 FALSE 513 -0.342482157969738 46 3204508 3564696 NA 2 NA NA 2 NA 360188 NA 17 11 0 FALSE LOSS BEFORE or DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN4 19 57668935 57679152 FALSE 682 -0.694266352114896 29 57456027 57980312 0.39968910724052 1 0 0.39968910724052 1 0 524285 1 31 6 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN5A 19 56219670 56368383 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 23 1 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN5B 19 56189570 56197920 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 7 2 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN5C 19 56202301 56209452 FALSE 681 -0.461001218643113 38 55809523 57455765 0.294538945086957 2 0 0.294538945086957 2 0 1646242 2 42 7 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSCAN9 6 28224886 28233482 FALSE 186 -0.547655213548128 33 26373301 29942673 0.303590043810077 1 0 0.303590043810077 1 0 3569372 1 76 7 0 FALSE LOSS BEFORE & AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSWIM1 20 45881227 45885266 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 7 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSWIM2 2 186827835 186849208 FALSE 95 -0.114981419356918 65 181539175 189003809 0.381557495702965 3 1 0.381557495702965 3 1 7464634 2 21 13 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSWIM3 20 45857617 45879122 FALSE 692 -0.167791253476232 58 37518926 64273528 0.229991145683771 3 1 0.229991145683771 3 1 26754602 2 249 9 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSWIM4 19 13795460 13832230 FALSE 621 -0.225919342368309 57 13135243 13799725 0.158317833115363 3 NA 0.158317833115363 3 NA 664482 NA 8 18 1 TRUE LOSS (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSWIM5 1 45016399 45306209 FALSE 23 -0.305698596505034 45 44139417 47778441 1 2 1 1 2 1 3639024 1 62 21 1 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSWIM6 5 61332273 61546170 FALSE 167 0.00776881614611802 74 50797215 69171339 0.246063395031215 4 2 0.246063395031215 4 2 18374124 2 67 20 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSWIM7 17 15976560 15999717 FALSE 542 -0.367042877581197 40 7688672 16029506 0.199360539125166 2 0 0.199360539125166 2 0 8340834 2 87 5 0 FALSE LOSS BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSWIM8 10 73785582 73801797 FALSE 326 -0.204634991658895 52 73156415 73913973 0.261858812358373 3 1 0.261858812358373 3 1 757558 2 21 37 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZSWIM9 19 48170692 48197620 FALSE 665 0.584322352220344 105 48122950 48211862 0.397448435712946 6 NA 0.397448435712946 6 NA 88912 NA 3 12 1 FALSE AMP (many states) PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZUP1 6 116635618 116668794 FALSE 210 0.126503317911662 86 115956554 116920477 0.360033220093454 4 NA 0.360033220093454 4 NA 963923 NA 18 12 0 FALSE TETRAPLOID or CNLOH BEFORE PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZW10 11 113733187 113773811 FALSE 367 -0.0597975451793863 68 108383028 118431466 0.39968910724052 3 1 0.39968910724052 3 1 10048438 2 90 17 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZWILCH 15 66504959 66550128 FALSE 488 -0.0412763728240708 69 63678257 66781125 0.39968910724052 3 1 0.39968910724052 3 1 3102868 2 44 20 1 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZWINT 10 56357228 56361275 FALSE 323 -0.10677714450613 64 50343673 60085187 0.313405470508204 3 1 0.313405470508204 3 1 9741514 2 21 8 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZXDA 23 57906708 57910820 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 9 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZXDB 23 57591652 57597545 FALSE 711 -0.509071505885627 35 41447882 67695508 0.252021069663427 0 NA 0.252021069663427 0 0 26247626 0 174 9 0 FALSE HOMDEL suppress_segment_too_large 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZXDC 3 126437601 126475919 FALSE 123 -0.10613942932738 63 99795611 129562793 0.39968910724052 3 1 0.39968910724052 3 1 29767182 2 186 15 0 FALSE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZYG11A 1 52842511 52894998 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZYG11B 1 52726467 52827342 FALSE 24 0.0148383135373532 73 47794655 102987601 0.249162995977636 4 2 0.249162995977636 4 2 55192946 2 264 16 0 FALSE TETRAPLOID PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZYX 7 143381080 143391111 FALSE 253 -0.237207592951423 48 141730363 143401348 1 2 1 1 2 1 1670985 1 32 11 0 FALSE DOUBLE LOSS AFTER PASS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 ZZEF1 17 4004445 4143020 FALSE 536 -0.240245654262348 47 148164 5034608 0.205658471801404 2 0 0.205658471801404 2 0 4886444 2 104 63 1 FALSE LOSS BEFORE PASS