File Info
- Filename
- 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1.arm_level.txt
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0024/tools_recal_facets_tnseq_hrd__3585e3bf--20260226-133635/variant_calling/hrd/TiH/1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1/FACETS/1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1.arm_level.txt
- Size
- 2.6 KB
- Workflow Run
- nobles_exp024_recal_n7_hrd_update_01
- Published
- Feb 26, 2026 10:01 AM
Content
View in new tabsample arm tcn lcn cn_length arm_length frac_of_arm cn_state 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 2p 4 2 93097704 93097704 1 TETRAPLOID 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 4p 3 1 50642203 50642203 1 LOSS AFTER 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 4q 3 1 139298606 139298606 1 LOSS AFTER 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 5p 5 1 48048287.5 48048287.5 1 LOSS & GAIN 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 5q 4 2 129623791 132982637.5 0.97 TETRAPLOID 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 7p 5 2 55611934 59653679.5 0.93 GAIN 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 7q 4 2 97719669.5 97722430.5 1 TETRAPLOID 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 8p 2 1 38977713 44754077.5 0.87 DOUBLE LOSS AFTER 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 8q 5 2 96522323.5 100097790.5 0.96 GAIN 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 9p 3 1 44439207.5 44439207.5 1 LOSS AFTER 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 10p 4 2 40592957.5 40592957.5 1 TETRAPLOID 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 10q 4 2 92986599.5 92986599.5 1 TETRAPLOID 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 12q 5 2 97257036.5 97257036.5 1 GAIN 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 13q 4 2 95152374 95152374 1 TETRAPLOID 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 14q 5 1 82895462 86923627 0.95 LOSS & GAIN 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 15q 3 0 80243482 81345088 0.99 CNLOH BEFORE & LOSS 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 17p 2 0 20858800 24565774.5 0.85 LOSS BEFORE 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 18p 4 1 18113560.5 18113560.5 1 CNLOH AFTER 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 20p 5 2 27947752 28144192 0.99 GAIN 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 20q 3 1 31384263 36032521 0.87 LOSS AFTER 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 21q 3 1 32519631 34738491 0.94 LOSS AFTER 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 22q 3 1 35254093 35254093 1 LOSS AFTER 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 23p 0 0 57726976.5 57726976.5 1 HOMDEL 1136_7L-T1-TDNA-1_A23H5VJLT4_1_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1 23q 1 0 77715993 88878128.5 0.87 LOSS BEFORE & AFTER