Error executing process > 'DAQ_UMI:MARKDUPLICATES_SENTIEON (54158-12)'

Caused by:
  Process `DAQ_UMI:MARKDUPLICATES_SENTIEON (54158-12)` terminated with an error exit status (134)


Command executed:

  sentieon driver -t 31 -i 54158-12.bam -r Homo_sapiens_assembly38.fasta --algo LocusCollector --consensus --fun score_info 54158-12.md.score
  
  sentieon driver -t 31 -i 54158-12.bam -r Homo_sapiens_assembly38.fasta --algo Dedup --rmdup --score_info 54158-12.md.score --metrics 54158-12.md.metrics 54158-12.md.bam
  
  cat <<-END_VERSIONS > versions.yml
  "DAQ_UMI:MARKDUPLICATES_SENTIEON":
      sentieon: $(echo $(sentieon driver --version 2>&1) | sed -e "s/sentieon-genomics-//g")
  END_VERSIONS

Command exit status:
  134

Command output:
  (empty)

Command error:
  progress 30% @chr5:77000001, elapsed 77.3s, est remaining 180.4s, peak mem 14628MB, user 2180.5s, sys 17.1s, output queue size 687
  progress 35% @chr6:72000001, elapsed 91.7s, est remaining 170.3s, peak mem 14996MB, user 2571.5s, sys 21.5s, output queue size 848
  progress 40% @chr7:71000001, elapsed 103.2s, est remaining 154.8s, peak mem 15956MB, user 2932.1s, sys 24.0s, output queue size 1009
  progress 45% @chr8:83000001, elapsed 117.8s, est remaining 143.9s, peak mem 15956MB, user 3329.3s, sys 26.3s, output queue size 1171
  driver: /home/xliu/build/sentieon-genomics-202308.03.rc7/variant/src/algo/dedup/DedupImpl.cpp:677: bool reclassify_pc(PairedReadCluster&, SingleReadCluster&, const PairInfo&): Assertion `!(null1 && null2)' failed.
  Signal 6:
   code   -6
   addr   0x3e8000027be
  Registers:
   rax    0000000000000000
   rcx    00007f087d9ee9fc
   rdx    0000000000000006
   rbx    00007f080affd640
   rsp    00007f080ae39fa0
   rbp    00000000000027e4
   rsi    00000000000027e4
   rdi    00000000000027be
   r8     00007f080ae3a070
   r9     0000000000000000
   r10    0000000000000008
   r11    0000000000000246
   r12    0000000000000006
   r13    0000000000000016
   r14    000000000107bcc9
   r15    00007f080ae3a510
   rip    00007f087d9ee9fc
   rflags 0000000000000246
  Backtrace:
  /opt/conda/share/sentieon-202308.03-3/libexec/driver[0xc7f409]
  /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f087d99a520]
  /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f087d9ee9fc]
  /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f087d99a476]
  /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f087d9807f3]
  /lib/x86_64-linux-gnu/libc.so.6(+0x2871b)[0x7f087d98071b]
  /lib/x86_64-linux-gnu/libc.so.6(+0x39e96)[0x7f087d991e96]
  /opt/conda/share/sentieon-202308.03-3/libexec/driver[0x5cf5f8]
  /opt/conda/share/sentieon-202308.03-3/libexec/driver[0x5cf85b]
  /opt/conda/share/sentieon-202308.03-3/libexec/driver[0x5d47e1]
  /opt/conda/share/sentieon-202308.03-3/libexec/driver[0x63b227]
  /opt/conda/share/sentieon-202308.03-3/libexec/driver[0x63cea1]
  /opt/conda/share/sentieon-202308.03-3/libexec/driver[0xa62a3b]
  /opt/conda/share/sentieon-202308.03-3/libexec/driver[0xa663a9]
  /opt/conda/share/sentieon-202308.03-3/libexec/driver[0xc492aa]
  /opt/conda/share/sentieon-202308.03-3/libexec/driver[0xa6172d]
  /opt/conda/share/sentieon-202308.03-3/libexec/driver[0xc49854]
  /opt/conda/share/sentieon-202308.03-3/libexec/driver[0x562272]
  /opt/conda/share/sentieon-202308.03-3/libexec/driver[0x1069060]
  /lib/x86_64-linux-gnu/libc.so.6(+0x94ac3)[0x7f087d9ecac3]
  /lib/x86_64-linux-gnu/libc.so.6(+0x126850)[0x7f087da7e850]
  .command.sh: line 4: 10174 Aborted                 (core dumped) sentieon driver -t 31 -i 54158-12.bam -r Homo_sapiens_assembly38.fasta --algo Dedup --rmdup --score_info 54158-12.md.score --metrics 54158-12.md.metrics 54158-12.md.bam

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/bf0072839d3a01a97c33486b11fcf2

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/markduplicates_sentieon:202308.03-1

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`