#!/bin/bash -Ceuo pipefail
mosdepth \
    --threads 4 \
    --by xgen-exome-research-panel-v2-targets-hg38.bed \
    --fasta Homo_sapiens_assembly38.fasta \
     \
    16098090-cfDNA \
    16098090-cfDNA.md.bam

cat <<-END_VERSIONS > versions.yml
"DAQ:BAM_POSTDEDUP_QC:MOSDEPTH":
    mosdepth: $(mosdepth --version 2>&1 | sed 's/^.*mosdepth //; s/ .*$//')
END_VERSIONS