.command.sh - Workdir - DAQ:BAM_POSTDEDUP_QC:MOSDEPTH (3140_NA24385)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/757d75ccb9cc9062d831b5f61c751d/.command.sh
Size: 365 bytes
Task: DAQ:BAM_POSTDEDUP_QC:MOSDEPTH (3140_NA24385)
Attempt

Content

#!/bin/bash -Ceuo pipefail
mosdepth \
    --threads 4 \
    --by xgen-exome-research-panel-v2-targets-hg38.bed \
    --fasta Homo_sapiens_assembly38.fasta \
     \
    3140_NA24385 \
    3140_NA24385.md.bam

cat <<-END_VERSIONS > versions.yml
"DAQ:BAM_POSTDEDUP_QC:MOSDEPTH":
    mosdepth: $(mosdepth --version 2>&1 | sed 's/^.*mosdepth //; s/ .*$//')
END_VERSIONS