cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -i 14389853-cfDNA.bam -r Homo_sapiens_assembly38.fasta --algo LocusCollector --fun score_info 14389853-cfDNA.md.score
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:161000001, elapsed 0.1s, est remaining 1.3s, peak mem 75MB, user 0.1s, sys 1.5s, output queue size 15
progress 10% @chr2:74000001, elapsed 0.1s, est remaining 1.1s, peak mem 75MB, user 0.2s, sys 3.3s, output queue size 19
progress 15% @chr2:235000001, elapsed 0.2s, est remaining 1.0s, peak mem 75MB, user 0.3s, sys 4.9s, output queue size 20
progress 20% @chr3:126000001, elapsed 0.2s, est remaining 1.0s, peak mem 75MB, user 0.4s, sys 6.8s, output queue size 27
progress 25% @chr4:113000001, elapsed 0.3s, est remaining 0.9s, peak mem 75MB, user 0.5s, sys 8.6s, output queue size 14
progress 30% @chr5:113000001, elapsed 0.5s, est remaining 1.1s, peak mem 75MB, user 0.7s, sys 12.7s, output queue size 41
progress 35% @chr6:15000001, elapsed 0.6s, est remaining 1.1s, peak mem 75MB, user 0.9s, sys 17.2s, output queue size 50
progress 40% @chr7:49000001, elapsed 0.8s, est remaining 1.1s, peak mem 75MB, user 1.0s, sys 21.7s, output queue size 32
progress 45% @chr8:82000001, elapsed 0.9s, est remaining 1.1s, peak mem 75MB, user 1.2s, sys 26.1s, output queue size 36
progress 50% @chr9:60000001, elapsed 1.1s, est remaining 1.1s, peak mem 75MB, user 1.4s, sys 30.7s, output queue size 14
progress 55% @chr10:114000001, elapsed 1.2s, est remaining 1.0s, peak mem 75MB, user 1.6s, sys 35.1s, output queue size 36
progress 60% @chr11:110000001, elapsed 1.4s, est remaining 0.9s, peak mem 75MB, user 1.7s, sys 39.6s, output queue size 39
progress 65% @chr13:6000001, elapsed 1.5s, est remaining 0.8s, peak mem 75MB, user 1.9s, sys 44.4s, output queue size 28
progress 70% @chr14:52000001, elapsed 1.7s, est remaining 0.7s, peak mem 75MB, user 2.1s, sys 49.4s, output queue size 26
progress 75% @chr16:4000001, elapsed 1.9s, est remaining 0.6s, peak mem 75MB, user 2.2s, sys 54.5s, output queue size 9
progress 80% @chr17:66000001, elapsed 2.0s, est remaining 0.5s, peak mem 75MB, user 2.4s, sys 59.7s, output queue size 18
progress 85% @chr20:27000001, elapsed 2.2s, est remaining 0.4s, peak mem 75MB, user 2.6s, sys 65.0s, output queue size 8
progress 90% @chrX:19000001, elapsed 2.4s, est remaining 0.3s, peak mem 75MB, user 2.8s, sys 70.5s, output queue size 7
progress 95% @chrY:31000001, elapsed 2.6s, est remaining 0.1s, peak mem 75MB, user 3.0s, sys 75.8s, output queue size 12
progress 100% @HLA-C*01:06:1, elapsed 2.8s, est remaining 0.0s, peak mem 75MB, user 3.1s, sys 80.8s, output queue size 1538
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: LocusCollector
license: sentieon:Dedup=31
input file size: 33468
reads: 0
contig: 3367 intervals 3217346917 bases
LocusCollector::merge: 1 calls 0.000 user 0.000 sys 0.002 real
advance: 3219322 calls 0.191 user 13.758 sys 13.727 real
calc: 3219322 calls 0.170 user 13.707 sys 12.819 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.003 user 0.002 sys 2.753 real
fetch: 3219322 calls 0.270 user 13.665 sys 12.744 real
idle: 75 calls 0.001 user 0.003 sys 31.106 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 78749696 mem 3.266 user 81.459 sys 3.810 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -i 14389853-cfDNA.bam -r Homo_sapiens_assembly38.fasta --algo Dedup --score_info 14389853-cfDNA.md.score --metrics 14389853-cfDNA.md.metrics 14389853-cfDNA.md.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:160000001, elapsed 0.1s, est remaining 2.2s, peak mem 87MB, user 0.3s, sys 2.6s, output queue size 1
progress 10% @chr2:73000001, elapsed 0.2s, est remaining 1.9s, peak mem 87MB, user 0.5s, sys 5.2s, output queue size 11
progress 15% @chr2:233000001, elapsed 0.3s, est remaining 1.7s, peak mem 87MB, user 0.8s, sys 7.9s, output queue size 2
progress 20% @chr3:154000001, elapsed 0.4s, est remaining 1.6s, peak mem 87MB, user 1.0s, sys 10.5s, output queue size 13
progress 25% @chr4:115000001, elapsed 0.5s, est remaining 1.5s, peak mem 87MB, user 1.4s, sys 13.2s, output queue size 18
progress 30% @chr5:85000001, elapsed 0.6s, est remaining 1.4s, peak mem 87MB, user 1.6s, sys 15.9s, output queue size 1
progress 35% @chr6:66000001, elapsed 0.7s, est remaining 1.3s, peak mem 87MB, user 1.8s, sys 18.5s, output queue size 13
progress 40% @chr7:56000001, elapsed 0.8s, est remaining 1.2s, peak mem 87MB, user 2.1s, sys 21.2s, output queue size 18
progress 45% @chr8:57000001, elapsed 0.9s, est remaining 1.1s, peak mem 87MB, user 2.4s, sys 23.8s, output queue size 3
progress 50% @chr9:73000001, elapsed 1.0s, est remaining 1.0s, peak mem 87MB, user 2.7s, sys 26.4s, output queue size 1
progress 55% @chr10:96000001, elapsed 1.1s, est remaining 0.9s, peak mem 87MB, user 3.0s, sys 29.1s, output queue size 9
progress 60% @chr11:96000001, elapsed 1.2s, est remaining 0.8s, peak mem 87MB, user 3.3s, sys 31.8s, output queue size 27
progress 65% @chr13:2000001, elapsed 1.4s, est remaining 0.8s, peak mem 87MB, user 3.9s, sys 39.3s, output queue size 19
progress 70% @chr14:80000001, elapsed 1.7s, est remaining 0.7s, peak mem 87MB, user 4.6s, sys 47.2s, output queue size 10
progress 75% @chr16:23000001, elapsed 2.0s, est remaining 0.7s, peak mem 87MB, user 5.4s, sys 54.9s, output queue size 6
progress 80% @chr17:69000001, elapsed 2.3s, est remaining 0.6s, peak mem 87MB, user 6.0s, sys 63.1s, output queue size 15
progress 85% @chr20:13000001, elapsed 2.6s, est remaining 0.5s, peak mem 87MB, user 6.7s, sys 71.2s, output queue size 9
progress 90% @chrX:22000001, elapsed 2.8s, est remaining 0.3s, peak mem 87MB, user 7.5s, sys 79.0s, output queue size 14
progress 95% @chrY:29000001, elapsed 3.1s, est remaining 0.2s, peak mem 90MB, user 8.3s, sys 87.1s, output queue size 4
progress 100% @HLA-DRB1*15:03:01:01:1, elapsed 3.7s, est remaining 0.0s, peak mem 92MB, user 14.9s, sys 97.7s, output queue size 3
library 14389853-cfDNA:
optical dup clusters 0, maxdup 0, total optical dup pairs 0
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: Dedup
license: sentieon:Dedup=31
input file size: 33468
reads: 0
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 0.224 user 12.280 sys 11.547 real
calc: 3219322 calls 1.532 user 34.562 sys 36.661 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.000 user 0.006 sys 0.001 real
execute: 1 calls 0.006 user 0.004 sys 3.690 real
fetch: 3219322 calls 0.163 user 12.342 sys 11.205 real
idle: 82 calls 0.018 user 0.100 sys 31.248 real
init: 1 calls 0.000 user 0.000 sys 0.006 real
write: 3219322 calls 0.312 user 11.725 sys 12.107 real
overall: 97296384 mem 15.315 user 98.731 sys 4.758 real