File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/2015137d6c557b304222d2fc3c1669/.command.err
Size
3.6 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 5PercentHG514.md.bam --algo HsMetricAlgo --targets_list targets/IDT.Exomev2.targets.hg38.bed --baits_list baits/IDT.Exomev2.probes.hg38.bed 5PercentHG514_IDT.Exomev2.targets.hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:189000001, elapsed 4.6s, est remaining 87.7s, peak mem 1620MB, user 116.0s, sys 2.5s, output queue size 58
progress 10% @chr2:89000001, elapsed 8.0s, est remaining 72.2s, peak mem 1767MB, user 227.9s, sys 3.3s, output queue size 74
progress 15% @chr2:169000001, elapsed 11.4s, est remaining 64.5s, peak mem 4008MB, user 323.5s, sys 4.0s, output queue size 203
progress 20% @chr3:174000001, elapsed 15.1s, est remaining 60.4s, peak mem 6771MB, user 421.9s, sys 4.6s, output queue size 364
progress 25% @chr4:103000001, elapsed 17.7s, est remaining 53.1s, peak mem 8477MB, user 517.8s, sys 5.4s, output queue size 525
progress 30% @chr5:64000001, elapsed 19.8s, est remaining 46.3s, peak mem 8708MB, user 579.0s, sys 5.6s, output queue size 687
progress 35% @chr6:92000001, elapsed 23.2s, est remaining 43.0s, peak mem 8863MB, user 684.2s, sys 8.7s, output queue size 107
progress 40% @chr7:67000001, elapsed 26.1s, est remaining 39.1s, peak mem 8933MB, user 773.8s, sys 9.2s, output queue size 195
progress 45% @chr8:75000001, elapsed 29.6s, est remaining 36.2s, peak mem 9134MB, user 885.7s, sys 9.7s, output queue size 117
progress 50% @chr9:85000001, elapsed 32.1s, est remaining 32.1s, peak mem 9301MB, user 959.0s, sys 10.3s, output queue size 279
progress 55% @chr10:87000001, elapsed 36.2s, est remaining 29.7s, peak mem 9326MB, user 1071.6s, sys 10.9s, output queue size 423
progress 60% @chr11:125000001, elapsed 41.0s, est remaining 27.3s, peak mem 9326MB, user 1209.2s, sys 11.5s, output queue size 585
progress 65% @chr13:34000001, elapsed 45.2s, est remaining 24.4s, peak mem 9411MB, user 1333.6s, sys 12.3s, output queue size 747
progress 70% @chr14:72000001, elapsed 49.0s, est remaining 21.0s, peak mem 9413MB, user 1463.4s, sys 13.0s, output queue size 908
progress 75% @chr16:42000001, elapsed 53.4s, est remaining 17.8s, peak mem 9630MB, user 1584.0s, sys 13.6s, output queue size 1070
progress 80% @chr17:63000001, elapsed 62.0s, est remaining 15.5s, peak mem 10215MB, user 1844.8s, sys 14.9s, output queue size 205
progress 85% @chr20:23000001, elapsed 70.0s, est remaining 12.4s, peak mem 11139MB, user 2085.3s, sys 15.9s, output queue size 367
progress 90% @chrX:34000001, elapsed 78.5s, est remaining 8.7s, peak mem 13879MB, user 2326.5s, sys 16.9s, output queue size 529
progress 95% @chrY:52000001, elapsed 82.2s, est remaining 4.3s, peak mem 13879MB, user 2420.3s, sys 17.4s, output queue size 690
progress 100% @chr19:7000001, elapsed 113.7s, est remaining 0.0s, peak mem 16729MB, user 2647.3s, sys 21.4s, output queue size 3822
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 54772702096
reads: 1606890781
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1015.120 user 18.647 sys 1037.979 real
done: 1 calls 0.257 user 0.047 sys 0.304 real
exec_no_coor: 1 calls 0.023 user 0.023 sys 0.068 real
execute: 1 calls 0.002 user 0.001 sys 113.734 real
idle: 909 calls 0.197 user 0.011 sys 886.972 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 17558224896 mem 2649.301 user 22.218 sys 115.732 real