File Info

Filename
output/Reports/Quality_Metrics.csv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/1d26e6edede97b34c591f5ba720d8a/output/Reports/Quality_Metrics.csv
Size
5.0 KB
Task
DAQ:BCL_TO_FASTQ:BCLCONVERT (20260529_LH00995_0049_B23YT2HLT4;L003)
Attempt

Content

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Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
3 SH032_HG514 GCCTATCA AATGGTCG 1 30015468300 29172207492 1183588675482 39.43 0.97
3 SH032_HG514 GCCTATCA AATGGTCG 2 30015468300 28686489053 1173399996944 39.09 0.96
3 40PercentHG514 CTTGGATG TCGCTATC 1 22886470650 22223654515 902004433813 39.41 0.97
3 40PercentHG514 CTTGGATG TCGCTATC 2 22886470650 21893058454 895063391890 39.11 0.96
3 20PercentHG514 AGTCTCAC CGTCCATT 1 33688276800 32727830467 1328150146921 39.42 0.97
3 20PercentHG514 AGTCTCAC CGTCCATT 2 33688276800 32206568233 1317083750518 39.10 0.96
3 10PercentHG514 CTCATCAG TACTAGCG 1 425347050 413564541 16777826901 39.45 0.97
3 10PercentHG514 CTCATCAG TACTAGCG 2 425347050 404188149 16582027503 38.98 0.95
3 5PercentHG514 TGTACCGT CCTAGAGA 1 15063095400 14653096833 594204442410 39.45 0.97
3 5PercentHG514 TGTACCGT CCTAGAGA 2 15063095400 14439029553 589773147516 39.15 0.96
3 2_5PercentHG514 AAGTCGAG CGCAATGT 1 44944529700 43634378709 1771099239732 39.41 0.97
3 2_5PercentHG514 AAGTCGAG CGCAATGT 2 44944529700 43008433493 1758297595841 39.12 0.96
3 1_25PercentHG514 CACGTTGT ACACCTCA 1 45047019600 43799068608 1776985246503 39.45 0.97
3 1_25PercentHG514 CACGTTGT ACACCTCA 2 45047019600 43165369857 1763356143960 39.14 0.96
3 SH032_HG513 TCACAGCA GAGGCATT 1 7560053850 7349893908 298183350285 39.44 0.97
3 SH032_HG513 TCACAGCA GAGGCATT 2 7560053850 7219438657 295445745547 39.08 0.95
3 3140_NA24385 CTACTTGG TACTCCAG 1 50213029800 48790802998 1980296746645 39.44 0.97
3 3140_NA24385 CTACTTGG TACTCCAG 2 50213029800 47551567256 1954269170795 38.92 0.95
3 40PercentNA24385 CCTCAGTT CAGCATAC 1 7618767750 7406087395 300387372532 39.43 0.97
3 40PercentNA24385 CCTCAGTT CAGCATAC 2 7618767750 7306244008 298364773717 39.16 0.96
3 20PercentNA24385 TCCTACCT ACTCTCCA 1 38353508250 37190477764 1510180652008 39.38 0.97
3 20PercentNA24385 TCCTACCT ACTCTCCA 2 38353508250 36622682198 1498266926996 39.06 0.95
3 10PercentNA24385 ATGGCGAA CTCTATCG 1 44270350800 42965404040 1744219332743 39.40 0.97
3 10PercentNA24385 ATGGCGAA CTCTATCG 2 44270350800 42410874667 1732922808298 39.14 0.96
3 5PercentNA24385 CTTACCTG GCAATGAG 1 44469842700 43202864076 1753092571878 39.42 0.97
3 5PercentNA24385 CTTACCTG GCAATGAG 2 44469842700 42526885873 1739127906601 39.11 0.96
3 2_5PercentNA24385 CTCGATAC AAGCTGGT 1 32665060500 31786016944 1289166263251 39.47 0.97
3 2_5PercentNA24385 CTCGATAC AAGCTGGT 2 32665060500 31250072949 1277552198022 39.11 0.96
3 1_25PercentNA24385 TCCGTGAA CACGATTC 1 15477988800 15039198405 610142848278 39.42 0.97
3 1_25PercentNA24385 TCCGTGAA CACGATTC 2 15477988800 14845652669 606251357405 39.17 0.96
3 3140_NA24143 TAGAGCTC AGAAGCCT 1 31838504100 30929501909 1254985912370 39.42 0.97
3 3140_NA24143 TAGAGCTC AGAAGCCT 2 31838504100 30436350282 1244817784791 39.10 0.96
3 D0000162_22q TGACTGAC CAGAACTG 1 0 0 0 0.00 0.00
3 D0000162_22q TGACTGAC CAGAACTG 2 0 0 0 0.00 0.00
3 D0001483_22q TAGACGTG CTCACCAA 1 38799407100 37737407498 1530834786791 39.46 0.97
3 D0001483_22q TAGACGTG CTCACCAA 2 38799407100 37277989275 1520743131441 39.20 0.96
3 D0001109_22q CCGGAATT ACCGAATG 1 27652955250 26933579527 1091787462976 39.48 0.97
3 D0001109_22q CCGGAATT ACCGAATG 2 27652955250 26569259436 1083663239316 39.19 0.96
3 D0000476_22q CTCCTAGA GCTTCACA 1 30532528650 29710584178 1204845796096 39.46 0.97
3 D0000476_22q CTCCTAGA GCTTCACA 2 30532528650 29321110159 1196106590062 39.17 0.96
3 13432478-cfDNA AGCGGAAT ACTGCACT 1 0 0 0 0.00 0.00
3 13432478-cfDNA AGCGGAAT ACTGCACT 2 0 0 0 0.00 0.00
3 13511611-cfDNA GTGAGCTT CGGATCAA 1 26234153250 25553286558 1035883481340 39.49 0.97
3 13511611-cfDNA GTGAGCTT CGGATCAA 2 26234153250 25297008856 1030303285141 39.27 0.96
3 13739430-cfDNA CGTGATCA GAATGGCA 1 72125100 70287931 2848662022 39.50 0.97
3 13739430-cfDNA CGTGATCA GAATGGCA 2 72125100 69422502 2830054293 39.24 0.96
3 13929215-cfDNA TCGCATTG ACAGCAAG 1 0 0 0 0.00 0.00
3 13929215-cfDNA TCGCATTG ACAGCAAG 2 0 0 0 0.00 0.00
3 14138939-cfDNA TGACGCAT TCAGTAGG 1 0 0 0 0.00 0.00
3 14138939-cfDNA TGACGCAT TCAGTAGG 2 0 0 0 0.00 0.00
3 14389853-cfDNA CCGATGTA CAACTTGG 1 0 0 0 0.00 0.00
3 14389853-cfDNA CCGATGTA CAACTTGG 2 0 0 0 0.00 0.00
3 14558439-cfDNA TTCGCAGT TCCGATCA 1 0 0 0 0.00 0.00
3 14558439-cfDNA TTCGCAGT TCCGATCA 2 0 0 0 0.00 0.00
3 14668865-cfDNA ACGACAGA CGCAACTA 1 0 0 0 0.00 0.00
3 14668865-cfDNA ACGACAGA CGCAACTA 2 0 0 0 0.00 0.00
3 14862332-cfDNA AGCTTGAG GATCAGAC 1 0 0 0 0.00 0.00
3 14862332-cfDNA AGCTTGAG GATCAGAC 2 0 0 0 0.00 0.00
3 15451964-cfDNA GAGTGGTT GCATAACG 1 27838537050 27095878150 1098628854214 39.46 0.97
3 15451964-cfDNA GAGTGGTT GCATAACG 2 27838537050 26853585475 1093462304782 39.28 0.96
3 15921737-cfDNA GCTGTAAG TACAGAGC 1 99958200 97420758 3948013437 39.50 0.97
3 15921737-cfDNA GCTGTAAG TACAGAGC 2 99958200 96234365 3922658210 39.24 0.96
3 16098090-cfDNA CCAAGACT CTCGGTAA 1 0 0 0 0.00 0.00
3 16098090-cfDNA CCAAGACT CTCGGTAA 2 0 0 0 0.00 0.00
3 Undetermined 1 36617714550 31290920346 1345922350230 36.76 0.85
3 Undetermined 2 36617714550 30775369182 1326097596936 36.21 0.84
67 rows