File Info

Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/e1d57a6b0856e4d7ac8ad0696baab9/.command.sh
Size
358 bytes
Task
DAQ:BAM_POSTDEDUP_QC:MOSDEPTH (14138939-cfDNA)
Attempt

Content

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#!/bin/bash -Ceuo pipefail
mosdepth \
    --threads 4 \
    --by prenatal-exome-v1-targets-hg38.bed \
    --fasta Homo_sapiens_assembly38.fasta \
     \
    14138939-cfDNA \
    14138939-cfDNA.md.bam

cat <<-END_VERSIONS > versions.yml
"DAQ:BAM_POSTDEDUP_QC:MOSDEPTH":
    mosdepth: $(mosdepth --version 2>&1 | sed 's/^.*mosdepth //; s/ .*$//')
END_VERSIONS