Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/d0c7ccbbd9a0945f92da90f7b58892/14862332-cfDNA.md.bam.bai
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-targets-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/e19c8bd878be48ccee5614509dd204/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/d0c7ccbbd9a0945f92da90f7b58892/14862332-cfDNA.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-probes-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/e19c8bd878be48ccee5614509dd204/.command.run
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 14862332-cfDNA.md.bam --algo HsMetricAlgo --targets_list targets/prenatal-exome-v1-targets-hg38.bed --baits_list baits/prenatal-exome-v1-probes-hg38.bed 14862332-cfDNA_prenatal-exome-v1-targets-hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.0s, est remaining 0.6s, peak mem 139MB, user 0.1s, sys 0.5s, output queue size 17
progress 10% @chr2:72000001, elapsed 0.1s, est remaining 0.6s, peak mem 139MB, user 0.1s, sys 1.5s, output queue size 1
progress 15% @chr2:236000001, elapsed 0.1s, est remaining 0.5s, peak mem 139MB, user 0.2s, sys 2.4s, output queue size 7
progress 20% @chr3:152000001, elapsed 0.1s, est remaining 0.5s, peak mem 139MB, user 0.2s, sys 3.2s, output queue size 1
progress 25% @chr4:116000001, elapsed 0.1s, est remaining 0.4s, peak mem 139MB, user 0.3s, sys 3.8s, output queue size 1
progress 30% @chr5:89000001, elapsed 0.2s, est remaining 0.4s, peak mem 139MB, user 0.4s, sys 4.6s, output queue size 3
progress 35% @chr6:64000001, elapsed 0.2s, est remaining 0.4s, peak mem 139MB, user 0.5s, sys 5.4s, output queue size 5
progress 40% @chr7:55000001, elapsed 0.2s, est remaining 0.4s, peak mem 139MB, user 0.5s, sys 6.2s, output queue size 13
progress 45% @chr8:46000001, elapsed 0.3s, est remaining 0.3s, peak mem 139MB, user 0.5s, sys 7.1s, output queue size 11
progress 50% @chr9:72000001, elapsed 0.3s, est remaining 0.3s, peak mem 139MB, user 0.6s, sys 7.9s, output queue size 10
progress 55% @chr10:95000001, elapsed 0.3s, est remaining 0.3s, peak mem 139MB, user 0.6s, sys 8.7s, output queue size 10
progress 60% @chr11:121000001, elapsed 0.3s, est remaining 0.2s, peak mem 139MB, user 0.6s, sys 9.5s, output queue size 5
progress 65% @chr13:18000001, elapsed 0.4s, est remaining 0.2s, peak mem 139MB, user 0.7s, sys 10.4s, output queue size 1
progress 70% @chr14:53000001, elapsed 0.4s, est remaining 0.2s, peak mem 139MB, user 0.7s, sys 11.3s, output queue size 8
progress 75% @chr16:13000001, elapsed 0.4s, est remaining 0.1s, peak mem 139MB, user 0.8s, sys 12.1s, output queue size 6
progress 80% @chr17:82000001, elapsed 0.5s, est remaining 0.1s, peak mem 139MB, user 0.9s, sys 12.9s, output queue size 2
progress 85% @chr20:21000001, elapsed 0.5s, est remaining 0.1s, peak mem 139MB, user 1.0s, sys 13.6s, output queue size 2
progress 90% @chrX:11000001, elapsed 0.5s, est remaining 0.1s, peak mem 139MB, user 1.0s, sys 14.4s, output queue size 10
progress 95% @chrY:25000001, elapsed 0.5s, est remaining 0.0s, peak mem 139MB, user 1.0s, sys 15.3s, output queue size 2
progress 100% @HLA-DRB1*07:01:01:02:1, elapsed 0.6s, est remaining 0.0s, peak mem 139MB, user 1.1s, sys 16.0s, output queue size 2498
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 38436
reads: 0
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 0.251 user 8.132 sys 8.433 real
done: 1 calls 0.000 user 0.003 sys 0.005 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.001 real
execute: 1 calls 0.002 user 0.001 sys 0.595 real
idle: 78 calls 0.001 user 0.002 sys 31.047 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 146563072 mem 1.622 user 16.766 sys 2.228 real