File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/cf4326e7289c19525a84ee77847058/.command.err
Size
3.5 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 14389853-cfDNA.md.bam --algo HsMetricAlgo --targets_list targets/prenatal-exome-v1-targets-hg38.bed --baits_list baits/prenatal-exome-v1-probes-hg38.bed 14389853-cfDNA_prenatal-exome-v1-targets-hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.0s, est remaining 0.6s, peak mem 139MB, user 0.0s, sys 0.6s, output queue size 8
progress 10% @chr2:51000001, elapsed 0.1s, est remaining 0.5s, peak mem 139MB, user 0.1s, sys 1.2s, output queue size 22
progress 15% @chr2:235000001, elapsed 0.1s, est remaining 0.4s, peak mem 139MB, user 0.1s, sys 1.9s, output queue size 6
progress 20% @chr3:154000001, elapsed 0.1s, est remaining 0.4s, peak mem 139MB, user 0.1s, sys 2.6s, output queue size 11
progress 25% @chr4:101000001, elapsed 0.1s, est remaining 0.4s, peak mem 139MB, user 0.2s, sys 3.3s, output queue size 14
progress 30% @chr5:86000001, elapsed 0.2s, est remaining 0.4s, peak mem 139MB, user 0.3s, sys 4.0s, output queue size 1
progress 35% @chr6:67000001, elapsed 0.2s, est remaining 0.3s, peak mem 139MB, user 0.3s, sys 4.6s, output queue size 5
progress 40% @chr7:58000001, elapsed 0.2s, est remaining 0.3s, peak mem 139MB, user 0.4s, sys 5.3s, output queue size 14
progress 45% @chr8:49000001, elapsed 0.2s, est remaining 0.3s, peak mem 139MB, user 0.5s, sys 5.8s, output queue size 18
progress 50% @chr9:54000001, elapsed 0.2s, est remaining 0.2s, peak mem 139MB, user 0.6s, sys 6.4s, output queue size 19
progress 55% @chr10:96000001, elapsed 0.3s, est remaining 0.2s, peak mem 139MB, user 0.6s, sys 7.0s, output queue size 7
progress 60% @chr11:123000001, elapsed 0.3s, est remaining 0.2s, peak mem 139MB, user 0.6s, sys 7.9s, output queue size 11
progress 65% @chr13:17000001, elapsed 0.3s, est remaining 0.2s, peak mem 139MB, user 0.7s, sys 8.5s, output queue size 15
progress 70% @chr14:43000001, elapsed 0.3s, est remaining 0.1s, peak mem 139MB, user 0.7s, sys 9.1s, output queue size 18
progress 75% @chr16:12000001, elapsed 0.4s, est remaining 0.1s, peak mem 139MB, user 0.7s, sys 9.9s, output queue size 16
progress 80% @chr17:66000001, elapsed 0.4s, est remaining 0.1s, peak mem 139MB, user 0.8s, sys 10.4s, output queue size 18
progress 85% @chr20:24000001, elapsed 0.4s, est remaining 0.1s, peak mem 139MB, user 0.8s, sys 11.2s, output queue size 5
progress 90% @chrX:22000001, elapsed 0.4s, est remaining 0.0s, peak mem 139MB, user 0.9s, sys 11.8s, output queue size 14
progress 95% @chrY:22000001, elapsed 0.5s, est remaining 0.0s, peak mem 139MB, user 1.0s, sys 12.4s, output queue size 22
progress 100% @HLA-C*03:40:01:1, elapsed 0.5s, est remaining 0.0s, peak mem 139MB, user 1.0s, sys 12.9s, output queue size 2681
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 38435
reads: 0
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 0.215 user 6.337 sys 6.804 real
done: 1 calls 0.002 user 0.000 sys 0.004 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.001 real
execute: 1 calls 0.004 user 0.002 sys 0.493 real
idle: 77 calls 0.001 user 0.001 sys 31.064 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 146563072 mem 1.530 user 13.714 sys 2.072 real