File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/61cec2734dbdff3b2d64c22de82327/.command.err
Size
3.6 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 40PercentNA24385.md.bam --algo HsMetricAlgo --targets_list targets/prenatal-exome-v1-targets-hg38.bed --baits_list baits/prenatal-exome-v1-probes-hg38.bed 40PercentNA24385_prenatal-exome-v1-targets-hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:189000001, elapsed 2.4s, est remaining 46.4s, peak mem 836MB, user 56.8s, sys 3.2s, output queue size 160
progress 10% @chr2:89000001, elapsed 4.2s, est remaining 38.2s, peak mem 865MB, user 117.2s, sys 4.0s, output queue size 74
progress 15% @chr2:169000001, elapsed 6.0s, est remaining 34.2s, peak mem 1891MB, user 167.3s, sys 4.6s, output queue size 203
progress 20% @chr3:174000001, elapsed 7.9s, est remaining 31.8s, peak mem 3217MB, user 219.6s, sys 5.1s, output queue size 364
progress 25% @chr4:103000001, elapsed 9.3s, est remaining 28.0s, peak mem 3881MB, user 269.8s, sys 5.6s, output queue size 525
progress 30% @chr5:83000001, elapsed 10.5s, est remaining 24.5s, peak mem 3927MB, user 301.9s, sys 5.9s, output queue size 687
progress 35% @chr6:65000001, elapsed 12.3s, est remaining 22.9s, peak mem 3998MB, user 354.1s, sys 8.5s, output queue size 429
progress 40% @chr7:67000001, elapsed 13.9s, est remaining 20.9s, peak mem 4067MB, user 407.8s, sys 9.1s, output queue size 195
progress 45% @chr8:37000001, elapsed 15.8s, est remaining 19.3s, peak mem 4259MB, user 463.1s, sys 9.7s, output queue size 356
progress 50% @chr9:102000001, elapsed 17.1s, est remaining 17.1s, peak mem 4290MB, user 502.6s, sys 10.0s, output queue size 279
progress 55% @chr10:118000001, elapsed 19.3s, est remaining 15.8s, peak mem 4335MB, user 567.4s, sys 10.4s, output queue size 423
progress 60% @chr12:3000001, elapsed 21.8s, est remaining 14.5s, peak mem 4335MB, user 639.0s, sys 10.9s, output queue size 585
progress 65% @chr13:34000001, elapsed 24.2s, est remaining 13.0s, peak mem 4352MB, user 705.6s, sys 11.4s, output queue size 747
progress 70% @chr14:72000001, elapsed 26.4s, est remaining 11.3s, peak mem 4361MB, user 782.1s, sys 11.9s, output queue size 908
progress 75% @chr16:41000001, elapsed 28.7s, est remaining 9.6s, peak mem 4460MB, user 847.8s, sys 12.3s, output queue size 1070
progress 80% @chr17:44000001, elapsed 33.4s, est remaining 8.4s, peak mem 4717MB, user 987.2s, sys 13.0s, output queue size 205
progress 85% @chr20:42000001, elapsed 37.9s, est remaining 6.7s, peak mem 4856MB, user 1122.3s, sys 13.8s, output queue size 367
progress 90% @chrX:39000001, elapsed 42.7s, est remaining 4.7s, peak mem 6398MB, user 1254.3s, sys 14.5s, output queue size 529
progress 95% @chrY:54000001, elapsed 44.5s, est remaining 2.3s, peak mem 6398MB, user 1303.9s, sys 14.8s, output queue size 691
progress 100% @chr19:7000001, elapsed 62.7s, est remaining 0.0s, peak mem 7907MB, user 1437.2s, sys 17.5s, output queue size 3822
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 28604630315
reads: 815465726
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 543.870 user 13.847 sys 562.858 real
done: 1 calls 0.381 user 0.059 sys 0.444 real
exec_no_coor: 1 calls 0.010 user 0.115 sys 0.158 real
execute: 1 calls 0.002 user 0.001 sys 62.798 real
idle: 570 calls 0.145 user 0.001 sys 534.092 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8291688448 mem 1439.774 user 18.078 sys 65.053 real