File Info

Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/61cec2734dbdff3b2d64c22de82327/.command.sh
Size
540 bytes
Task
DAQ:BAM_POSTDEDUP_QC:SENTIEON_HSMETRICS (40PercentNA24385)
Attempt

Content

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#!/bin/bash -Ceuo pipefail
sentieon driver \
    -t 31 \
    -r Homo_sapiens_assembly38.fasta \
    -i 40PercentNA24385.md.bam \
     \
    --algo HsMetricAlgo \
    --targets_list targets/prenatal-exome-v1-targets-hg38.bed \
    --baits_list baits/prenatal-exome-v1-probes-hg38.bed \
    40PercentNA24385_prenatal-exome-v1-targets-hg38.sentieon.hs_metrics

cat <<-END_VERSIONS > versions.yml
"DAQ:BAM_POSTDEDUP_QC:SENTIEON_HSMETRICS":
    sentieon: $(echo $(sentieon driver --version 2>&1) | sed -e "s/sentieon-genomics-//g")
END_VERSIONS