File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/d4ba7b4817ebcdc76c3fdcf5814d2c/.command.log
Size
1.6 KB
Task
DAQ:SAMTOOLS_MERGE (16098090-cfDNA)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/9e41bcab2c3bdaa57df187aeeb9f81/16098090-cfDNA.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/d4ba7b4817ebcdc76c3fdcf5814d2c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/848cb4aa2ede96bcae23b5b530e5d1/16098090-cfDNA.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/a5697f6ca3c386e59f051de53c4cd3/16098090-cfDNA.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/fe163e5a085592010d0be905122cbf/16098090-cfDNA.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/b60372071db77bab38e7e863d3a929/16098090-cfDNA.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/20618b6fe0787493b55e44cdcff6e5/16098090-cfDNA.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/6dfc9d1022dbbc390f8d297025e327/16098090-cfDNA.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/d4ba7b4817ebcdc76c3fdcf5814d2c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/102010afb89aecea2ffab8dd0402bb/16098090-cfDNA.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory