.command.log - Workdir - DAQ:BAM_POSTDEDUP_QC:MOSDEPTH (14389853-cfDNA)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/a7792af86ae34e370b4781de27143b/.command.log
Size: 1.1 KB
Task: DAQ:BAM_POSTDEDUP_QC:MOSDEPTH (14389853-cfDNA)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/32793d1b0ea6eae062caa5c58b9f87/14389853-cfDNA.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/32793d1b0ea6eae062caa5c58b9f87/14389853-cfDNA.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/a7792af86ae34e370b4781de27143b/.command.sh
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-targets-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/a7792af86ae34e370b4781de27143b/.command.run
==> STAGING COMPLETE (6 inputs)

ls: cannot access '*.per-base.d4': No such file or directory
ls: cannot access '*.quantized.bed.gz': No such file or directory
ls: cannot access '*.quantized.bed.gz.csi': No such file or directory
ls: cannot access '*.thresholds.bed.gz': No such file or directory
ls: cannot access '*.thresholds.bed.gz.csi': No such file or directory