Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/1bfa9a5c444bfe6a1b7d6cf7e64c98/14558439-cfDNA.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/1bfa9a5c444bfe6a1b7d6cf7e64c98/14558439-cfDNA.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/aeb6c35c2624c41a8817b1dcde6dbb/.command.sh
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-targets-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/aeb6c35c2624c41a8817b1dcde6dbb/.command.run
==> STAGING COMPLETE (6 inputs)

ls: cannot access '*.per-base.d4': No such file or directory
ls: cannot access '*.quantized.bed.gz': No such file or directory
ls: cannot access '*.quantized.bed.gz.csi': No such file or directory
ls: cannot access '*.thresholds.bed.gz': No such file or directory
ls: cannot access '*.thresholds.bed.gz.csi': No such file or directory