cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -i 10PercentNA24385.bam -r Homo_sapiens_assembly38.fasta --algo LocusCollector --fun score_info 10PercentNA24385.md.score
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:159000001, elapsed 15.1s, est remaining 287.1s, peak mem 5915MB, user 363.7s, sys 15.8s, output queue size 145
progress 10% @chr1:228000001, elapsed 26.3s, est remaining 237.1s, peak mem 6871MB, user 720.0s, sys 21.6s, output queue size 167
progress 15% @chr3:18000001, elapsed 38.0s, est remaining 215.4s, peak mem 14503MB, user 1063.6s, sys 25.0s, output queue size 203
progress 20% @chr3:174000001, elapsed 50.0s, est remaining 200.0s, peak mem 22468MB, user 1351.9s, sys 27.7s, output queue size 364
progress 25% @chr4:108000001, elapsed 58.6s, est remaining 175.9s, peak mem 25927MB, user 1643.7s, sys 30.4s, output queue size 525
progress 30% @chr5:72000001, elapsed 66.0s, est remaining 154.0s, peak mem 27484MB, user 1872.0s, sys 32.4s, output queue size 687
progress 35% @chr6:94000001, elapsed 77.5s, est remaining 144.0s, peak mem 28292MB, user 2188.5s, sys 35.8s, output queue size 848
progress 40% @chr7:67000001, elapsed 87.3s, est remaining 131.0s, peak mem 28714MB, user 2512.5s, sys 39.5s, output queue size 1009
progress 45% @chr8:82000001, elapsed 99.3s, est remaining 121.4s, peak mem 29591MB, user 2882.3s, sys 54.8s, output queue size 357
progress 50% @chr9:102000001, elapsed 106.8s, est remaining 106.8s, peak mem 30327MB, user 3154.3s, sys 58.0s, output queue size 279
progress 55% @chr10:112000001, elapsed 120.0s, est remaining 98.2s, peak mem 30638MB, user 3518.1s, sys 61.7s, output queue size 423
progress 60% @chr11:126000001, elapsed 134.6s, est remaining 89.8s, peak mem 30683MB, user 3947.3s, sys 65.7s, output queue size 585
progress 65% @chr13:19000001, elapsed 148.3s, est remaining 79.8s, peak mem 31000MB, user 4332.6s, sys 69.3s, output queue size 747
progress 70% @chr14:79000001, elapsed 160.5s, est remaining 68.8s, peak mem 31000MB, user 4770.1s, sys 74.0s, output queue size 908
progress 75% @chr16:41000001, elapsed 174.2s, est remaining 58.1s, peak mem 31153MB, user 5108.6s, sys 76.6s, output queue size 1070
progress 80% @chr17:74000001, elapsed 201.7s, est remaining 50.4s, peak mem 33038MB, user 5844.8s, sys 83.5s, output queue size 1232
progress 85% @chr20:37000001, elapsed 229.8s, est remaining 40.5s, peak mem 33965MB, user 6626.8s, sys 89.2s, output queue size 1394
progress 90% @chrX:19000001, elapsed 258.5s, est remaining 28.7s, peak mem 42284MB, user 7577.6s, sys 98.4s, output queue size 529
progress 95% @chrY:53000001, elapsed 269.4s, est remaining 14.2s, peak mem 42284MB, user 7871.9s, sys 102.0s, output queue size 690
progress 100% @chr19:7000001, elapsed 372.6s, est remaining 0.0s, peak mem 49142MB, user 8733.1s, sys 125.8s, output queue size 3822
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: LocusCollector
license: sentieon:Dedup=31
input file size: 154377588209
reads: 4728159079
contig: 3367 intervals 3217346917 bases
LocusCollector::merge: 1 calls 11.475 user 3.489 sys 15.434 real
VcfLineRecordHelper::sort: 280 calls 18.357 user 0.291 sys 18.583 real
advance: 3219322 calls 3286.721 user 81.368 sys 3373.062 real
calc: 3219322 calls 2076.520 user 19.067 sys 2094.484 real
done: 1 calls 11.475 user 3.489 sys 15.434 real
execute: 1 calls 0.001 user 0.000 sys 372.692 real
fetch: 3219322 calls 2921.312 user 21.442 sys 2943.423 real
idle: 3434 calls 1.426 user 0.013 sys 3181.037 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 51798364160 mem 8796.184 user 132.308 sys 389.651 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -i 10PercentNA24385.bam -r Homo_sapiens_assembly38.fasta --algo Dedup --score_info 10PercentNA24385.md.score --metrics 10PercentNA24385.md.metrics 10PercentNA24385.md.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 67.5s, est remaining 1282.4s, peak mem 6757MB, user 1658.2s, sys 16.7s, output queue size 160
progress 10% @chr2:68000001, elapsed 115.6s, est remaining 1040.5s, peak mem 8556MB, user 3329.3s, sys 26.5s, output queue size 74
progress 15% @chr3:8000001, elapsed 170.4s, est remaining 965.5s, peak mem 30872MB, user 4780.5s, sys 36.2s, output queue size 203
progress 20% @chr3:176000001, elapsed 227.4s, est remaining 909.8s, peak mem 36045MB, user 6251.5s, sys 49.0s, output queue size 364
progress 25% @chr4:76000001, elapsed 270.6s, est remaining 811.9s, peak mem 38317MB, user 7632.9s, sys 65.4s, output queue size 525
progress 30% @chr5:97000001, elapsed 306.6s, est remaining 715.5s, peak mem 40389MB, user 8749.9s, sys 79.3s, output queue size 687
progress 35% @chr6:92000001, elapsed 368.0s, est remaining 683.4s, peak mem 40727MB, user 10361.0s, sys 93.3s, output queue size 848
progress 40% @chr7:67000001, elapsed 426.5s, est remaining 639.7s, peak mem 40727MB, user 12282.2s, sys 104.9s, output queue size 1009
progress 45% @chr8:64000001, elapsed 496.2s, est remaining 606.5s, peak mem 42651MB, user 14354.6s, sys 117.1s, output queue size 1171
progress 50% @chr9:76000001, elapsed 544.8s, est remaining 544.8s, peak mem 44717MB, user 15622.3s, sys 123.5s, output queue size 1333
progress 55% @chr10:118000001, elapsed 613.0s, est remaining 501.6s, peak mem 44717MB, user 17646.6s, sys 134.8s, output queue size 1494
progress 60% @chr11:126000001, elapsed 686.4s, est remaining 457.6s, peak mem 44717MB, user 20266.3s, sys 172.3s, output queue size 585
progress 65% @chr12:52000001, elapsed 751.2s, est remaining 404.5s, peak mem 44717MB, user 22117.6s, sys 183.5s, output queue size 747
progress 70% @chr14:78000001, elapsed 813.4s, est remaining 348.6s, peak mem 44717MB, user 24214.2s, sys 195.5s, output queue size 908
progress 75% @chr16:42000001, elapsed 879.7s, est remaining 293.2s, peak mem 44717MB, user 25956.9s, sys 205.7s, output queue size 1070
progress 80% @chr17:63000001, elapsed 1017.7s, est remaining 254.4s, peak mem 44993MB, user 29565.2s, sys 224.2s, output queue size 1232
progress 85% @chr19:38000001, elapsed 1142.1s, est remaining 201.5s, peak mem 45066MB, user 33266.9s, sys 240.8s, output queue size 1394
progress 90% @chrX:35000001, elapsed 1277.4s, est remaining 141.9s, peak mem 55612MB, user 37641.3s, sys 262.7s, output queue size 529
progress 95% @chrY:54000001, elapsed 1328.0s, est remaining 69.9s, peak mem 55612MB, user 38980.1s, sys 270.2s, output queue size 690
progress 100% @chr19:7000001, elapsed 1750.2s, est remaining 0.0s, peak mem 63327MB, user 42564.0s, sys 308.2s, output queue size 3822
library 10PercentNA24385:
chimeric_paired 91819572
duped 3437706590
duped_chimeric_paired 38418906
duped_paired 3437660320
duped_unpaired 46270
paired 4700959048
reads 4728096367
secondary_supplementary 27040979
unmapped 110882
unpaired 48170
optical dup clusters 0, maxdup 0, total optical dup pairs 0
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: Dedup
license: sentieon:Dedup=31
input file size: 154377588209
reads: 4728159079
contig: 3367 intervals 3217346917 bases
MateInfoByVcf::buildInfoMap: 2953209 calls 120.736 user 2.643 sys 128.769 real
MateInfoByVcf::load: 2953209 calls 2529.653 user 22.087 sys 2478.723 real
MateInfoByVcf::parse_events: 2953209 calls 2131.574 user 17.241 sys 2158.798 real
advance: 3219322 calls 3216.831 user 102.397 sys 3382.503 real
calc: 3219322 calls 32518.374 user 162.759 sys 32931.141 real
done: 1 calls 0.076 user 0.046 sys 0.124 real
exec_no_coor: 1 calls 0.462 user 0.137 sys 0.621 real
execute: 1 calls 0.002 user 0.007 sys 1759.810 real
fetch: 3219323 calls 3198.598 user 10.718 sys 3245.149 real
find_pairEnds: 2953209 calls 3830.614 user 7.481 sys 3921.762 real
idle: 1095900 calls 172.618 user 10.302 sys 11175.997 real
init: 1 calls 0.000 user 0.000 sys 0.007 real
markDup: 2953209 calls 13353.757 user 48.229 sys 13663.054 real
vcfadvance: 2953209 calls 36.686 user 4.827 sys 33.115 real
write: 3219323 calls 18840.422 user 112.714 sys 18908.541 real
overall: 66403221504 mem 42782.027 user 389.311 sys 1764.034 real