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Filename
qc_metrics.csv
Full Path
s3://natera-platform-sandbox/projects/lcvs/flowcells/20260603_LH00166_0309_A23WCJNLT4/reports/qc_metrics.csv
Size
9.1 KB
Workflow Run
prenatal-exome-fc-20260603-lh00166-0309-a23wcjnlt4-v4
Published
Jun 08, 2026 11:19 AM

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sample_id mosdepth_mean_coverage mosdepth_mean_coverage_target samtools_raw_total_sequences samtools_reads_mapped samtools_reads_unmapped samtools_reads_properly_paired samtools_reads_duplicated samtools_reads_mq0 samtools_bases_mapped_cigar samtools_mismatches samtools_error_rate samtools_average_length samtools_average_quality samtools_insert_size_average samtools_insert_size_std_dev samtools_properly_paired_percent samtools_duplication_rate samtools_mapping_rate sentieon_insert_size sentieon_prenatal_exome_v1_targets_mean_target_coverage sentieon_prenatal_exome_v1_targets_pct_selected_bases sentieon_prenatal_exome_v1_targets_zero_cvg_targets_pct sentieon_prenatal_exome_v1_targets_pct_target_bases_10x sentieon_prenatal_exome_v1_targets_pct_target_bases_20x sentieon_prenatal_exome_v1_targets_pct_target_bases_30x sentieon_prenatal_exome_v1_targets_at_dropout sentieon_prenatal_exome_v1_targets_gc_dropout
Filler-D0000335 12.76 471.48 2274315314 2274250107 65207 2200865214 1902149206 102185946 338328836286 1247700275 0.003687833 148.0 39.5 232.7 118.2 96.8 0.8363612531169018 0.9999713289535542 476.425 0.870337 0.00641433 0.988208 0.986339 0.984823 7.98106 1.02427e-06
Filler-D0000539 12.52 447.61 2650222464 2650131773 90691 2577234564 2292698289 110334720 394100804160 1468288002 0.003725666 148.0 39.5 242.0 123.5 97.2 0.8650965419482611 0.9999657798538681 450.611 0.868855 0.00629994 0.988517 0.986796 0.9854 6.49097 0.0018564
Filler-D0000637 11.5 400.16 2054423056 2054359329 63727 1996725434 1737110118 89631553 305840361108 1178064716 0.003851895 148.0 39.5 263.4 138.7 97.2 0.8455464481508428 0.9999689805856619 397.763 0.867629 0.0069651 0.987782 0.98618 0.984855 7.63691 0.00242733
Filler-D0000789 14.23 525.89 2154829846 2154764994 64852 2098063810 1751097044 94930378 320877380922 1143350401 0.0035632 148.0 39.5 257.1 135.4 97.4 0.8126381984408434 0.9999699038881792 523.616 0.868355 0.00708796 0.988276 0.986639 0.985523 8.83036 0.000146218
Filler-D0000861 7.97 300.96 1030978682 1030944931 33751 1006922140 804344985 43375084 153740133411 573465837 0.003730099 148.0 39.5 253.2 130.4 97.7 0.7801761559605167 0.9999672631446321 299.817 0.869037 0.00738453 0.986957 0.984868 0.982599 8.54652 0.000411437
Filler-D0000890 7.88 252.9 1586343792 1586283113 60679 1537566382 1371175961 66701736 236352034862 916244358 0.003876609 148.0 39.5 262.1 141.5 96.9 0.8643624212575479 0.9999617491490143 254.119 0.863361 0.00716846 0.986812 0.98481 0.983179 4.73011 0.106682
Filler-D0001009 10.86 340.75 1819420872 1819367210 53662 1760429940 1544077423 74757239 271479236977 1033491971 0.003806891 149.0 39.4 325.6 166.9 96.8 0.8486642352864027 0.9999705059995596 332.042 0.853853 0.00639315 0.988876 0.987202 0.985762 6.8525 0.0184511
Filler-D0001089 12.66 468.77 2089819592 2089745610 73982 1858443126 1711707356 98793814 311417383933 1192512997 0.003829308 148.0 39.5 217.8 101.3 88.9 0.8190694366884852 0.9999645988580625 468.152 0.868773 0.00865977 0.985939 0.984349 0.983235 5.69218 0.190302
Filler-D0001104 9.5 318.11 1602435854 1602370488 65366 1562056734 1341953930 61770041 239109910872 932593052 0.003900269 148.0 39.5 266.3 141.6 97.5 0.8374462707198013 0.9999592083515625 319.569 0.864455 0.00715575 0.987498 0.985727 0.9843 4.67075 0.0534986
Filler-D0001215 10.4 355.74 2255317486 2255246364 71122 2189264246 1966387396 95461495 335287312110 1283027519 0.003826651 148.0 39.5 254.5 135.4 97.1 0.8718893939352005 0.9999684647503327 356.868 0.864968 0.00713033 0.987379 0.985721 0.984336 5.30919 0.0836006
Filler-D0001322 11.86 407.63 2028626926 2028561891 65035 1972003164 1706065443 85528408 302409146010 1067184476 0.003528942 149.0 39.4 283.1 150.2 97.2 0.8409951682757069 0.9999679413700141 401.536 0.862574 0.00694815 0.988098 0.986503 0.985265 6.74996 0.00745315
Filler-D0001361 7.96 294.61 986124500 986094990 29510 958973626 761295395 43177288 146813653099 568670024 0.003873414 148.0 39.5 269.0 145.9 97.2 0.7720073834490473 0.9999700747725059 296.31 0.864086 0.00609658 0.98834 0.986417 0.984371 8.17952 0.00185597
Filler-D0001515 11.1 358.54 2260675068 2260604798 70270 2187606300 1966718673 94721628 336430185541 1282418361 0.003811841 148.0 39.4 286.6 158.7 96.8 0.8699696390865845 0.9999689163644105 354.35 0.856721 0.00569409 0.989061 0.986935 0.985269 5.01851 0.0542701
Filler-D0002474 10.8 364.37 2185859312 2185771707 87605 2129881670 1890207972 86940120 325313275679 1109595451 0.003410852 149.0 39.5 276.1 142.9 97.4 0.8647436555605734 0.999959921940301 361.546 0.865447 0.00686342 0.987746 0.986047 0.984752 5.26286 0.0506882
Filler-D0002530 12.39 465.7 2302179608 2302115806 63802 2218357092 1931971899 104487351 341355040766 1121381872 0.00328509 148.0 39.5 232.6 121.5 96.4 0.8391925166422549 0.9999722862630794 471.601 0.872902 0.00746926 0.987332 0.985786 0.984552 8.67198 1.15462e-06
Filler-D0002564 9.41 287.81 1741135634 1741067597 68037 1684956942 1499622554 72651859 259675225619 1038250597 0.003998266 148.0 39.4 305.9 166.0 96.8 0.8612899102839222 0.9999609237794739 282.961 0.853264 0.00674479 0.987959 0.986059 0.984548 5.09453 0.109347
Filler-D0002693 10.73 331.1 2481013808 2480938943 74865 2406147028 2205925237 96709903 369924345530 1373798557 0.003713728 149.0 39.4 303.1 162.9 97.0 0.8891225151133862 0.9999698248354126 326.65 0.85809 0.00649059 0.988299 0.986656 0.985315 4.73705 0.199777
Filler-D0002805 8.9 268.61 1795242486 1795186404 56082 1742234506 1566073951 74228111 268100857590 1036251614 0.003865156 149.0 39.4 301.8 164.6 97.0 0.8723467516020006 0.9999687607660596 263.053 0.855658 0.00663887 0.98813 0.986113 0.984559 3.73916 0.385359
Filler-D0002881 10.58 390.7 1651852606 1651774444 78162 1607522834 1338212906 72339706 245144483569 863842380 0.003523809 148.0 39.5 240.2 123.4 97.3 0.8101285194206971 0.9999526822189122 397.648 0.867267 0.00649906 0.988072 0.986306 0.984898 5.9659 0.0156773
Filler-D0002923 10.72 373.7 1602374868 1602326117 48751 1556844680 1303958140 67130721 239207453994 912872799 0.003816239 149.0 39.5 264.3 142.3 97.2 0.8137659707728266 0.9999695757834365 373.863 0.862562 0.00696086 0.987795 0.986116 0.984767 6.94261 0.00149929
Filler-D0002999 12.68 465.05 2880860410 2880754734 105676 2692440798 2505400102 135164772 425246956515 1516665650 0.003566553 147.0 39.5 221.5 112.6 93.5 0.8696707738088566 0.9999633179033481 479.529 0.871495 0.00702441 0.987671 0.986014 0.984513 8.62482 1.11388e-06
Filler-D0003090 12.1 437.69 1907043952 1906968343 75609 1859083960 1559574431 84337809 282897428668 1044997071 0.003693908 148.0 39.5 251.4 136.0 97.5 0.8177967945439362 0.9999603527753408 446.613 0.869072 0.00707102 0.987907 0.986374 0.985148 10.934 0.0348899
Filler-D0003105 10.01 346.59 1858536558 1858463875 72683 1808756394 1575012287 79207680 276324313629 998312018 0.003612827 148.0 39.5 253.3 133.1 97.3 0.8474475684755403 0.9999608923485055 349.893 0.867434 0.00715999 0.98722 0.98544 0.984014 8.10629 0.00111929
Filler-D0003157 13.57 493.72 1777947352 1777863812 83540 1728328648 1401154144 77646287 265707421561 1008113527 0.003794074 149.0 39.5 262.1 134.4 97.2 0.7880740351641189 0.9999530132318564 487.683 0.86599 0.0060415 0.988691 0.986676 0.985355 9.52535 0.00302727
Filler-D0003224 10.96 383.0 1877314350 1877257840 56510 1823595156 1568746710 82061316 278619189700 982474191 0.003526226 148.0 39.5 260.5 140.8 97.1 0.8356334728917403 0.9999698984882314 387.101 0.869361 0.0062025 0.988037 0.985923 0.984361 10.0537 1.12019e-06
Filler-D0003241 11.2 403.62 1810138046 1810079842 58204 1760846886 1487285758 78071787 268862263457 1012770428 0.003766875 148.0 39.5 248.1 132.8 97.3 0.8216421732511333 0.9999678455462949 412.276 0.868118 0.00611776 0.988104 0.985988 0.984479 10.1908 0.00210699
Filler-D0003441 10.17 334.46 2437529414 2437454113 75301 2361129534 2159169468 101263728 362337615835 1332691345 0.003678038 148.0 39.5 255.2 135.6 96.9 0.8858024258492087 0.9999691076548379 334.46 0.866527 0.00725743 0.987194 0.985361 0.983991 6.01472 0.00253228
T13-D0003360 9.76 319.48 2627461958 2627370573 91385 2565070170 2358239231 112794563 389426670916 1326394690 0.003406019 148.0 39.5 260.1 140.6 97.6 0.8975350618568309 0.9999652192871065 323.215 0.872865 0.00625757 0.987638 0.985471 0.983967 9.40724 8.85054e-07
T18-D0001467 13.07 399.15 1909377204 1909302840 74364 1821891984 1589480151 77116861 286037151181 1185713340 0.004145312 149.0 39.3 366.3 192.3 95.4 0.8324600019682649 0.999961053269179 381.791 0.835012 0.00542718 0.989402 0.987679 0.986406 4.52901 0.2891
T18-D0003255 12.06 400.97 2767991064 2767912784 78280 2683869670 2444262302 114350119 412230598842 1461695481 0.00354582 149.0 39.4 277.7 150.8 97.0 0.8830455899188553 0.9999717195618808 395.523 0.867555 0.00668971 0.988188 0.986433 0.985112 9.18884 0.00118552
T21-D0003322 10.78 367.2 2026396374 2026334623 61751 1966230240 1729818243 84044044 301501012958 1114888016 0.003697792 148.0 39.5 264.0 142.7 97.0 0.8536425870055372 0.999969526692412 370.435 0.868432 0.00613895 0.988302 0.986142 0.984479 9.19276 8.76974e-07
T21-D0003376 11.57 425.8 2165234856 2165166728 68128 2104997596 1826057304 94610822 320844244063 1109561880 0.003458257 148.0 39.5 240.3 127.9 97.2 0.8433529965305528 0.9999685355148374 437.142 0.873023 0.00728709 0.987586 0.986033 0.984885 9.93141 1.06218e-06
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