File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/a5875a0bcaaecf358aa5eb54b8b2d7/.command.out
Size
2.1 KB
Task
DAQ:BCL_TO_FASTQ:BCLCONVERT (20260603_LH00166_0309_A23WCJNLT4;L002)
Attempt

Content

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Sample sheet being processed by common lib? Yes
SampleSheet Settings: 
  FastqCompressionFormat = gzip
  OverrideCycles = Y150N1;I8;I8;Y150N1

Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
shared-thread-linux-native-asio output is disabled
bcl-convert Version 4.4.6
Copyright (c) 2014-2025 Illumina, Inc.
Command Line: --tiles s_2 --output-directory output --bcl-input-directory 20260603_LH00166_0309_A23WCJNLT4 --sample-sheet 20260603_LH00166_0309_A23WCJNLT4.samplesheet.csv 
Conversion Begins.
Input BCL Information:
    Read Structure: Y150;I8;I8;Y150
    RunInfo.xml file lists: 8 lanes, 6272 tiles
    BCL file format: cbcl
    Positions file format: slocs
    Filter file format: filter
Conversion Information:
    Tile filtering: converting 784/6272 tiles
    Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
    Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
    Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
    Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
    Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
    Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
    Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
    Sample Count: 32
    Expected number of sample FASTQ files to be created: 64
# CPU hw threads available: 64
Parallel Tiles: 4. Threads Per Tile: 16
SW compressors: 64
SW decompressors: 32
SW FASTQ compression level: 1
Lane 2 Post-run Information:
    Total clusters: 4274581461
    Total Genomic Reads: 8549162922
    Total Genomic Input Gigabases 1282.37
    Minimum reads for a sample: 126224460
    Maximum reads for a sample: 359573752
    Average reads per sample: 256145112.75
    Undetermined reads: 352519314
Conversion Complete.