Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-targets-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/338cae33ecb9079f2e2e2a3553d02b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/2105a6aa4a9e11aab75de646e7408d/Filler-D0002805.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-probes-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/338cae33ecb9079f2e2e2a3553d02b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/2105a6aa4a9e11aab75de646e7408d/Filler-D0002805.md.bam
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Filler-D0002805.md.bam --algo HsMetricAlgo --targets_list targets/prenatal-exome-v1-targets-hg38.bed --baits_list baits/prenatal-exome-v1-probes-hg38.bed Filler-D0002805_prenatal-exome-v1-targets-hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:189000001, elapsed 4.9s, est remaining 92.5s, peak mem 1548MB, user 113.7s, sys 11.5s, output queue size 52
progress 10% @chr2:68000001, elapsed 8.0s, est remaining 72.0s, peak mem 1867MB, user 216.3s, sys 13.2s, output queue size 94
progress 15% @chr2:201000001, elapsed 11.5s, est remaining 64.9s, peak mem 3680MB, user 313.5s, sys 15.0s, output queue size 203
progress 20% @chr3:173000001, elapsed 15.1s, est remaining 60.6s, peak mem 6098MB, user 413.3s, sys 16.1s, output queue size 364
progress 25% @chr4:120000001, elapsed 17.7s, est remaining 53.0s, peak mem 8214MB, user 504.8s, sys 17.1s, output queue size 525
progress 30% @chr5:1, elapsed 19.9s, est remaining 46.4s, peak mem 9716MB, user 568.7s, sys 17.8s, output queue size 687
progress 35% @chr6:91000001, elapsed 23.4s, est remaining 43.4s, peak mem 12118MB, user 655.9s, sys 18.5s, output queue size 848
progress 40% @chr7:79000001, elapsed 26.6s, est remaining 40.0s, peak mem 14248MB, user 739.9s, sys 19.2s, output queue size 1009
progress 45% @chr8:60000001, elapsed 30.6s, est remaining 37.4s, peak mem 17095MB, user 861.9s, sys 20.5s, output queue size 1171
progress 50% @chr9:88000001, elapsed 33.3s, est remaining 33.3s, peak mem 19088MB, user 937.2s, sys 21.5s, output queue size 1333
progress 55% @chr10:95000001, elapsed 37.7s, est remaining 30.8s, peak mem 21415MB, user 1076.6s, sys 23.1s, output queue size 1494
progress 60% @chr11:113000001, elapsed 42.5s, est remaining 28.3s, peak mem 22621MB, user 1210.7s, sys 24.1s, output queue size 1656
progress 65% @chr13:18000001, elapsed 46.8s, est remaining 25.2s, peak mem 23175MB, user 1331.0s, sys 25.2s, output queue size 1818
progress 70% @chr14:79000001, elapsed 51.0s, est remaining 21.8s, peak mem 23295MB, user 1467.5s, sys 26.2s, output queue size 1979
progress 75% @chr16:42000001, elapsed 55.7s, est remaining 18.6s, peak mem 23337MB, user 1588.9s, sys 26.9s, output queue size 2141
progress 80% @chr18:2000001, elapsed 64.9s, est remaining 16.2s, peak mem 23881MB, user 1902.9s, sys 42.6s, output queue size 205
progress 85% @chr20:18000001, elapsed 73.4s, est remaining 13.0s, peak mem 23881MB, user 2155.6s, sys 44.5s, output queue size 367
progress 90% @chrX:34000001, elapsed 83.0s, est remaining 9.2s, peak mem 27841MB, user 2424.5s, sys 46.3s, output queue size 529
progress 95% @chrY:53000001, elapsed 86.8s, est remaining 4.6s, peak mem 29941MB, user 2518.2s, sys 46.9s, output queue size 690
progress 100% @chr19:7000001, elapsed 164.5s, est remaining 0.0s, peak mem 39105MB, user 2831.1s, sys 73.1s, output queue size 3822
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 54660449163
reads: 1811422576
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1176.440 user 54.004 sys 1229.059 real
done: 1 calls 0.427 user 0.407 sys 0.842 real
exec_no_coor: 1 calls 0.011 user 0.248 sys 0.298 real
execute: 1 calls 0.010 user 0.000 sys 164.726 real
idle: 2289 calls 0.214 user 0.010 sys 2254.778 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 41004814336 mem 2834.543 user 74.872 sys 167.888 real