Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-targets-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1bfa6f6d6fcc41357a3025689ccb9f/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-probes-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/0b78d9cd79dbdd86ea76c648f8a067/T18-D0003255.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1bfa6f6d6fcc41357a3025689ccb9f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/0b78d9cd79dbdd86ea76c648f8a067/T18-D0003255.md.bam
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i T18-D0003255.md.bam --algo HsMetricAlgo --targets_list targets/prenatal-exome-v1-targets-hg38.bed --baits_list baits/prenatal-exome-v1-probes-hg38.bed T18-D0003255_prenatal-exome-v1-targets-hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:176000001, elapsed 7.7s, est remaining 145.5s, peak mem 2619MB, user 173.8s, sys 12.2s, output queue size 160
progress 10% @chr2:68000001, elapsed 12.3s, est remaining 110.9s, peak mem 2929MB, user 343.0s, sys 14.6s, output queue size 94
progress 15% @chr3:18000001, elapsed 17.3s, est remaining 97.9s, peak mem 5786MB, user 483.2s, sys 16.2s, output queue size 203
progress 20% @chr3:157000001, elapsed 22.9s, est remaining 91.6s, peak mem 9584MB, user 643.8s, sys 17.8s, output queue size 364
progress 25% @chr4:120000001, elapsed 26.7s, est remaining 80.0s, peak mem 12546MB, user 770.8s, sys 19.3s, output queue size 525
progress 30% @chr5:81000001, elapsed 29.8s, est remaining 69.5s, peak mem 14505MB, user 858.1s, sys 20.4s, output queue size 687
progress 35% @chr6:41000001, elapsed 35.0s, est remaining 65.0s, peak mem 17846MB, user 987.4s, sys 22.0s, output queue size 848
progress 40% @chr7:70000001, elapsed 39.7s, est remaining 59.5s, peak mem 20933MB, user 1123.5s, sys 23.0s, output queue size 1009
progress 45% @chr8:83000001, elapsed 45.9s, est remaining 56.1s, peak mem 25366MB, user 1297.8s, sys 25.0s, output queue size 1171
progress 50% @chr9:88000001, elapsed 49.7s, est remaining 49.7s, peak mem 27882MB, user 1428.0s, sys 26.5s, output queue size 1333
progress 55% @chr10:118000001, elapsed 56.8s, est remaining 46.5s, peak mem 31026MB, user 1616.8s, sys 27.8s, output queue size 1494
progress 60% @chr11:130000001, elapsed 65.0s, est remaining 43.4s, peak mem 32979MB, user 1851.1s, sys 29.8s, output queue size 1656
progress 65% @chr13:25000001, elapsed 71.8s, est remaining 38.7s, peak mem 33547MB, user 2048.7s, sys 31.3s, output queue size 1818
progress 70% @chr14:79000001, elapsed 77.8s, est remaining 33.3s, peak mem 33603MB, user 2244.6s, sys 32.5s, output queue size 1979
progress 75% @chr16:42000001, elapsed 85.0s, est remaining 28.3s, peak mem 33782MB, user 2474.6s, sys 34.1s, output queue size 2141
progress 80% @chr18:7000001, elapsed 100.1s, est remaining 25.0s, peak mem 34827MB, user 2935.1s, sys 65.0s, output queue size 205
progress 85% @chr20:23000001, elapsed 113.4s, est remaining 20.0s, peak mem 34827MB, user 3320.5s, sys 67.9s, output queue size 367
progress 90% @chrX:19000001, elapsed 127.9s, est remaining 14.2s, peak mem 41848MB, user 3740.2s, sys 70.7s, output queue size 529
progress 95% @chrY:52000001, elapsed 133.5s, est remaining 7.0s, peak mem 42394MB, user 3884.0s, sys 71.4s, output queue size 690
progress 100% @chr19:7000001, elapsed 215.4s, est remaining 0.0s, peak mem 49827MB, user 4316.7s, sys 91.3s, output queue size 3822
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 82653748354
reads: 2788134169
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1748.121 user 66.598 sys 1812.785 real
done: 1 calls 0.351 user 0.139 sys 0.496 real
exec_no_coor: 1 calls 0.048 user 0.135 sys 0.198 real
execute: 1 calls 0.000 user 0.005 sys 215.486 real
idle: 2342 calls 0.193 user 0.012 sys 2314.028 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 52247707648 mem 4320.317 user 93.266 sys 218.912 real