File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/04321d9ed0f51d985c11b5c0c1517f/.command.log
Size
1.6 KB
Task
DAQ:SAMTOOLS_MERGE (Filler-D0001104)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/04321d9ed0f51d985c11b5c0c1517f/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/235e4947039b4879d3ea126edfaebd/Filler-D0001104.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/0947a8e052ed7a5e2874a4058bbf88/Filler-D0001104.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/00cf904057f1053a3f51518e7e0c6b/Filler-D0001104.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/7a0afaccfcf3968100baf8357655c8/Filler-D0001104.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/04321d9ed0f51d985c11b5c0c1517f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/5cce13e159e76f73b3bb5b08d19a3b/Filler-D0001104.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/14f835478400a954f508476455853c/Filler-D0001104.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/27722b4cbe8dc17ac54e1568bac337/Filler-D0001104.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/b80a6f509b8cf64439f7ad26e045cc/Filler-D0001104.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory