File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/ca4ae4773398182bce5244ef85ec7b/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Filler-D0002923.md.bam --algo HsMetricAlgo --targets_list targets/prenatal-exome-v1-targets-hg38.bed --baits_list baits/prenatal-exome-v1-probes-hg38.bed Filler-D0002923_prenatal-exome-v1-targets-hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 4.7s, est remaining 89.6s, peak mem 1564MB, user 108.8s, sys 8.0s, output queue size 160
progress 10% @chr2:89000001, elapsed 7.8s, est remaining 69.9s, peak mem 1861MB, user 218.2s, sys 9.8s, output queue size 47
progress 15% @chr3:3000001, elapsed 10.9s, est remaining 61.8s, peak mem 3533MB, user 305.6s, sys 11.0s, output queue size 203
progress 20% @chr3:156000001, elapsed 14.4s, est remaining 57.7s, peak mem 5983MB, user 404.3s, sys 12.0s, output queue size 364
progress 25% @chr4:120000001, elapsed 16.9s, est remaining 50.6s, peak mem 7842MB, user 485.2s, sys 12.9s, output queue size 525
progress 30% @chr5:98000001, elapsed 18.9s, est remaining 44.0s, peak mem 9138MB, user 542.2s, sys 13.4s, output queue size 687
progress 35% @chr6:92000001, elapsed 22.2s, est remaining 41.1s, peak mem 11327MB, user 626.4s, sys 14.2s, output queue size 848
progress 40% @chr6:43000001, elapsed 25.2s, est remaining 37.8s, peak mem 13366MB, user 713.9s, sys 14.7s, output queue size 1009
progress 45% @chr7:128000001, elapsed 28.9s, est remaining 35.3s, peak mem 15696MB, user 831.7s, sys 16.2s, output queue size 1171
progress 50% @chr9:76000001, elapsed 31.4s, est remaining 31.4s, peak mem 16151MB, user 903.2s, sys 17.5s, output queue size 1333
progress 55% @chr10:120000001, elapsed 35.6s, est remaining 29.2s, peak mem 17295MB, user 1016.8s, sys 20.1s, output queue size 1494
progress 60% @chr11:113000001, elapsed 40.2s, est remaining 26.8s, peak mem 17491MB, user 1148.6s, sys 21.0s, output queue size 1656
progress 65% @chr13:25000001, elapsed 44.2s, est remaining 23.8s, peak mem 17507MB, user 1261.4s, sys 21.7s, output queue size 1818
progress 70% @chr14:68000001, elapsed 48.0s, est remaining 20.6s, peak mem 17507MB, user 1384.2s, sys 22.4s, output queue size 1979
progress 75% @chr16:42000001, elapsed 52.4s, est remaining 17.5s, peak mem 17706MB, user 1501.6s, sys 23.2s, output queue size 2141
progress 80% @chr18:1, elapsed 61.4s, est remaining 15.3s, peak mem 18087MB, user 1800.7s, sys 40.2s, output queue size 205
progress 85% @chr20:42000001, elapsed 69.6s, est remaining 12.3s, peak mem 18087MB, user 2040.9s, sys 41.7s, output queue size 367
progress 90% @chrX:35000001, elapsed 78.3s, est remaining 8.7s, peak mem 22315MB, user 2282.0s, sys 43.3s, output queue size 529
progress 95% @chrY:52000001, elapsed 81.7s, est remaining 4.3s, peak mem 24183MB, user 2377.5s, sys 43.8s, output queue size 690
progress 100% @chr19:7000001, elapsed 140.0s, est remaining 0.0s, peak mem 34083MB, user 2660.3s, sys 59.5s, output queue size 3822
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 49771800994
reads: 1618279821
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1051.365 user 44.376 sys 1095.420 real
done: 1 calls 0.569 user 0.370 sys 0.946 real
exec_no_coor: 1 calls 0.039 user 0.138 sys 0.214 real
execute: 1 calls 0.004 user 0.002 sys 140.416 real
idle: 1724 calls 0.199 user 0.012 sys 1686.730 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 35738898432 mem 2664.257 user 61.497 sys 143.655 real