File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/d459b7f553a27c2cab2116e937705d/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Filler-D0000890.md.bam --algo HsMetricAlgo --targets_list targets/prenatal-exome-v1-targets-hg38.bed --baits_list baits/prenatal-exome-v1-probes-hg38.bed Filler-D0000890_prenatal-exome-v1-targets-hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:167000001, elapsed 4.4s, est remaining 83.3s, peak mem 1549MB, user 99.6s, sys 3.7s, output queue size 160
progress 10% @chr2:68000001, elapsed 7.4s, est remaining 66.4s, peak mem 1992MB, user 204.7s, sys 5.8s, output queue size 170
progress 15% @chr3:18000001, elapsed 10.3s, est remaining 58.5s, peak mem 3532MB, user 290.5s, sys 7.0s, output queue size 203
progress 20% @chr3:161000001, elapsed 13.6s, est remaining 54.4s, peak mem 5722MB, user 384.9s, sys 7.9s, output queue size 364
progress 25% @chr4:124000001, elapsed 15.9s, est remaining 47.7s, peak mem 7528MB, user 461.3s, sys 8.7s, output queue size 525
progress 30% @chr5:97000001, elapsed 17.9s, est remaining 41.7s, peak mem 8824MB, user 516.0s, sys 9.2s, output queue size 686
progress 35% @chr6:91000001, elapsed 21.2s, est remaining 39.3s, peak mem 11081MB, user 599.6s, sys 9.8s, output queue size 848
progress 40% @chr7:43000001, elapsed 24.2s, est remaining 36.3s, peak mem 12990MB, user 682.1s, sys 10.6s, output queue size 1009
progress 45% @chr8:83000001, elapsed 27.8s, est remaining 34.0s, peak mem 15480MB, user 790.4s, sys 12.1s, output queue size 1171
progress 50% @chr9:102000001, elapsed 30.3s, est remaining 30.3s, peak mem 16993MB, user 858.5s, sys 12.9s, output queue size 1333
progress 55% @chr10:98000001, elapsed 34.7s, est remaining 28.4s, peak mem 17842MB, user 975.8s, sys 14.5s, output queue size 1494
progress 60% @chr12:5000001, elapsed 39.4s, est remaining 26.2s, peak mem 18988MB, user 1125.2s, sys 16.5s, output queue size 1656
progress 65% @chr12:56000001, elapsed 43.3s, est remaining 23.3s, peak mem 19168MB, user 1238.2s, sys 17.5s, output queue size 1818
progress 70% @chr14:86000001, elapsed 47.0s, est remaining 20.2s, peak mem 19168MB, user 1359.5s, sys 18.4s, output queue size 1979
progress 75% @chr16:37000001, elapsed 51.4s, est remaining 17.1s, peak mem 19308MB, user 1505.8s, sys 30.7s, output queue size 1070
progress 80% @chr18:9000001, elapsed 60.1s, est remaining 15.0s, peak mem 19308MB, user 1767.7s, sys 32.7s, output queue size 205
progress 85% @chr20:2000001, elapsed 68.0s, est remaining 12.0s, peak mem 19308MB, user 2001.6s, sys 34.0s, output queue size 367
progress 90% @chrX:22000001, elapsed 76.6s, est remaining 8.5s, peak mem 22554MB, user 2243.2s, sys 35.4s, output queue size 529
progress 95% @chrY:52000001, elapsed 80.1s, est remaining 4.2s, peak mem 24468MB, user 2329.9s, sys 35.9s, output queue size 690
progress 100% @chr19:7000001, elapsed 165.2s, est remaining 0.0s, peak mem 31908MB, user 2649.0s, sys 49.7s, output queue size 3822
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 47834677300
reads: 1602999702
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1056.333 user 39.314 sys 1096.998 real
done: 1 calls 0.398 user 0.209 sys 0.618 real
exec_no_coor: 1 calls 0.038 user 0.105 sys 0.158 real
execute: 1 calls 0.002 user 0.001 sys 165.461 real
idle: 2510 calls 0.277 user 0.012 sys 2477.315 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 33458327552 mem 2652.720 user 50.948 sys 168.154 real