.command.sh - Workdir - DAQ:CAT_FASTQ (Filler-D0001089)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/de80f8f322e3ba3abc5d2a59ec50c5/.command.sh
Size: 873 bytes
Task: DAQ:CAT_FASTQ (Filler-D0001089)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cat Filler-D0001089_S16_L002_R1_001.fastq.gz Filler-D0001089_S16_L004_R1_001.fastq.gz Filler-D0001089_S16_L005_R1_001.fastq.gz Filler-D0001089_S16_L001_R1_001.fastq.gz Filler-D0001089_S16_L008_R1_001.fastq.gz Filler-D0001089_S16_L007_R1_001.fastq.gz Filler-D0001089_S16_L006_R1_001.fastq.gz Filler-D0001089_S16_L003_R1_001.fastq.gz > Filler-D0001089_R1.fastq.gz
cat Filler-D0001089_S16_L002_R2_001.fastq.gz Filler-D0001089_S16_L004_R2_001.fastq.gz Filler-D0001089_S16_L005_R2_001.fastq.gz Filler-D0001089_S16_L001_R2_001.fastq.gz Filler-D0001089_S16_L008_R2_001.fastq.gz Filler-D0001089_S16_L007_R2_001.fastq.gz Filler-D0001089_S16_L006_R2_001.fastq.gz Filler-D0001089_S16_L003_R2_001.fastq.gz > Filler-D0001089_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"DAQ:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS