Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-targets-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/bd8b967f1b85fb5c88097af5e8fa70/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-probes-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/bd8b967f1b85fb5c88097af5e8fa70/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/f703491df633fe8b6b36376cd09f11/Filler-D0001104.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/f703491df633fe8b6b36376cd09f11/Filler-D0001104.md.bam.bai
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Filler-D0001104.md.bam --algo HsMetricAlgo --targets_list targets/prenatal-exome-v1-targets-hg38.bed --baits_list baits/prenatal-exome-v1-probes-hg38.bed Filler-D0001104_prenatal-exome-v1-targets-hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:189000001, elapsed 4.3s, est remaining 81.9s, peak mem 1498MB, user 107.4s, sys 3.6s, output queue size 52
progress 10% @chr2:89000001, elapsed 7.2s, est remaining 64.8s, peak mem 1679MB, user 206.2s, sys 4.6s, output queue size 47
progress 15% @chr3:18000001, elapsed 10.3s, est remaining 58.3s, peak mem 3349MB, user 289.6s, sys 5.4s, output queue size 203
progress 20% @chr3:133000001, elapsed 13.6s, est remaining 54.6s, peak mem 5598MB, user 382.3s, sys 6.2s, output queue size 364
progress 25% @chr4:138000001, elapsed 16.0s, est remaining 48.0s, peak mem 7321MB, user 462.2s, sys 7.2s, output queue size 525
progress 30% @chr5:81000001, elapsed 18.0s, est remaining 41.9s, peak mem 8587MB, user 521.0s, sys 7.7s, output queue size 687
progress 35% @chr6:63000001, elapsed 21.3s, est remaining 39.5s, peak mem 10741MB, user 603.3s, sys 8.2s, output queue size 848
progress 40% @chr7:50000001, elapsed 24.1s, est remaining 36.2s, peak mem 12694MB, user 689.2s, sys 8.9s, output queue size 1009
progress 45% @chr8:60000001, elapsed 27.6s, est remaining 33.7s, peak mem 14092MB, user 801.2s, sys 9.8s, output queue size 1171
progress 50% @chr9:66000001, elapsed 29.9s, est remaining 29.9s, peak mem 15036MB, user 868.8s, sys 10.3s, output queue size 1333
progress 55% @chr10:93000001, elapsed 34.0s, est remaining 27.8s, peak mem 15517MB, user 974.1s, sys 11.2s, output queue size 1494
progress 60% @chr11:113000001, elapsed 38.6s, est remaining 25.7s, peak mem 15517MB, user 1111.2s, sys 12.1s, output queue size 1656
progress 65% @chr12:109000001, elapsed 42.6s, est remaining 22.9s, peak mem 15517MB, user 1249.7s, sys 19.4s, output queue size 747
progress 70% @chr14:86000001, elapsed 46.3s, est remaining 19.9s, peak mem 15517MB, user 1376.2s, sys 20.2s, output queue size 908
progress 75% @chr16:42000001, elapsed 50.4s, est remaining 16.8s, peak mem 15517MB, user 1491.5s, sys 21.0s, output queue size 1070
progress 80% @chr18:6000001, elapsed 58.5s, est remaining 14.6s, peak mem 15517MB, user 1733.4s, sys 22.6s, output queue size 205
progress 85% @chr20:23000001, elapsed 66.1s, est remaining 11.7s, peak mem 15517MB, user 1961.8s, sys 24.1s, output queue size 367
progress 90% @chrX:36000001, elapsed 74.5s, est remaining 8.3s, peak mem 20365MB, user 2191.2s, sys 25.4s, output queue size 529
progress 95% @chrY:52000001, elapsed 78.1s, est remaining 4.1s, peak mem 22375MB, user 2281.6s, sys 26.2s, output queue size 690
progress 100% @chr19:7000001, elapsed 143.1s, est remaining 0.0s, peak mem 34120MB, user 2576.5s, sys 39.9s, output queue size 3822
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 49012773757
reads: 1619139196
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1032.690 user 33.901 sys 1069.965 real
done: 1 calls 0.455 user 0.516 sys 0.972 real
exec_no_coor: 1 calls 0.048 user 0.084 sys 0.164 real
execute: 1 calls 0.002 user 0.001 sys 143.448 real
idle: 1925 calls 0.213 user 0.007 sys 1885.726 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 35778195456 mem 2580.690 user 41.503 sys 146.542 real