Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/569cd9d28c75c64928d581e9a6413c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/ade1170c61f6894911b884a4a11ce5/Filler-D0000861.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/60c8ef7e89096deb1164336677e08d/Filler-D0000861.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/d4d69fcb5518576c54fc6ff205324a/Filler-D0000861.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/024b43a75bda0459a6b5013e122b64/Filler-D0000861.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/729807e0a5c5437caea00a77211600/Filler-D0000861.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/569cd9d28c75c64928d581e9a6413c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/0ae2647e425b3edc2d3137161d5d07/Filler-D0000861.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/d15c403b26efe1c32fb9a7daa43e73/Filler-D0000861.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/67aed92ab1d752155890e34074e727/Filler-D0000861.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory