.command.sh - Workdir - DAQ:CAT_FASTQ (Filler-D0002564)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/53452a522f9142c25f20e2b39c07f9/.command.sh
Size: 873 bytes
Task: DAQ:CAT_FASTQ (Filler-D0002564)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cat Filler-D0002564_S24_L002_R1_001.fastq.gz Filler-D0002564_S24_L004_R1_001.fastq.gz Filler-D0002564_S24_L005_R1_001.fastq.gz Filler-D0002564_S24_L001_R1_001.fastq.gz Filler-D0002564_S24_L008_R1_001.fastq.gz Filler-D0002564_S24_L007_R1_001.fastq.gz Filler-D0002564_S24_L006_R1_001.fastq.gz Filler-D0002564_S24_L003_R1_001.fastq.gz > Filler-D0002564_R1.fastq.gz
cat Filler-D0002564_S24_L002_R2_001.fastq.gz Filler-D0002564_S24_L004_R2_001.fastq.gz Filler-D0002564_S24_L005_R2_001.fastq.gz Filler-D0002564_S24_L001_R2_001.fastq.gz Filler-D0002564_S24_L008_R2_001.fastq.gz Filler-D0002564_S24_L007_R2_001.fastq.gz Filler-D0002564_S24_L006_R2_001.fastq.gz Filler-D0002564_S24_L003_R2_001.fastq.gz > Filler-D0002564_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"DAQ:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS