Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/390f7f8e06b1ffd5a303bc60e5a48c/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/7c58510d7b4e774943fa81bb1d1ee9/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/92692cf00f380f881e09f0570c645a/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/a50e666070a3949736f39750a9229a/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/cc5277885dd561a18710afe9fd81ec/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/93767c9498238f684989e47fab59ce/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/03e76cbb3fc88d4fb766c1c261f65f/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/2e27c993f221f4d7c8acae74558ef8/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/9d0fc1a56867789501ae295684e110/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/b49015f14964b78c98af386fcbe250/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/d2fb763e1d24391186eb0f48c1a6c3/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/c88f4e7cd2b5ae8937efc26a365b46/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/bc46791c827845c1194664073809b8/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/0bc2206f312bb1045562181adbeb4e/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/22a3a48149c2fd51fd3c046fe10efd/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/fbec77d94ee147291598d51794a200/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/e99e07a7db7f5a946cf7c81f52e451/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/7dfc7cc9aa846ac0174ed4524699a4/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/fff49c2027b6714e185ed91b9101ec/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/1ca2352a48bfc47082de21b9b0ae8a/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/6dee8ef197c3f5b91f24032942c5a8/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/898f4edbc584caebf9d56ac3fb85ac/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/ff507973daaeee84e3da53ab5b6324/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/f78e81307d76b05b0b30d4986a36de/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/9b60f5a01df0cd7379204f97ee784f/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/9892585c6f71fd073df121f37924dd/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/d3d7cc4cc8909a140276db80bb1055/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/70a707774ad1bccefb4413eccf4e65/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/17246d7b5317a623c49c2595a3d9c6/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/f8ec9c81e1ac426f6d7f142e680a03/Filler-D0001215.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/4ba8cc21cfbe13fa298b4d0eb82795/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/c88f4e7cd2b5ae8937efc26a365b46/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/52f915ad0f9c31d259670b5f8581b1/Filler-D0001215.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/2acbf0840174510de3fba77a1b8eeb/Filler-D0001215.bam
==> STAGING COMPLETE (36 inputs)
ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory