Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-targets-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/a24192f5b000d7610b73613e9a8f40/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/b0ef85a84da5c734a943e5c7686a25/Filler-D0000335.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/b0ef85a84da5c734a943e5c7686a25/Filler-D0000335.md.bam.bai
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-probes-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/a24192f5b000d7610b73613e9a8f40/.command.run
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Filler-D0000335.md.bam --algo HsMetricAlgo --targets_list targets/prenatal-exome-v1-targets-hg38.bed --baits_list baits/prenatal-exome-v1-probes-hg38.bed Filler-D0000335_prenatal-exome-v1-targets-hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 6.7s, est remaining 127.3s, peak mem 2384MB, user 152.8s, sys 9.4s, output queue size 160
progress 10% @chr2:68000001, elapsed 10.9s, est remaining 98.5s, peak mem 2833MB, user 305.5s, sys 12.4s, output queue size 94
progress 15% @chr2:215000001, elapsed 15.2s, est remaining 86.3s, peak mem 5146MB, user 428.5s, sys 13.8s, output queue size 203
progress 20% @chr3:175000001, elapsed 20.0s, est remaining 79.9s, peak mem 8357MB, user 569.1s, sys 15.1s, output queue size 364
progress 25% @chr4:120000001, elapsed 23.3s, est remaining 70.0s, peak mem 11103MB, user 673.2s, sys 16.2s, output queue size 525
progress 30% @chr5:98000001, elapsed 26.0s, est remaining 60.8s, peak mem 12783MB, user 749.0s, sys 17.0s, output queue size 686
progress 35% @chr6:92000001, elapsed 30.6s, est remaining 56.8s, peak mem 15951MB, user 866.2s, sys 18.0s, output queue size 848
progress 40% @chr7:21000001, elapsed 34.9s, est remaining 52.4s, peak mem 17760MB, user 984.5s, sys 19.1s, output queue size 1009
progress 45% @chr8:72000001, elapsed 40.3s, est remaining 49.2s, peak mem 19187MB, user 1141.2s, sys 20.9s, output queue size 1171
progress 50% @chr9:88000001, elapsed 43.8s, est remaining 43.8s, peak mem 19703MB, user 1259.8s, sys 22.6s, output queue size 1333
progress 55% @chr10:95000001, elapsed 49.8s, est remaining 40.7s, peak mem 19947MB, user 1424.3s, sys 24.5s, output queue size 1494
progress 60% @chr12:3000001, elapsed 56.5s, est remaining 37.7s, peak mem 20028MB, user 1618.1s, sys 26.0s, output queue size 1656
progress 65% @chr12:109000001, elapsed 62.4s, est remaining 33.6s, peak mem 20028MB, user 1815.6s, sys 42.4s, output queue size 747
progress 70% @chr14:86000001, elapsed 67.8s, est remaining 29.1s, peak mem 20028MB, user 1998.8s, sys 43.4s, output queue size 908
progress 75% @chr16:42000001, elapsed 73.6s, est remaining 24.5s, peak mem 20028MB, user 2203.4s, sys 44.6s, output queue size 43
progress 80% @chr18:3000001, elapsed 85.7s, est remaining 21.4s, peak mem 20411MB, user 2522.6s, sys 46.4s, output queue size 205
progress 85% @chr19:48000001, elapsed 96.6s, est remaining 17.1s, peak mem 20599MB, user 2854.7s, sys 48.6s, output queue size 367
progress 90% @chrX:33000001, elapsed 108.9s, est remaining 12.1s, peak mem 26401MB, user 3192.9s, sys 50.7s, output queue size 529
progress 95% @chrY:22000001, elapsed 113.7s, est remaining 6.0s, peak mem 29047MB, user 3315.9s, sys 51.3s, output queue size 690
progress 100% @chr19:7000001, elapsed 194.7s, est remaining 0.0s, peak mem 39151MB, user 3692.5s, sys 64.9s, output queue size 3822
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 70390076712
reads: 2293496371
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1449.849 user 48.079 sys 1497.518 real
done: 1 calls 0.299 user 0.519 sys 0.826 real
exec_no_coor: 1 calls 0.037 user 0.128 sys 0.183 real
execute: 1 calls 0.006 user 0.002 sys 194.935 real
idle: 2364 calls 0.264 user 0.012 sys 2336.620 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 41053827072 mem 3696.089 user 66.677 sys 198.001 real