Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-targets-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/25095fcf5949834beb588d429fe4dd/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-probes-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/2a6a14f618124df375c455b20fe1ff/Filler-D0001322.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/25095fcf5949834beb588d429fe4dd/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/2a6a14f618124df375c455b20fe1ff/Filler-D0001322.md.bam.bai
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Filler-D0001322.md.bam --algo HsMetricAlgo --targets_list targets/prenatal-exome-v1-targets-hg38.bed --baits_list baits/prenatal-exome-v1-probes-hg38.bed Filler-D0001322_prenatal-exome-v1-targets-hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:159000001, elapsed 5.5s, est remaining 104.5s, peak mem 1865MB, user 137.7s, sys 6.0s, output queue size 52
progress 10% @chr2:89000001, elapsed 9.0s, est remaining 81.4s, peak mem 2117MB, user 258.8s, sys 7.4s, output queue size 47
progress 15% @chr2:201000001, elapsed 12.8s, est remaining 72.5s, peak mem 4150MB, user 362.8s, sys 8.4s, output queue size 203
progress 20% @chr3:176000001, elapsed 17.0s, est remaining 67.8s, peak mem 6798MB, user 470.0s, sys 9.4s, output queue size 364
progress 25% @chr4:120000001, elapsed 19.7s, est remaining 59.1s, peak mem 9155MB, user 573.4s, sys 10.2s, output queue size 525
progress 30% @chr5:98000001, elapsed 22.1s, est remaining 51.5s, peak mem 10626MB, user 640.0s, sys 10.8s, output queue size 687
progress 35% @chr6:70000001, elapsed 26.0s, est remaining 48.4s, peak mem 13286MB, user 737.4s, sys 11.7s, output queue size 848
progress 40% @chr7:64000001, elapsed 29.5s, est remaining 44.3s, peak mem 15611MB, user 841.8s, sys 12.6s, output queue size 1009
progress 45% @chr8:75000001, elapsed 34.1s, est remaining 41.7s, peak mem 19106MB, user 963.7s, sys 13.7s, output queue size 1171
progress 50% @chr9:88000001, elapsed 37.1s, est remaining 37.1s, peak mem 21147MB, user 1052.8s, sys 15.0s, output queue size 1333
progress 55% @chr10:95000001, elapsed 42.1s, est remaining 34.4s, peak mem 22678MB, user 1210.3s, sys 16.9s, output queue size 1494
progress 60% @chr11:126000001, elapsed 47.6s, est remaining 31.7s, peak mem 23582MB, user 1368.0s, sys 18.1s, output queue size 1656
progress 65% @chr13:34000001, elapsed 52.6s, est remaining 28.3s, peak mem 23711MB, user 1502.5s, sys 18.9s, output queue size 1818
progress 70% @chr14:79000001, elapsed 57.2s, est remaining 24.5s, peak mem 23711MB, user 1655.1s, sys 19.8s, output queue size 1979
progress 75% @chr16:42000001, elapsed 62.4s, est remaining 20.8s, peak mem 23711MB, user 1835.6s, sys 32.1s, output queue size 1070
progress 80% @chr18:21000001, elapsed 73.0s, est remaining 18.2s, peak mem 24148MB, user 2141.9s, sys 34.5s, output queue size 205
progress 85% @chr19:57000001, elapsed 82.1s, est remaining 14.5s, peak mem 24483MB, user 2429.7s, sys 36.7s, output queue size 367
progress 90% @chrX:36000001, elapsed 92.8s, est remaining 10.3s, peak mem 30458MB, user 2724.6s, sys 38.6s, output queue size 529
progress 95% @chrY:53000001, elapsed 97.1s, est remaining 5.1s, peak mem 31022MB, user 2840.8s, sys 39.5s, output queue size 690
progress 100% @chr19:7000001, elapsed 162.3s, est remaining 0.0s, peak mem 36533MB, user 3176.5s, sys 50.6s, output queue size 3822
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 60865574597
reads: 2043529569
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1288.060 user 41.146 sys 1329.473 real
done: 1 calls 0.328 user 0.937 sys 1.273 real
exec_no_coor: 1 calls 0.058 user 0.088 sys 0.153 real
execute: 1 calls 0.005 user 0.002 sys 162.579 real
idle: 1911 calls 0.219 user 0.015 sys 1878.073 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 38307930112 mem 3179.609 user 52.865 sys 166.037 real