File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/bf57b9b68e87fa73b84e02d76a476e/.command.log
Size
1.2 KB
Task
DAQ:BAM_POSTDEDUP_QC:MOSDEPTH (Filler-D0001104)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/bf57b9b68e87fa73b84e02d76a476e/.command.sh
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-targets-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/bf57b9b68e87fa73b84e02d76a476e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/f703491df633fe8b6b36376cd09f11/Filler-D0001104.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/f703491df633fe8b6b36376cd09f11/Filler-D0001104.md.bam.bai
==> STAGING COMPLETE (6 inputs)

[W::hts_idx_load3] The index file is older than the data file: Filler-D0001104.md.bam.bai
ls: cannot access '*.per-base.d4': No such file or directory
ls: cannot access '*.quantized.bed.gz': No such file or directory
ls: cannot access '*.quantized.bed.gz.csi': No such file or directory
ls: cannot access '*.thresholds.bed.gz': No such file or directory
ls: cannot access '*.thresholds.bed.gz.csi': No such file or directory