Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-targets-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/6fe5e6a22ac1e9d7109c2c8435b740/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/5099739d24974f633385217252d395/Filler-D0000861.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-probes-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/5099739d24974f633385217252d395/Filler-D0000861.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/6fe5e6a22ac1e9d7109c2c8435b740/.command.run
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Filler-D0000861.md.bam --algo HsMetricAlgo --targets_list targets/prenatal-exome-v1-targets-hg38.bed --baits_list baits/prenatal-exome-v1-probes-hg38.bed Filler-D0000861_prenatal-exome-v1-targets-hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:184000001, elapsed 2.9s, est remaining 54.8s, peak mem 1017MB, user 67.6s, sys 2.5s, output queue size 160
progress 10% @chr2:68000001, elapsed 4.8s, est remaining 43.5s, peak mem 1171MB, user 136.1s, sys 3.3s, output queue size 94
progress 15% @chr3:18000001, elapsed 6.8s, est remaining 38.7s, peak mem 2339MB, user 189.6s, sys 3.9s, output queue size 208
progress 20% @chr3:161000001, elapsed 9.0s, est remaining 36.0s, peak mem 3802MB, user 254.6s, sys 4.5s, output queue size 364
progress 25% @chr4:120000001, elapsed 10.5s, est remaining 31.6s, peak mem 4986MB, user 305.7s, sys 5.2s, output queue size 525
progress 30% @chr5:98000001, elapsed 11.8s, est remaining 27.5s, peak mem 5824MB, user 340.1s, sys 5.6s, output queue size 686
progress 35% @chr6:94000001, elapsed 13.9s, est remaining 25.8s, peak mem 7169MB, user 391.4s, sys 6.4s, output queue size 848
progress 40% @chr7:64000001, elapsed 15.8s, est remaining 23.7s, peak mem 7846MB, user 448.2s, sys 6.9s, output queue size 1009
progress 45% @chr8:78000001, elapsed 18.2s, est remaining 22.2s, peak mem 8442MB, user 514.3s, sys 7.9s, output queue size 1171
progress 50% @chr9:84000001, elapsed 19.7s, est remaining 19.7s, peak mem 8476MB, user 567.3s, sys 8.7s, output queue size 1333
progress 55% @chr10:98000001, elapsed 22.3s, est remaining 18.3s, peak mem 8665MB, user 651.8s, sys 13.0s, output queue size 423
progress 60% @chr11:130000001, elapsed 25.2s, est remaining 16.8s, peak mem 8665MB, user 737.0s, sys 13.6s, output queue size 585
progress 65% @chr13:34000001, elapsed 27.7s, est remaining 14.9s, peak mem 8665MB, user 810.1s, sys 14.2s, output queue size 747
progress 70% @chr14:68000001, elapsed 30.0s, est remaining 12.9s, peak mem 8665MB, user 890.6s, sys 14.8s, output queue size 908
progress 75% @chr16:41000001, elapsed 32.8s, est remaining 10.9s, peak mem 8800MB, user 963.8s, sys 15.1s, output queue size 1070
progress 80% @chr18:7000001, elapsed 38.0s, est remaining 9.5s, peak mem 9095MB, user 1119.9s, sys 16.0s, output queue size 205
progress 85% @chr19:50000001, elapsed 43.3s, est remaining 7.6s, peak mem 9300MB, user 1276.2s, sys 16.9s, output queue size 367
progress 90% @chr22:46000001, elapsed 49.1s, est remaining 5.5s, peak mem 12570MB, user 1444.7s, sys 17.9s, output queue size 529
progress 95% @chrY:51000001, elapsed 51.4s, est remaining 2.7s, peak mem 13803MB, user 1493.9s, sys 18.3s, output queue size 690
progress 100% @chr19:7000001, elapsed 107.9s, est remaining 0.0s, peak mem 19311MB, user 1710.2s, sys 33.5s, output queue size 3822
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 32778594227
reads: 1040825179
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 676.451 user 24.241 sys 702.004 real
done: 1 calls 0.445 user 0.050 sys 0.503 real
exec_no_coor: 1 calls 0.024 user 0.037 sys 0.096 real
execute: 1 calls 0.001 user 0.001 sys 108.064 real
idle: 1681 calls 0.173 user 0.002 sys 1647.585 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 20250025984 mem 1713.450 user 34.740 sys 110.843 real