Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-targets-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/3184b36fdd462b62ee0bfcb2d56fd7/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/projects/lcvs/bed-files/prenatal-exome-v1-probes-hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/64df86be051ec55661683ea85b405b/Filler-D0002530.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/64df86be051ec55661683ea85b405b/Filler-D0002530.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/3184b36fdd462b62ee0bfcb2d56fd7/.command.run
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Filler-D0002530.md.bam --algo HsMetricAlgo --targets_list targets/prenatal-exome-v1-targets-hg38.bed --baits_list baits/prenatal-exome-v1-probes-hg38.bed Filler-D0002530_prenatal-exome-v1-targets-hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:175000001, elapsed 6.8s, est remaining 128.8s, peak mem 2220MB, user 163.6s, sys 7.1s, output queue size 160
progress 10% @chr2:68000001, elapsed 11.1s, est remaining 100.2s, peak mem 2686MB, user 314.2s, sys 9.1s, output queue size 94
progress 15% @chr3:21000001, elapsed 15.7s, est remaining 88.9s, peak mem 5478MB, user 441.2s, sys 10.3s, output queue size 203
progress 20% @chr3:150000001, elapsed 20.8s, est remaining 83.3s, peak mem 9046MB, user 587.5s, sys 11.7s, output queue size 364
progress 25% @chr4:76000001, elapsed 24.3s, est remaining 73.0s, peak mem 12229MB, user 708.6s, sys 12.9s, output queue size 525
progress 30% @chr5:83000001, elapsed 27.3s, est remaining 63.6s, peak mem 14044MB, user 787.9s, sys 13.7s, output queue size 686
progress 35% @chr6:92000001, elapsed 32.0s, est remaining 59.5s, peak mem 17396MB, user 910.3s, sys 14.8s, output queue size 848
progress 40% @chr7:50000001, elapsed 36.5s, est remaining 54.7s, peak mem 18662MB, user 1022.8s, sys 15.6s, output queue size 1009
progress 45% @chr8:75000001, elapsed 42.0s, est remaining 51.4s, peak mem 19581MB, user 1187.1s, sys 17.2s, output queue size 1171
progress 50% @chr9:88000001, elapsed 45.7s, est remaining 45.7s, peak mem 19806MB, user 1294.8s, sys 18.2s, output queue size 1333
progress 55% @chr10:120000001, elapsed 52.0s, est remaining 42.6s, peak mem 19992MB, user 1483.3s, sys 26.4s, output queue size 1075
progress 60% @chr11:113000001, elapsed 58.9s, est remaining 39.3s, peak mem 19992MB, user 1731.4s, sys 28.4s, output queue size 585
progress 65% @chr13:25000001, elapsed 65.1s, est remaining 35.1s, peak mem 19992MB, user 1912.0s, sys 29.6s, output queue size 747
progress 70% @chr14:86000001, elapsed 70.6s, est remaining 30.3s, peak mem 19992MB, user 2100.0s, sys 30.9s, output queue size 908
progress 75% @chr16:42000001, elapsed 76.9s, est remaining 25.6s, peak mem 20219MB, user 2273.0s, sys 32.5s, output queue size 1070
progress 80% @chr17:7000001, elapsed 89.9s, est remaining 22.5s, peak mem 20615MB, user 2659.3s, sys 35.1s, output queue size 205
progress 85% @chr20:42000001, elapsed 101.4s, est remaining 17.9s, peak mem 20724MB, user 3006.9s, sys 37.7s, output queue size 367
progress 90% @chrX:36000001, elapsed 114.0s, est remaining 12.7s, peak mem 26205MB, user 3370.4s, sys 39.9s, output queue size 529
progress 95% @chrY:26000001, elapsed 119.2s, est remaining 6.3s, peak mem 26547MB, user 3483.1s, sys 40.6s, output queue size 690
progress 100% @chr19:7000001, elapsed 175.4s, est remaining 0.0s, peak mem 30633MB, user 3841.0s, sys 50.6s, output queue size 3822
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 69795256432
reads: 2316919699
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1472.970 user 44.349 sys 1516.911 real
done: 1 calls 0.355 user 0.058 sys 0.421 real
exec_no_coor: 1 calls 0.038 user 0.123 sys 0.182 real
execute: 1 calls 0.002 user 0.002 sys 175.544 real
idle: 1624 calls 0.219 user 0.010 sys 1588.604 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 32121925632 mem 3843.967 user 51.966 sys 178.334 real