Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/704a2047a204462bc07e3dd43e3401/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/2f1b26240261f9515db6009b62cc57/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/688239f13a4a5d72798cc3667c77a7/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/067c01733e81eabdaff12fc144e5cf/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/69b4e68db5a2bdea4e827ab08f4565/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/df0d0fd79ae110d3de35537ad57c30/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/5893f436df4c9789ee5e671513f27c/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/955f4396f15bc701ac793bee61c239/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/66cfe1247fc1fce65340e437b1d903/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/d873e7131b085603fb2640550bbe7d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/f20dc9b644a6122441e0a183aaeea1/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/f1f34ba42386043887bb607e3a30d8/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/e777ae20376180fcb1a66010228d0b/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/db5b0bef7874a7bb5aeaa457d93b03/Filler-D0000539.bam
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Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/f689de17bab3efba0ceb250a0dbd66/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/f97f302605cf03f881abcae8f21923/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/5b379cd00f1783020ec4b927a511f6/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/924414214eb42d8ba62effd41bed7e/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/5c5c2443ac910b2589107c41867db9/Filler-D0000539.bam
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Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/57c7525314a8acd7e01bc9553a11ce/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/7b7fd96921f8816dd4c9f5050bf2d3/Filler-D0000539.bam
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Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/fd6cac98b3c56dc7dd10883ecaa020/Filler-D0000539.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/eff55214d5d7d96e152a2af8e67334/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/1dddfa523c235ddc03884da3d30802/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/d873e7131b085603fb2640550bbe7d/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/ba7d0645ad7bba73e8056f5134a412/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/a7cdf7ece1c3b824c1e3a9fa8b3932/Filler-D0000539.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/55187af56569c3579d0c952630f589/Filler-D0000539.bam
==> STAGING COMPLETE (36 inputs)
ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory