#!/bin/bash -Ceuo pipefail
mosdepth \
    --threads 4 \
    --by prenatal-exome-v1-targets-hg38.bed \
    --fasta Homo_sapiens_assembly38.fasta \
     \
    Filler-D0001009 \
    Filler-D0001009.md.bam

cat <<-END_VERSIONS > versions.yml
"DAQ:BAM_POSTDEDUP_QC:MOSDEPTH":
    mosdepth: $(mosdepth --version 2>&1 | sed 's/^.*mosdepth //; s/ .*$//')
END_VERSIONS