|
succeeded
|
NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet)
|
4s |
3s |
0s |
0s |
0 bytes |
66% |
84.5 KB |
199 bytes |
0 bytes |
0 bytes |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation)
|
5s |
3s |
0s |
1s |
0 bytes |
69% |
114.2 KB |
469 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (PatientA_normal)
|
16s |
6s |
0s |
9s |
5.3 MB |
101% |
172.3 KB |
756 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (PatientB_normal)
|
17s |
8s |
0s |
8s |
5.6 MB |
123% |
172.3 KB |
757 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (PatientC_normal)
|
16s |
7s |
0s |
8s |
5.7 MB |
113% |
172.3 KB |
757 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (PatientA_normal)
|
53s |
16s |
0s |
36s |
3.5 MB |
104% |
158.8 KB |
741 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (PatientB_normal)
|
1m 21s |
54s |
0s |
26s |
3.6 MB |
120% |
158.8 KB |
745 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (PatientC_normal)
|
1m 13s |
48s |
0s |
24s |
3.6 MB |
117% |
159.6 KB |
743 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (PatientA_normal;tnseq)
|
4s |
2s |
- |
- |
4.6 MB |
2589% |
102.0 KB |
659 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (PatientB_normal;tnseq)
|
4s |
2s |
- |
- |
3.2 MB |
2081% |
102.0 KB |
658 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (PatientA_normal)
|
1m 27s |
1m 15s |
0s |
11s |
3.7 MB |
2095% |
112.0 KB |
708 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (PatientB_normal)
|
45s |
36s |
0s |
8s |
5.4 MB |
2123% |
111.8 KB |
707 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (PatientC_normal)
|
13s |
3s |
0s |
9s |
5.4 MB |
2641% |
136.0 KB |
704 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (PatientA_normal)
|
7s |
5s |
- |
- |
3.2 MB |
242% |
99.1 KB |
692 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (PatientB_normal)
|
37s |
36s |
- |
- |
3.2 MB |
146% |
99.7 KB |
695 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (PatientC_normal)
|
7s |
5s |
- |
- |
3.2 MB |
1443% |
106.8 KB |
703 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon)
|
13s |
3s |
0s |
9s |
5.5 MB |
2808% |
128.0 KB |
703 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon)
|
16s |
15s |
- |
- |
5.0 MB |
3539% |
121.7 KB |
701 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (PatientA_normal)
|
16s |
3s |
0s |
12s |
3.7 MB |
238% |
105.7 KB |
686 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (PatientB_normal)
|
16s |
4s |
0s |
11s |
3.5 MB |
379% |
105.7 KB |
688 bytes |
0 bytes |
8.0 KB |
1 |