20260213_LH00166_0247_B23LGTJLT4 DAQ-UMI Report

Report summarizing key metrics from DAQ-UMI pipeline

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Report generated on 2026-02-20, 09:28 UTC based on data in: /tmp/nxf.trEqkpX1L2

General Statistics

Note: Fastp columns represent a single lane; umi-tools columns derived from chr1 only

Showing ³²/₃₂ rows and ¹⁹/₃₀ columns.

Sample Name	Mean Cov.	Min Cov.	Max Cov.	Mb Total Coverage Bases	Genome length	Fold Enrichment	Median Target Coverage	Target Bases ≥ 30X	Insert Size	Mean Insert Size	Error rate	Non-primary	Reads mapped	% Mapped	% Proper pairs	% MapQ 0 reads	Total seqs	Mean insert	% Dups	M Unique Reads	% Pass Dedup	% Duplication	% > Q30	Mb Q30 bases	Reads After Filtering	GC content	% PF	% Adapter	Mean R1 Length	Mean R2 Length
Filler-D0000276	198.6X	0.0X	35923.0X	6782.1Mb	34156490	39X	156.0X	98%	182bp	221bp	1.00%	0.0M	147.1M	100.0%	97.0%	14.6%	147.1M	251.8bp	92%	7.5M	8.8%	21.0%	96.6%	28878.2Mb	210.5M	53.2%	98.6%	7.8%	150.0bp	150.0bp
Filler-D0000330	274.5X	0.0X	85837.0X	9374.7Mb	34156490	40X	194.0X	98%	179bp	209bp	1.02%	0.0M	195.9M	100.0%	96.9%	17.8%	195.9M	243.9bp	94%	9.8M	6.7%	24.4%	96.7%	49969.9Mb	362.9M	53.6%	99.1%	6.2%	150.0bp	150.0bp
Filler-D0000393	280.0X	0.0X	70942.0X	9562.4Mb	34156490	41X	205.0X	98%	182bp	216bp	0.96%	0.0M	195.9M	100.0%	97.7%	15.1%	195.9M	243.2bp	91%	9.8M	9.9%	14.0%	96.4%	33365.8Mb	242.5M	53.5%	98.1%	5.2%	150.0bp	150.0bp
Filler-D0000445	319.4X	0.0X	92285.0X	10909.9Mb	34156490	41X	227.0X	98%	183bp	222bp	0.99%	0.0M	219.8M	100.0%	97.7%	15.8%	219.8M	248.8bp	93%	11.1M	8.0%	25.2%	96.7%	47311.6Mb	342.4M	53.6%	99.2%	4.8%	150.0bp	150.0bp
Filler-D0000613	292.0X	0.0X	45471.0X	9973.7Mb	34156490	40X	213.0X	98%	186bp	233bp	0.97%	0.0M	201.6M	100.0%	97.1%	13.9%	201.6M	260.4bp	92%	10.4M	9.6%	19.4%	96.3%	36638.8Mb	266.3M	54.0%	99.0%	4.8%	150.0bp	150.0bp
Filler-D0000617	254.4X	0.0X	65374.0X	8689.8Mb	34156490	40X	186.0X	98%	181bp	220bp	1.00%	0.0M	182.0M	100.0%	96.8%	15.8%	182.0M	250.3bp	92%	9.2M	8.7%	24.4%	96.4%	35979.7Mb	263.0M	53.6%	98.9%	7.9%	150.0bp	150.0bp
Filler-D0000692	216.1X	0.0X	41659.0X	7382.2Mb	34156490	38X	164.0X	98%	198bp	284bp	1.01%	0.0M	155.3M	100.0%	96.0%	13.9%	155.3M	299.5bp	92%	8.0M	9.4%	17.8%	95.7%	28566.9Mb	209.8M	53.4%	98.6%	6.9%	150.0bp	150.0bp
Filler-D0000821	287.8X	0.0X	45654.0X	9828.8Mb	34156490	40X	209.0X	98%	188bp	238bp	1.00%	0.0M	199.0M	100.0%	97.1%	14.9%	199.0M	264.6bp	93%	10.2M	8.0%	22.4%	96.5%	43578.0Mb	315.6M	53.5%	99.0%	4.0%	150.0bp	150.0bp
Filler-D0000939	225.5X	0.0X	44087.0X	7702.7Mb	34156490	38X	170.0X	98%	194bp	261bp	1.01%	0.0M	160.8M	100.0%	96.3%	14.8%	160.8M	283.1bp	94%	8.2M	6.9%	20.9%	96.0%	39935.7Mb	291.7M	53.5%	98.7%	5.8%	150.0bp	150.0bp
Filler-D0000941	253.2X	0.0X	47890.0X	8648.8Mb	34156490	41X	188.0X	98%	177bp	206bp	1.00%	0.0M	181.0M	100.0%	97.0%	14.2%	181.0M	238.3bp	91%	9.1M	10.4%	21.2%	96.6%	30272.8Mb	220.3M	54.1%	98.9%	7.7%	150.0bp	150.0bp
Filler-D0000950	249.1X	0.0X	27224.0X	8507.4Mb	34156490	40X	187.0X	98%	179bp	211bp	0.99%	0.0M	180.4M	100.0%	97.4%	15.1%	180.4M	237.1bp	93%	9.2M	7.6%	21.9%	96.8%	41456.2Mb	301.0M	53.6%	99.0%	7.3%	150.0bp	150.0bp
Filler-D0000977	213.8X	0.0X	23415.0X	7303.3Mb	34156490	40X	166.0X	98%	181bp	217bp	0.99%	0.0M	155.0M	100.0%	96.8%	13.8%	155.0M	253.4bp	91%	8.0M	10.0%	21.7%	96.5%	27393.2Mb	199.0M	53.0%	98.8%	5.8%	150.0bp	150.0bp
Filler-D0001395	247.6X	0.0X	61874.0X	8458.4Mb	34156490	41X	184.0X	98%	180bp	209bp	0.98%	0.0M	176.6M	100.0%	97.8%	15.5%	176.6M	234.1bp	92%	9.0M	9.7%	14.8%	96.5%	30795.6Mb	224.1M	53.7%	98.0%	6.2%	150.0bp	150.0bp
Filler-D0001496	288.5X	0.0X	57305.0X	9854.0Mb	34156490	42X	205.0X	98%	174bp	197bp	0.99%	0.0M	206.2M	100.0%	97.5%	15.3%	206.2M	222.9bp	92%	10.3M	9.1%	23.1%	96.9%	38811.0Mb	282.1M	55.1%	99.1%	8.3%	150.0bp	150.0bp
Filler-D0001590	264.9X	0.0X	60321.0X	9048.1Mb	34156490	40X	196.0X	98%	178bp	210bp	1.00%	0.0M	190.4M	100.0%	97.4%	15.8%	190.4M	239.9bp	93%	9.7M	8.1%	23.0%	96.7%	40395.2Mb	293.7M	53.4%	99.0%	7.6%	150.0bp	150.0bp
Filler-D0001618	202.3X	0.0X	30514.0X	6911.2Mb	34156490	39X	154.0X	98%	183bp	227bp	1.03%	0.0M	147.5M	100.0%	96.7%	15.1%	147.5M	256.8bp	94%	7.5M	7.5%	23.7%	96.5%	33898.0Mb	247.2M	53.6%	98.7%	7.9%	150.0bp	150.0bp
Filler-D0001802	237.3X	0.0X	41449.0X	8106.2Mb	34156490	39X	182.0X	98%	183bp	219bp	1.00%	0.0M	172.8M	100.0%	97.2%	14.8%	172.8M	252.5bp	93%	8.7M	7.8%	21.0%	96.3%	37709.6Mb	274.8M	53.7%	98.9%	6.1%	150.0bp	150.0bp
Filler-D0001839	194.8X	0.0X	29465.0X	6654.8Mb	34156490	35X	150.0X	98%	297bp	347bp	1.07%	0.0M	144.3M	100.0%	94.6%	13.7%	144.3M	426.1bp	92%	7.6M	9.2%	18.7%	95.2%	27301.0Mb	202.3M	53.8%	98.2%	8.3%	150.0bp	150.0bp
Filler-D0001886	184.7X	0.0X	32143.0X	6310.1Mb	34156490	37X	147.0X	98%	199bp	273bp	1.03%	0.0M	135.6M	100.0%	96.4%	14.0%	135.6M	284.1bp	93%	6.9M	8.6%	21.6%	96.1%	27653.6Mb	201.9M	53.3%	98.4%	6.0%	150.0bp	150.0bp
Filler-D0001900	299.8X	0.0X	58496.0X	10240.0Mb	34156490	40X	216.0X	98%	193bp	254bp	0.97%	0.0M	203.2M	100.0%	96.9%	14.1%	203.2M	277.2bp	92%	10.3M	9.4%	18.2%	96.1%	37427.5Mb	272.6M	54.1%	99.0%	4.3%	150.0bp	150.0bp
Filler-D0001907	317.6X	0.0X	84553.0X	10849.4Mb	34156490	40X	229.0X	98%	182bp	217bp	0.96%	0.0M	219.7M	100.0%	97.2%	16.2%	219.7M	250.8bp	92%	10.9M	8.9%	21.5%	96.4%	42388.6Mb	307.4M	52.9%	99.1%	4.2%	150.0bp	150.0bp
Filler-D0001916	251.0X	0.0X	63254.0X	8574.1Mb	34156490	39X	186.0X	98%	192bp	254bp	0.98%	0.0M	174.6M	100.0%	96.5%	14.6%	174.6M	281.5bp	91%	8.9M	10.3%	21.9%	96.2%	29409.9Mb	213.9M	53.5%	98.9%	4.7%	150.0bp	150.0bp
Filler-D0001938	277.8X	0.0X	49774.0X	9486.9Mb	34156490	41X	203.0X	98%	181bp	217bp	0.98%	0.0M	193.8M	100.0%	97.2%	14.4%	193.8M	250.0bp	93%	9.9M	8.2%	20.8%	96.5%	40599.7Mb	294.7M	54.0%	99.0%	5.3%	150.0bp	150.0bp
Filler-D0001949	246.9X	0.0X	37419.0X	8432.7Mb	34156490	39X	184.0X	98%	185bp	227bp	1.02%	0.0M	177.5M	100.0%	96.9%	15.4%	177.5M	258.0bp	94%	9.1M	7.4%	21.3%	96.3%	41329.5Mb	301.8M	53.6%	98.8%	6.4%	150.0bp	150.0bp
Filler-D0002088	259.3X	0.0X	46456.0X	8858.0Mb	34156490	40X	192.0X	98%	182bp	221bp	0.99%	0.0M	183.5M	100.0%	97.2%	15.4%	183.5M	250.4bp	92%	9.3M	8.6%	19.9%	96.6%	37039.7Mb	268.9M	53.2%	98.9%	6.3%	150.0bp	150.0bp
Filler-D0002301	211.4X	0.0X	40492.0X	7219.2Mb	34156490	39X	163.0X	98%	184bp	229bp	1.01%	0.0M	154.4M	100.0%	96.9%	14.7%	154.4M	260.5bp	92%	7.8M	9.6%	19.1%	96.4%	27621.5Mb	201.4M	53.6%	98.8%	6.9%	150.0bp	150.0bp
Filler-D0002372	291.3X	0.0X	43442.0X	9950.6Mb	34156490	40X	206.0X	98%	186bp	235bp	0.99%	0.0M	201.2M	100.0%	96.9%	16.6%	201.2M	264.1bp	93%	9.9M	7.9%	22.6%	96.5%	43772.9Mb	317.5M	53.8%	99.0%	5.4%	150.0bp	150.0bp
Filler-D0002488	234.1X	0.0X	29195.0X	7995.4Mb	34156490	39X	179.0X	98%	183bp	230bp	1.01%	0.0M	168.7M	100.0%	96.9%	13.7%	168.7M	260.0bp	91%	8.6M	9.9%	19.5%	96.4%	29971.8Mb	218.5M	53.5%	98.9%	6.7%	150.0bp	150.0bp
Filler-D0002617	272.8X	0.0X	71653.0X	9316.8Mb	34156490	38X	201.0X	98%	202bp	278bp	0.99%	0.0M	187.3M	100.0%	96.8%	14.5%	187.3M	286.3bp	92%	9.5M	9.1%	24.6%	96.0%	35730.1Mb	260.4M	53.6%	98.8%	4.2%	150.0bp	150.0bp
Filler-D0002650	319.8X	0.0X	41443.0X	10924.1Mb	34156490	41X	232.0X	98%	184bp	225bp	0.95%	0.0M	218.3M	100.0%	97.4%	13.6%	218.3M	254.5bp	91%	11.2M	9.6%	18.8%	96.7%	39794.6Mb	287.6M	54.1%	99.1%	4.0%	150.0bp	150.0bp
Filler-D0002674	260.0X	0.0X	56287.0X	8880.3Mb	34156490	38X	194.0X	98%	195bp	262bp	1.01%	0.0M	183.6M	100.0%	96.6%	15.2%	183.6M	279.8bp	94%	9.4M	6.7%	23.7%	96.4%	48029.1Mb	349.1M	53.3%	98.8%	5.3%	150.0bp	150.0bp
Filler-D0002767	196.7X	0.0X	36662.0X	6717.5Mb	34156490	40X	156.0X	98%	177bp	202bp	0.98%	0.0M	146.4M	100.0%	97.9%	14.1%	146.4M	226.6bp	91%	7.5M	10.4%	17.7%	96.9%	24384.0Mb	176.5M	53.3%	98.8%	6.4%	150.0bp	150.0bp

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: general_stats_table_table

Sort	Group	Column	Description	ID	Scale
\|\|	Mosdepth	Mean Cov.	Mean coverage	`mosdepth-mean_coverage`
\|\|	Mosdepth	Min Cov.	Minimum coverage	`mosdepth-min_coverage`
\|\|	Mosdepth	Max Cov.	Maximum coverage	`mosdepth-max_coverage`
\|\|	Mosdepth	Mb Total Coverage Bases	Total coverage of bases (millions)	`mosdepth-coverage_bases`	base_count
\|\|	Mosdepth	Genome length	Total length of the genome	`mosdepth-length`
\|\|	Picard: HsMetrics	Fold Enrichment	Fold Enrichment	`picard_hsmetrics-FOLD_ENRICHMENT`
\|\|	Picard: HsMetrics	Median Target Coverage	The median coverage of reads that mapped to target regions of an experiment.	`picard_hsmetrics-MEDIAN_TARGET_COVERAGE`
\|\|	Picard: HsMetrics	Target Bases ≥ 30X	Percent of target bases with coverage ≥ 30X	`picard_hsmetrics-picard_target_bases_30X`
\|\|	Picard: InsertSizeMetrics	Insert Size	Median Insert Size, all read orientations (bp)	`picard_insertsizemetrics-summed_median`
\|\|	Picard: InsertSizeMetrics	Mean Insert Size	Mean Insert Size, all read orientations (bp)	`picard_insertsizemetrics-summed_mean`
\|\|	Samtools: stats	Error rate	Error rate: mismatches (NM) / bases mapped (CIGAR)	`samtools_stats-error_rate`
\|\|	Samtools: stats	Non-primary	Non-primary alignments (millions)	`samtools_stats-non_primary_alignments`	read_count
\|\|	Samtools: stats	Reads mapped	Reads mapped in the bam file (millions)	`samtools_stats-reads_mapped`	read_count
\|\|	Samtools: stats	% Mapped	% Mapped reads	`samtools_stats-reads_mapped_percent`
\|\|	Samtools: stats	% Proper pairs	% Properly paired reads	`samtools_stats-reads_properly_paired_percent`
\|\|	Samtools: stats	% MapQ 0 reads	% of reads that are ambiguously placed (MapQ=0)	`samtools_stats-reads_MQ0_percent`
\|\|	Samtools: stats	Total seqs	Total sequences in the bam file (millions)	`samtools_stats-raw_total_sequences`	read_count
\|\|	Samtools: stats	Mean insert	Average insert size	`samtools_stats-insert_size_average`
\|\|	Sambamba: markdup	% Dups	Rate of Duplication per Sample	`sambamba_markdup-duplicate_rate`
\|\|	UMI-tools	M Unique Reads	Reads remaining after deduplication (millions)	`umi_tools-dedup_output_reads`	read_count
\|\|	UMI-tools	% Pass Dedup	% processed reads that passed deduplication	`umi_tools-dedup_percent_passing`
\|\|	fastp	% Duplication	Duplication rate before filtering	`fastp-pct_duplication`
\|\|	fastp	% > Q30	Percentage of reads > Q30 after filtering	`fastp-after_filtering_q30_rate`
\|\|	fastp	Mb Q30 bases	Bases > Q30 after filtering (millions)	`fastp-after_filtering_q30_bases`	base_count
\|\|	fastp	Reads After Filtering	Total reads after filtering (millions)	`fastp-filtering_result_passed_filter_reads`	read_count
\|\|	fastp	GC content	GC content after filtering	`fastp-after_filtering_gc_content`
\|\|	fastp	% PF	Percent reads passing filter	`fastp-pct_surviving`
\|\|	fastp	% Adapter	Percentage adapter-trimmed reads	`fastp-pct_adapter`
\|\|	fastp	Mean R1 Length	Mean read length of R1	`fastp-before_filtering_read1_mean_length`
\|\|	fastp	Mean R2 Length	Mean read length of R2	`fastp-before_filtering_read2_mean_length`

Seqtool

Seqtool performs qc analyses on sequencing alignments.

Basic Stats

Full summary statistics from seqtool output.

Showing ³²/₃₂ rows and ⁷⁰/₇₀ columns.

Sample Name	reads	unique_reads	pairs	proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frac_proper_pairs	frac_bases_gt30x	frac_bases_gt100x	frag_size_q20	frag_size_median	frag_size_q80	frag_size_mean	frag_size_std	n_q20	n_q25	n_q30	n_bases	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	gc_0.0	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_1.0	bed	saturation_at_1000000_reads	roi_size	contam	n_sites	loglik	lrt	bed_base_count
Filler-D0000276_full_basic_stats	147124299.0	147124299.0	74805990.0	71325992.0	54165577.0	17160415.0	97755482.0	49368817.0	0.7	0.3	0.8	0.2	1.0	1.0	0.7	161.0	185.0	344.0	249.5	108.2	1.0	0.9	0.9	20738928390.0	180.9	0.4	33877.0	32.0	51.0	148.0	342.0	685.0	0.3	1.0	33680165.0	24640673.0	0.1	1.1	0.3	0.9	1.0	1.1	1.2	1.2	1.1	1.0	1.0	0.9	0.8	0.8	0.9	0.8	0.4	0.4	0.3	IDT.Exomev2.targets.hg38.bed	950974.0	33951579.0	0.1	5548.0	-35899.1	13969.5	34156137.0
Filler-D0000330_full_basic_stats	195947694.0	195947694.0	99611972.0	94875223.0	72881464.0	21993759.0	133974058.0	61973636.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	163.0	183.0	335.0	242.5	100.5	1.0	0.9	0.9	27711365240.0	250.4	0.5	65533.0	37.0	60.0	187.0	503.0	1041.0	0.2	1.0	33778076.0	27345854.0	0.1	1.2	0.3	0.9	1.0	1.1	1.2	1.2	1.1	1.0	1.0	0.9	0.8	0.8	0.9	0.8	0.4	0.4	0.3	IDT.Exomev2.targets.hg38.bed	952674.0	33951579.0	0.1	5688.0	-43524.4	15008.7	34156137.0
Filler-D0000393_full_basic_stats	195903023.0	195903023.0	99316567.0	95641798.0	74393145.0	21248653.0	135855457.0	60047566.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	164.0	185.0	338.0	244.0	97.6	1.0	1.0	1.0	27803712135.0	255.4	0.5	65504.0	38.0	62.0	196.0	530.0	1052.0	0.2	1.0	33765147.0	27867659.0	0.1	1.1	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	1.0	0.9	0.5	0.5	0.4	IDT.Exomev2.targets.hg38.bed	964466.0	33951579.0	0.0	5733.0	-43748.7	14353.0	34156137.0
Filler-D0000445_full_basic_stats	219828443.0	219828443.0	111443663.0	107309246.0	83985805.0	23323441.0	152729949.0	67098494.0	0.7	0.3	0.8	0.2	1.0	1.0	0.9	165.0	187.0	345.0	249.9	100.9	1.0	0.9	0.9	31301326945.0	288.8	0.5	65510.0	41.0	67.0	216.0	609.0	1231.0	0.1	1.0	33811495.0	28920989.0	0.1	1.0	0.4	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	1.0	0.9	0.5	0.5	0.4	IDT.Exomev2.targets.hg38.bed	964942.0	33951579.0	0.0	5447.0	-48065.1	16512.9	34156137.0
Filler-D0000613_full_basic_stats	201577879.0	201577879.0	102603434.0	97837871.0	76963477.0	20874394.0	138656298.0	62921581.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	166.0	189.0	351.0	259.9	110.1	1.0	0.9	0.9	28656398421.0	263.1	0.5	41649.0	38.0	61.0	202.0	572.0	1097.0	0.2	1.0	33789016.0	27847063.0	0.1	1.0	0.3	0.8	0.9	1.0	1.1	1.1	1.1	1.0	1.0	0.9	0.9	0.9	1.0	0.9	0.5	0.5	0.4	IDT.Exomev2.targets.hg38.bed	965686.0	33951579.0	0.0	5671.0	-46032.8	15296.0	34156137.0
Filler-D0000617_full_basic_stats	182038111.0	182038111.0	92696747.0	88079656.0	68030530.0	20049126.0	123865885.0	58172226.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	161.0	184.0	343.0	248.9	107.9	1.0	0.9	0.9	25640343293.0	231.8	0.5	61583.0	36.0	58.0	178.0	467.0	945.0	0.2	1.0	33767619.0	26767179.0	0.1	1.1	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	0.9	0.8	0.5	0.4	0.4	IDT.Exomev2.targets.hg38.bed	955852.0	33951579.0	0.1	5850.0	-54230.5	23652.6	34156137.0
Filler-D0000692_full_basic_stats	155346790.0	155346790.0	79940370.0	74507960.0	58260068.0	16247892.0	101030671.0	54316119.0	0.7	0.3	0.8	0.2	0.9	1.0	0.7	165.0	200.0	410.0	298.3	150.7	1.0	0.9	0.9	21971849089.0	192.9	0.5	37593.0	29.0	47.0	153.0	390.0	784.0	0.3	1.0	33589404.0	24531199.0	0.1	0.9	0.3	0.8	0.9	1.0	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.8	0.8	0.8	0.5	0.3	0.2	IDT.Exomev2.targets.hg38.bed	947745.0	33951579.0	0.1	5616.0	-39185.7	15234.7	34156137.0
Filler-D0000821_full_basic_stats	199030138.0	199030138.0	101301949.0	96541538.0	75691989.0	20849549.0	135732367.0	63297771.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	167.0	191.0	354.0	263.7	111.9	1.0	0.9	0.9	28368357581.0	258.5	0.5	42080.0	36.0	60.0	198.0	548.0	1115.0	0.2	1.0	33751584.0	27686601.0	0.1	1.0	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	0.9	0.9	0.5	0.4	0.4	IDT.Exomev2.targets.hg38.bed	963392.0	33951579.0	0.0	5839.0	-34249.5	8629.1	34156137.0
Filler-D0000939_full_basic_stats	160848053.0	160848053.0	82344915.0	77436956.0	59959508.0	17477448.0	105383980.0	55464073.0	0.7	0.3	0.8	0.2	0.9	1.0	0.7	167.0	197.0	376.0	281.2	132.9	1.0	0.9	0.9	22800013638.0	201.3	0.5	40862.0	31.0	50.0	159.0	399.0	790.0	0.3	1.0	33655459.0	25168239.0	0.1	1.0	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.8	0.8	0.8	0.4	0.4	0.3	IDT.Exomev2.targets.hg38.bed	949542.0	33951579.0	0.0	5621.0	-30339.7	8892.0	34156137.0
Filler-D0000941_full_basic_stats	181030129.0	181030129.0	91997261.0	87726401.0	68137834.0	19588567.0	125891239.0	55138890.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	160.0	179.0	327.0	236.2	97.1	1.0	1.0	1.0	25583846583.0	232.6	0.5	45147.0	35.0	57.0	181.0	490.0	958.0	0.2	1.0	33737181.0	26780672.0	0.1	1.1	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	0.9	0.9	0.5	0.5	0.4	IDT.Exomev2.targets.hg38.bed	961205.0	33951579.0	0.1	5716.0	-49166.9	19394.4	34156137.0
Filler-D0000950_full_basic_stats	180444340.0	180444340.0	91457125.0	87855455.0	67340128.0	20515327.0	123550000.0	56894340.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	161.0	182.0	327.0	236.4	94.1	1.0	0.9	0.9	25507624738.0	227.8	0.5	24713.0	37.0	60.0	180.0	462.0	934.0	0.2	1.0	33785052.0	27083409.0	0.1	1.1	0.3	0.9	1.0	1.1	1.2	1.2	1.1	1.0	1.0	0.9	0.8	0.8	0.9	0.9	0.5	0.4	0.4	IDT.Exomev2.targets.hg38.bed	956894.0	33951579.0	0.1	5575.0	-47793.6	19529.3	34156137.0
Filler-D0000977_full_basic_stats	155031616.0	155031616.0	78897802.0	75021868.0	57775591.0	17246277.0	104662663.0	50368953.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	164.0	185.0	341.0	250.4	105.6	1.0	0.9	0.9	22007128755.0	194.4	0.4	21760.0	34.0	54.0	157.0	381.0	776.0	0.2	1.0	33725175.0	25535059.0	0.1	0.9	0.3	0.9	0.9	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.8	0.9	0.8	0.4	0.4	0.3	IDT.Exomev2.targets.hg38.bed	957900.0	33951579.0	0.1	5470.0	-35892.3	13218.7	34156137.0
Filler-D0001395_full_basic_stats	176634295.0	176634295.0	89366820.0	86369618.0	66580750.0	19788868.0	122373596.0	54260699.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	163.0	182.0	327.0	234.6	91.6	1.0	1.0	1.0	24987525061.0	227.2	0.5	58483.0	36.0	58.0	177.0	456.0	887.0	0.2	1.0	33764158.0	26655525.0	0.1	1.1	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	1.0	0.9	0.5	0.5	0.4	IDT.Exomev2.targets.hg38.bed	958468.0	33951579.0	0.1	5505.0	-41715.3	15437.2	34156137.0
Filler-D0001496_full_basic_stats	206211786.0	206211786.0	104339621.0	100504439.0	78251628.0	22252811.0	146583431.0	59628355.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	157.0	177.0	311.0	221.7	84.8	1.0	1.0	1.0	29065103677.0	267.7	0.5	54440.0	38.0	61.0	201.0	585.0	1093.0	0.2	1.0	33770625.0	27600041.0	0.1	1.1	0.3	0.9	0.9	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.9	0.9	1.0	0.9	0.5	0.4	0.3	IDT.Exomev2.targets.hg38.bed	957571.0	33951579.0	0.1	5614.0	-76176.7	39617.6	34156137.0
Filler-D0001590_full_basic_stats	190415149.0	190415149.0	96548238.0	92716777.0	71385147.0	21331630.0	131013333.0	59401816.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	161.0	181.0	334.0	239.5	98.5	1.0	0.9	0.9	26951597452.0	242.9	0.5	56707.0	38.0	61.0	188.0	492.0	997.0	0.2	1.0	33787418.0	27588424.0	0.1	1.0	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	0.9	0.9	0.5	0.4	0.3	IDT.Exomev2.targets.hg38.bed	959235.0	33951579.0	0.1	5648.0	-43457.2	15480.2	34156137.0
Filler-D0001618_full_basic_stats	147500754.0	147500754.0	75109787.0	71284371.0	54471310.0	16813061.0	98232776.0	49267978.0	0.7	0.3	0.8	0.2	0.9	1.0	0.7	162.0	186.0	347.0	253.1	110.9	1.0	0.9	0.9	20811175886.0	183.5	0.5	27811.0	29.0	48.0	146.0	361.0	733.0	0.3	1.0	33592161.0	23990944.0	0.1	1.1	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.8	0.9	0.8	0.4	0.4	0.4	IDT.Exomev2.targets.hg38.bed	949193.0	33951579.0	0.1	5659.0	-33018.7	11577.2	34156137.0
Filler-D0001802_full_basic_stats	172808905.0	172808905.0	87797460.0	83943968.0	64123060.0	19820908.0	115832496.0	56976409.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	164.0	187.0	347.0	252.1	107.2	1.0	0.9	0.9	24471904370.0	216.1	0.5	39280.0	35.0	57.0	173.0	424.0	852.0	0.2	1.0	33755369.0	26688556.0	0.1	1.0	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.8	0.9	0.8	0.5	0.4	0.4	IDT.Exomev2.targets.hg38.bed	954572.0	33951579.0	0.0	5654.0	-35263.7	11398.3	34156137.0
Filler-D0001839_full_basic_stats	144291741.0	144291741.0	75192363.0	68193716.0	53052832.0	15140884.0	87090941.0	57200800.0	0.6	0.4	0.8	0.2	0.9	1.0	0.7	166.0	294.0	532.0	345.6	171.9	1.0	0.9	0.9	20280821103.0	169.4	0.5	24825.0	26.0	42.0	137.0	335.0	649.0	0.3	1.0	33400697.0	22820634.0	0.1	1.0	0.3	1.0	0.8	1.1	1.1	1.1	1.1	1.0	1.0	1.0	0.8	0.9	0.9	1.0	0.5	0.4	0.4	IDT.Exomev2.targets.hg38.bed	937095.0	33951579.0	0.1	5634.0	-33313.7	12683.1	34156137.0
Filler-D0001886_full_basic_stats	135572498.0	135572498.0	69406517.0	65345346.0	49792443.0	15552903.0	86521803.0	49050695.0	0.6	0.4	0.8	0.2	0.9	1.0	0.7	167.0	200.0	376.0	281.4	132.7	1.0	0.9	0.9	19146123536.0	164.5	0.4	29696.0	29.0	46.0	136.0	304.0	612.0	0.3	1.0	33582552.0	23245773.0	0.1	1.1	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.8	0.8	0.8	0.4	0.3	0.3	IDT.Exomev2.targets.hg38.bed	945587.0	33951579.0	0.1	5559.0	-32953.8	12810.3	34156137.0
Filler-D0001900_full_basic_stats	203223824.0	203223824.0	103715863.0	98418320.0	78150089.0	20268231.0	138785542.0	64438282.0	0.7	0.3	0.8	0.2	0.9	1.0	0.8	168.0	197.0	371.0	277.4	126.1	1.0	0.9	0.9	28921764684.0	268.1	0.5	53585.0	35.0	58.0	203.0	584.0	1140.0	0.2	1.0	33736882.0	27506777.0	0.1	0.9	0.3	0.8	0.9	1.0	1.1	1.1	1.1	1.0	1.0	0.9	0.9	0.9	1.0	0.9	0.5	0.5	0.3	IDT.Exomev2.targets.hg38.bed	966221.0	33951579.0	0.0	5774.0	-40902.8	11918.0	34156137.0
Filler-D0001907_full_basic_stats	219707779.0	219707779.0	111595596.0	106747812.0	83315954.0	23431858.0	151980446.0	67727333.0	0.7	0.3	0.8	0.2	1.0	1.0	0.9	166.0	186.0	340.0	250.8	101.8	1.0	1.0	1.0	31297934183.0	287.9	0.5	65463.0	43.0	71.0	218.0	573.0	1190.0	0.1	1.0	33823530.0	29400556.0	0.1	1.0	0.3	0.9	0.9	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	0.9	0.8	0.5	0.5	0.4	IDT.Exomev2.targets.hg38.bed	965911.0	33951579.0	0.0	5437.0	-43780.5	13982.9	34156137.0
Filler-D0001916_full_basic_stats	174555268.0	174555268.0	89315369.0	84238856.0	66206427.0	18032429.0	116930182.0	57625086.0	0.7	0.3	0.8	0.2	0.9	1.0	0.8	168.0	197.0	377.0	281.8	132.6	1.0	0.9	0.9	24813910351.0	224.9	0.5	57691.0	32.0	53.0	175.0	459.0	936.0	0.2	1.0	33697157.0	26209318.0	0.1	0.9	0.3	0.8	0.9	1.0	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	0.9	0.9	0.5	0.4	0.3	IDT.Exomev2.targets.hg38.bed	962365.0	33951579.0	0.0	5574.0	-29670.4	8040.1	34156137.0
Filler-D0001938_full_basic_stats	193833345.0	193833345.0	98462786.0	94206973.0	73785824.0	20421149.0	134342816.0	59490529.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	164.0	185.0	342.0	249.6	103.2	1.0	1.0	1.0	27525510072.0	252.3	0.5	46352.0	37.0	60.0	194.0	535.0	1019.0	0.2	1.0	33776438.0	27471800.0	0.1	1.0	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	0.9	0.9	0.5	0.5	0.3	IDT.Exomev2.targets.hg38.bed	961423.0	33951579.0	0.0	5654.0	-41553.1	13421.3	34156137.0
Filler-D0001949_full_basic_stats	177512355.0	177512355.0	90375934.0	85961712.0	66080049.0	19881663.0	119092264.0	58420091.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	165.0	189.0	352.0	256.8	111.1	1.0	0.9	0.9	25075780004.0	223.7	0.5	35064.0	34.0	55.0	175.0	462.0	959.0	0.2	1.0	33724795.0	26300083.0	0.1	1.0	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.8	0.9	0.8	0.5	0.4	0.3	IDT.Exomev2.targets.hg38.bed	955706.0	33951579.0	0.0	5679.0	-34280.1	10312.6	34156137.0
Filler-D0002088_full_basic_stats	183521717.0	183521717.0	93248781.0	89179109.0	69067200.0	20111909.0	125375078.0	58146639.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	163.0	185.0	342.0	249.8	104.1	1.0	0.9	0.9	26024896440.0	235.5	0.5	43136.0	37.0	60.0	182.0	471.0	963.0	0.2	1.0	33780770.0	27267123.0	0.1	1.0	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	0.9	0.9	0.5	0.4	0.4	IDT.Exomev2.targets.hg38.bed	960086.0	33951579.0	0.1	5688.0	-44452.8	16283.7	34156137.0
Filler-D0002301_full_basic_stats	154359568.0	154359568.0	78696979.0	74757988.0	57278266.0	17479722.0	102656809.0	51702759.0	0.7	0.3	0.8	0.2	0.9	1.0	0.7	162.0	188.0	358.0	259.2	118.1	1.0	0.9	0.9	21808540437.0	191.9	0.5	37952.0	32.0	51.0	155.0	373.0	748.0	0.3	1.0	33680635.0	25028327.0	0.1	1.0	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	0.9	0.8	0.5	0.4	0.4	IDT.Exomev2.targets.hg38.bed	953379.0	33951579.0	0.0	5601.0	-33647.0	11554.3	34156137.0
Filler-D0002372_full_basic_stats	201160871.0	201160871.0	102602946.0	97378417.0	76212702.0	21165715.0	137230534.0	63930337.0	0.7	0.3	0.8	0.2	0.9	1.0	0.8	165.0	190.0	359.0	264.2	118.1	1.0	0.9	0.9	28571793804.0	262.7	0.5	39898.0	37.0	59.0	195.0	540.0	1091.0	0.2	1.0	33778188.0	27515374.0	0.1	1.0	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	0.9	0.9	0.5	0.4	0.3	IDT.Exomev2.targets.hg38.bed	959078.0	33951579.0	0.1	5539.0	-47251.7	17207.6	34156137.0
Filler-D0002488_full_basic_stats	168666682.0	168666682.0	85926744.0	81652499.0	63117129.0	18535370.0	113398163.0	55268519.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	163.0	187.0	352.0	258.7	115.6	1.0	0.9	0.9	23855408756.0	211.9	0.5	26782.0	34.0	55.0	170.0	434.0	881.0	0.2	1.0	33737054.0	26196649.0	0.1	0.9	0.3	0.9	0.9	1.0	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	0.9	0.9	0.5	0.4	0.4	IDT.Exomev2.targets.hg38.bed	958569.0	33951579.0	0.1	5559.0	-38677.6	13716.7	34156137.0
Filler-D0002617_full_basic_stats	187251841.0	187251841.0	95670108.0	90633960.0	71279143.0	19354817.0	124534644.0	62717197.0	0.7	0.3	0.8	0.2	0.9	1.0	0.8	169.0	205.0	379.0	287.2	130.0	1.0	0.9	0.9	26622950824.0	241.7	0.5	65316.0	35.0	57.0	186.0	492.0	952.0	0.2	1.0	33741372.0	27067808.0	0.1	1.0	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	0.9	0.8	0.4	0.4	0.3	IDT.Exomev2.targets.hg38.bed	963047.0	33951579.0	0.0	5581.0	-34165.8	9606.2	34156137.0
Filler-D0002650_full_basic_stats	218316960.0	218316960.0	110930657.0	106270541.0	84079346.0	22191195.0	152563054.0	65753906.0	0.7	0.3	0.8	0.2	1.0	1.0	0.8	166.0	188.0	347.0	255.1	104.6	1.0	1.0	1.0	31123583462.0	289.5	0.5	38393.0	39.0	65.0	221.0	646.0	1257.0	0.2	1.0	33778212.0	28584841.0	0.1	0.9	0.3	0.8	0.9	1.0	1.1	1.1	1.1	1.0	1.0	0.9	0.9	0.9	1.0	0.9	0.5	0.5	0.3	IDT.Exomev2.targets.hg38.bed	968691.0	33951579.0	0.0	5720.0	-45925.5	14068.6	34156137.0
Filler-D0002674_full_basic_stats	183552413.0	183552413.0	93801944.0	88611315.0	68551691.0	20059624.0	120800597.0	62751816.0	0.7	0.3	0.8	0.2	0.9	1.0	0.8	167.0	199.0	373.0	279.2	128.8	1.0	0.9	0.9	26040310252.0	231.9	0.5	51613.0	35.0	57.0	181.0	466.0	948.0	0.2	1.0	33743153.0	26915534.0	0.1	1.0	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.8	0.9	0.8	0.4	0.4	0.3	IDT.Exomev2.targets.hg38.bed	952286.0	33951579.0	0.0	5906.0	-37614.7	11639.1	34156137.0
Filler-D0002767_full_basic_stats	146421452.0	146421452.0	74014055.0	71626505.0	54152417.0	17474088.0	100066729.0	46354723.0	0.7	0.3	0.8	0.2	1.0	1.0	0.7	161.0	179.0	316.0	225.8	84.2	1.0	1.0	1.0	20773696836.0	181.9	0.4	35084.0	34.0	54.0	151.0	341.0	687.0	0.3	1.0	33723620.0	25184407.0	0.1	1.1	0.3	0.9	1.0	1.1	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.9	0.9	0.8	0.5	0.4	0.4	IDT.Exomev2.targets.hg38.bed	957566.0	33951579.0	0.0	5672.0	-30513.8	10007.4	34156137.0

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: seqtool_full_basic_stats_table_table

Sort	Column	Description	ID
\|\|	reads	reads	`seqtool-reads`
\|\|	unmapped	unmapped	`seqtool-unmapped`
\|\|	unique_reads	unique_reads	`seqtool-unique_reads`
\|\|	pairs	pairs	`seqtool-pairs`
\|\|	proper_pairs	proper_pairs	`seqtool-proper_pairs`
\|\|	pairs_on_target	pairs_on_target	`seqtool-pairs_on_target`
\|\|	pairs_off_target	pairs_off_target	`seqtool-pairs_off_target`
\|\|	reads_on_target	reads_on_target	`seqtool-reads_on_target`
\|\|	reads_off_target	reads_off_target	`seqtool-reads_off_target`
\|\|	dupes	dupes	`seqtool-dupes`
\|\|	frac_unmapped	frac_unmapped	`seqtool-frac_unmapped`
\|\|	frac_dupes	frac_dupes	`seqtool-frac_dupes`
\|\|	frac_reads_on_target	frac_reads_on_target	`seqtool-frac_reads_on_target`
\|\|	frac_reads_off_target	frac_reads_off_target	`seqtool-frac_reads_off_target`
\|\|	frac_pairs_on_target	frac_pairs_on_target	`seqtool-frac_pairs_on_target`
\|\|	frac_pairs_off_target	frac_pairs_off_target	`seqtool-frac_pairs_off_target`
\|\|	frac_proper_pairs	frac_proper_pairs	`seqtool-frac_proper_pairs`
\|\|	frac_bases_gt30x	frac_bases_gt30x	`seqtool-frac_bases_gt30x`
\|\|	frac_bases_gt100x	frac_bases_gt100x	`seqtool-frac_bases_gt100x`
\|\|	frag_size_q20	frag_size_q20	`seqtool-frag_size_q20`
\|\|	frag_size_median	frag_size_median	`seqtool-frag_size_median`
\|\|	frag_size_q80	frag_size_q80	`seqtool-frag_size_q80`
\|\|	frag_size_mean	frag_size_mean	`seqtool-frag_size_mean`
\|\|	frag_size_std	frag_size_std	`seqtool-frag_size_std`
\|\|	n_q20	n_q20	`seqtool-n_q20`
\|\|	n_q25	n_q25	`seqtool-n_q25`
\|\|	n_q30	n_q30	`seqtool-n_q30`
\|\|	n_bases	n_bases	`seqtool-n_bases`
\|\|	min_depth	min_depth	`seqtool-min_depth`
\|\|	mean_depth	mean_depth	`seqtool-mean_depth`
\|\|	cv_depth	cv_depth	`seqtool-cv_depth`
\|\|	max_depth	max_depth	`seqtool-max_depth`
\|\|	q1_depth	q1_depth	`seqtool-q1_depth`
\|\|	q5_depth	q5_depth	`seqtool-q5_depth`
\|\|	q50_depth	q50_depth	`seqtool-q50_depth`
\|\|	q95_depth	q95_depth	`seqtool-q95_depth`
\|\|	q99_depth	q99_depth	`seqtool-q99_depth`
\|\|	lt100x	lt100x	`seqtool-lt100x`
\|\|	lt700x	lt700x	`seqtool-lt700x`
\|\|	n_bases_gt30x	n_bases_gt30x	`seqtool-n_bases_gt30x`
\|\|	n_bases_gt100x	n_bases_gt100x	`seqtool-n_bases_gt100x`
\|\|	gc_0.0	gc_0.0	`seqtool-gc_0_0`
\|\|	gc_0.05	gc_0.05	`seqtool-gc_0_05`
\|\|	gc_0.1	gc_0.1	`seqtool-gc_0_1`
\|\|	gc_0.15	gc_0.15	`seqtool-gc_0_15`
\|\|	gc_0.2	gc_0.2	`seqtool-gc_0_2`
\|\|	gc_0.25	gc_0.25	`seqtool-gc_0_25`
\|\|	gc_0.3	gc_0.3	`seqtool-gc_0_3`
\|\|	gc_0.35	gc_0.35	`seqtool-gc_0_35`
\|\|	gc_0.4	gc_0.4	`seqtool-gc_0_4`
\|\|	gc_0.45	gc_0.45	`seqtool-gc_0_45`
\|\|	gc_0.5	gc_0.5	`seqtool-gc_0_5`
\|\|	gc_0.55	gc_0.55	`seqtool-gc_0_55`
\|\|	gc_0.6	gc_0.6	`seqtool-gc_0_6`
\|\|	gc_0.65	gc_0.65	`seqtool-gc_0_65`
\|\|	gc_0.7	gc_0.7	`seqtool-gc_0_7`
\|\|	gc_0.75	gc_0.75	`seqtool-gc_0_75`
\|\|	gc_0.8	gc_0.8	`seqtool-gc_0_8`
\|\|	gc_0.85	gc_0.85	`seqtool-gc_0_85`
\|\|	gc_0.9	gc_0.9	`seqtool-gc_0_9`
\|\|	gc_0.95	gc_0.95	`seqtool-gc_0_95`
\|\|	gc_1.0	gc_1.0	`seqtool-gc_1_0`
\|\|	bed	bed	`seqtool-bed`
\|\|	saturation_at_1000000_reads	saturation_at_1000000_reads	`seqtool-saturation_at_1000000_reads`
\|\|	roi_size	roi_size	`seqtool-roi_size`
\|\|	contam	contam	`seqtool-contam`
\|\|	n_sites	n_sites	`seqtool-n_sites`
\|\|	loglik	loglik	`seqtool-loglik`
\|\|	lrt	lrt	`seqtool-lrt`
\|\|	bed_base_count	bed_base_count	`seqtool-bed_base_count`

Picard

Tools for manipulating high-throughput sequencing data.http://broadinstitute.github.io/picard

Hybrid-selection metrics

Parsed from Picard HsMetrics tool that takes a SAM/BAM file input and collects metrics that are specific for sequence datasets generated through hybrid-selection. Hybrid-selection (HS) is the most commonly used technique to capture exon-specific sequences for targeted sequencing experiments such as exome sequencing.

Showing ³²/₃₂ rows and ²⁴/₂₉ columns.

Sample Name	At dropout	Bait design efficiency	Bait territory	Fold 80 base penalty	Fold enrichment	Gc dropout	Het SNP q	Het SNP sensitivity	Near-bait bases	Off-bait bases	On-bait bases	On-target bases	Usable bases on-bait	Usable bases on-target	PF bases	PF bases aligned	PF reads	Selected bases	PF unique reads	PF unique bases aligned	PF unique reads aligned	Total reads	Max target coverage	Mean bait coverage	Mean target coverage	Median target coverage	On-bait vs selected	Target territory	Zero coverage targets
Filler-D0000276	13.2	0.8	42301960.0	2.0	39.1	0.1	20.0	1.0	5145.9Mb	4853.4Mb	10567.2Mb	5862.7Mb	51.0%	28.3%	20738.9Mb	20566.5Mb	147.1M	76.4%	147.1M	20566.5Mb	147.1M	147.1M	13362.0	249.8	171.7	156.0	0.7	34149253.0	0.7%
Filler-D0000330	15.9	0.8	42301960.0	2.2	40.1	0.4	20.0	1.0	6746.2Mb	6231.7Mb	14503.1Mb	7746.7Mb	52.3%	28.0%	27711.4Mb	27480.9Mb	195.9M	77.3%	195.9M	27480.9Mb	195.9M	195.9M	19330.0	342.8	226.8	194.0	0.7	34149253.0	0.8%
Filler-D0000393	16.2	0.8	42301960.0	2.2	40.7	0.5	20.0	1.0	6855.6Mb	5985.9Mb	14756.5Mb	8177.5Mb	53.1%	29.4%	27803.7Mb	27598.0Mb	195.9M	78.3%	195.9M	27598.0Mb	195.9M	195.9M	15973.0	348.8	239.5	205.0	0.7	34149253.0	0.9%
Filler-D0000445	16.8	0.8	42301960.0	2.3	40.6	0.6	20.0	1.0	7836.5Mb	6653.8Mb	16579.9Mb	9187.5Mb	53.0%	29.4%	31301.3Mb	31070.1Mb	219.8M	78.6%	219.8M	31070.1Mb	219.8M	219.8M	16964.0	391.9	269.0	227.0	0.7	34149253.0	0.7%
Filler-D0000613	17.8	0.8	42301960.0	2.4	40.1	0.8	20.0	1.0	7414.7Mb	6027.2Mb	15003.2Mb	8679.9Mb	52.4%	30.3%	28656.4Mb	28445.1Mb	201.6M	78.8%	201.6M	28445.1Mb	201.6M	201.6M	16494.0	354.7	254.2	213.0	0.7	34149253.0	0.7%
Filler-D0000617	15.7	0.8	42301960.0	2.2	40.0	0.4	20.0	1.0	6366.2Mb	5683.9Mb	13380.1Mb	7344.7Mb	52.2%	28.6%	25640.3Mb	25430.2Mb	182.0M	77.6%	182.0M	25430.2Mb	182.0M	182.0M	15092.0	316.3	215.1	186.0	0.7	34149253.0	0.7%
Filler-D0000692	15.0	0.8	42301960.0	2.2	37.8	0.3	21.0	1.0	6013.9Mb	4933.1Mb	10844.2Mb	6351.4Mb	49.4%	28.9%	21971.8Mb	21791.2Mb	155.3M	77.4%	155.3M	21791.2Mb	155.3M	155.3M	11291.0	256.4	186.0	164.0	0.6	34149253.0	0.7%
Filler-D0000821	16.9	0.8	42301960.0	2.3	39.6	0.5	20.0	1.0	7402.1Mb	6077.0Mb	14672.3Mb	8433.9Mb	51.7%	29.7%	28368.4Mb	28151.4Mb	199.0M	78.4%	199.0M	28151.4Mb	199.0M	199.0M	15756.0	346.8	247.0	209.0	0.7	34149253.0	0.8%
Filler-D0000939	15.3	0.8	42301960.0	2.1	38.0	0.4	20.0	1.0	6132.7Mb	5173.2Mb	11300.6Mb	6580.3Mb	49.6%	28.9%	22800.0Mb	22606.6Mb	160.8M	77.1%	160.8M	22606.6Mb	160.8M	160.8M	15319.0	267.1	192.7	170.0	0.6	34149253.0	0.7%
Filler-D0000941	16.5	0.8	42301960.0	2.2	41.1	0.5	20.0	1.0	6153.4Mb	5529.7Mb	13705.2Mb	7488.5Mb	53.6%	29.3%	25583.8Mb	25388.4Mb	181.0M	78.2%	181.0M	25388.4Mb	181.0M	181.0M	16740.0	324.0	219.3	188.0	0.7	34149253.0	0.9%
Filler-D0000950	15.4	0.8	42301960.0	2.1	40.4	0.5	20.0	1.0	6133.2Mb	5744.4Mb	13427.4Mb	7347.9Mb	52.6%	28.8%	25507.6Mb	25305.0Mb	180.4M	77.3%	180.4M	25305.0Mb	180.4M	180.4M	13091.0	317.4	215.2	187.0	0.7	34149253.0	0.8%
Filler-D0000977	13.3	0.8	42301960.0	2.0	39.6	0.1	20.0	1.0	5474.0Mb	4985.0Mb	11379.5Mb	6327.6Mb	51.7%	28.8%	22007.1Mb	21838.5Mb	155.0M	77.2%	155.0M	21838.5Mb	155.0M	155.0M	10612.0	269.0	185.3	166.0	0.7	34149253.0	0.7%
Filler-D0001395	15.6	0.8	42301960.0	2.2	40.8	0.4	20.0	1.0	6033.0Mb	5465.5Mb	13300.7Mb	7205.3Mb	53.2%	28.8%	24987.5Mb	24799.2Mb	176.6M	78.0%	176.6M	24799.2Mb	176.6M	176.6M	12819.0	314.4	211.0	184.0	0.7	34149253.0	0.8%
Filler-D0001496	18.7	0.8	42301960.0	2.4	42.1	0.9	20.0	1.0	6764.0Mb	6132.7Mb	15956.8Mb	8454.2Mb	54.9%	29.1%	29065.1Mb	28853.6Mb	206.2M	78.7%	206.2M	28853.6Mb	206.2M	206.2M	14062.0	377.2	247.6	205.0	0.7	34149253.0	0.9%
Filler-D0001590	15.3	0.8	42301960.0	2.2	40.5	0.4	20.0	1.0	6484.4Mb	6023.3Mb	14235.8Mb	7693.1Mb	52.8%	28.5%	26951.6Mb	26743.4Mb	190.4M	77.5%	190.4M	26743.4Mb	190.4M	190.4M	14881.0	336.5	225.3	196.0	0.7	34149253.0	0.8%
Filler-D0001618	14.8	0.8	42301960.0	2.1	39.1	0.3	20.0	1.0	5216.6Mb	4822.1Mb	10599.9Mb	5921.5Mb	50.9%	28.5%	20811.2Mb	20638.7Mb	147.5M	76.6%	147.5M	20638.7Mb	147.5M	147.5M	11313.0	250.6	173.4	154.0	0.7	34149253.0	0.8%
Filler-D0001802	14.7	0.8	42301960.0	2.1	39.2	0.3	20.0	1.0	6103.2Mb	5650.7Mb	12518.5Mb	6987.0Mb	51.2%	28.6%	24471.9Mb	24272.4Mb	172.8M	76.7%	172.8M	24272.4Mb	172.8M	172.8M	12190.0	295.9	204.6	182.0	0.7	34149253.0	0.7%
Filler-D0001839	15.3	0.8	42301960.0	2.2	34.7	0.3	21.0	1.0	6108.6Mb	4805.5Mb	9174.7Mb	5737.1Mb	45.2%	28.3%	20280.8Mb	20088.9Mb	144.3M	76.1%	144.3M	20088.9Mb	144.3M	144.3M	16788.0	216.9	168.0	150.0	0.6	34149253.0	0.7%
Filler-D0001886	13.0	0.8	42301960.0	1.9	37.1	0.1	20.0	1.0	5202.8Mb	4513.2Mb	9261.1Mb	5442.8Mb	48.4%	28.4%	19146.1Mb	18977.0Mb	135.6M	76.2%	135.6M	18977.0Mb	135.6M	135.6M	12485.0	218.9	159.4	147.0	0.6	34149253.0	0.7%
Filler-D0001900	18.2	0.8	42301960.0	2.4	39.6	0.7	20.0	1.0	7804.7Mb	5966.9Mb	14940.5Mb	8812.3Mb	51.7%	30.5%	28921.8Mb	28712.2Mb	203.2M	79.2%	203.2M	28712.2Mb	203.2M	203.2M	18871.0	353.2	258.1	216.0	0.7	34149253.0	0.8%
Filler-D0001907	14.9	0.8	42301960.0	2.2	40.5	0.3	20.0	1.0	7778.3Mb	6758.2Mb	16538.1Mb	9029.8Mb	52.8%	28.9%	31297.9Mb	31074.6Mb	219.7M	78.3%	219.7M	31074.6Mb	219.7M	219.7M	18715.0	391.0	264.4	229.0	0.7	34149253.0	0.7%
Filler-D0001916	15.8	0.8	42301960.0	2.2	38.9	0.3	20.0	1.0	6664.0Mb	5362.6Mb	12603.2Mb	7314.2Mb	50.8%	29.5%	24813.9Mb	24629.8Mb	174.6M	78.2%	174.6M	24629.8Mb	174.6M	174.6M	13949.0	297.9	214.2	186.0	0.7	34149253.0	0.7%
Filler-D0001938	17.2	0.8	42301960.0	2.3	40.6	0.6	20.0	1.0	6925.4Mb	5828.4Mb	14566.2Mb	8172.3Mb	52.9%	29.7%	27525.5Mb	27320.0Mb	193.8M	78.7%	193.8M	27320.0Mb	193.8M	193.8M	18125.0	344.3	239.3	203.0	0.7	34149253.0	0.7%
Filler-D0001949	16.0	0.8	42301960.0	2.2	39.2	0.4	20.0	1.0	6350.6Mb	5686.1Mb	12834.5Mb	7260.5Mb	51.2%	29.0%	25075.8Mb	24871.3Mb	177.5M	77.1%	177.5M	24871.3Mb	177.5M	177.5M	14003.0	303.4	212.6	184.0	0.7	34149253.0	0.7%
Filler-D0002088	15.1	0.8	42301960.0	2.1	40.1	0.4	20.0	1.0	6479.7Mb	5737.9Mb	13607.1Mb	7510.3Mb	52.3%	28.9%	26024.9Mb	25824.6Mb	183.5M	77.8%	183.5M	25824.6Mb	183.5M	183.5M	14777.0	321.7	219.9	192.0	0.7	34149253.0	0.7%
Filler-D0002301	14.2	0.8	42301960.0	2.1	39.0	0.2	20.0	1.0	5536.9Mb	5012.6Mb	11083.0Mb	6213.6Mb	50.8%	28.5%	21808.5Mb	21632.4Mb	154.4M	76.8%	154.4M	21632.4Mb	154.4M	154.4M	13019.0	262.0	182.0	163.0	0.7	34149253.0	0.7%
Filler-D0002372	17.0	0.8	42301960.0	2.3	39.8	0.6	20.0	1.0	7348.9Mb	6155.2Mb	14846.7Mb	8288.4Mb	52.0%	29.0%	28571.8Mb	28350.8Mb	201.2M	78.3%	201.2M	28350.8Mb	201.2M	201.2M	15102.0	351.0	242.7	206.0	0.7	34149253.0	0.7%
Filler-D0002488	15.2	0.8	42301960.0	2.1	39.5	0.4	20.0	1.0	6049.4Mb	5336.5Mb	12280.5Mb	6977.0Mb	51.5%	29.2%	23855.4Mb	23666.4Mb	168.7M	77.5%	168.7M	23666.4Mb	168.7M	168.7M	10984.0	290.3	204.3	179.0	0.7	34149253.0	0.7%
Filler-D0002617	16.4	0.8	42301960.0	2.2	38.4	0.5	20.0	1.0	7372.8Mb	5692.3Mb	13350.9Mb	7913.7Mb	50.1%	29.7%	26623.0Mb	26416.0Mb	187.3M	78.5%	187.3M	26416.0Mb	187.3M	187.3M	15733.0	315.6	231.7	201.0	0.6	34149253.0	0.7%
Filler-D0002650	18.2	0.8	42301960.0	2.4	40.8	0.7	20.0	1.0	7917.2Mb	6414.8Mb	16574.0Mb	9539.0Mb	53.3%	30.6%	31123.6Mb	30906.0Mb	218.3M	79.2%	218.3M	30906.0Mb	218.3M	218.3M	20766.0	391.8	279.3	232.0	0.7	34149253.0	0.8%
Filler-D0002674	15.4	0.8	42301960.0	2.2	38.2	0.4	20.0	1.0	6956.0Mb	5888.3Mb	12974.3Mb	7552.6Mb	49.8%	29.0%	26040.3Mb	25818.7Mb	183.6M	77.2%	183.6M	25818.7Mb	183.6M	183.6M	15114.0	306.7	221.2	194.0	0.7	34149253.0	0.7%
Filler-D0002767	12.5	0.8	42301960.0	1.9	40.3	0.1	20.0	1.0	4822.5Mb	4871.0Mb	10924.4Mb	5852.5Mb	52.6%	28.2%	20773.7Mb	20618.0Mb	146.4M	76.4%	146.4M	20618.0Mb	146.4M	146.4M	10187.0	258.2	171.4	156.0	0.7	34149253.0	0.8%

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: picard_hsmetrics_table_table

Sort	Column	Description	ID	Scale
\|\|	At dropout	A measure of how undercovered <= 50% GC regions are relative to the mean.	`hsmetrics-AT_DROPOUT`
\|\|	Bait design efficiency	Target territory / bait territory. 1 == perfectly efficient, 0.5 = half of baited bases are not target.	`hsmetrics-BAIT_DESIGN_EFFICIENCY`
\|\|	Bait territory	The number of bases which have one or more baits on top of them.	`hsmetrics-BAIT_TERRITORY`
\|\|	Fold 80 base penalty	The fold over-coverage necessary to raise 80% of bases in "non-zero-cvg" targets to the mean coverage level in those targets.	`hsmetrics-FOLD_80_BASE_PENALTY`
\|\|	Fold enrichment	The fold by which the baited region has been amplified above genomic background.	`hsmetrics-FOLD_ENRICHMENT`
\|\|	Gc dropout	A measure of how undercovered >= 50% GC regions are relative to the mean.	`hsmetrics-GC_DROPOUT`
\|\|	Het SNP q	The Phred Scaled Q Score of the theoretical HET SNP sensitivity.	`hsmetrics-HET_SNP_Q`
\|\|	Het SNP sensitivity	The theoretical HET SNP sensitivity.	`hsmetrics-HET_SNP_SENSITIVITY`
\|\|	Near-bait bases	The number of PF aligned bases that mapped to within a fixed interval of a baited region, but not on a baited region.	`hsmetrics-NEAR_BAIT_BASES`	base_count
\|\|	Off-bait bases	The number of PF aligned bases that mapped to neither on or near a bait.	`hsmetrics-OFF_BAIT_BASES`	base_count
\|\|	On-bait bases	The number of PF aligned bases that mapped to a baited region of the genome.	`hsmetrics-ON_BAIT_BASES`	base_count
\|\|	On-target bases	The number of PF aligned bases that mapped to a targeted region of the genome.	`hsmetrics-ON_TARGET_BASES`	base_count
\|\|	Usable bases on-bait	The number of aligned, de-duped, on-bait bases out of the PF bases available.	`hsmetrics-PCT_USABLE_BASES_ON_BAIT`
\|\|	Usable bases on-target	The number of aligned, de-duped, on-target bases out of the PF bases available.	`hsmetrics-PCT_USABLE_BASES_ON_TARGET`
\|\|	PF bases	The number of bases in the PF reads.	`hsmetrics-PF_BASES`	base_count
\|\|	PF bases aligned	The number of PF unique bases that are aligned with mapping score > 0 to the reference genome.	`hsmetrics-PF_BASES_ALIGNED`	base_count
\|\|	PF reads	The number of reads that pass the vendor's filter.	`hsmetrics-PF_READS`	read_count
\|\|	Selected bases	On+Near Bait Bases / PF Bases Aligned.	`hsmetrics-PCT_SELECTED_BASES`
\|\|	PF unique reads	The number of PF reads that are not marked as duplicates.	`hsmetrics-PF_UNIQUE_READS`	read_count
\|\|	PF unique bases aligned	The number of bases in the PF aligned reads that are mapped to a reference base. Accounts for clipping and gaps.	`hsmetrics-PF_UQ_BASES_ALIGNED`	base_count
\|\|	PF unique reads aligned	The number of PF unique reads that are aligned with mapping score > 0 to the reference genome.	`hsmetrics-PF_UQ_READS_ALIGNED`	read_count
\|\|	Total reads	The total number of reads in the SAM or BAM file examine.	`hsmetrics-TOTAL_READS`	read_count
\|\|	Max target coverage	The maximum coverage of reads that mapped to target regions of an experiment.	`hsmetrics-MAX_TARGET_COVERAGE`
\|\|	Mean bait coverage	The mean coverage of all baits in the experiment.	`hsmetrics-MEAN_BAIT_COVERAGE`
\|\|	Mean target coverage	The mean coverage of targets.	`hsmetrics-MEAN_TARGET_COVERAGE`
\|\|	Median target coverage	The median coverage of targets.	`hsmetrics-MEDIAN_TARGET_COVERAGE`
\|\|	On-bait vs selected	The percentage of on+near bait bases that are on as opposed to near.	`hsmetrics-ON_BAIT_VS_SELECTED`
\|\|	Target territory	The unique number of target bases in the experiment where target is usually exons etc.	`hsmetrics-TARGET_TERRITORY`
\|\|	Zero coverage targets	The fraction of targets that did not reach coverage=1 over any base.	`hsmetrics-ZERO_CVG_TARGETS_PCT`

Hybrid-selection target coverage

The percentage of all target bases with at least x fold coverage.

Created with MultiQC

Insert Size

Plot shows the number of reads at a given insert size. Reads with different orientations are summed.

Created with MultiQC

Samtools

Version:


                      
                        1.21

HTSlib:


                      
                        1.23

Toolkit for interacting with BAM/CRAM files.http://www.htslib.orgDOI: 10.1093/bioinformatics/btp352

Percent mapped

Alignment metrics from samtools stats; mapped vs. unmapped reads vs. reads mapped with MQ0.

For a set of samples that have come from the same multiplexed library, similar numbers of reads for each sample are expected. Large differences in numbers might indicate issues during the library preparation process. Whilst large differences in read numbers may be controlled for in downstream processings (e.g. read count normalisation), you may wish to consider whether the read depths achieved have fallen below recommended levels depending on the applications.

Low alignment rates could indicate contamination of samples (e.g. adapter sequences), low sequencing quality or other artefacts. These can be further investigated in the sequence level QC (e.g. from FastQC).

Reads mapped with MQ0 often indicate that the reads are ambiguously mapped to multiple locations in the reference sequence. This can be due to repetitive regions in the genome, the presence of alternative contigs in the reference, or due to reads that are too short to be uniquely mapped. These reads are often filtered out in downstream analyses.

Created with MultiQC

Alignment stats

This module parses the output from samtools stats. All numbers in millions.

Created with MultiQC

Showing ³²/₃₂ rows and ¹³/₁₃ columns.

Sample Name	Total sequences	Mapped & paired	Properly paired	Duplicated	QC Failed	Reads MQ0	Mapped bases (CIGAR)	Bases Trimmed	Duplicated bases	Diff chromosomes	Other orientation	Inward pairs	Outward pairs
Filler-D0000276	147.1M	147.1M	142.7M	0.0M	0.0M	21.5M	20579.4Mb	0.0Mb	0.0Mb	1.3M	0.2M	68.4M	3.7M
Filler-D0000330	195.9M	195.9M	189.8M	0.0M	0.0M	34.9M	27498.7Mb	0.0Mb	0.0Mb	1.8M	0.3M	91.7M	4.2M
Filler-D0000393	195.9M	195.9M	191.3M	0.0M	0.0M	29.7M	27614.2Mb	0.0Mb	0.0Mb	1.5M	0.2M	92.8M	3.5M
Filler-D0000445	219.8M	219.8M	214.7M	0.0M	0.0M	34.7M	31088.5Mb	0.0Mb	0.0Mb	1.7M	0.2M	104.4M	3.6M
Filler-D0000613	201.6M	201.6M	195.7M	0.0M	0.0M	27.9M	28461.2Mb	0.0Mb	0.0Mb	1.9M	0.2M	95.3M	3.4M
Filler-D0000617	182.0M	182.0M	176.2M	0.0M	0.0M	28.7M	25445.0Mb	0.0Mb	0.0Mb	1.8M	0.2M	84.2M	4.8M
Filler-D0000692	155.3M	155.3M	149.1M	0.0M	0.0M	21.6M	21803.3Mb	0.0Mb	0.0Mb	2.3M	0.3M	71.6M	3.4M
Filler-D0000821	199.0M	199.0M	193.2M	0.0M	0.0M	29.7M	28168.9Mb	0.0Mb	0.0Mb	1.9M	0.2M	94.6M	2.8M
Filler-D0000939	160.8M	160.8M	154.9M	0.0M	0.0M	23.8M	22619.5Mb	0.0Mb	0.0Mb	2.0M	0.3M	75.1M	3.0M
Filler-D0000941	181.0M	181.0M	175.5M	0.0M	0.0M	25.8M	25403.7Mb	0.0Mb	0.0Mb	1.6M	0.2M	84.2M	4.5M
Filler-D0000950	180.4M	180.4M	175.8M	0.0M	0.0M	27.2M	25320.8Mb	0.0Mb	0.0Mb	1.3M	0.2M	84.4M	4.3M
Filler-D0000977	155.0M	155.0M	150.1M	0.0M	0.0M	21.4M	21852.2Mb	0.0Mb	0.0Mb	1.5M	0.2M	72.9M	3.0M
Filler-D0001395	176.6M	176.6M	172.8M	0.0M	0.0M	27.4M	24814.7Mb	0.0Mb	0.0Mb	1.1M	0.2M	83.3M	3.7M
Filler-D0001496	206.2M	206.2M	201.1M	0.0M	0.0M	31.6M	28870.7Mb	0.0Mb	0.0Mb	1.3M	0.2M	95.8M	5.8M
Filler-D0001590	190.4M	190.4M	185.5M	0.0M	0.0M	30.1M	26759.6Mb	0.0Mb	0.0Mb	1.4M	0.2M	89.0M	4.6M
Filler-D0001618	147.5M	147.5M	142.6M	0.0M	0.0M	22.3M	20651.0Mb	0.0Mb	0.0Mb	1.4M	0.2M	68.5M	3.6M
Filler-D0001802	172.8M	172.8M	168.0M	0.0M	0.0M	25.5M	24287.2Mb	0.0Mb	0.0Mb	1.5M	0.2M	81.2M	3.6M
Filler-D0001839	144.3M	144.3M	136.4M	0.0M	0.0M	19.7M	20099.2Mb	0.0Mb	0.0Mb	3.1M	0.3M	64.8M	3.8M
Filler-D0001886	135.6M	135.6M	130.7M	0.0M	0.0M	19.0M	18988.7Mb	0.0Mb	0.0Mb	1.7M	0.2M	63.1M	2.8M
Filler-D0001900	203.2M	203.2M	196.9M	0.0M	0.0M	28.6M	28727.2Mb	0.0Mb	0.0Mb	2.2M	0.3M	96.2M	2.9M
Filler-D0001907	219.7M	219.7M	213.6M	0.0M	0.0M	35.6M	31093.0Mb	0.0Mb	0.0Mb	1.8M	0.2M	104.5M	3.2M
Filler-D0001916	174.6M	174.6M	168.5M	0.0M	0.0M	25.6M	24643.2Mb	0.0Mb	0.0Mb	2.1M	0.2M	82.1M	2.8M
Filler-D0001938	193.8M	193.8M	188.5M	0.0M	0.0M	27.9M	27335.8Mb	0.0Mb	0.0Mb	1.6M	0.2M	91.5M	3.5M
Filler-D0001949	177.5M	177.5M	172.0M	0.0M	0.0M	27.4M	24886.4Mb	0.0Mb	0.0Mb	1.7M	0.2M	83.1M	3.7M
Filler-D0002088	183.5M	183.5M	178.4M	0.0M	0.0M	28.2M	25840.3Mb	0.0Mb	0.0Mb	1.6M	0.2M	86.2M	3.8M
Filler-D0002301	154.4M	154.4M	149.6M	0.0M	0.0M	22.7M	21645.6Mb	0.0Mb	0.0Mb	1.6M	0.2M	71.8M	3.6M
Filler-D0002372	201.2M	201.2M	194.8M	0.0M	0.0M	33.3M	28367.0Mb	0.0Mb	0.0Mb	2.1M	0.3M	94.4M	3.8M
Filler-D0002488	168.7M	168.7M	163.4M	0.0M	0.0M	23.2M	23680.9Mb	0.0Mb	0.0Mb	1.7M	0.2M	78.7M	3.8M
Filler-D0002617	187.3M	187.3M	181.3M	0.0M	0.0M	27.2M	26430.5Mb	0.0Mb	0.0Mb	2.1M	0.2M	88.5M	2.7M
Filler-D0002650	218.3M	218.3M	212.6M	0.0M	0.0M	29.8M	30923.0Mb	0.0Mb	0.0Mb	1.9M	0.2M	104.0M	3.1M
Filler-D0002674	183.6M	183.6M	177.3M	0.0M	0.0M	28.0M	25833.5Mb	0.0Mb	0.0Mb	2.1M	0.3M	86.1M	3.3M
Filler-D0002767	146.4M	146.4M	143.3M	0.0M	0.0M	20.7M	20631.7Mb	0.0Mb	0.0Mb	0.9M	0.1M	69.2M	3.0M

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: samtools-stats-dp_table

Sort	Column	Description	ID	Scale
\|\|	Total sequences	Total sequences	`raw_total_sequences`	read_count
\|\|	Mapped & paired	Paired-end technology bit set + both mates mapped	`reads_mapped_and_paired`	read_count
\|\|	Properly paired	Proper-pair bit set	`reads_properly_paired`	read_count
\|\|	Duplicated	PCR or optical duplicate bit set	`reads_duplicated`	read_count
\|\|	QC Failed	QC Failed	`reads_QC_failed`	read_count
\|\|	Reads MQ0	Reads mapped and MQ=0	`reads_MQ0`	read_count
\|\|	Mapped bases (CIGAR)	Mapped bases (CIGAR)	`bases_mapped__cigar`	base_count
\|\|	Bases Trimmed	Bases Trimmed	`bases_trimmed`	base_count
\|\|	Duplicated bases	Duplicated bases	`bases_duplicated`	base_count
\|\|	Diff chromosomes	Pairs on different chromosomes	`pairs_on_different_chromosomes`	read_count
\|\|	Other orientation	Pairs with other orientation	`pairs_with_other_orientation`	read_count
\|\|	Inward pairs	Inward oriented pairs	`inward_oriented_pairs`	read_count
\|\|	Outward pairs	Outward oriented pairs	`outward_oriented_pairs`	read_count

Sambamba

Version:


                      
                        1.0.1

Toolkit for interacting with BAM/CRAM files.https://lomereiter.github.io/sambambaDOI: 10.1093/bioinformatics/btv098

It is functionally similar to Samtools, but the source code is written in the D Language. It allows for faster performance while still being easy to use.

Sambamba Markdup

Number of reads, categorised by duplication state. Pair counts are doubled - see help text for details.

The table in the Picard metrics file contains some columns referring read pairs and some referring to single reads.

To make the numbers in this plot sum correctly, values referring to pairs are doubled according to the scheme below:

Total Sorted Paired End Reads = (Sorted End Pairs * 2) - Duplicate Reads
Total Single End Reads = Single Ends - (2 * Single Unmatched Pairs)
Total Single Unmatched Reads = 2 * Single Unmatched Pairs

Created with MultiQC

UMI-tools

Version:


                      
                        1.1.5

Tools for dealing with Unique Molecular Identifiers (UMIs)/(RMTs) and scRNA-Seq barcodes.https://github.com/CGATOxford/UMI-toolsDOI: 10.1101/gr.209601.116

UMI-tools was run in parallel by chromosome. Report represents only stats from chr1

Deduplicated Reads

Created with MultiQC

UMI Stats

Statistics from running umi_tools dedup or umi_tools extract

Positions Dedup: Total number of positions deduplicated
Total UMIs: Total UMIs found in sample
Unique UMIs: Unique UMIs found in sample
Mean #UMI: Mean number of unique UMIs per position
Max #UMI: Max number of unique UMIs per position

Created with MultiQC

Showing ³²/₃₂ rows and ⁵/₅ columns.

Sample Name	Positions Dedup	Total UMIs	Unique UMIs	Mean #UMI	Max #UMI
Filler-D0000276	7249358	85408789	71077	1.13	199
Filler-D0000330	9258508	146495710	84116	1.17	224
Filler-D0000393	9409822	99111893	73426	1.12	205
Filler-D0000445	10519777	138013918	80353	1.15	211
Filler-D0000613	9928646	108513680	77007	1.13	216
Filler-D0000617	8830922	106156292	74966	1.13	206
Filler-D0000692	7726208	85687220	72045	1.14	168
Filler-D0000821	9728143	127112970	80519	1.15	203
Filler-D0000939	7886297	119083066	80586	1.16	179
Filler-D0000941	8724640	87187861	71239	1.12	227
Filler-D0000950	8799627	121165761	78295	1.15	209
Filler-D0000977	7666514	79618823	69152	1.12	183
Filler-D0001395	8583965	93071487	72386	1.12	207
Filler-D0001496	9814348	113791257	74908	1.13	227
Filler-D0001590	9246726	119114170	78020	1.14	237
Filler-D0001618	7256130	100428411	73590	1.14	188
Filler-D0001802	8377901	111810592	75288	1.14	204
Filler-D0001839	7247947	81999049	73178	1.16	204
Filler-D0001886	6686727	80921417	69613	1.14	183
Filler-D0001900	9831367	109605409	77523	1.13	194
Filler-D0001907	10391418	122345199	76698	1.14	219
Filler-D0001916	8552001	86349000	69649	1.12	162
Filler-D0001938	9444613	120192868	79613	1.14	196
Filler-D0001949	8676515	123316004	80893	1.15	196
Filler-D0002088	8918450	108387394	76481	1.13	237
Filler-D0002301	7553786	81351936	70404	1.12	209
Filler-D0002372	9513562	126417881	81673	1.15	197
Filler-D0002488	8319187	87573811	70579	1.12	181
Filler-D0002617	9133927	104552890	74837	1.13	190
Filler-D0002650	10648513	116501522	76334	1.13	236
Filler-D0002674	8989175	141340221	84671	1.17	195
Filler-D0002767	7175083	71727485	64262	1.11	153

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: umitools_stats_violin_table

Sort	Column	Description	ID
\|\|	Positions Dedup	Total number of positions deduplicated	`positions_deduplicated`
\|\|	Total UMIs	Total UMIs found in sample	`total_umis`
\|\|	Unique UMIs	Unique UMIs found in sample	`unique_umis`
\|\|	Mean #UMI	Mean number of unique UMIs per position	`mean_umi_per_pos`
\|\|	Max #UMI	Max number of unique UMIs per position	`max_umi_per_pos`

fastp

Version:


                      
                        1.0.1

All-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).https://github.com/OpenGene/fastpDOI: 10.1093/bioinformatics/bty560

Fastp goes through fastq files in a folder and perform a series of quality control and filtering. Quality control and reporting are displayed both before and after filtering, allowing for a clear depiction of the consequences of the filtering process. Notably, the latter can be conducted on a variety of parameters including quality scores, length, as well as the presence of adapters, polyG, or polyX tailing.

Fastp was run on each flowcell lane independently. Only the last lane is represented in this section

Filtered Reads

Filtering statistics of sampled reads.

Created with MultiQC

Insert Sizes

Insert size estimation of sampled reads.

Created with MultiQC

Sequence Quality

Average sequencing quality over each base of all reads.

Created with MultiQC

GC Content

Average GC content over each base of all reads.

Created with MultiQC

N content

Average N content over each base of all reads.

Created with MultiQC

BCL Convert

Demultiplexes data and converts BCL files to FASTQ file formats for downstream analysis.https://support.illumina.com/sequencing/sequencing_software/bcl-convert.html

Warning: Detected multiple bclconvert files from the same sequencer run. Files were merged and undetermined stats were recalculated.

Sample Statistics

Statistics about each sample for each flowcell

Showing ³²/₃₂ rows and ⁹/₁₁ columns.

Sample Name	Clusters	Yield	Clusters/run	Yield/run	Bases ≥ Q30 (PF)	Bases ≥ Q30 (PF)	Perfect index	One mismatch index	Mean quality score	Index
Filler-D0000276	853.3M	255986.8Mb	2.5%	2.5%	245279.7Mb	95.8%	98.1%	1.9%	39.1	AACTGAGC-CAATCAGG
↳ Filler-D0000276 - L2	105.5M	31650.8Mb	0.3%	0.3%	30249.3Mb	95.6%	95.5%	4.5%	39.0	AACTGAGC-CAATCAGG
↳ Filler-D0000276 - L3	106.3M	31897.8Mb	0.3%	0.3%	30518.6Mb	95.7%	97.7%	2.3%	39.1	AACTGAGC-CAATCAGG
↳ Filler-D0000276 - L4	106.8M	32050.3Mb	0.3%	0.3%	30671.3Mb	95.7%	98.5%	1.5%	39.1	AACTGAGC-CAATCAGG
↳ Filler-D0000276 - L1	106.8M	32033.5Mb	0.3%	0.3%	30727.1Mb	95.9%	98.6%	1.4%	39.2	AACTGAGC-CAATCAGG
↳ Filler-D0000276 - L6	106.9M	32083.1Mb	0.3%	0.3%	30777.4Mb	95.9%	98.5%	1.5%	39.2	AACTGAGC-CAATCAGG
↳ Filler-D0000276 - L5	107.4M	32214.5Mb	0.3%	0.3%	30887.5Mb	95.9%	98.6%	1.4%	39.1	AACTGAGC-CAATCAGG
↳ Filler-D0000276 - L7	106.8M	32026.8Mb	0.3%	0.3%	30719.7Mb	95.9%	98.5%	1.5%	39.1	AACTGAGC-CAATCAGG
↳ Filler-D0000276 - L8	106.8M	32029.9Mb	0.3%	0.3%	30728.8Mb	95.9%	98.5%	1.5%	39.2	AACTGAGC-CAATCAGG
Filler-D0000330	1465.0M	439497.0Mb	4.3%	4.3%	422285.4Mb	96.1%	97.4%	2.6%	39.2	TGAGCTAG-GAACGGTT
↳ Filler-D0000330 - L2	180.2M	54057.7Mb	0.5%	0.5%	51812.9Mb	95.8%	95.1%	4.9%	39.1	TGAGCTAG-GAACGGTT
↳ Filler-D0000330 - L3	181.9M	54579.6Mb	0.5%	0.5%	52365.9Mb	95.9%	97.0%	3.0%	39.2	TGAGCTAG-GAACGGTT
↳ Filler-D0000330 - L4	181.8M	54554.8Mb	0.5%	0.5%	52354.3Mb	96.0%	97.8%	2.2%	39.2	TGAGCTAG-GAACGGTT
↳ Filler-D0000330 - L1	183.7M	55106.0Mb	0.5%	0.5%	52999.9Mb	96.2%	97.9%	2.1%	39.2	TGAGCTAG-GAACGGTT
↳ Filler-D0000330 - L6	183.7M	55122.3Mb	0.5%	0.5%	53022.0Mb	96.2%	97.8%	2.2%	39.2	TGAGCTAG-GAACGGTT
↳ Filler-D0000330 - L5	183.2M	54957.6Mb	0.5%	0.5%	52836.0Mb	96.1%	97.9%	2.1%	39.2	TGAGCTAG-GAACGGTT
↳ Filler-D0000330 - L7	184.6M	55381.2Mb	0.5%	0.5%	53268.2Mb	96.2%	97.9%	2.1%	39.2	TGAGCTAG-GAACGGTT
↳ Filler-D0000330 - L8	185.8M	55737.7Mb	0.5%	0.5%	53626.3Mb	96.2%	97.9%	2.1%	39.2	TGAGCTAG-GAACGGTT
Filler-D0000393	995.6M	298672.6Mb	2.9%	2.9%	287026.0Mb	96.1%	97.9%	2.1%	39.2	GCTATCCT-AACAGGTG
↳ Filler-D0000393 - L2	123.6M	37074.2Mb	0.4%	0.4%	35536.6Mb	95.9%	95.4%	4.6%	39.1	GCTATCCT-AACAGGTG
↳ Filler-D0000393 - L3	124.2M	37258.4Mb	0.4%	0.4%	35754.2Mb	96.0%	97.5%	2.5%	39.2	GCTATCCT-AACAGGTG
↳ Filler-D0000393 - L4	124.6M	37382.1Mb	0.4%	0.4%	35882.4Mb	96.0%	98.3%	1.7%	39.2	GCTATCCT-AACAGGTG
↳ Filler-D0000393 - L1	124.9M	37465.4Mb	0.4%	0.4%	36040.6Mb	96.2%	98.4%	1.6%	39.2	GCTATCCT-AACAGGTG
↳ Filler-D0000393 - L6	124.7M	37395.6Mb	0.4%	0.4%	35974.6Mb	96.2%	98.3%	1.7%	39.2	GCTATCCT-AACAGGTG
↳ Filler-D0000393 - L5	125.4M	37629.9Mb	0.4%	0.4%	36183.5Mb	96.2%	98.4%	1.6%	39.2	GCTATCCT-AACAGGTG
↳ Filler-D0000393 - L7	124.2M	37253.0Mb	0.4%	0.4%	35839.5Mb	96.2%	98.3%	1.7%	39.2	GCTATCCT-AACAGGTG
↳ Filler-D0000393 - L8	124.0M	37214.1Mb	0.4%	0.4%	35814.7Mb	96.2%	98.3%	1.7%	39.2	GCTATCCT-AACAGGTG
Filler-D0000445	1378.3M	413491.2Mb	4.0%	4.0%	397273.5Mb	96.1%	97.9%	2.1%	39.2	GATTACCG-TTGGACTG
↳ Filler-D0000445 - L2	169.8M	50931.2Mb	0.5%	0.5%	48808.4Mb	95.8%	95.3%	4.7%	39.1	GATTACCG-TTGGACTG
↳ Filler-D0000445 - L3	171.1M	51321.0Mb	0.5%	0.5%	49231.9Mb	95.9%	97.5%	2.5%	39.2	GATTACCG-TTGGACTG
↳ Filler-D0000445 - L4	171.4M	51416.4Mb	0.5%	0.5%	49335.7Mb	96.0%	98.4%	1.6%	39.2	GATTACCG-TTGGACTG
↳ Filler-D0000445 - L1	173.2M	51946.5Mb	0.5%	0.5%	49963.4Mb	96.2%	98.4%	1.6%	39.2	GATTACCG-TTGGACTG
↳ Filler-D0000445 - L6	172.6M	51794.7Mb	0.5%	0.5%	49818.3Mb	96.2%	98.4%	1.6%	39.2	GATTACCG-TTGGACTG
↳ Filler-D0000445 - L5	172.4M	51731.0Mb	0.5%	0.5%	49729.0Mb	96.1%	98.4%	1.6%	39.2	GATTACCG-TTGGACTG
↳ Filler-D0000445 - L7	173.3M	51976.1Mb	0.5%	0.5%	49992.7Mb	96.2%	98.4%	1.6%	39.2	GATTACCG-TTGGACTG
↳ Filler-D0000445 - L8	174.6M	52374.4Mb	0.5%	0.5%	50394.1Mb	96.2%	98.4%	1.6%	39.2	GATTACCG-TTGGACTG
Filler-D0000613	1075.8M	322751.4Mb	3.2%	3.1%	309432.5Mb	95.9%	97.9%	2.1%	39.1	TGGACTCT-TCTTACGG
↳ Filler-D0000613 - L2	133.4M	40014.1Mb	0.4%	0.4%	38263.1Mb	95.6%	95.3%	4.7%	39.1	TGGACTCT-TCTTACGG
↳ Filler-D0000613 - L3	134.3M	40304.6Mb	0.4%	0.4%	38582.2Mb	95.7%	97.5%	2.5%	39.1	TGGACTCT-TCTTACGG
↳ Filler-D0000613 - L4	134.5M	40359.9Mb	0.4%	0.4%	38642.7Mb	95.7%	98.3%	1.7%	39.1	TGGACTCT-TCTTACGG
↳ Filler-D0000613 - L1	135.0M	40498.5Mb	0.4%	0.4%	38873.2Mb	96.0%	98.4%	1.6%	39.2	TGGACTCT-TCTTACGG
↳ Filler-D0000613 - L6	134.7M	40398.7Mb	0.4%	0.4%	38775.8Mb	96.0%	98.3%	1.7%	39.2	TGGACTCT-TCTTACGG
↳ Filler-D0000613 - L5	135.6M	40671.9Mb	0.4%	0.4%	39016.1Mb	95.9%	98.4%	1.6%	39.2	TGGACTCT-TCTTACGG
↳ Filler-D0000613 - L7	134.2M	40249.9Mb	0.4%	0.4%	38632.3Mb	96.0%	98.3%	1.7%	39.2	TGGACTCT-TCTTACGG
↳ Filler-D0000613 - L8	134.2M	40253.8Mb	0.4%	0.4%	38647.1Mb	96.0%	98.4%	1.6%	39.2	TGGACTCT-TCTTACGG
Filler-D0000617	1062.1M	318623.0Mb	3.1%	3.1%	305424.2Mb	95.9%	97.7%	2.3%	39.1	ACCACGAT-GTCTGCAA
↳ Filler-D0000617 - L2	131.0M	39296.3Mb	0.4%	0.4%	37569.7Mb	95.6%	95.1%	4.9%	39.0	ACCACGAT-GTCTGCAA
↳ Filler-D0000617 - L3	132.3M	39685.1Mb	0.4%	0.4%	37984.9Mb	95.7%	97.3%	2.7%	39.1	ACCACGAT-GTCTGCAA
↳ Filler-D0000617 - L4	133.0M	39889.9Mb	0.4%	0.4%	38189.4Mb	95.7%	98.2%	1.8%	39.1	ACCACGAT-GTCTGCAA
↳ Filler-D0000617 - L1	132.5M	39753.8Mb	0.4%	0.4%	38150.3Mb	96.0%	98.2%	1.8%	39.2	ACCACGAT-GTCTGCAA
↳ Filler-D0000617 - L6	133.4M	40022.5Mb	0.4%	0.4%	38408.6Mb	96.0%	98.1%	1.9%	39.2	ACCACGAT-GTCTGCAA
↳ Filler-D0000617 - L5	133.5M	40050.3Mb	0.4%	0.4%	38414.9Mb	95.9%	98.2%	1.8%	39.1	ACCACGAT-GTCTGCAA
↳ Filler-D0000617 - L7	133.4M	40022.7Mb	0.4%	0.4%	38407.2Mb	96.0%	98.2%	1.8%	39.2	ACCACGAT-GTCTGCAA
↳ Filler-D0000617 - L8	133.0M	39902.5Mb	0.4%	0.4%	38299.4Mb	96.0%	98.2%	1.8%	39.2	ACCACGAT-GTCTGCAA
Filler-D0000692	856.3M	256886.3Mb	2.5%	2.5%	244293.1Mb	95.1%	97.4%	2.6%	39.0	ACGGAACA-ACGAGAAC
↳ Filler-D0000692 - L2	105.3M	31591.3Mb	0.3%	0.3%	29962.0Mb	94.8%	94.9%	5.1%	38.9	ACGGAACA-ACGAGAAC
↳ Filler-D0000692 - L3	106.4M	31910.8Mb	0.3%	0.3%	30293.0Mb	94.9%	96.9%	3.1%	38.9	ACGGAACA-ACGAGAAC
↳ Filler-D0000692 - L4	106.6M	31991.9Mb	0.3%	0.3%	30371.1Mb	94.9%	97.8%	2.2%	39.0	ACGGAACA-ACGAGAAC
↳ Filler-D0000692 - L1	107.3M	32176.1Mb	0.3%	0.3%	30647.2Mb	95.2%	97.9%	2.1%	39.0	ACGGAACA-ACGAGAAC
↳ Filler-D0000692 - L6	107.0M	32087.6Mb	0.3%	0.3%	30559.0Mb	95.2%	97.8%	2.2%	39.0	ACGGAACA-ACGAGAAC
↳ Filler-D0000692 - L5	107.1M	32132.4Mb	0.3%	0.3%	30577.3Mb	95.2%	97.9%	2.1%	39.0	ACGGAACA-ACGAGAAC
↳ Filler-D0000692 - L7	107.6M	32291.7Mb	0.3%	0.3%	30742.3Mb	95.2%	97.8%	2.2%	39.0	ACGGAACA-ACGAGAAC
↳ Filler-D0000692 - L8	109.0M	32704.3Mb	0.3%	0.3%	31141.2Mb	95.2%	97.8%	2.2%	39.0	ACGGAACA-ACGAGAAC
Filler-D0000821	1266.8M	380047.6Mb	3.7%	3.7%	364302.2Mb	95.9%	97.9%	2.1%	39.1	TTCCAAGG-CTACAAGG
↳ Filler-D0000821 - L2	155.8M	46748.7Mb	0.5%	0.5%	44695.2Mb	95.6%	95.3%	4.7%	39.1	TTCCAAGG-CTACAAGG
↳ Filler-D0000821 - L3	157.0M	47106.4Mb	0.5%	0.5%	45081.7Mb	95.7%	97.4%	2.6%	39.1	TTCCAAGG-CTACAAGG
↳ Filler-D0000821 - L4	157.2M	47146.4Mb	0.5%	0.5%	45128.2Mb	95.7%	98.3%	1.7%	39.1	TTCCAAGG-CTACAAGG
↳ Filler-D0000821 - L1	159.0M	47704.3Mb	0.5%	0.5%	45781.3Mb	96.0%	98.4%	1.6%	39.2	TTCCAAGG-CTACAAGG
↳ Filler-D0000821 - L6	158.7M	47612.0Mb	0.5%	0.5%	45696.0Mb	96.0%	98.3%	1.7%	39.2	TTCCAAGG-CTACAAGG
↳ Filler-D0000821 - L5	158.5M	47542.8Mb	0.5%	0.5%	45599.3Mb	95.9%	98.4%	1.6%	39.2	TTCCAAGG-CTACAAGG
↳ Filler-D0000821 - L7	159.3M	47798.8Mb	0.5%	0.5%	45870.9Mb	96.0%	98.3%	1.7%	39.2	TTCCAAGG-CTACAAGG
↳ Filler-D0000821 - L8	161.3M	48388.2Mb	0.5%	0.5%	46449.5Mb	96.0%	98.3%	1.7%	39.2	TTCCAAGG-CTACAAGG
Filler-D0000939	1189.2M	356765.5Mb	3.5%	3.5%	340814.1Mb	95.5%	97.6%	2.4%	39.1	TTCGTTGG-TACACACG
↳ Filler-D0000939 - L2	146.2M	43865.4Mb	0.4%	0.4%	41794.4Mb	95.3%	95.1%	4.9%	39.0	TTCGTTGG-TACACACG
↳ Filler-D0000939 - L3	147.8M	44342.4Mb	0.4%	0.4%	42290.0Mb	95.4%	97.2%	2.8%	39.0	TTCGTTGG-TACACACG
↳ Filler-D0000939 - L4	147.7M	44304.5Mb	0.4%	0.4%	42256.8Mb	95.4%	98.1%	1.9%	39.0	TTCGTTGG-TACACACG
↳ Filler-D0000939 - L1	148.8M	44631.8Mb	0.4%	0.4%	42692.2Mb	95.7%	98.1%	1.9%	39.1	TTCGTTGG-TACACACG
↳ Filler-D0000939 - L6	149.0M	44707.9Mb	0.4%	0.4%	42764.7Mb	95.7%	98.1%	1.9%	39.1	TTCGTTGG-TACACACG
↳ Filler-D0000939 - L5	148.6M	44576.2Mb	0.4%	0.4%	42610.6Mb	95.6%	98.1%	1.9%	39.1	TTCGTTGG-TACACACG
↳ Filler-D0000939 - L7	149.9M	44978.2Mb	0.4%	0.4%	43015.9Mb	95.6%	98.1%	1.9%	39.1	TTCGTTGG-TACACACG
↳ Filler-D0000939 - L8	151.2M	45359.2Mb	0.4%	0.4%	43389.5Mb	95.7%	98.1%	1.9%	39.1	TTCGTTGG-TACACACG
Filler-D0000941	880.1M	264042.3Mb	2.6%	2.6%	253414.7Mb	96.0%	98.1%	1.9%	39.2	CGGCTAAT-CTCGTTCT
↳ Filler-D0000941 - L2	109.3M	32796.5Mb	0.3%	0.3%	31397.2Mb	95.7%	95.5%	4.5%	39.1	CGGCTAAT-CTCGTTCT
↳ Filler-D0000941 - L3	110.5M	33135.7Mb	0.3%	0.3%	31757.3Mb	95.8%	97.7%	2.3%	39.1	CGGCTAAT-CTCGTTCT
↳ Filler-D0000941 - L4	111.0M	33293.8Mb	0.3%	0.3%	31918.6Mb	95.9%	98.6%	1.4%	39.1	CGGCTAAT-CTCGTTCT
↳ Filler-D0000941 - L1	110.0M	32986.0Mb	0.3%	0.3%	31691.5Mb	96.1%	98.6%	1.4%	39.2	CGGCTAAT-CTCGTTCT
↳ Filler-D0000941 - L6	110.4M	33128.8Mb	0.3%	0.3%	31829.2Mb	96.1%	98.6%	1.4%	39.2	CGGCTAAT-CTCGTTCT
↳ Filler-D0000941 - L5	111.3M	33403.4Mb	0.3%	0.3%	32080.4Mb	96.0%	98.6%	1.4%	39.2	CGGCTAAT-CTCGTTCT
↳ Filler-D0000941 - L7	109.3M	32801.9Mb	0.3%	0.3%	31513.2Mb	96.1%	98.6%	1.4%	39.2	CGGCTAAT-CTCGTTCT
↳ Filler-D0000941 - L8	108.3M	32496.2Mb	0.3%	0.3%	31227.2Mb	96.1%	98.6%	1.4%	39.2	CGGCTAAT-CTCGTTCT
Filler-D0000950	1206.4M	361919.3Mb	3.5%	3.5%	348081.6Mb	96.2%	97.8%	2.2%	39.2	AGAGTAGC-AAGGCGTA
↳ Filler-D0000950 - L2	148.4M	44522.6Mb	0.4%	0.4%	42711.4Mb	95.9%	95.3%	4.7%	39.1	AGAGTAGC-AAGGCGTA
↳ Filler-D0000950 - L3	150.2M	45065.8Mb	0.4%	0.4%	43278.2Mb	96.0%	97.4%	2.6%	39.2	AGAGTAGC-AAGGCGTA
↳ Filler-D0000950 - L4	150.4M	45111.4Mb	0.4%	0.4%	43333.4Mb	96.1%	98.2%	1.8%	39.2	AGAGTAGC-AAGGCGTA
↳ Filler-D0000950 - L1	150.1M	45041.8Mb	0.4%	0.4%	43360.6Mb	96.3%	98.2%	1.8%	39.2	AGAGTAGC-AAGGCGTA
↳ Filler-D0000950 - L6	152.0M	45601.0Mb	0.4%	0.4%	43906.3Mb	96.3%	98.2%	1.8%	39.2	AGAGTAGC-AAGGCGTA
↳ Filler-D0000950 - L5	152.1M	45639.6Mb	0.4%	0.4%	43920.3Mb	96.2%	98.3%	1.7%	39.2	AGAGTAGC-AAGGCGTA
↳ Filler-D0000950 - L7	151.8M	45532.9Mb	0.4%	0.4%	43841.5Mb	96.3%	98.2%	1.8%	39.2	AGAGTAGC-AAGGCGTA
↳ Filler-D0000950 - L8	151.3M	45404.2Mb	0.4%	0.4%	43730.0Mb	96.3%	98.2%	1.8%	39.2	AGAGTAGC-AAGGCGTA
Filler-D0000977	793.0M	237886.9Mb	2.3%	2.3%	227872.4Mb	95.8%	97.3%	2.7%	39.1	GCAAGATC-AGTCGAAG
↳ Filler-D0000977 - L2	97.3M	29190.1Mb	0.3%	0.3%	27890.4Mb	95.5%	94.8%	5.2%	39.0	GCAAGATC-AGTCGAAG
↳ Filler-D0000977 - L3	98.6M	29574.9Mb	0.3%	0.3%	28286.2Mb	95.6%	96.9%	3.1%	39.1	GCAAGATC-AGTCGAAG
↳ Filler-D0000977 - L4	98.6M	29580.5Mb	0.3%	0.3%	28296.4Mb	95.7%	97.7%	2.3%	39.1	GCAAGATC-AGTCGAAG
↳ Filler-D0000977 - L1	98.9M	29679.9Mb	0.3%	0.3%	28462.1Mb	95.9%	97.8%	2.2%	39.1	GCAAGATC-AGTCGAAG
↳ Filler-D0000977 - L6	99.6M	29883.8Mb	0.3%	0.3%	28660.9Mb	95.9%	97.8%	2.2%	39.1	GCAAGATC-AGTCGAAG
↳ Filler-D0000977 - L5	99.2M	29772.2Mb	0.3%	0.3%	28536.2Mb	95.8%	97.9%	2.1%	39.1	GCAAGATC-AGTCGAAG
↳ Filler-D0000977 - L7	100.0M	30007.4Mb	0.3%	0.3%	28776.1Mb	95.9%	97.8%	2.2%	39.1	GCAAGATC-AGTCGAAG
↳ Filler-D0000977 - L8	100.7M	30198.0Mb	0.3%	0.3%	28964.0Mb	95.9%	97.8%	2.2%	39.2	GCAAGATC-AGTCGAAG
Filler-D0001395	925.0M	277500.0Mb	2.7%	2.7%	266671.6Mb	96.1%	97.7%	2.3%	39.2	GAATCCGA-AGCTAGTG
↳ Filler-D0001395 - L2	114.3M	34290.7Mb	0.3%	0.3%	32868.6Mb	95.9%	95.2%	4.8%	39.1	GAATCCGA-AGCTAGTG
↳ Filler-D0001395 - L3	115.2M	34551.9Mb	0.3%	0.3%	33151.4Mb	95.9%	97.3%	2.7%	39.2	GAATCCGA-AGCTAGTG
↳ Filler-D0001395 - L4	115.9M	34765.8Mb	0.3%	0.3%	33367.0Mb	96.0%	98.2%	1.8%	39.2	GAATCCGA-AGCTAGTG
↳ Filler-D0001395 - L1	115.4M	34625.8Mb	0.3%	0.3%	33308.0Mb	96.2%	98.2%	1.8%	39.2	GAATCCGA-AGCTAGTG
↳ Filler-D0001395 - L6	116.2M	34850.9Mb	0.3%	0.3%	33528.3Mb	96.2%	98.2%	1.8%	39.2	GAATCCGA-AGCTAGTG
↳ Filler-D0001395 - L5	116.2M	34871.2Mb	0.3%	0.3%	33530.8Mb	96.2%	98.3%	1.7%	39.2	GAATCCGA-AGCTAGTG
↳ Filler-D0001395 - L7	115.9M	34770.4Mb	0.3%	0.3%	33451.7Mb	96.2%	98.2%	1.8%	39.2	GAATCCGA-AGCTAGTG
↳ Filler-D0001395 - L8	115.9M	34773.4Mb	0.3%	0.3%	33465.7Mb	96.2%	98.2%	1.8%	39.2	GAATCCGA-AGCTAGTG
Filler-D0001496	1141.3M	342399.5Mb	3.4%	3.3%	329451.3Mb	96.2%	97.7%	2.3%	39.2	GTGCCATA-CTCCTAGT
↳ Filler-D0001496 - L2	141.0M	42314.1Mb	0.4%	0.4%	40613.6Mb	96.0%	95.1%	4.9%	39.1	GTGCCATA-CTCCTAGT
↳ Filler-D0001496 - L3	142.3M	42701.0Mb	0.4%	0.4%	41030.0Mb	96.1%	97.3%	2.7%	39.2	GTGCCATA-CTCCTAGT
↳ Filler-D0001496 - L4	142.7M	42818.1Mb	0.4%	0.4%	41156.1Mb	96.1%	98.2%	1.8%	39.2	GTGCCATA-CTCCTAGT
↳ Filler-D0001496 - L1	142.7M	42811.1Mb	0.4%	0.4%	41228.7Mb	96.3%	98.2%	1.8%	39.2	GTGCCATA-CTCCTAGT
↳ Filler-D0001496 - L6	143.4M	43019.1Mb	0.4%	0.4%	41432.8Mb	96.3%	98.2%	1.8%	39.2	GTGCCATA-CTCCTAGT
↳ Filler-D0001496 - L5	144.0M	43211.6Mb	0.4%	0.4%	41603.9Mb	96.3%	98.3%	1.7%	39.2	GTGCCATA-CTCCTAGT
↳ Filler-D0001496 - L7	142.8M	42844.0Mb	0.4%	0.4%	41265.7Mb	96.3%	98.2%	1.8%	39.2	GTGCCATA-CTCCTAGT
↳ Filler-D0001496 - L8	142.3M	42680.4Mb	0.4%	0.4%	41120.5Mb	96.3%	98.2%	1.8%	39.2	GTGCCATA-CTCCTAGT
Filler-D0001590	1187.4M	356231.0Mb	3.5%	3.5%	342142.9Mb	96.0%	98.0%	2.0%	39.2	ACTCTCGA-CTGTACCA
↳ Filler-D0001590 - L2	146.5M	43946.8Mb	0.4%	0.4%	42102.6Mb	95.8%	95.5%	4.5%	39.1	ACTCTCGA-CTGTACCA
↳ Filler-D0001590 - L3	147.9M	44378.9Mb	0.4%	0.4%	42559.9Mb	95.9%	97.6%	2.4%	39.1	ACTCTCGA-CTGTACCA
↳ Filler-D0001590 - L4	148.9M	44657.5Mb	0.4%	0.4%	42838.8Mb	95.9%	98.5%	1.5%	39.2	ACTCTCGA-CTGTACCA
↳ Filler-D0001590 - L1	148.4M	44505.4Mb	0.4%	0.4%	42788.3Mb	96.1%	98.5%	1.5%	39.2	ACTCTCGA-CTGTACCA
↳ Filler-D0001590 - L6	149.3M	44781.1Mb	0.4%	0.4%	43058.1Mb	96.2%	98.5%	1.5%	39.2	ACTCTCGA-CTGTACCA
↳ Filler-D0001590 - L5	149.4M	44827.5Mb	0.4%	0.4%	43081.6Mb	96.1%	98.5%	1.5%	39.2	ACTCTCGA-CTGTACCA
↳ Filler-D0001590 - L7	148.8M	44637.2Mb	0.4%	0.4%	42918.3Mb	96.1%	98.5%	1.5%	39.2	ACTCTCGA-CTGTACCA
↳ Filler-D0001590 - L8	148.3M	44496.7Mb	0.4%	0.4%	42795.2Mb	96.2%	98.5%	1.5%	39.2	ACTCTCGA-CTGTACCA
Filler-D0001618	1007.0M	302097.1Mb	3.0%	2.9%	289376.1Mb	95.8%	97.8%	2.2%	39.1	CTTGTCGA-CGATGTTC
↳ Filler-D0001618 - L2	124.2M	37253.8Mb	0.4%	0.4%	35592.8Mb	95.5%	95.3%	4.7%	39.0	CTTGTCGA-CGATGTTC
↳ Filler-D0001618 - L3	125.8M	37731.9Mb	0.4%	0.4%	36084.8Mb	95.6%	97.4%	2.6%	39.1	CTTGTCGA-CGATGTTC
↳ Filler-D0001618 - L4	126.2M	37845.6Mb	0.4%	0.4%	36201.1Mb	95.7%	98.3%	1.7%	39.1	CTTGTCGA-CGATGTTC
↳ Filler-D0001618 - L1	125.2M	37566.5Mb	0.4%	0.4%	36025.9Mb	95.9%	98.3%	1.7%	39.1	CTTGTCGA-CGATGTTC
↳ Filler-D0001618 - L6	126.7M	38002.1Mb	0.4%	0.4%	36445.8Mb	95.9%	98.3%	1.7%	39.1	CTTGTCGA-CGATGTTC
↳ Filler-D0001618 - L5	127.2M	38158.2Mb	0.4%	0.4%	36574.5Mb	95.8%	98.4%	1.6%	39.1	CTTGTCGA-CGATGTTC
↳ Filler-D0001618 - L7	126.4M	37911.7Mb	0.4%	0.4%	36356.7Mb	95.9%	98.3%	1.7%	39.1	CTTGTCGA-CGATGTTC
↳ Filler-D0001618 - L8	125.4M	37627.4Mb	0.4%	0.4%	36094.4Mb	95.9%	98.3%	1.7%	39.2	CTTGTCGA-CGATGTTC
Filler-D0001802	1122.2M	336652.0Mb	3.3%	3.3%	322673.8Mb	95.8%	91.1%	8.9%	39.1	ATCGATCG-TGGAAGCA
↳ Filler-D0001802 - L2	138.0M	41389.8Mb	0.4%	0.4%	39570.4Mb	95.6%	88.8%	11.2%	39.0	ATCGATCG-TGGAAGCA
↳ Filler-D0001802 - L3	139.0M	41698.9Mb	0.4%	0.4%	39902.7Mb	95.7%	90.5%	9.5%	39.1	ATCGATCG-TGGAAGCA
↳ Filler-D0001802 - L4	139.3M	41803.2Mb	0.4%	0.4%	40011.8Mb	95.7%	91.2%	8.8%	39.1	ATCGATCG-TGGAAGCA
↳ Filler-D0001802 - L1	141.4M	42421.3Mb	0.4%	0.4%	40708.1Mb	96.0%	91.6%	8.4%	39.2	ATCGATCG-TGGAAGCA
↳ Filler-D0001802 - L6	140.3M	42083.3Mb	0.4%	0.4%	40383.5Mb	96.0%	91.6%	8.4%	39.2	ATCGATCG-TGGAAGCA
↳ Filler-D0001802 - L5	139.8M	41949.9Mb	0.4%	0.4%	40229.9Mb	95.9%	91.5%	8.5%	39.2	ATCGATCG-TGGAAGCA
↳ Filler-D0001802 - L7	141.3M	42381.8Mb	0.4%	0.4%	40667.0Mb	96.0%	91.5%	8.5%	39.2	ATCGATCG-TGGAAGCA
↳ Filler-D0001802 - L8	143.1M	42923.7Mb	0.4%	0.4%	41200.3Mb	96.0%	91.9%	8.1%	39.2	ATCGATCG-TGGAAGCA
Filler-D0001839	819.4M	245807.7Mb	2.4%	2.4%	231302.9Mb	94.1%	97.4%	2.6%	38.8	GTCGAAGA-CCACATTG
↳ Filler-D0001839 - L2	100.7M	30220.1Mb	0.3%	0.3%	28354.5Mb	93.8%	94.9%	5.1%	38.7	GTCGAAGA-CCACATTG
↳ Filler-D0001839 - L3	102.1M	30626.2Mb	0.3%	0.3%	28758.3Mb	93.9%	97.0%	3.0%	38.7	GTCGAAGA-CCACATTG
↳ Filler-D0001839 - L4	102.5M	30764.5Mb	0.3%	0.3%	28883.3Mb	93.9%	97.9%	2.1%	38.7	GTCGAAGA-CCACATTG
↳ Filler-D0001839 - L1	102.1M	30639.0Mb	0.3%	0.3%	28891.8Mb	94.3%	97.9%	2.1%	38.8	GTCGAAGA-CCACATTG
↳ Filler-D0001839 - L6	102.4M	30727.4Mb	0.3%	0.3%	28964.9Mb	94.3%	97.9%	2.1%	38.8	GTCGAAGA-CCACATTG
↳ Filler-D0001839 - L5	102.7M	30798.5Mb	0.3%	0.3%	28999.1Mb	94.2%	98.0%	2.0%	38.8	GTCGAAGA-CCACATTG
↳ Filler-D0001839 - L7	103.0M	30900.5Mb	0.3%	0.3%	29112.9Mb	94.2%	97.9%	2.1%	38.8	GTCGAAGA-CCACATTG
↳ Filler-D0001839 - L8	103.8M	31131.5Mb	0.3%	0.3%	29338.1Mb	94.2%	97.9%	2.1%	38.8	GTCGAAGA-CCACATTG
Filler-D0001886	813.2M	243957.4Mb	2.4%	2.4%	232673.4Mb	95.4%	97.7%	2.3%	39.0	GACGATCT-TCGTGCAT
↳ Filler-D0001886 - L2	100.6M	30191.3Mb	0.3%	0.3%	28718.3Mb	95.1%	95.2%	4.8%	38.9	GACGATCT-TCGTGCAT
↳ Filler-D0001886 - L3	101.7M	30503.6Mb	0.3%	0.3%	29045.0Mb	95.2%	97.3%	2.7%	39.0	GACGATCT-TCGTGCAT
↳ Filler-D0001886 - L4	101.9M	30559.3Mb	0.3%	0.3%	29100.0Mb	95.2%	98.2%	1.8%	39.0	GACGATCT-TCGTGCAT
↳ Filler-D0001886 - L1	101.5M	30446.9Mb	0.3%	0.3%	29079.9Mb	95.5%	98.2%	1.8%	39.1	GACGATCT-TCGTGCAT
↳ Filler-D0001886 - L6	101.9M	30559.9Mb	0.3%	0.3%	29182.9Mb	95.5%	98.2%	1.8%	39.1	GACGATCT-TCGTGCAT
↳ Filler-D0001886 - L5	102.6M	30765.2Mb	0.3%	0.3%	29359.9Mb	95.4%	98.3%	1.7%	39.1	GACGATCT-TCGTGCAT
↳ Filler-D0001886 - L7	101.6M	30477.1Mb	0.3%	0.3%	29100.4Mb	95.5%	98.2%	1.8%	39.1	GACGATCT-TCGTGCAT
↳ Filler-D0001886 - L8	101.5M	30454.1Mb	0.3%	0.3%	29086.9Mb	95.5%	98.2%	1.8%	39.1	GACGATCT-TCGTGCAT
Filler-D0001900	1097.9M	329360.4Mb	3.2%	3.2%	315008.3Mb	95.6%	97.7%	2.3%	39.1	CTTAGGAC-ACTCCTAC
↳ Filler-D0001900 - L2	135.8M	40729.9Mb	0.4%	0.4%	38854.0Mb	95.4%	95.2%	4.8%	39.0	CTTAGGAC-ACTCCTAC
↳ Filler-D0001900 - L3	137.2M	41152.5Mb	0.4%	0.4%	39295.1Mb	95.5%	97.3%	2.7%	39.1	CTTAGGAC-ACTCCTAC
↳ Filler-D0001900 - L4	137.7M	41324.2Mb	0.4%	0.4%	39464.4Mb	95.5%	98.1%	1.9%	39.1	CTTAGGAC-ACTCCTAC
↳ Filler-D0001900 - L1	137.3M	41178.1Mb	0.4%	0.4%	39436.2Mb	95.8%	98.2%	1.8%	39.1	CTTAGGAC-ACTCCTAC
↳ Filler-D0001900 - L6	137.5M	41247.6Mb	0.4%	0.4%	39500.0Mb	95.8%	98.2%	1.8%	39.1	CTTAGGAC-ACTCCTAC
↳ Filler-D0001900 - L5	138.2M	41459.8Mb	0.4%	0.4%	39677.6Mb	95.7%	98.2%	1.8%	39.1	CTTAGGAC-ACTCCTAC
↳ Filler-D0001900 - L7	137.2M	41156.0Mb	0.4%	0.4%	39407.3Mb	95.8%	98.2%	1.8%	39.1	CTTAGGAC-ACTCCTAC
↳ Filler-D0001900 - L8	137.0M	41112.2Mb	0.4%	0.4%	39373.7Mb	95.8%	98.1%	1.9%	39.1	CTTAGGAC-ACTCCTAC
Filler-D0001907	1230.5M	369151.4Mb	3.6%	3.6%	354587.8Mb	96.1%	97.3%	2.7%	39.2	GAGACGAT-ACCGGTTA
↳ Filler-D0001907 - L2	151.9M	45567.5Mb	0.4%	0.4%	43656.6Mb	95.8%	94.8%	5.2%	39.1	GAGACGAT-ACCGGTTA
↳ Filler-D0001907 - L3	153.6M	46088.8Mb	0.5%	0.4%	44203.0Mb	95.9%	96.9%	3.1%	39.1	GAGACGAT-ACCGGTTA
↳ Filler-D0001907 - L4	155.1M	46530.1Mb	0.5%	0.5%	44636.7Mb	95.9%	97.8%	2.2%	39.2	GAGACGAT-ACCGGTTA
↳ Filler-D0001907 - L1	153.3M	45988.4Mb	0.5%	0.4%	44224.0Mb	96.2%	97.8%	2.2%	39.2	GAGACGAT-ACCGGTTA
↳ Filler-D0001907 - L6	154.9M	46463.3Mb	0.5%	0.5%	44681.6Mb	96.2%	97.8%	2.2%	39.2	GAGACGAT-ACCGGTTA
↳ Filler-D0001907 - L5	155.3M	46577.8Mb	0.5%	0.5%	44766.1Mb	96.1%	97.9%	2.1%	39.2	GAGACGAT-ACCGGTTA
↳ Filler-D0001907 - L7	154.0M	46197.1Mb	0.5%	0.4%	44423.6Mb	96.2%	97.8%	2.2%	39.2	GAGACGAT-ACCGGTTA
↳ Filler-D0001907 - L8	152.5M	45738.4Mb	0.4%	0.4%	43996.4Mb	96.2%	97.9%	2.1%	39.2	GAGACGAT-ACCGGTTA
Filler-D0001916	864.4M	259314.5Mb	2.5%	2.5%	247539.8Mb	95.5%	97.0%	3.0%	39.1	TACGCTAC-CGTGTGAT
↳ Filler-D0001916 - L2	106.7M	32021.1Mb	0.3%	0.3%	30483.7Mb	95.2%	94.5%	5.5%	39.0	TACGCTAC-CGTGTGAT
↳ Filler-D0001916 - L3	107.8M	32327.2Mb	0.3%	0.3%	30807.6Mb	95.3%	96.6%	3.4%	39.0	TACGCTAC-CGTGTGAT
↳ Filler-D0001916 - L4	108.1M	32443.0Mb	0.3%	0.3%	30919.1Mb	95.3%	97.5%	2.5%	39.0	TACGCTAC-CGTGTGAT
↳ Filler-D0001916 - L1	108.1M	32415.6Mb	0.3%	0.3%	30988.4Mb	95.6%	97.5%	2.5%	39.1	TACGCTAC-CGTGTGAT
↳ Filler-D0001916 - L6	108.2M	32450.1Mb	0.3%	0.3%	31018.0Mb	95.6%	97.5%	2.5%	39.1	TACGCTAC-CGTGTGAT
↳ Filler-D0001916 - L5	108.6M	32584.6Mb	0.3%	0.3%	31122.7Mb	95.5%	97.6%	2.4%	39.1	TACGCTAC-CGTGTGAT
↳ Filler-D0001916 - L7	108.4M	32520.6Mb	0.3%	0.3%	31081.3Mb	95.6%	97.5%	2.5%	39.1	TACGCTAC-CGTGTGAT
↳ Filler-D0001916 - L8	108.5M	32552.2Mb	0.3%	0.3%	31119.0Mb	95.6%	97.5%	2.5%	39.1	TACGCTAC-CGTGTGAT
Filler-D0001938	1194.9M	358460.5Mb	3.5%	3.5%	344434.4Mb	96.1%	97.4%	2.6%	39.2	GCGTCATT-CAGACGTT
↳ Filler-D0001938 - L2	147.1M	44142.3Mb	0.4%	0.4%	42305.9Mb	95.8%	94.9%	5.1%	39.1	GCGTCATT-CAGACGTT
↳ Filler-D0001938 - L3	148.6M	44566.6Mb	0.4%	0.4%	42760.0Mb	95.9%	97.0%	3.0%	39.2	GCGTCATT-CAGACGTT
↳ Filler-D0001938 - L4	148.9M	44662.2Mb	0.4%	0.4%	42860.2Mb	96.0%	97.9%	2.1%	39.2	GCGTCATT-CAGACGTT
↳ Filler-D0001938 - L1	148.5M	44552.7Mb	0.4%	0.4%	42854.6Mb	96.2%	97.9%	2.1%	39.2	GCGTCATT-CAGACGTT
↳ Filler-D0001938 - L6	150.5M	45162.7Mb	0.4%	0.4%	43443.1Mb	96.2%	97.9%	2.1%	39.2	GCGTCATT-CAGACGTT
↳ Filler-D0001938 - L5	150.7M	45216.4Mb	0.4%	0.4%	43471.4Mb	96.1%	98.0%	2.0%	39.2	GCGTCATT-CAGACGTT
↳ Filler-D0001938 - L7	150.2M	45069.6Mb	0.4%	0.4%	43354.2Mb	96.2%	97.9%	2.1%	39.2	GCGTCATT-CAGACGTT
↳ Filler-D0001938 - L8	150.3M	45087.9Mb	0.4%	0.4%	43385.1Mb	96.2%	97.9%	2.1%	39.2	GCGTCATT-CAGACGTT
Filler-D0001949	1228.0M	368412.8Mb	3.6%	3.6%	353076.2Mb	95.8%	97.7%	2.3%	39.1	AAGCACTG-AGGTCAAC
↳ Filler-D0001949 - L2	151.0M	45299.7Mb	0.4%	0.4%	43304.2Mb	95.6%	95.2%	4.8%	39.0	AAGCACTG-AGGTCAAC
↳ Filler-D0001949 - L3	152.7M	45804.7Mb	0.4%	0.4%	43830.5Mb	95.7%	97.3%	2.7%	39.1	AAGCACTG-AGGTCAAC
↳ Filler-D0001949 - L4	153.3M	45976.8Mb	0.5%	0.4%	44003.3Mb	95.7%	98.2%	1.8%	39.1	AAGCACTG-AGGTCAAC
↳ Filler-D0001949 - L1	153.4M	46025.1Mb	0.5%	0.4%	44157.6Mb	95.9%	98.2%	1.8%	39.2	AAGCACTG-AGGTCAAC
↳ Filler-D0001949 - L6	154.1M	46239.6Mb	0.5%	0.4%	44366.8Mb	95.9%	98.2%	1.8%	39.2	AAGCACTG-AGGTCAAC
↳ Filler-D0001949 - L5	153.8M	46138.7Mb	0.5%	0.4%	44245.0Mb	95.9%	98.3%	1.7%	39.1	AAGCACTG-AGGTCAAC
↳ Filler-D0001949 - L7	154.8M	46441.9Mb	0.5%	0.5%	44557.5Mb	95.9%	98.2%	1.8%	39.2	AAGCACTG-AGGTCAAC
↳ Filler-D0001949 - L8	155.0M	46486.2Mb	0.5%	0.5%	44611.4Mb	96.0%	98.2%	1.8%	39.2	AAGCACTG-AGGTCAAC
Filler-D0002088	1086.5M	325945.4Mb	3.2%	3.2%	312882.8Mb	96.0%	97.9%	2.1%	39.2	ATCCGGTA-GACCGATA
↳ Filler-D0002088 - L2	134.5M	40354.1Mb	0.4%	0.4%	38639.2Mb	95.8%	95.4%	4.6%	39.1	ATCCGGTA-GACCGATA
↳ Filler-D0002088 - L3	135.8M	40738.3Mb	0.4%	0.4%	39049.2Mb	95.9%	97.5%	2.5%	39.1	ATCCGGTA-GACCGATA
↳ Filler-D0002088 - L4	136.3M	40897.3Mb	0.4%	0.4%	39209.8Mb	95.9%	98.4%	1.6%	39.1	ATCCGGTA-GACCGATA
↳ Filler-D0002088 - L1	135.9M	40770.8Mb	0.4%	0.4%	39178.0Mb	96.1%	98.4%	1.6%	39.2	ATCCGGTA-GACCGATA
↳ Filler-D0002088 - L6	136.3M	40895.3Mb	0.4%	0.4%	39299.8Mb	96.1%	98.4%	1.6%	39.2	ATCCGGTA-GACCGATA
↳ Filler-D0002088 - L5	136.9M	41076.9Mb	0.4%	0.4%	39455.0Mb	96.1%	98.5%	1.5%	39.2	ATCCGGTA-GACCGATA
↳ Filler-D0002088 - L7	135.6M	40677.0Mb	0.4%	0.4%	39088.5Mb	96.1%	98.4%	1.6%	39.2	ATCCGGTA-GACCGATA
↳ Filler-D0002088 - L8	135.1M	40535.6Mb	0.4%	0.4%	38963.3Mb	96.1%	98.4%	1.6%	39.2	ATCCGGTA-GACCGATA
Filler-D0002301	816.2M	244874.4Mb	2.4%	2.4%	234083.8Mb	95.6%	97.4%	2.6%	39.1	CTGATCGT-GCGCATAT
↳ Filler-D0002301 - L2	100.9M	30282.6Mb	0.3%	0.3%	28872.7Mb	95.3%	94.8%	5.2%	39.0	CTGATCGT-GCGCATAT
↳ Filler-D0002301 - L3	102.0M	30610.7Mb	0.3%	0.3%	29215.5Mb	95.4%	96.9%	3.1%	39.0	CTGATCGT-GCGCATAT
↳ Filler-D0002301 - L4	102.0M	30593.4Mb	0.3%	0.3%	29201.1Mb	95.4%	97.9%	2.1%	39.1	CTGATCGT-GCGCATAT
↳ Filler-D0002301 - L1	102.1M	30619.3Mb	0.3%	0.3%	29308.2Mb	95.7%	97.9%	2.1%	39.1	CTGATCGT-GCGCATAT
↳ Filler-D0002301 - L6	102.3M	30690.7Mb	0.3%	0.3%	29372.6Mb	95.7%	97.9%	2.1%	39.1	CTGATCGT-GCGCATAT
↳ Filler-D0002301 - L5	102.8M	30839.0Mb	0.3%	0.3%	29496.3Mb	95.6%	97.9%	2.1%	39.1	CTGATCGT-GCGCATAT
↳ Filler-D0002301 - L7	102.2M	30668.0Mb	0.3%	0.3%	29350.6Mb	95.7%	97.9%	2.1%	39.1	CTGATCGT-GCGCATAT
↳ Filler-D0002301 - L8	101.9M	30570.8Mb	0.3%	0.3%	29266.8Mb	95.7%	97.9%	2.1%	39.1	CTGATCGT-GCGCATAT
Filler-D0002372	1276.0M	382789.2Mb	3.7%	3.7%	366889.6Mb	95.8%	97.7%	2.3%	39.1	TCGCTGTT-CAAGTCGT
↳ Filler-D0002372 - L2	156.8M	47054.5Mb	0.5%	0.5%	44978.4Mb	95.6%	95.2%	4.8%	39.0	TCGCTGTT-CAAGTCGT
↳ Filler-D0002372 - L3	158.8M	47646.2Mb	0.5%	0.5%	45596.2Mb	95.7%	97.3%	2.7%	39.1	TCGCTGTT-CAAGTCGT
↳ Filler-D0002372 - L4	159.3M	47790.7Mb	0.5%	0.5%	45742.4Mb	95.7%	98.2%	1.8%	39.1	TCGCTGTT-CAAGTCGT
↳ Filler-D0002372 - L1	159.1M	47731.4Mb	0.5%	0.5%	45804.2Mb	96.0%	98.2%	1.8%	39.2	TCGCTGTT-CAAGTCGT
↳ Filler-D0002372 - L6	160.5M	48149.3Mb	0.5%	0.5%	46203.3Mb	96.0%	98.2%	1.8%	39.2	TCGCTGTT-CAAGTCGT
↳ Filler-D0002372 - L5	160.5M	48139.6Mb	0.5%	0.5%	46166.1Mb	95.9%	98.3%	1.7%	39.1	TCGCTGTT-CAAGTCGT
↳ Filler-D0002372 - L7	160.5M	48161.7Mb	0.5%	0.5%	46214.5Mb	96.0%	98.2%	1.8%	39.2	TCGCTGTT-CAAGTCGT
↳ Filler-D0002372 - L8	160.4M	48115.7Mb	0.5%	0.5%	46184.5Mb	96.0%	98.2%	1.8%	39.2	TCGCTGTT-CAAGTCGT
Filler-D0002488	878.4M	263525.5Mb	2.6%	2.6%	251968.1Mb	95.6%	97.7%	2.3%	39.1	CGTTGCAA-ATAGAGCG
↳ Filler-D0002488 - L2	108.2M	32448.9Mb	0.3%	0.3%	30945.3Mb	95.4%	95.2%	4.8%	39.0	CGTTGCAA-ATAGAGCG
↳ Filler-D0002488 - L3	109.0M	32709.4Mb	0.3%	0.3%	31223.5Mb	95.5%	97.3%	2.7%	39.1	CGTTGCAA-ATAGAGCG
↳ Filler-D0002488 - L4	109.2M	32774.9Mb	0.3%	0.3%	31290.5Mb	95.5%	98.1%	1.9%	39.1	CGTTGCAA-ATAGAGCG
↳ Filler-D0002488 - L1	110.1M	33042.1Mb	0.3%	0.3%	31632.1Mb	95.7%	98.2%	1.8%	39.1	CGTTGCAA-ATAGAGCG
↳ Filler-D0002488 - L6	110.0M	32985.8Mb	0.3%	0.3%	31579.3Mb	95.7%	98.1%	1.9%	39.1	CGTTGCAA-ATAGAGCG
↳ Filler-D0002488 - L5	109.9M	32982.2Mb	0.3%	0.3%	31555.9Mb	95.7%	98.2%	1.8%	39.1	CGTTGCAA-ATAGAGCG
↳ Filler-D0002488 - L7	110.5M	33156.0Mb	0.3%	0.3%	31737.0Mb	95.7%	98.1%	1.9%	39.1	CGTTGCAA-ATAGAGCG
↳ Filler-D0002488 - L8	111.4M	33426.1Mb	0.3%	0.3%	32004.5Mb	95.7%	98.1%	1.9%	39.1	CGTTGCAA-ATAGAGCG
Filler-D0002617	1047.4M	314219.2Mb	3.1%	3.1%	300175.0Mb	95.5%	97.8%	2.2%	39.1	GCACAACT-CTGAACGT
↳ Filler-D0002617 - L2	129.8M	38941.6Mb	0.4%	0.4%	37099.8Mb	95.3%	95.2%	4.8%	39.0	GCACAACT-CTGAACGT
↳ Filler-D0002617 - L3	131.3M	39388.0Mb	0.4%	0.4%	37567.3Mb	95.4%	97.4%	2.6%	39.0	GCACAACT-CTGAACGT
↳ Filler-D0002617 - L4	131.8M	39527.1Mb	0.4%	0.4%	37702.9Mb	95.4%	98.2%	1.8%	39.0	GCACAACT-CTGAACGT
↳ Filler-D0002617 - L1	130.8M	39248.7Mb	0.4%	0.4%	37545.8Mb	95.7%	98.3%	1.7%	39.1	GCACAACT-CTGAACGT
↳ Filler-D0002617 - L6	131.1M	39333.1Mb	0.4%	0.4%	37623.4Mb	95.7%	98.2%	1.8%	39.1	GCACAACT-CTGAACGT
↳ Filler-D0002617 - L5	132.1M	39620.0Mb	0.4%	0.4%	37873.5Mb	95.6%	98.3%	1.7%	39.1	GCACAACT-CTGAACGT
↳ Filler-D0002617 - L7	130.4M	39116.9Mb	0.4%	0.4%	37411.5Mb	95.6%	98.2%	1.8%	39.1	GCACAACT-CTGAACGT
↳ Filler-D0002617 - L8	130.1M	39043.8Mb	0.4%	0.4%	37350.7Mb	95.7%	98.2%	1.8%	39.1	GCACAACT-CTGAACGT
Filler-D0002650	1157.4M	347213.2Mb	3.4%	3.4%	333553.3Mb	96.1%	97.6%	2.4%	39.2	CGCATGAT-AAGCCTGA
↳ Filler-D0002650 - L2	142.5M	42759.6Mb	0.4%	0.4%	40968.2Mb	95.8%	95.1%	4.9%	39.1	CGCATGAT-AAGCCTGA
↳ Filler-D0002650 - L3	144.0M	43191.5Mb	0.4%	0.4%	41428.0Mb	95.9%	97.3%	2.7%	39.1	CGCATGAT-AAGCCTGA
↳ Filler-D0002650 - L4	144.4M	43319.0Mb	0.4%	0.4%	41558.1Mb	95.9%	98.1%	1.9%	39.2	CGCATGAT-AAGCCTGA
↳ Filler-D0002650 - L1	144.6M	43370.7Mb	0.4%	0.4%	41710.3Mb	96.2%	98.1%	1.9%	39.2	CGCATGAT-AAGCCTGA
↳ Filler-D0002650 - L6	145.6M	43670.0Mb	0.4%	0.4%	42000.2Mb	96.2%	98.1%	1.9%	39.2	CGCATGAT-AAGCCTGA
↳ Filler-D0002650 - L5	145.8M	43731.0Mb	0.4%	0.4%	42034.5Mb	96.1%	98.2%	1.8%	39.2	CGCATGAT-AAGCCTGA
↳ Filler-D0002650 - L7	145.1M	43528.3Mb	0.4%	0.4%	41864.9Mb	96.2%	98.1%	1.9%	39.2	CGCATGAT-AAGCCTGA
↳ Filler-D0002650 - L8	145.5M	43643.0Mb	0.4%	0.4%	41989.1Mb	96.2%	98.1%	1.9%	39.2	CGCATGAT-AAGCCTGA
Filler-D0002674	1408.9M	422661.1Mb	4.1%	4.1%	404485.1Mb	95.7%	97.7%	2.3%	39.1	ATCCAGAG-TAACGTCG
↳ Filler-D0002674 - L2	173.0M	51900.8Mb	0.5%	0.5%	49540.1Mb	95.5%	95.2%	4.8%	39.0	ATCCAGAG-TAACGTCG
↳ Filler-D0002674 - L3	175.0M	52492.5Mb	0.5%	0.5%	50154.1Mb	95.5%	97.2%	2.8%	39.1	ATCCAGAG-TAACGTCG
↳ Filler-D0002674 - L4	175.2M	52548.4Mb	0.5%	0.5%	50212.1Mb	95.6%	98.1%	1.9%	39.1	ATCCAGAG-TAACGTCG
↳ Filler-D0002674 - L1	176.1M	52830.8Mb	0.5%	0.5%	50621.8Mb	95.8%	98.2%	1.8%	39.1	ATCCAGAG-TAACGTCG
↳ Filler-D0002674 - L6	176.6M	52978.0Mb	0.5%	0.5%	50763.3Mb	95.8%	98.2%	1.8%	39.1	ATCCAGAG-TAACGTCG
↳ Filler-D0002674 - L5	176.1M	52837.3Mb	0.5%	0.5%	50594.8Mb	95.8%	98.2%	1.8%	39.1	ATCCAGAG-TAACGTCG
↳ Filler-D0002674 - L7	177.8M	53331.1Mb	0.5%	0.5%	51096.1Mb	95.8%	98.2%	1.8%	39.1	ATCCAGAG-TAACGTCG
↳ Filler-D0002674 - L8	179.1M	53742.1Mb	0.5%	0.5%	51502.8Mb	95.8%	98.2%	1.8%	39.1	ATCCAGAG-TAACGTCG
Filler-D0002767	715.5M	214657.7Mb	2.1%	2.1%	206651.3Mb	96.3%	97.8%	2.2%	39.2	CCTTGATC-GATGGAGT
↳ Filler-D0002767 - L2	88.7M	26622.7Mb	0.3%	0.3%	25564.8Mb	96.0%	95.2%	4.8%	39.1	CCTTGATC-GATGGAGT
↳ Filler-D0002767 - L3	89.6M	26881.6Mb	0.3%	0.3%	25843.9Mb	96.1%	97.4%	2.6%	39.2	CCTTGATC-GATGGAGT
↳ Filler-D0002767 - L4	90.1M	27040.4Mb	0.3%	0.3%	26004.3Mb	96.2%	98.3%	1.7%	39.2	CCTTGATC-GATGGAGT
↳ Filler-D0002767 - L1	89.4M	26830.3Mb	0.3%	0.3%	25853.0Mb	96.4%	98.3%	1.7%	39.2	CCTTGATC-GATGGAGT
↳ Filler-D0002767 - L6	89.8M	26930.9Mb	0.3%	0.3%	25952.8Mb	96.4%	98.2%	1.8%	39.2	CCTTGATC-GATGGAGT
↳ Filler-D0002767 - L5	90.5M	27154.6Mb	0.3%	0.3%	26157.7Mb	96.3%	98.3%	1.7%	39.2	CCTTGATC-GATGGAGT
↳ Filler-D0002767 - L7	89.3M	26778.1Mb	0.3%	0.3%	25807.0Mb	96.4%	98.3%	1.7%	39.2	CCTTGATC-GATGGAGT
↳ Filler-D0002767 - L8	88.1M	26419.1Mb	0.3%	0.3%	25467.7Mb	96.4%	98.3%	1.7%	39.2	CCTTGATC-GATGGAGT

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: bclconvert-sample-stats-table_table

Sort	Column	Description	ID	Scale
\|\|	Clusters	Total number of clusters (read pairs) for this sample as determined by bclconvert demultiplexing (millions)	`bclconvert-clusters`	read_count
\|\|	Yield	Total number of bases for this sample as determined by bclconvert demultiplexing (millions)	`bclconvert-yield`	base_count
\|\|	Clusters/run	Percentage of clusters (read pairs) for this sample in this run, as determined by bclconvert demultiplexing	`bclconvert-percent_clusters`
\|\|	Yield/run	Percentage of sequenced bases for this sample in this run	`bclconvert-percent_yield`
\|\|	Bases ≥ Q30 (PF)	Number of bases with a Phred score of 30 or higher, passing filter (millions)	`bclconvert-yield_q30`	base_count
\|\|	Bases ≥ Q30 (PF)	Percent of bases with a Phred score of 30 or higher, passing filter (millions)	`bclconvert-percent_yield_q30`
\|\|	Perfect index	Percent of reads with perfect index (0 mismatches)	`bclconvert-percent_perfect_index_reads`
\|\|	One mismatch index	Percent of reads with one mismatch index	`bclconvert-percent_one_mismatch_index_reads`
\|\|	Mean quality score	Mean quality score of bases	`bclconvert-mean_quality`
\|\|	Index	Sample index	`bclconvert-index`
\|\|	Project	Sample project	`bclconvert-sample_project`

Lane Statistics

Statistics about each lane for each flowcell

Showing ⁸/₈ rows and ⁸/₈ columns.

Run ID - Lane	Clusters	Yield	Bases ≥ Q30 (PF)	Perfect index	One mismatch	Perfect index	One mismatch	Mean quality score
L1	4255.5M	1276643.9Mb	95.9%	4168.7M	86.8M	98.0%	2.0%	39.2
↳ L1 - Filler-D0002301	102.1M	30619.3Mb	95.7%	99.9M	2.2M	97.9%	2.1%	39.1
↳ L1 - Filler-D0001590	148.4M	44505.4Mb	96.1%	146.1M	2.2M	98.5%	1.5%	39.2
↳ L1 - Filler-D0000330	183.7M	55106.0Mb	96.2%	179.8M	3.9M	97.9%	2.1%	39.2
↳ L1 - Filler-D0001907	153.3M	45988.4Mb	96.2%	150.0M	3.3M	97.8%	2.2%	39.2
↳ L1 - Filler-D0001618	125.2M	37566.5Mb	95.9%	123.1M	2.1M	98.3%	1.7%	39.1
↳ L1 - Filler-D0000821	159.0M	47704.3Mb	96.0%	156.4M	2.6M	98.4%	1.6%	39.2
↳ L1 - Filler-D0002650	144.6M	43370.7Mb	96.2%	141.9M	2.7M	98.1%	1.9%	39.2
↳ L1 - Filler-D0000692	107.3M	32176.1Mb	95.2%	105.0M	2.3M	97.9%	2.1%	39.0
↳ L1 - Filler-D0000941	110.0M	32986.0Mb	96.1%	108.4M	1.5M	98.6%	1.4%	39.2
↳ L1 - Filler-D0001802	141.4M	42421.3Mb	96.0%	129.6M	11.8M	91.6%	8.4%	39.2
↳ L1 - Filler-D0000977	98.9M	29679.9Mb	95.9%	96.8M	2.2M	97.8%	2.2%	39.1
↳ L1 - Filler-D0000393	124.9M	37465.4Mb	96.2%	122.8M	2.0M	98.4%	1.6%	39.2
↳ L1 - Filler-D0001916	108.1M	32415.6Mb	95.6%	105.3M	2.7M	97.5%	2.5%	39.1
↳ L1 - Filler-D0000613	135.0M	40498.5Mb	96.0%	132.8M	2.2M	98.4%	1.6%	39.2
↳ L1 - Filler-D0000950	150.1M	45041.8Mb	96.3%	147.5M	2.7M	98.2%	1.8%	39.2
↳ L1 - Filler-D0002674	176.1M	52830.8Mb	95.8%	172.9M	3.2M	98.2%	1.8%	39.1
↳ L1 - Filler-D0001886	101.5M	30446.9Mb	95.5%	99.7M	1.8M	98.2%	1.8%	39.1
↳ L1 - Filler-D0000276	106.8M	32033.5Mb	95.9%	105.2M	1.5M	98.6%	1.4%	39.2
↳ L1 - Filler-D0001900	137.3M	41178.1Mb	95.8%	134.8M	2.4M	98.2%	1.8%	39.1
↳ L1 - Filler-D0001496	142.7M	42811.1Mb	96.3%	140.2M	2.5M	98.2%	1.8%	39.2
↳ L1 - Filler-D0001395	115.4M	34625.8Mb	96.2%	113.4M	2.1M	98.2%	1.8%	39.2
↳ L1 - Filler-D0002372	159.1M	47731.4Mb	96.0%	156.3M	2.8M	98.2%	1.8%	39.2
↳ L1 - Filler-D0000939	148.8M	44631.8Mb	95.7%	145.9M	2.8M	98.1%	1.9%	39.1
↳ L1 - Filler-D0001949	153.4M	46025.1Mb	95.9%	150.7M	2.7M	98.2%	1.8%	39.2
↳ L1 - Filler-D0002767	89.4M	26830.3Mb	96.4%	87.9M	1.5M	98.3%	1.7%	39.2
↳ L1 - Filler-D0001839	102.1M	30639.0Mb	94.3%	100.0M	2.1M	97.9%	2.1%	38.8
↳ L1 - Filler-D0000617	132.5M	39753.8Mb	96.0%	130.1M	2.4M	98.2%	1.8%	39.2
↳ L1 - Filler-D0000445	173.2M	51946.5Mb	96.2%	170.4M	2.8M	98.4%	1.6%	39.2
↳ L1 - Filler-D0002617	130.8M	39248.7Mb	95.7%	128.6M	2.3M	98.3%	1.7%	39.1
↳ L1 - Filler-D0001938	148.5M	44552.7Mb	96.2%	145.4M	3.1M	97.9%	2.1%	39.2
↳ L1 - Filler-D0002088	135.9M	40770.8Mb	96.1%	133.8M	2.1M	98.4%	1.6%	39.2
↳ L1 - Filler-D0002488	110.1M	33042.1Mb	95.7%	108.1M	2.0M	98.2%	1.8%	39.1
L2	4198.2M	1259471.1Mb	95.6%	3986.3M	211.9M	95.0%	5.0%	39.0
↳ L2 - Filler-D0002301	100.9M	30282.6Mb	95.3%	95.7M	5.3M	94.8%	5.2%	39.0
↳ L2 - Filler-D0001590	146.5M	43946.8Mb	95.8%	139.8M	6.7M	95.5%	4.5%	39.1
↳ L2 - Filler-D0000330	180.2M	54057.7Mb	95.8%	171.3M	8.9M	95.1%	4.9%	39.1
↳ L2 - Filler-D0001907	151.9M	45567.5Mb	95.8%	144.0M	7.9M	94.8%	5.2%	39.1
↳ L2 - Filler-D0001618	124.2M	37253.8Mb	95.5%	118.4M	5.8M	95.3%	4.7%	39.0
↳ L2 - Filler-D0000821	155.8M	46748.7Mb	95.6%	148.6M	7.3M	95.3%	4.7%	39.1
↳ L2 - Filler-D0002650	142.5M	42759.6Mb	95.8%	135.5M	7.0M	95.1%	4.9%	39.1
↳ L2 - Filler-D0000692	105.3M	31591.3Mb	94.8%	99.9M	5.4M	94.9%	5.1%	38.9
↳ L2 - Filler-D0000941	109.3M	32796.5Mb	95.7%	104.5M	4.9M	95.5%	4.5%	39.1
↳ L2 - Filler-D0001802	138.0M	41389.8Mb	95.6%	122.5M	15.5M	88.8%	11.2%	39.0
↳ L2 - Filler-D0000977	97.3M	29190.1Mb	95.5%	92.2M	5.1M	94.8%	5.2%	39.0
↳ L2 - Filler-D0000393	123.6M	37074.2Mb	95.9%	117.8M	5.7M	95.4%	4.6%	39.1
↳ L2 - Filler-D0001916	106.7M	32021.1Mb	95.2%	100.9M	5.8M	94.5%	5.5%	39.0
↳ L2 - Filler-D0000613	133.4M	40014.1Mb	95.6%	127.2M	6.2M	95.3%	4.7%	39.1
↳ L2 - Filler-D0000950	148.4M	44522.6Mb	95.9%	141.5M	6.9M	95.3%	4.7%	39.1
↳ L2 - Filler-D0002674	173.0M	51900.8Mb	95.5%	164.7M	8.3M	95.2%	4.8%	39.0
↳ L2 - Filler-D0001886	100.6M	30191.3Mb	95.1%	95.8M	4.8M	95.2%	4.8%	38.9
↳ L2 - Filler-D0000276	105.5M	31650.8Mb	95.6%	100.7M	4.8M	95.5%	4.5%	39.0
↳ L2 - Filler-D0001900	135.8M	40729.9Mb	95.4%	129.2M	6.6M	95.2%	4.8%	39.0
↳ L2 - Filler-D0001496	141.0M	42314.1Mb	96.0%	134.2M	6.9M	95.1%	4.9%	39.1
↳ L2 - Filler-D0001395	114.3M	34290.7Mb	95.9%	108.8M	5.5M	95.2%	4.8%	39.1
↳ L2 - Filler-D0002372	156.8M	47054.5Mb	95.6%	149.3M	7.6M	95.2%	4.8%	39.0
↳ L2 - Filler-D0000939	146.2M	43865.4Mb	95.3%	139.1M	7.1M	95.1%	4.9%	39.0
↳ L2 - Filler-D0001949	151.0M	45299.7Mb	95.6%	143.8M	7.2M	95.2%	4.8%	39.0
↳ L2 - Filler-D0002767	88.7M	26622.7Mb	96.0%	84.4M	4.3M	95.2%	4.8%	39.1
↳ L2 - Filler-D0001839	100.7M	30220.1Mb	93.8%	95.6M	5.1M	94.9%	5.1%	38.7
↳ L2 - Filler-D0000617	131.0M	39296.3Mb	95.6%	124.6M	6.4M	95.1%	4.9%	39.0
↳ L2 - Filler-D0000445	169.8M	50931.2Mb	95.8%	161.9M	7.9M	95.3%	4.7%	39.1
↳ L2 - Filler-D0002617	129.8M	38941.6Mb	95.3%	123.6M	6.2M	95.2%	4.8%	39.0
↳ L2 - Filler-D0001938	147.1M	44142.3Mb	95.8%	139.6M	7.6M	94.9%	5.1%	39.1
↳ L2 - Filler-D0002088	134.5M	40354.1Mb	95.8%	128.4M	6.1M	95.4%	4.6%	39.1
↳ L2 - Filler-D0002488	108.2M	32448.9Mb	95.4%	103.0M	5.2M	95.2%	4.8%	39.0
L3	4239.9M	1271972.8Mb	95.7%	4114.6M	125.3M	97.0%	3.0%	39.1
↳ L3 - Filler-D0002301	102.0M	30610.7Mb	95.4%	98.9M	3.2M	96.9%	3.1%	39.0
↳ L3 - Filler-D0001590	147.9M	44378.9Mb	95.9%	144.3M	3.6M	97.6%	2.4%	39.1
↳ L3 - Filler-D0000330	181.9M	54579.6Mb	95.9%	176.5M	5.4M	97.0%	3.0%	39.2
↳ L3 - Filler-D0001907	153.6M	46088.8Mb	95.9%	148.9M	4.8M	96.9%	3.1%	39.1
↳ L3 - Filler-D0001618	125.8M	37731.9Mb	95.6%	122.5M	3.3M	97.4%	2.6%	39.1
↳ L3 - Filler-D0000821	157.0M	47106.4Mb	95.7%	153.0M	4.0M	97.4%	2.6%	39.1
↳ L3 - Filler-D0002650	144.0M	43191.5Mb	95.9%	140.1M	3.9M	97.3%	2.7%	39.1
↳ L3 - Filler-D0000692	106.4M	31910.8Mb	94.9%	103.1M	3.3M	96.9%	3.1%	38.9
↳ L3 - Filler-D0000941	110.5M	33135.7Mb	95.8%	107.9M	2.5M	97.7%	2.3%	39.1
↳ L3 - Filler-D0001802	139.0M	41698.9Mb	95.7%	125.9M	13.1M	90.5%	9.5%	39.1
↳ L3 - Filler-D0000977	98.6M	29574.9Mb	95.6%	95.5M	3.1M	96.9%	3.1%	39.1
↳ L3 - Filler-D0000393	124.2M	37258.4Mb	96.0%	121.0M	3.2M	97.5%	2.5%	39.2
↳ L3 - Filler-D0001916	107.8M	32327.2Mb	95.3%	104.1M	3.7M	96.6%	3.4%	39.0
↳ L3 - Filler-D0000613	134.3M	40304.6Mb	95.7%	131.0M	3.4M	97.5%	2.5%	39.1
↳ L3 - Filler-D0000950	150.2M	45065.8Mb	96.0%	146.3M	3.9M	97.4%	2.6%	39.2
↳ L3 - Filler-D0002674	175.0M	52492.5Mb	95.5%	170.1M	4.8M	97.2%	2.8%	39.1
↳ L3 - Filler-D0001886	101.7M	30503.6Mb	95.2%	98.9M	2.8M	97.3%	2.7%	39.0
↳ L3 - Filler-D0000276	106.3M	31897.8Mb	95.7%	103.8M	2.5M	97.7%	2.3%	39.1
↳ L3 - Filler-D0001900	137.2M	41152.5Mb	95.5%	133.4M	3.7M	97.3%	2.7%	39.1
↳ L3 - Filler-D0001496	142.3M	42701.0Mb	96.1%	138.5M	3.8M	97.3%	2.7%	39.2
↳ L3 - Filler-D0001395	115.2M	34551.9Mb	95.9%	112.1M	3.1M	97.3%	2.7%	39.2
↳ L3 - Filler-D0002372	158.8M	47646.2Mb	95.7%	154.6M	4.2M	97.3%	2.7%	39.1
↳ L3 - Filler-D0000939	147.8M	44342.4Mb	95.4%	143.6M	4.2M	97.2%	2.8%	39.0
↳ L3 - Filler-D0001949	152.7M	45804.7Mb	95.7%	148.6M	4.1M	97.3%	2.7%	39.1
↳ L3 - Filler-D0002767	89.6M	26881.6Mb	96.1%	87.2M	2.4M	97.4%	2.6%	39.2
↳ L3 - Filler-D0001839	102.1M	30626.2Mb	93.9%	99.0M	3.1M	97.0%	3.0%	38.7
↳ L3 - Filler-D0000617	132.3M	39685.1Mb	95.7%	128.7M	3.6M	97.3%	2.7%	39.1
↳ L3 - Filler-D0000445	171.1M	51321.0Mb	95.9%	166.7M	4.4M	97.5%	2.5%	39.2
↳ L3 - Filler-D0002617	131.3M	39388.0Mb	95.4%	127.8M	3.5M	97.4%	2.6%	39.0
↳ L3 - Filler-D0001938	148.6M	44566.6Mb	95.9%	144.1M	4.5M	97.0%	3.0%	39.2
↳ L3 - Filler-D0002088	135.8M	40738.3Mb	95.9%	132.4M	3.3M	97.5%	2.5%	39.1
↳ L3 - Filler-D0002488	109.0M	32709.4Mb	95.5%	106.0M	3.0M	97.3%	2.7%	39.1
L4	4252.4M	1275723.6Mb	95.7%	4164.1M	88.3M	97.9%	2.1%	39.1
↳ L4 - Filler-D0002301	102.0M	30593.4Mb	95.4%	99.8M	2.2M	97.9%	2.1%	39.1
↳ L4 - Filler-D0001590	148.9M	44657.5Mb	95.9%	146.6M	2.3M	98.5%	1.5%	39.2
↳ L4 - Filler-D0000330	181.8M	54554.8Mb	96.0%	177.9M	3.9M	97.8%	2.2%	39.2
↳ L4 - Filler-D0001907	155.1M	46530.1Mb	95.9%	151.6M	3.5M	97.8%	2.2%	39.2
↳ L4 - Filler-D0001618	126.2M	37845.6Mb	95.7%	124.0M	2.1M	98.3%	1.7%	39.1
↳ L4 - Filler-D0000821	157.2M	47146.4Mb	95.7%	154.6M	2.6M	98.3%	1.7%	39.1
↳ L4 - Filler-D0002650	144.4M	43319.0Mb	95.9%	141.7M	2.7M	98.1%	1.9%	39.2
↳ L4 - Filler-D0000692	106.6M	31991.9Mb	94.9%	104.3M	2.3M	97.8%	2.2%	39.0
↳ L4 - Filler-D0000941	111.0M	33293.8Mb	95.9%	109.4M	1.5M	98.6%	1.4%	39.1
↳ L4 - Filler-D0001802	139.3M	41803.2Mb	95.7%	127.1M	12.3M	91.2%	8.8%	39.1
↳ L4 - Filler-D0000977	98.6M	29580.5Mb	95.7%	96.4M	2.2M	97.7%	2.3%	39.1
↳ L4 - Filler-D0000393	124.6M	37382.1Mb	96.0%	122.5M	2.1M	98.3%	1.7%	39.2
↳ L4 - Filler-D0001916	108.1M	32443.0Mb	95.3%	105.4M	2.8M	97.5%	2.5%	39.0
↳ L4 - Filler-D0000613	134.5M	40359.9Mb	95.7%	132.3M	2.2M	98.3%	1.7%	39.1
↳ L4 - Filler-D0000950	150.4M	45111.4Mb	96.1%	147.7M	2.7M	98.2%	1.8%	39.2
↳ L4 - Filler-D0002674	175.2M	52548.4Mb	95.6%	171.8M	3.3M	98.1%	1.9%	39.1
↳ L4 - Filler-D0001886	101.9M	30559.3Mb	95.2%	100.0M	1.8M	98.2%	1.8%	39.0
↳ L4 - Filler-D0000276	106.8M	32050.3Mb	95.7%	105.3M	1.6M	98.5%	1.5%	39.1
↳ L4 - Filler-D0001900	137.7M	41324.2Mb	95.5%	135.2M	2.6M	98.1%	1.9%	39.1
↳ L4 - Filler-D0001496	142.7M	42818.1Mb	96.1%	140.1M	2.6M	98.2%	1.8%	39.2
↳ L4 - Filler-D0001395	115.9M	34765.8Mb	96.0%	113.8M	2.1M	98.2%	1.8%	39.2
↳ L4 - Filler-D0002372	159.3M	47790.7Mb	95.7%	156.5M	2.8M	98.2%	1.8%	39.1
↳ L4 - Filler-D0000939	147.7M	44304.5Mb	95.4%	144.8M	2.8M	98.1%	1.9%	39.0
↳ L4 - Filler-D0001949	153.3M	45976.8Mb	95.7%	150.5M	2.7M	98.2%	1.8%	39.1
↳ L4 - Filler-D0002767	90.1M	27040.4Mb	96.2%	88.6M	1.6M	98.3%	1.7%	39.2
↳ L4 - Filler-D0001839	102.5M	30764.5Mb	93.9%	100.4M	2.2M	97.9%	2.1%	38.7
↳ L4 - Filler-D0000617	133.0M	39889.9Mb	95.7%	130.5M	2.4M	98.2%	1.8%	39.1
↳ L4 - Filler-D0000445	171.4M	51416.4Mb	96.0%	168.6M	2.8M	98.4%	1.6%	39.2
↳ L4 - Filler-D0002617	131.8M	39527.1Mb	95.4%	129.4M	2.3M	98.2%	1.8%	39.0
↳ L4 - Filler-D0001938	148.9M	44662.2Mb	96.0%	145.7M	3.1M	97.9%	2.1%	39.2
↳ L4 - Filler-D0002088	136.3M	40897.3Mb	95.9%	134.2M	2.1M	98.4%	1.6%	39.1
↳ L4 - Filler-D0002488	109.2M	32774.9Mb	95.5%	107.2M	2.0M	98.1%	1.9%	39.1
L5	4277.5M	1283261.5Mb	95.9%	4192.1M	85.4M	98.0%	2.0%	39.1
↳ L5 - Filler-D0002301	102.8M	30839.0Mb	95.6%	100.7M	2.1M	97.9%	2.1%	39.1
↳ L5 - Filler-D0001590	149.4M	44827.5Mb	96.1%	147.2M	2.2M	98.5%	1.5%	39.2
↳ L5 - Filler-D0000330	183.2M	54957.6Mb	96.1%	179.4M	3.8M	97.9%	2.1%	39.2
↳ L5 - Filler-D0001907	155.3M	46577.8Mb	96.1%	152.0M	3.3M	97.9%	2.1%	39.2
↳ L5 - Filler-D0001618	127.2M	38158.2Mb	95.8%	125.1M	2.1M	98.4%	1.6%	39.1
↳ L5 - Filler-D0000821	158.5M	47542.8Mb	95.9%	155.9M	2.5M	98.4%	1.6%	39.2
↳ L5 - Filler-D0002650	145.8M	43731.0Mb	96.1%	143.1M	2.6M	98.2%	1.8%	39.2
↳ L5 - Filler-D0000692	107.1M	32132.4Mb	95.2%	104.9M	2.2M	97.9%	2.1%	39.0
↳ L5 - Filler-D0000941	111.3M	33403.4Mb	96.0%	109.8M	1.5M	98.6%	1.4%	39.2
↳ L5 - Filler-D0001802	139.8M	41949.9Mb	95.9%	127.9M	11.9M	91.5%	8.5%	39.2
↳ L5 - Filler-D0000977	99.2M	29772.2Mb	95.8%	97.1M	2.1M	97.9%	2.1%	39.1
↳ L5 - Filler-D0000393	125.4M	37629.9Mb	96.2%	123.4M	2.0M	98.4%	1.6%	39.2
↳ L5 - Filler-D0001916	108.6M	32584.6Mb	95.5%	106.0M	2.6M	97.6%	2.4%	39.1
↳ L5 - Filler-D0000613	135.6M	40671.9Mb	95.9%	133.4M	2.2M	98.4%	1.6%	39.2
↳ L5 - Filler-D0000950	152.1M	45639.6Mb	96.2%	149.5M	2.6M	98.3%	1.7%	39.2
↳ L5 - Filler-D0002674	176.1M	52837.3Mb	95.8%	173.0M	3.1M	98.2%	1.8%	39.1
↳ L5 - Filler-D0001886	102.6M	30765.2Mb	95.4%	100.8M	1.8M	98.3%	1.7%	39.1
↳ L5 - Filler-D0000276	107.4M	32214.5Mb	95.9%	105.9M	1.5M	98.6%	1.4%	39.1
↳ L5 - Filler-D0001900	138.2M	41459.8Mb	95.7%	135.7M	2.5M	98.2%	1.8%	39.1
↳ L5 - Filler-D0001496	144.0M	43211.6Mb	96.3%	141.5M	2.5M	98.3%	1.7%	39.2
↳ L5 - Filler-D0001395	116.2M	34871.2Mb	96.2%	114.2M	2.0M	98.3%	1.7%	39.2
↳ L5 - Filler-D0002372	160.5M	48139.6Mb	95.9%	157.7M	2.8M	98.3%	1.7%	39.1
↳ L5 - Filler-D0000939	148.6M	44576.2Mb	95.6%	145.8M	2.8M	98.1%	1.9%	39.1
↳ L5 - Filler-D0001949	153.8M	46138.7Mb	95.9%	151.1M	2.7M	98.3%	1.7%	39.1
↳ L5 - Filler-D0002767	90.5M	27154.6Mb	96.3%	89.0M	1.5M	98.3%	1.7%	39.2
↳ L5 - Filler-D0001839	102.7M	30798.5Mb	94.2%	100.6M	2.1M	98.0%	2.0%	38.8
↳ L5 - Filler-D0000617	133.5M	40050.3Mb	95.9%	131.1M	2.4M	98.2%	1.8%	39.1
↳ L5 - Filler-D0000445	172.4M	51731.0Mb	96.1%	169.7M	2.7M	98.4%	1.6%	39.2
↳ L5 - Filler-D0002617	132.1M	39620.0Mb	95.6%	129.8M	2.2M	98.3%	1.7%	39.1
↳ L5 - Filler-D0001938	150.7M	45216.4Mb	96.1%	147.7M	3.1M	98.0%	2.0%	39.2
↳ L5 - Filler-D0002088	136.9M	41076.9Mb	96.1%	134.8M	2.1M	98.5%	1.5%	39.2
↳ L5 - Filler-D0002488	109.9M	32982.2Mb	95.7%	108.0M	2.0M	98.2%	1.8%	39.1
L6	4270.2M	1281058.2Mb	95.9%	4181.6M	88.6M	97.9%	2.1%	39.2
↳ L6 - Filler-D0002301	102.3M	30690.7Mb	95.7%	100.1M	2.2M	97.9%	2.1%	39.1
↳ L6 - Filler-D0001590	149.3M	44781.1Mb	96.2%	147.0M	2.3M	98.5%	1.5%	39.2
↳ L6 - Filler-D0000330	183.7M	55122.3Mb	96.2%	179.8M	4.0M	97.8%	2.2%	39.2
↳ L6 - Filler-D0001907	154.9M	46463.3Mb	96.2%	151.5M	3.4M	97.8%	2.2%	39.2
↳ L6 - Filler-D0001618	126.7M	38002.1Mb	95.9%	124.5M	2.2M	98.3%	1.7%	39.1
↳ L6 - Filler-D0000821	158.7M	47612.0Mb	96.0%	156.0M	2.7M	98.3%	1.7%	39.2
↳ L6 - Filler-D0002650	145.6M	43670.0Mb	96.2%	142.8M	2.8M	98.1%	1.9%	39.2
↳ L6 - Filler-D0000692	107.0M	32087.6Mb	95.2%	104.6M	2.3M	97.8%	2.2%	39.0
↳ L6 - Filler-D0000941	110.4M	33128.8Mb	96.1%	108.9M	1.6M	98.6%	1.4%	39.2
↳ L6 - Filler-D0001802	140.3M	42083.3Mb	96.0%	128.4M	11.8M	91.6%	8.4%	39.2
↳ L6 - Filler-D0000977	99.6M	29883.8Mb	95.9%	97.4M	2.2M	97.8%	2.2%	39.1
↳ L6 - Filler-D0000393	124.7M	37395.6Mb	96.2%	122.5M	2.1M	98.3%	1.7%	39.2
↳ L6 - Filler-D0001916	108.2M	32450.1Mb	95.6%	105.5M	2.7M	97.5%	2.5%	39.1
↳ L6 - Filler-D0000613	134.7M	40398.7Mb	96.0%	132.4M	2.2M	98.3%	1.7%	39.2
↳ L6 - Filler-D0000950	152.0M	45601.0Mb	96.3%	149.2M	2.8M	98.2%	1.8%	39.2
↳ L6 - Filler-D0002674	176.6M	52978.0Mb	95.8%	173.4M	3.2M	98.2%	1.8%	39.1
↳ L6 - Filler-D0001886	101.9M	30559.9Mb	95.5%	100.0M	1.8M	98.2%	1.8%	39.1
↳ L6 - Filler-D0000276	106.9M	32083.1Mb	95.9%	105.3M	1.6M	98.5%	1.5%	39.2
↳ L6 - Filler-D0001900	137.5M	41247.6Mb	95.8%	135.0M	2.5M	98.2%	1.8%	39.1
↳ L6 - Filler-D0001496	143.4M	43019.1Mb	96.3%	140.9M	2.5M	98.2%	1.8%	39.2
↳ L6 - Filler-D0001395	116.2M	34850.9Mb	96.2%	114.0M	2.1M	98.2%	1.8%	39.2
↳ L6 - Filler-D0002372	160.5M	48149.3Mb	96.0%	157.6M	2.9M	98.2%	1.8%	39.2
↳ L6 - Filler-D0000939	149.0M	44707.9Mb	95.7%	146.1M	2.9M	98.1%	1.9%	39.1
↳ L6 - Filler-D0001949	154.1M	46239.6Mb	95.9%	151.4M	2.8M	98.2%	1.8%	39.2
↳ L6 - Filler-D0002767	89.8M	26930.9Mb	96.4%	88.2M	1.6M	98.2%	1.8%	39.2
↳ L6 - Filler-D0001839	102.4M	30727.4Mb	94.3%	100.3M	2.2M	97.9%	2.1%	38.8
↳ L6 - Filler-D0000617	133.4M	40022.5Mb	96.0%	130.9M	2.5M	98.1%	1.9%	39.2
↳ L6 - Filler-D0000445	172.6M	51794.7Mb	96.2%	169.8M	2.8M	98.4%	1.6%	39.2
↳ L6 - Filler-D0002617	131.1M	39333.1Mb	95.7%	128.8M	2.3M	98.2%	1.8%	39.1
↳ L6 - Filler-D0001938	150.5M	45162.7Mb	96.2%	147.4M	3.2M	97.9%	2.1%	39.2
↳ L6 - Filler-D0002088	136.3M	40895.3Mb	96.1%	134.1M	2.2M	98.4%	1.6%	39.2
↳ L6 - Filler-D0002488	110.0M	32985.8Mb	95.7%	107.9M	2.1M	98.1%	1.9%	39.1
L7	4270.2M	1281045.8Mb	95.9%	4182.1M	88.1M	97.9%	2.1%	39.2
↳ L7 - Filler-D0002301	102.2M	30668.0Mb	95.7%	100.0M	2.2M	97.9%	2.1%	39.1
↳ L7 - Filler-D0001590	148.8M	44637.2Mb	96.1%	146.5M	2.3M	98.5%	1.5%	39.2
↳ L7 - Filler-D0000330	184.6M	55381.2Mb	96.2%	180.7M	3.9M	97.9%	2.1%	39.2
↳ L7 - Filler-D0001907	154.0M	46197.1Mb	96.2%	150.7M	3.3M	97.8%	2.2%	39.2
↳ L7 - Filler-D0001618	126.4M	37911.7Mb	95.9%	124.2M	2.2M	98.3%	1.7%	39.1
↳ L7 - Filler-D0000821	159.3M	47798.8Mb	96.0%	156.7M	2.7M	98.3%	1.7%	39.2
↳ L7 - Filler-D0002650	145.1M	43528.3Mb	96.2%	142.3M	2.8M	98.1%	1.9%	39.2
↳ L7 - Filler-D0000692	107.6M	32291.7Mb	95.2%	105.3M	2.3M	97.8%	2.2%	39.0
↳ L7 - Filler-D0000941	109.3M	32801.9Mb	96.1%	107.8M	1.6M	98.6%	1.4%	39.2
↳ L7 - Filler-D0001802	141.3M	42381.8Mb	96.0%	129.3M	12.0M	91.5%	8.5%	39.2
↳ L7 - Filler-D0000977	100.0M	30007.4Mb	95.9%	97.8M	2.2M	97.8%	2.2%	39.1
↳ L7 - Filler-D0000393	124.2M	37253.0Mb	96.2%	122.1M	2.1M	98.3%	1.7%	39.2
↳ L7 - Filler-D0001916	108.4M	32520.6Mb	95.6%	105.7M	2.7M	97.5%	2.5%	39.1
↳ L7 - Filler-D0000613	134.2M	40249.9Mb	96.0%	131.9M	2.2M	98.3%	1.7%	39.2
↳ L7 - Filler-D0000950	151.8M	45532.9Mb	96.3%	149.0M	2.7M	98.2%	1.8%	39.2
↳ L7 - Filler-D0002674	177.8M	53331.1Mb	95.8%	174.5M	3.2M	98.2%	1.8%	39.1
↳ L7 - Filler-D0001886	101.6M	30477.1Mb	95.5%	99.8M	1.8M	98.2%	1.8%	39.1
↳ L7 - Filler-D0000276	106.8M	32026.8Mb	95.9%	105.2M	1.6M	98.5%	1.5%	39.1
↳ L7 - Filler-D0001900	137.2M	41156.0Mb	95.8%	134.7M	2.5M	98.2%	1.8%	39.1
↳ L7 - Filler-D0001496	142.8M	42844.0Mb	96.3%	140.3M	2.5M	98.2%	1.8%	39.2
↳ L7 - Filler-D0001395	115.9M	34770.4Mb	96.2%	113.8M	2.1M	98.2%	1.8%	39.2
↳ L7 - Filler-D0002372	160.5M	48161.7Mb	96.0%	157.6M	2.9M	98.2%	1.8%	39.2
↳ L7 - Filler-D0000939	149.9M	44978.2Mb	95.6%	147.0M	2.9M	98.1%	1.9%	39.1
↳ L7 - Filler-D0001949	154.8M	46441.9Mb	95.9%	152.0M	2.8M	98.2%	1.8%	39.2
↳ L7 - Filler-D0002767	89.3M	26778.1Mb	96.4%	87.7M	1.5M	98.3%	1.7%	39.2
↳ L7 - Filler-D0001839	103.0M	30900.5Mb	94.2%	100.8M	2.2M	97.9%	2.1%	38.8
↳ L7 - Filler-D0000617	133.4M	40022.7Mb	96.0%	131.0M	2.4M	98.2%	1.8%	39.2
↳ L7 - Filler-D0000445	173.3M	51976.1Mb	96.2%	170.4M	2.8M	98.4%	1.6%	39.2
↳ L7 - Filler-D0002617	130.4M	39116.9Mb	95.6%	128.1M	2.3M	98.2%	1.8%	39.1
↳ L7 - Filler-D0001938	150.2M	45069.6Mb	96.2%	147.1M	3.2M	97.9%	2.1%	39.2
↳ L7 - Filler-D0002088	135.6M	40677.0Mb	96.1%	133.4M	2.1M	98.4%	1.6%	39.2
↳ L7 - Filler-D0002488	110.5M	33156.0Mb	95.7%	108.5M	2.1M	98.1%	1.9%	39.1
L8	4275.4M	1282622.8Mb	96.0%	4187.9M	87.6M	98.0%	2.0%	39.2
↳ L8 - Filler-D0002301	101.9M	30570.8Mb	95.7%	99.7M	2.2M	97.9%	2.1%	39.1
↳ L8 - Filler-D0001590	148.3M	44496.7Mb	96.2%	146.1M	2.3M	98.5%	1.5%	39.2
↳ L8 - Filler-D0000330	185.8M	55737.7Mb	96.2%	181.9M	3.9M	97.9%	2.1%	39.2
↳ L8 - Filler-D0001907	152.5M	45738.4Mb	96.2%	149.2M	3.3M	97.9%	2.1%	39.2
↳ L8 - Filler-D0001618	125.4M	37627.4Mb	95.9%	123.3M	2.2M	98.3%	1.7%	39.2
↳ L8 - Filler-D0000821	161.3M	48388.2Mb	96.0%	158.6M	2.7M	98.3%	1.7%	39.2
↳ L8 - Filler-D0002650	145.5M	43643.0Mb	96.2%	142.7M	2.8M	98.1%	1.9%	39.2
↳ L8 - Filler-D0000692	109.0M	32704.3Mb	95.2%	106.6M	2.4M	97.8%	2.2%	39.0
↳ L8 - Filler-D0000941	108.3M	32496.2Mb	96.1%	106.8M	1.5M	98.6%	1.4%	39.2
↳ L8 - Filler-D0001802	143.1M	42923.7Mb	96.0%	131.5M	11.6M	91.9%	8.1%	39.2
↳ L8 - Filler-D0000977	100.7M	30198.0Mb	95.9%	98.5M	2.2M	97.8%	2.2%	39.2
↳ L8 - Filler-D0000393	124.0M	37214.1Mb	96.2%	122.0M	2.1M	98.3%	1.7%	39.2
↳ L8 - Filler-D0001916	108.5M	32552.2Mb	95.6%	105.8M	2.7M	97.5%	2.5%	39.1
↳ L8 - Filler-D0000613	134.2M	40253.8Mb	96.0%	132.0M	2.2M	98.4%	1.6%	39.2
↳ L8 - Filler-D0000950	151.3M	45404.2Mb	96.3%	148.6M	2.7M	98.2%	1.8%	39.2
↳ L8 - Filler-D0002674	179.1M	53742.1Mb	95.8%	175.9M	3.2M	98.2%	1.8%	39.1
↳ L8 - Filler-D0001886	101.5M	30454.1Mb	95.5%	99.7M	1.8M	98.2%	1.8%	39.1
↳ L8 - Filler-D0000276	106.8M	32029.9Mb	95.9%	105.2M	1.6M	98.5%	1.5%	39.2
↳ L8 - Filler-D0001900	137.0M	41112.2Mb	95.8%	134.5M	2.6M	98.1%	1.9%	39.1
↳ L8 - Filler-D0001496	142.3M	42680.4Mb	96.3%	139.8M	2.5M	98.2%	1.8%	39.2
↳ L8 - Filler-D0001395	115.9M	34773.4Mb	96.2%	113.8M	2.1M	98.2%	1.8%	39.2
↳ L8 - Filler-D0002372	160.4M	48115.7Mb	96.0%	157.5M	2.9M	98.2%	1.8%	39.2
↳ L8 - Filler-D0000939	151.2M	45359.2Mb	95.7%	148.3M	2.9M	98.1%	1.9%	39.1
↳ L8 - Filler-D0001949	155.0M	46486.2Mb	96.0%	152.2M	2.8M	98.2%	1.8%	39.2
↳ L8 - Filler-D0002767	88.1M	26419.1Mb	96.4%	86.5M	1.5M	98.3%	1.7%	39.2
↳ L8 - Filler-D0001839	103.8M	31131.5Mb	94.2%	101.6M	2.2M	97.9%	2.1%	38.8
↳ L8 - Filler-D0000617	133.0M	39902.5Mb	96.0%	130.6M	2.4M	98.2%	1.8%	39.2
↳ L8 - Filler-D0000445	174.6M	52374.4Mb	96.2%	171.8M	2.8M	98.4%	1.6%	39.2
↳ L8 - Filler-D0002617	130.1M	39043.8Mb	95.7%	127.9M	2.3M	98.2%	1.8%	39.1
↳ L8 - Filler-D0001938	150.3M	45087.9Mb	96.2%	147.1M	3.2M	97.9%	2.1%	39.2
↳ L8 - Filler-D0002088	135.1M	40535.6Mb	96.1%	133.0M	2.2M	98.4%	1.6%	39.2
↳ L8 - Filler-D0002488	111.4M	33426.1Mb	95.7%	109.3M	2.1M	98.1%	1.9%	39.1

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: bclconvert-lane-stats-table_table

Sort	Column	Description	ID	Scale
\|\|	Clusters	Total number of clusters (read pairs) for this sample as determined by bclconvert demultiplexing (millions)	`bclconvert_lane-clusters`	read_count
\|\|	Yield	Total number of bases for this sample as determined by bclconvert demultiplexing (millions)	`bclconvert_lane-yield`	base_count
\|\|	Bases ≥ Q30 (PF)	Percent of bases with a Phred score of 30 or higher, passing filter	`bclconvert_lane-percent_yield_q30`
\|\|	Perfect index	Reads with perfect index - 0 mismatches (millions)	`bclconvert_lane-perfect_index_reads`	read_count
\|\|	One mismatch	Reads with one mismatch index (millions)	`bclconvert_lane-one_mismatch_index_reads`	read_count
\|\|	Perfect index	Percent of reads with perfect index - 0 mismatches	`bclconvert_lane-percent_perfect_index_reads`
\|\|	One mismatch	Percent of reads with one mismatch	`bclconvert_lane-percent_one_mismatch_index_reads`
\|\|	Mean quality score	Mean quality score of bases	`bclconvert_lane-mean_quality`

Clusters by lane

Number of reads per lane (with number of perfect index reads).

Warning: Found multiple runs from the same sequencer output. Runs were merged and Undetermined Reads were recalculated.

Perfect index reads are those that do not have a single mismatch. All samples of a lane are combined. Undetermined reads are treated as a third category.

Created with MultiQC

Clusters by sample

Number of reads per sample.

Perfect index reads are those that do not have a single mismatch. All samples are aggregated across lanes combined. Undetermined reads are ignored. Undetermined reads are treated as a separate sample.

Created with MultiQC

Undetermined barcodes

Top 40 undetermined barcodes

Created with MultiQC

Software Versions

Software Versions lists versions of software tools extracted from file contents.

Group	Software	Version
Sambamba	Sambamba	`1.0.1`
Samtools	HTSlib	`1.23`
	Samtools	`1.21`
UMI-tools	UMI-tools	`1.1.5`
fastp	fastp	`1.0.1`

20260213_LH00166_0247_B23LGTJLT4 DAQ-UMI Report

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20260213_LH00166_0247_B23LGTJLT4 DAQ-UMI Report

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