Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/96bed949f14f43d57e4f4706d1fa6a/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/e8951acbf4805ca954d4c36ea4d759/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/b628c03877366ea694d35e453f40c2/RGB_RLP_lowDV_1ststrand_27C_4.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/e8951acbf4805ca954d4c36ea4d759/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/78bc38ccc40933168c442311fe70d4/RGB_RLP_lowDV_1ststrand_27C_4.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 97414072
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_27C_4.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	97414072
Known Splicing Events:	96451693
Partial Novel Splicing Events:	548410
Novel Splicing Events:	369383
Filtered Splicing Events:	44586

Total splicing  Junctions:	394073
Known Splicing Junctions:	249832
Partial Novel Splicing Junctions:	86409
Novel Splicing Junctions:	57832

===================================================================
Create BED file ...
Create Interact file ...