File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/e594308177bbf03995e01c4a757bc2/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (RGB_RLP_lowDV_1ststrand_40C_3)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/c1d818317f4225900af70e2ee30f00/RGB_RLP_lowDV_1ststrand_40C_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/587cba6625d637aed7b6d1bdb9414a/RGB_RLP_lowDV_1ststrand_40C_3.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/96bed949f14f43d57e4f4706d1fa6a/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/e594308177bbf03995e01c4a757bc2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/e594308177bbf03995e01c4a757bc2/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 97362718
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_40C_3.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	97362718
Known Splicing Events:	96437713
Partial Novel Splicing Events:	529403
Novel Splicing Events:	354181
Filtered Splicing Events:	41421

Total splicing  Junctions:	381707
Known Splicing Junctions:	246766
Partial Novel Splicing Junctions:	82129
Novel Splicing Junctions:	52812

===================================================================
Create BED file ...
Create Interact file ...