.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (RGB_RLP_lowDV_1ststrand_25C_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/6de0bd116e107f9ff5c171a8e4a21e/.command.log
Size: 11.3 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (RGB_RLP_lowDV_1ststrand_25C_1)
Attempt
Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/918756b5eaff6d9628c2ab62f5f32d/RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/6de0bd116e107f9ff5c171a8e4a21e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/5933866c2beaae24364d4014fc776a/RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/cytobands_hg38_GRCh38_v2.4.0.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_annot.gtf
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/protein_domains_hg38_GRCh38_v2.4.0.gff3
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/6de0bd116e107f9ff5c171a8e4a21e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/d631ed81521a0fb06b1c78e6af84aa/RGB_RLP_lowDV_1ststrand_25C_1.FusionInspector.fusions.tsv
==> STAGING COMPLETE (8 inputs)

Loading annotation
Read 3041209 records
Warning in parseGtfAttribute("exon_number", exons) :
  Failed to parse 'exon_number' attribute of 8 record(s).
Loading protein domains
Read 134356 records
Drawing fusion #1: SREBF1:NCOR1
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #2: PCDHA4:PCDHAC1
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #3: PCDHA4:PCDHAC2
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #4: SRGAP2B:SEC22B3P
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #5: SRGAP2B:SEC22B3P
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #6: SUZ12P1:AFMID
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #7: SUZ12P1:AFMID
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #8: SUZ12P1:AFMID
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #9: SUZ12P1:AFMID
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #10: ASPH:LINC02842
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #11: ASPH:LINC02842
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #12: CAB39:ARFIP1
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #13: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #14: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #15: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #16: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #17: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #18: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #19: METRNL:CTDNEP1
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_25C_1.Aligned.sortedByCoord.out.bam.bai
Done