.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:RSEQC_TO_MULTIQC (RGB_RLP_lowDV_1ststrand_27C_3)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/4caaa7a0a4ec05119346149ccbeadd/.command.sh
Size: 479 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:RSEQC_TO_MULTIQC (RGB_RLP_lowDV_1ststrand_27C_3)
Attempt

Content

#!/bin/bash -euo pipefail
rseqc_to_multiqc.py \
    --bam-stat RGB_RLP_lowDV_1ststrand_27C_3.bam_stat.txt \
    --infer-experiment RGB_RLP_lowDV_1ststrand_27C_3.infer_experiment.txt \
    --sample-id RGB_RLP_lowDV_1ststrand_27C_3 \
    -o RGB_RLP_lowDV_1ststrand_27C_3_rseqc_extra_mqc.tsv

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:RSEQC_TO_MULTIQC":
    python: $(python3 --version | sed 's/Python //g')
    rseqc_to_multiqc: 1.0.0
END_VERSIONS